BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1020
Length=1234
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608160|ref|NP_215536.1| transcription-repair coupling facto... 2465 0.0
gi|289442441|ref|ZP_06432185.1| transcription-repair coupling fa... 2464 0.0
gi|339631081|ref|YP_004722723.1| transcription-repair coupling f... 2463 0.0
gi|254550004|ref|ZP_05140451.1| transcription-repair coupling fa... 2462 0.0
gi|289761156|ref|ZP_06520534.1| transcription-repair coupling fa... 2462 0.0
gi|298524516|ref|ZP_07011925.1| transcription-repair coupling fa... 2462 0.0
gi|340626031|ref|YP_004744483.1| putative transcription-repair c... 2462 0.0
gi|289573660|ref|ZP_06453887.1| transcription-repair coupling fa... 2461 0.0
gi|240169894|ref|ZP_04748553.1| transcription-repair coupling fa... 2131 0.0
gi|336461334|gb|EGO40205.1| transcription-repair coupling factor... 2117 0.0
gi|41407085|ref|NP_959921.1| hypothetical protein MAP0987 [Mycob... 2106 0.0
gi|342861623|ref|ZP_08718269.1| transcription-repair coupling fa... 2093 0.0
gi|254774025|ref|ZP_05215541.1| hypothetical protein MaviaA2_050... 2088 0.0
gi|183984436|ref|YP_001852727.1| transcription-repair coupling f... 2088 0.0
gi|118619716|ref|YP_908048.1| transcription-repair coupling fact... 2078 0.0
gi|254819273|ref|ZP_05224274.1| hypothetical protein MintA_05066... 2071 0.0
gi|221229524|ref|YP_002502940.1| putative transcription-repair c... 2035 0.0
gi|15827046|ref|NP_301309.1| transcription-repair coupling facto... 2034 0.0
gi|296169893|ref|ZP_06851505.1| transcription-repair coupling fa... 2031 0.0
gi|126437189|ref|YP_001072880.1| transcription-repair coupling f... 1946 0.0
gi|108801209|ref|YP_641406.1| transcription-repair coupling fact... 1943 0.0
gi|120405727|ref|YP_955556.1| transcription-repair coupling fact... 1912 0.0
gi|118471657|ref|YP_889663.1| transcription-repair coupling fact... 1892 0.0
gi|333989623|ref|YP_004522237.1| transcription-repair coupling f... 1884 0.0
gi|315442986|ref|YP_004075865.1| transcription-repair coupling f... 1866 0.0
gi|145222538|ref|YP_001133216.1| transcription-repair coupling f... 1864 0.0
gi|169628250|ref|YP_001701899.1| transcription-repair coupling f... 1740 0.0
gi|226365233|ref|YP_002783016.1| transcription-repair coupling f... 1658 0.0
gi|111022724|ref|YP_705696.1| transcription repair coupling fact... 1654 0.0
gi|325676609|ref|ZP_08156287.1| transcription-repair coupling fa... 1640 0.0
gi|312138702|ref|YP_004006038.1| transcription repair coupling f... 1639 0.0
gi|229494982|ref|ZP_04388731.1| transcription-repair coupling fa... 1628 0.0
gi|226307788|ref|YP_002767748.1| transcription-repair coupling f... 1626 0.0
gi|54026849|ref|YP_121091.1| putative transcription-repair coupl... 1617 0.0
gi|296140872|ref|YP_003648115.1| transcription-repair coupling f... 1588 0.0
gi|289555197|ref|ZP_06444407.1| LOW QUALITY PROTEIN: transcripti... 1572 0.0
gi|289757102|ref|ZP_06516480.1| LOW QUALITY PROTEIN: transcripti... 1541 0.0
gi|343926966|ref|ZP_08766456.1| transcription-repair coupling fa... 1535 0.0
gi|262201520|ref|YP_003272728.1| transcription-repair coupling f... 1518 0.0
gi|333921138|ref|YP_004494719.1| transcription-repair coupling f... 1506 0.0
gi|326385186|ref|ZP_08206853.1| transcription-repair coupling fa... 1493 0.0
gi|134097431|ref|YP_001103092.1| transcription-repair coupling f... 1429 0.0
gi|256374814|ref|YP_003098474.1| transcription-repair coupling f... 1419 0.0
gi|319949680|ref|ZP_08023714.1| transcription-repair coupling fa... 1415 0.0
gi|302530260|ref|ZP_07282602.1| transcription-repair coupling fa... 1405 0.0
gi|300790028|ref|YP_003770319.1| transcription-repair coupling f... 1390 0.0
gi|340531704|gb|AEK46909.1| transcription-repair coupling factor... 1389 0.0
gi|257057197|ref|YP_003135029.1| transcription-repair coupling f... 1377 0.0
gi|25027590|ref|NP_737644.1| putative transcription-repair coupl... 1377 0.0
gi|259507006|ref|ZP_05749906.1| transcription-repair coupling fa... 1375 0.0
>gi|15608160|ref|NP_215536.1| transcription-repair coupling factor Mfd (TRCF) [Mycobacterium
tuberculosis H37Rv]
gi|15840448|ref|NP_335485.1| transcription-repair coupling factor [Mycobacterium tuberculosis
CDC1551]
gi|31792211|ref|NP_854704.1| transcription-repair coupling factor Mfd (TRCF) [Mycobacterium
bovis AF2122/97]
56 more sequence titles
Length=1234
Score = 2465 bits (6389), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1234/1234 (100%), Positives = 1234/1234 (100%), Gaps = 0/1234 (0%)
Query 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60
MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG
Sbjct 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60
Query 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120
PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH
Sbjct 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120
Query 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180
PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD
Sbjct 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180
Query 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240
MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF
Sbjct 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240
Query 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300
ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG
Sbjct 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300
Query 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360
HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL
Sbjct 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360
Query 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420
GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA
Sbjct 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420
Query 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480
HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP
Sbjct 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480
Query 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540
GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER
Sbjct 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540
Query 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600
TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN
Sbjct 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600
Query 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660
TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV
Sbjct 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660
Query 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720
KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER
Sbjct 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720
Query 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780
MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ
Sbjct 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780
Query 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840
RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP
Sbjct 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840
Query 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900
HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET
Sbjct 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900
Query 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960
TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA
Sbjct 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960
Query 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020
YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF
Sbjct 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020
Query 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080
DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG
Sbjct 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080
Query 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140
YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV
Sbjct 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140
Query 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELVQMVADLIT 1200
RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELVQMVADLIT
Sbjct 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELVQMVADLIT 1200
Query 1201 ALAGKPRQHIGITNPSPPGEDGRGRNTTIKERQP 1234
ALAGKPRQHIGITNPSPPGEDGRGRNTTIKERQP
Sbjct 1201 ALAGKPRQHIGITNPSPPGEDGRGRNTTIKERQP 1234
>gi|289442441|ref|ZP_06432185.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
T46]
gi|289753081|ref|ZP_06512459.1| transcription-repair coupling factor Mfd [Mycobacterium tuberculosis
EAS054]
gi|289415360|gb|EFD12600.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
T46]
gi|289693668|gb|EFD61097.1| transcription-repair coupling factor Mfd [Mycobacterium tuberculosis
EAS054]
Length=1234
Score = 2464 bits (6385), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1233/1234 (99%), Positives = 1233/1234 (99%), Gaps = 0/1234 (0%)
Query 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60
MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG
Sbjct 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60
Query 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120
PLLVVTATGREADDLAAELRGVFGD VALLPSWETLPHERLSPGVDTVGTRLMALRRLAH
Sbjct 61 PLLVVTATGREADDLAAELRGVFGDTVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120
Query 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180
PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD
Sbjct 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180
Query 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240
MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF
Sbjct 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240
Query 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300
ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG
Sbjct 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300
Query 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360
HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL
Sbjct 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360
Query 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420
GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA
Sbjct 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420
Query 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480
HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP
Sbjct 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480
Query 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540
GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER
Sbjct 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540
Query 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600
TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN
Sbjct 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600
Query 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660
TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV
Sbjct 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660
Query 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720
KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER
Sbjct 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720
Query 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780
MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ
Sbjct 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780
Query 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840
RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP
Sbjct 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840
Query 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900
HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET
Sbjct 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900
Query 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960
TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA
Sbjct 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960
Query 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020
YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF
Sbjct 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020
Query 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080
DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG
Sbjct 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080
Query 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140
YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV
Sbjct 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140
Query 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELVQMVADLIT 1200
RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELVQMVADLIT
Sbjct 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELVQMVADLIT 1200
Query 1201 ALAGKPRQHIGITNPSPPGEDGRGRNTTIKERQP 1234
ALAGKPRQHIGITNPSPPGEDGRGRNTTIKERQP
Sbjct 1201 ALAGKPRQHIGITNPSPPGEDGRGRNTTIKERQP 1234
>gi|339631081|ref|YP_004722723.1| transcription-repair coupling factor MFD [Mycobacterium africanum
GM041182]
gi|339330437|emb|CCC26102.1| putative transcription-repair coupling factor MFD (TRCF) [Mycobacterium
africanum GM041182]
Length=1234
Score = 2463 bits (6383), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1233/1234 (99%), Positives = 1233/1234 (99%), Gaps = 0/1234 (0%)
Query 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60
MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG
Sbjct 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60
Query 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120
PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH
Sbjct 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120
Query 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180
PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD
Sbjct 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180
Query 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240
MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF
Sbjct 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240
Query 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300
ACRELLLSEDVRARAAQLAARHPA ESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG
Sbjct 241 ACRELLLSEDVRARAAQLAARHPAVESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300
Query 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360
HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL
Sbjct 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360
Query 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420
GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA
Sbjct 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420
Query 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480
HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP
Sbjct 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480
Query 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540
GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER
Sbjct 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540
Query 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600
TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN
Sbjct 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600
Query 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660
TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV
Sbjct 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660
Query 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720
KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER
Sbjct 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720
Query 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780
MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ
Sbjct 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780
Query 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840
RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP
Sbjct 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840
Query 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900
HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET
Sbjct 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900
Query 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960
TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA
Sbjct 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960
Query 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020
YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF
Sbjct 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020
Query 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080
DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG
Sbjct 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080
Query 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140
YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV
Sbjct 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140
Query 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELVQMVADLIT 1200
RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELVQMVADLIT
Sbjct 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELVQMVADLIT 1200
Query 1201 ALAGKPRQHIGITNPSPPGEDGRGRNTTIKERQP 1234
ALAGKPRQHIGITNPSPPGEDGRGRNTTIKERQP
Sbjct 1201 ALAGKPRQHIGITNPSPPGEDGRGRNTTIKERQP 1234
>gi|254550004|ref|ZP_05140451.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
Length=1234
Score = 2462 bits (6382), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1233/1234 (99%), Positives = 1234/1234 (100%), Gaps = 0/1234 (0%)
Query 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60
MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG
Sbjct 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60
Query 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120
PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH
Sbjct 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120
Query 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180
PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD
Sbjct 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180
Query 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240
MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF
Sbjct 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240
Query 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300
ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG
Sbjct 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300
Query 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360
HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL
Sbjct 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360
Query 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420
GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA
Sbjct 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420
Query 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480
HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP
Sbjct 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480
Query 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540
GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER
Sbjct 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540
Query 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600
TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN
Sbjct 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600
Query 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660
TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV
Sbjct 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660
Query 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720
KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLA+QHLQTFGER
Sbjct 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAEQHLQTFGER 720
Query 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780
MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ
Sbjct 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780
Query 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840
RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP
Sbjct 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840
Query 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900
HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET
Sbjct 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900
Query 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960
TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA
Sbjct 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960
Query 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020
YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF
Sbjct 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020
Query 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080
DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG
Sbjct 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080
Query 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140
YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV
Sbjct 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140
Query 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELVQMVADLIT 1200
RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELVQMVADLIT
Sbjct 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELVQMVADLIT 1200
Query 1201 ALAGKPRQHIGITNPSPPGEDGRGRNTTIKERQP 1234
ALAGKPRQHIGITNPSPPGEDGRGRNTTIKERQP
Sbjct 1201 ALAGKPRQHIGITNPSPPGEDGRGRNTTIKERQP 1234
>gi|289761156|ref|ZP_06520534.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
GM 1503]
gi|289708662|gb|EFD72678.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
GM 1503]
Length=1234
Score = 2462 bits (6382), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1233/1234 (99%), Positives = 1233/1234 (99%), Gaps = 0/1234 (0%)
Query 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60
MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG
Sbjct 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60
Query 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120
PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH
Sbjct 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120
Query 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180
PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD
Sbjct 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180
Query 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240
MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF
Sbjct 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240
Query 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300
ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG
Sbjct 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300
Query 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360
HALLTDQLPDGTPVLVCDPEKVRTRAA LIRTGREFLEASWSVAALGTAENQAPVDVEQL
Sbjct 301 HALLTDQLPDGTPVLVCDPEKVRTRAAHLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360
Query 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420
GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA
Sbjct 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420
Query 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480
HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP
Sbjct 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480
Query 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540
GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER
Sbjct 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540
Query 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600
TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN
Sbjct 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600
Query 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660
TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV
Sbjct 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660
Query 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720
KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER
Sbjct 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720
Query 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780
MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ
Sbjct 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780
Query 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840
RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP
Sbjct 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840
Query 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900
HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET
Sbjct 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900
Query 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960
TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA
Sbjct 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960
Query 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020
YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF
Sbjct 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020
Query 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080
DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG
Sbjct 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080
Query 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140
YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV
Sbjct 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140
Query 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELVQMVADLIT 1200
RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELVQMVADLIT
Sbjct 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELVQMVADLIT 1200
Query 1201 ALAGKPRQHIGITNPSPPGEDGRGRNTTIKERQP 1234
ALAGKPRQHIGITNPSPPGEDGRGRNTTIKERQP
Sbjct 1201 ALAGKPRQHIGITNPSPPGEDGRGRNTTIKERQP 1234
>gi|298524516|ref|ZP_07011925.1| transcription-repair coupling factor [Mycobacterium tuberculosis
94_M4241A]
gi|298494310|gb|EFI29604.1| transcription-repair coupling factor [Mycobacterium tuberculosis
94_M4241A]
Length=1234
Score = 2462 bits (6381), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1233/1234 (99%), Positives = 1233/1234 (99%), Gaps = 0/1234 (0%)
Query 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60
MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG
Sbjct 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60
Query 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120
PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH
Sbjct 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120
Query 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180
PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD
Sbjct 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180
Query 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240
MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF
Sbjct 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240
Query 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300
ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG
Sbjct 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300
Query 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360
HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL
Sbjct 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360
Query 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420
GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA
Sbjct 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420
Query 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480
HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP
Sbjct 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480
Query 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540
GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER
Sbjct 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540
Query 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600
TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN
Sbjct 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600
Query 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660
TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV
Sbjct 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660
Query 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720
KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER
Sbjct 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720
Query 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780
MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ
Sbjct 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780
Query 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840
RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP
Sbjct 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840
Query 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900
HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET
Sbjct 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900
Query 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960
TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA
Sbjct 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960
Query 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020
YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF
Sbjct 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020
Query 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080
DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG
Sbjct 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080
Query 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140
YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV
Sbjct 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140
Query 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELVQMVADLIT 1200
RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGA RIRDVELVQMVADLIT
Sbjct 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGARRIRDVELVQMVADLIT 1200
Query 1201 ALAGKPRQHIGITNPSPPGEDGRGRNTTIKERQP 1234
ALAGKPRQHIGITNPSPPGEDGRGRNTTIKERQP
Sbjct 1201 ALAGKPRQHIGITNPSPPGEDGRGRNTTIKERQP 1234
>gi|340626031|ref|YP_004744483.1| putative transcription-repair coupling factor MFD (TRCF) [Mycobacterium
canettii CIPT 140010059]
gi|340004221|emb|CCC43361.1| putative transcription-repair coupling factor MFD (TRCF) [Mycobacterium
canettii CIPT 140010059]
Length=1234
Score = 2462 bits (6380), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1231/1234 (99%), Positives = 1234/1234 (100%), Gaps = 0/1234 (0%)
Query 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60
MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG
Sbjct 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60
Query 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120
PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH
Sbjct 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120
Query 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180
PDDA+LGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD
Sbjct 121 PDDARLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180
Query 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240
MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF
Sbjct 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240
Query 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300
ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEA+LPVLWSDG
Sbjct 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEALLPVLWSDG 300
Query 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360
HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL
Sbjct 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360
Query 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420
GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA
Sbjct 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420
Query 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480
HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP
Sbjct 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480
Query 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540
GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER
Sbjct 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540
Query 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600
TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN
Sbjct 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600
Query 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660
TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV
Sbjct 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660
Query 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720
KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER
Sbjct 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720
Query 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780
MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ
Sbjct 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780
Query 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840
RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP
Sbjct 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840
Query 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900
HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET
Sbjct 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900
Query 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960
TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA
Sbjct 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960
Query 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020
YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF
Sbjct 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020
Query 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080
DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG
Sbjct 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080
Query 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140
YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV
Sbjct 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140
Query 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELVQMVADLIT 1200
RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELVQMVADLI+
Sbjct 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELVQMVADLIS 1200
Query 1201 ALAGKPRQHIGITNPSPPGEDGRGRNTTIKERQP 1234
ALAGKPRQHIGITNPSPPGEDGRGRNTTIKERQP
Sbjct 1201 ALAGKPRQHIGITNPSPPGEDGRGRNTTIKERQP 1234
>gi|289573660|ref|ZP_06453887.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
K85]
gi|289538091|gb|EFD42669.1| transcription-repair coupling factor mfd [Mycobacterium tuberculosis
K85]
Length=1234
Score = 2461 bits (6378), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1232/1234 (99%), Positives = 1233/1234 (99%), Gaps = 0/1234 (0%)
Query 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60
MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG
Sbjct 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60
Query 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120
PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH
Sbjct 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120
Query 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180
PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD
Sbjct 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180
Query 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240
MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF
Sbjct 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240
Query 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300
ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG
Sbjct 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300
Query 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360
HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL
Sbjct 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360
Query 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420
GGSGFVELDQ RAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA
Sbjct 361 GGSGFVELDQARAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420
Query 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480
HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP
Sbjct 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480
Query 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540
GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER
Sbjct 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540
Query 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600
TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN
Sbjct 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600
Query 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660
TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV
Sbjct 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660
Query 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720
KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER
Sbjct 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720
Query 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780
MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ
Sbjct 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780
Query 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840
RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP
Sbjct 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840
Query 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900
HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET
Sbjct 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900
Query 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960
TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA
Sbjct 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960
Query 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020
YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF
Sbjct 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020
Query 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080
DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG
Sbjct 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080
Query 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140
YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV
Sbjct 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140
Query 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELVQMVADLIT 1200
RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELV+MVADLIT
Sbjct 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELVEMVADLIT 1200
Query 1201 ALAGKPRQHIGITNPSPPGEDGRGRNTTIKERQP 1234
ALAGKPRQHIGITNPSPPGEDGRGRNTTIKERQP
Sbjct 1201 ALAGKPRQHIGITNPSPPGEDGRGRNTTIKERQP 1234
>gi|240169894|ref|ZP_04748553.1| transcription-repair coupling factor Mfd (TrcF) [Mycobacterium
kansasii ATCC 12478]
Length=1238
Score = 2131 bits (5522), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1074/1244 (87%), Positives = 1147/1244 (93%), Gaps = 19/1244 (1%)
Query 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60
MTAPG A DTPIAGLVELAL+APTFQQL+ RA RPD+LTL+ PASARL VASALAR G
Sbjct 1 MTAPGAASPDTPIAGLVELALAAPTFQQLIARASDRPDDLTLVGPASARLFVASALARLG 60
Query 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120
PLLVVTATGREADDL AEL+GV G AVA+ PSWETLPHERLSPGVDTVG RL+ LRRLA+
Sbjct 61 PLLVVTATGREADDLTAELQGVLGGAVAVFPSWETLPHERLSPGVDTVGARLLVLRRLAY 120
Query 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180
PDDA+LGP L VVVT+VRSLLQPMTPQLG EPL L+VG E FDGV+ARLVELAYTRVD
Sbjct 121 PDDARLGPSLRVVVTAVRSLLQPMTPQLGRQEPLALSVGQEIDFDGVIARLVELAYTRVD 180
Query 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240
MVGRRGEFAVRGGILD+FAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEI++ TLVA
Sbjct 181 MVGRRGEFAVRGGILDVFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVDTLVAV 240
Query 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLW--S 298
ACRELLL++DVR RAA+LAA+HPAAE+ VTGS SDMLAKLAEGI VDGMEA+LPVL
Sbjct 241 ACRELLLTDDVRVRAAELAAQHPAAENAVTGSVSDMLAKLAEGIPVDGMEALLPVLHPAQ 300
Query 299 DG----HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTA-ENQA 353
DG H LLTDQLP+GTPVL+CDPEK+RTRAADLI+TGREFLEASWSVAALG+ ENQA
Sbjct 301 DGANGAHTLLTDQLPEGTPVLLCDPEKIRTRAADLIKTGREFLEASWSVAALGSGPENQA 360
Query 354 PVDVEQLGGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDE 413
PVDVEQLGGSGF ELD+V AA +GHPWWTLSQLS E+ +ELDVR +PSARGHQRDID
Sbjct 361 PVDVEQLGGSGFAELDEVHTAATGSGHPWWTLSQLSGEAVLELDVRPSPSARGHQRDIDG 420
Query 414 IFAMLRAHIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPL 473
IFAMLRAH++TGGYA +VAPGTGTAHR+VERL+ESD PA MLDPG PK G+VGV +GPL
Sbjct 421 IFAMLRAHVSTGGYAVMVAPGTGTAHRMVERLTESDIPAAMLDPGATPKLGLVGVFKGPL 480
Query 474 RDGVIIPG----ANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQH 529
DG+++PG A+LVV+TE+DLTGSRV+AAEGKRLAAKRRN VDPLALTAGDLVVHDQH
Sbjct 481 HDGIVVPGVVPGADLVVVTESDLTGSRVTAAEGKRLAAKRRNTVDPLALTAGDLVVHDQH 540
Query 530 GIGRFVEMVERTVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPA 589
GIGRFVEMVERTVGGARREYLVLEYAS+KRGG +TDKLYVPMDSLDQLSRYVGGQAPA
Sbjct 541 GIGRFVEMVERTVGGARREYLVLEYASSKRGG-QNSTDKLYVPMDSLDQLSRYVGGQAPA 599
Query 590 LSRLGGSDWANTKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTE 649
LSRLGGSDWANTKTKARRAVREIAGELVSLYAKRQAS GHAF+PDTPWQAE+EDAFGFTE
Sbjct 600 LSRLGGSDWANTKTKARRAVREIAGELVSLYAKRQASSGHAFAPDTPWQAEMEDAFGFTE 659
Query 650 TVDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLL 709
TVDQLTAI+EVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLL
Sbjct 660 TVDQLTAIQEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLL 719
Query 710 ADQHLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWK 769
ADQHLQTF +RMSGFPVT+KGLSRFTDAAESR VIDGLADGSVDIVIGTHRLLQTGVRWK
Sbjct 720 ADQHLQTFAQRMSGFPVTVKGLSRFTDAAESRTVIDGLADGSVDIVIGTHRLLQTGVRWK 779
Query 770 DLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPE 829
DLGLVVVDEEQRFGVEHKEHIKS+RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPE
Sbjct 780 DLGLVVVDEEQRFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPE 839
Query 830 ERYPVLTYVGPHDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVA 889
ERYPVLTYVGPHDDKQ+AAALRRELLRDGQAFYVHNRVSSID AAA VRELVPEARVVVA
Sbjct 840 ERYPVLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIDRAAAHVRELVPEARVVVA 899
Query 890 HGQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRG 949
HGQMPE+LLE TVQ FWNRE+DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRG
Sbjct 900 HGQMPEELLERTVQGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRG 959
Query 950 RVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGI 1009
RVGRSRERGYAYFLYPPQ PLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLG+
Sbjct 960 RVGRSRERGYAYFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGV 1019
Query 1010 EQSGHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPD 1069
EQSGHVAGVGFDLYVRLVGEA+E AYRAAADG+TV TAEEPKD+RIDLPVDAHLPPD
Sbjct 1020 EQSGHVAGVGFDLYVRLVGEAVE----AYRAAADGKTVTTAEEPKDLRIDLPVDAHLPPD 1075
Query 1070 YIASDRLRLEGYRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGI 1129
YI SDRLRLE YRRLAAASSD EVAAVV+EL DRYG LPEPARRL AVARLRLLCR SGI
Sbjct 1076 YIGSDRLRLEAYRRLAAASSDNEVAAVVEELNDRYGPLPEPARRLVAVARLRLLCRDSGI 1135
Query 1130 TDVTAASAATVRLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDV 1189
T+V+A SAATVRL+P+TLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGG+GAPRIRDV
Sbjct 1136 TEVSAPSAATVRLAPMTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGIGAPRIRDV 1195
Query 1190 ELVQMVADLITALAGKPRQHIGITNPSPPGEDGRGRNTTIKERQ 1233
ELVQMVADL+TALAG P++ IGIT+ S G+D R + KER+
Sbjct 1196 ELVQMVADLVTALAGIPQKDIGITSSS--GDDA-DRPVSSKERR 1236
>gi|336461334|gb|EGO40205.1| transcription-repair coupling factor Mfd [Mycobacterium avium
subsp. paratuberculosis S397]
Length=1219
Score = 2117 bits (5486), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1056/1226 (87%), Positives = 1133/1226 (93%), Gaps = 9/1226 (0%)
Query 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60
MTAPG A +TPIAGLVELAL+APTFQQL+ A P +L+L+ PAS RL VASALAR G
Sbjct 1 MTAPGAARPETPIAGLVELALTAPTFQQLIDTAAASPADLSLVGPASTRLFVASALARLG 60
Query 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120
PLLVVTATGREADDL AELRGV GDAVA+ PSWETLPHERLSPGVDTVG RL LRRLAH
Sbjct 61 PLLVVTATGREADDLTAELRGVVGDAVAVFPSWETLPHERLSPGVDTVGARLTVLRRLAH 120
Query 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180
PDDA+LGPPL VVVT+VRSLLQPMTPQLG++EP+TL+VG E F+ V+ARLVELAY+RVD
Sbjct 121 PDDARLGPPLQVVVTAVRSLLQPMTPQLGLVEPVTLSVGQEIEFEHVIARLVELAYSRVD 180
Query 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240
MVGRRGEFAVRGGILD+F PTAEHPVRVEFWGDE++EMRMFSVADQRSIPEI + T++A
Sbjct 181 MVGRRGEFAVRGGILDVFPPTAEHPVRVEFWGDEVSEMRMFSVADQRSIPEIAVDTVIAV 240
Query 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300
CRELLL+EDVRARAA+LAA+HPA+E +TGS SDMLAK+A+GIAVDGMEA+LPVL
Sbjct 241 PCRELLLTEDVRARAAELAAQHPASEPAITGSVSDMLAKIADGIAVDGMEALLPVLRPGK 300
Query 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360
LLTDQL D TPVL+CDPEK+RTRAADLI+TGREFLEASWSVAALGT ENQAP+DVEQL
Sbjct 301 QVLLTDQLADRTPVLLCDPEKIRTRAADLIKTGREFLEASWSVAALGTLENQAPIDVEQL 360
Query 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420
GGSGF ELD+VRAAA R GHPWWTLSQLSDESA+ELDVRAAPSARGHQ DID IFAMLRA
Sbjct 361 GGSGFAELDEVRAAAVRGGHPWWTLSQLSDESAVELDVRAAPSARGHQHDIDGIFAMLRA 420
Query 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480
H++TGG+AA+VAPGTGTAHRVVERL+E DTPA ML+ G AP+ GVVGVL+GPL DG++IP
Sbjct 421 HVSTGGHAAVVAPGTGTAHRVVERLAECDTPAAMLESGAAPRAGVVGVLKGPLHDGIVIP 480
Query 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540
GANLVVITETDLTGSRV+A EGKRLAAKRRN VDPLALTAGDLVVHDQHGIGRFVEM ER
Sbjct 481 GANLVVITETDLTGSRVAAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMTER 540
Query 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600
TVGGARREYLVLEYAS+KRGGG +DKLYVPMDSLDQLSRYVGGQAPALS+LGGSDWAN
Sbjct 541 TVGGARREYLVLEYASSKRGGG---SDKLYVPMDSLDQLSRYVGGQAPALSKLGGSDWAN 597
Query 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660
TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAE+EDAFG+TETVDQLTAI EV
Sbjct 598 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAEMEDAFGYTETVDQLTAITEV 657
Query 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720
K+DMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF +R
Sbjct 658 KSDMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDR 717
Query 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780
M+GFPVT+KGLSRFTDAAESRAVI+GLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ
Sbjct 718 MAGFPVTVKGLSRFTDAAESRAVIEGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 777
Query 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840
RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP
Sbjct 778 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 837
Query 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900
HDDKQ+AAALRRELLRDGQAFYVHNRVSSID AAARVRELVPEARVVVAHGQMPE+ LE
Sbjct 838 HDDKQVAAALRRELLRDGQAFYVHNRVSSIDRAAARVRELVPEARVVVAHGQMPEERLER 897
Query 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960
TVQ FWNRE+DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA
Sbjct 898 TVQGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 957
Query 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020
YFLYPP PLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLG+EQSGHVAGVGF
Sbjct 958 YFLYPPHAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGF 1017
Query 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080
DLYVRLVGEA+E AYRAAADGQTV TAEEPKDVRIDLPVDAHLPPDYIASDRLRLE
Sbjct 1018 DLYVRLVGEAVE----AYRAAADGQTVTTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEA 1073
Query 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140
YRRLAAA SD E+ AVV+EL DRYGALPEPA RL AVARLRLLCR +GIT+V+A SAATV
Sbjct 1074 YRRLAAAGSDDEIDAVVEELVDRYGALPEPALRLVAVARLRLLCRAAGITEVSAPSAATV 1133
Query 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELVQMVADLIT 1200
RLSP+TLPDSAQVRLKRMYP A YRATT+TVQVPIPRAGG+GAPR+RDVELVQMVA+L+T
Sbjct 1134 RLSPITLPDSAQVRLKRMYPAASYRATTSTVQVPIPRAGGVGAPRLRDVELVQMVANLVT 1193
Query 1201 ALAGKPRQHIGITNP--SPPGEDGRG 1224
AL GKP+ +G P + E+GRG
Sbjct 1194 ALQGKPQTDVGTGTPVAAMASEEGRG 1219
>gi|41407085|ref|NP_959921.1| hypothetical protein MAP0987 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41395436|gb|AAS03304.1| Mfd [Mycobacterium avium subsp. paratuberculosis K-10]
Length=1221
Score = 2106 bits (5457), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1055/1228 (86%), Positives = 1133/1228 (93%), Gaps = 11/1228 (0%)
Query 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60
MTAPG A +TPIAGLVELAL+APTFQQL+ A P +L+L+ PAS RL VASALAR G
Sbjct 1 MTAPGAARPETPIAGLVELALTAPTFQQLIDTAAASPADLSLVGPASTRLFVASALARLG 60
Query 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120
PLLVVTATGREADDL AELRGV GDAVA+ PSWETLPHERLSPGVDTVG RL LRRLAH
Sbjct 61 PLLVVTATGREADDLTAELRGVVGDAVAVFPSWETLPHERLSPGVDTVGARLTVLRRLAH 120
Query 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180
PDDA+LGPPL VVVT+VRSLLQPMTPQLG++EP+TL+VG E F+ V+ARLVELAY+RVD
Sbjct 121 PDDARLGPPLQVVVTAVRSLLQPMTPQLGLVEPVTLSVGQEIEFEHVIARLVELAYSRVD 180
Query 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240
MVGRRGEFAVRGGILD+F PTAEHPVRVEFWGDE++EMRMFSVADQRSIPEI + T+++
Sbjct 181 MVGRRGEFAVRGGILDVFPPTAEHPVRVEFWGDEVSEMRMFSVADQRSIPEIAVDTVISV 240
Query 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300
CRELLL+EDVRARAA+LAA+HPA+E +TGS SDMLAK+A+GIAVDGMEA+LPVL
Sbjct 241 PCRELLLTEDVRARAAELAAQHPASEPAITGSVSDMLAKIADGIAVDGMEALLPVLRPGK 300
Query 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360
LLTDQL D TPVL+CDPEK+RTRAADLI+TGREFLEASWSVAALGT ENQAP+DVEQL
Sbjct 301 QVLLTDQLADRTPVLLCDPEKIRTRAADLIKTGREFLEASWSVAALGTLENQAPIDVEQL 360
Query 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420
GGSGF ELD+VRAAA R GHPWWTLSQLSDESA+ELDVRAAPSARGHQ DID IFAMLRA
Sbjct 361 GGSGFAELDEVRAAAVRGGHPWWTLSQLSDESAVELDVRAAPSARGHQHDIDGIFAMLRA 420
Query 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480
H++TGG+AA+VAPGTGTAHRVVERL+E DTPA ML+ G AP+ GVVGVL+GPL DG++IP
Sbjct 421 HVSTGGHAAVVAPGTGTAHRVVERLAECDTPAAMLESGAAPRAGVVGVLKGPLHDGIVIP 480
Query 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540
GANLVVITETDLTGSRV+A EGKRLAAKRRN VDPLALTAGDLVVHDQHGIGRFVEM ER
Sbjct 481 GANLVVITETDLTGSRVAAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMTER 540
Query 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600
TVGGARREYLVLEYAS+KRGGG +DKLYVPMDSLDQLSRYVGGQAPALS+LGGSDWAN
Sbjct 541 TVGGARREYLVLEYASSKRGGG---SDKLYVPMDSLDQLSRYVGGQAPALSKLGGSDWAN 597
Query 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660
TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAE+EDAFG+TETVDQLTAI EV
Sbjct 598 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAEMEDAFGYTETVDQLTAITEV 657
Query 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720
K+DMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF +R
Sbjct 658 KSDMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDR 717
Query 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780
M+GFPVT+KGLSRFTDAAESRAVI+GLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ
Sbjct 718 MAGFPVTVKGLSRFTDAAESRAVIEGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 777
Query 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840
RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP
Sbjct 778 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 837
Query 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEAR--VVVAHGQMPEDLL 898
HDDKQ+AAALRRELLRDGQAFYVHNRVSSID AAARVRELVPEAR VVVAHGQMPE+ L
Sbjct 838 HDDKQVAAALRRELLRDGQAFYVHNRVSSIDRAAARVRELVPEARVVVVVAHGQMPEERL 897
Query 899 ETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERG 958
E TVQ FWNRE+DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERG
Sbjct 898 ERTVQGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERG 957
Query 959 YAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGV 1018
YAYFLYPP PLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLG+EQSGHVAGV
Sbjct 958 YAYFLYPPHAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGV 1017
Query 1019 GFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRL 1078
GFDLYVRLVGEA+E AYRAAADGQTV TAEEPKDVRIDLPVDAHLPPDYIASDRLRL
Sbjct 1018 GFDLYVRLVGEAVE----AYRAAADGQTVTTAEEPKDVRIDLPVDAHLPPDYIASDRLRL 1073
Query 1079 EGYRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAA 1138
E YRRLAAA SD E+ AVV+EL DRYGALPEPA RL AVARLRLLCR +GIT+V+A SAA
Sbjct 1074 EAYRRLAAAGSDDEIDAVVEELVDRYGALPEPALRLVAVARLRLLCRAAGITEVSAPSAA 1133
Query 1139 TVRLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELVQMVADL 1198
TVRLSP+TLPDSAQVRLKRMYP A YRATT+TVQVPIPRAGG+GAPR+RDVELVQMVA+L
Sbjct 1134 TVRLSPITLPDSAQVRLKRMYPAASYRATTSTVQVPIPRAGGVGAPRLRDVELVQMVANL 1193
Query 1199 ITALAGKPRQHIGITNP--SPPGEDGRG 1224
+TAL GKP+ +G P + E+GRG
Sbjct 1194 VTALQGKPQTDVGTGTPVAAMASEEGRG 1221
>gi|342861623|ref|ZP_08718269.1| transcription-repair coupling factor [Mycobacterium colombiense
CECT 3035]
gi|342130757|gb|EGT84053.1| transcription-repair coupling factor [Mycobacterium colombiense
CECT 3035]
Length=1221
Score = 2093 bits (5422), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1038/1214 (86%), Positives = 1118/1214 (93%), Gaps = 10/1214 (0%)
Query 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60
MTAPG A +TPIAGLVELAL+APTFQQL+ A P EL L+ PASARL VASALAR G
Sbjct 5 MTAPGAARPETPIAGLVELALTAPTFQQLIDSASASPAELHLVGPASARLFVASALARLG 64
Query 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120
PLLVVTATGREADDL AELRGVFGD+VA+ PSWETLPHERLSPGVDTVG RL LRRLAH
Sbjct 65 PLLVVTATGREADDLTAELRGVFGDSVAVFPSWETLPHERLSPGVDTVGARLTVLRRLAH 124
Query 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180
PDD++LGPPL VVVT+VRSLLQPMTPQLG++EP+TL VG E F+GV+ RL ELAYTRVD
Sbjct 125 PDDSRLGPPLQVVVTAVRSLLQPMTPQLGLVEPVTLNVGTEIEFEGVITRLAELAYTRVD 184
Query 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240
MVGRRGEFAVRGGILD+F PTAEHPVRVEFWGDE++EMRMFSVADQRSIPEI++ TL+A
Sbjct 185 MVGRRGEFAVRGGILDVFPPTAEHPVRVEFWGDEVSEMRMFSVADQRSIPEIEVDTLIAV 244
Query 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300
CRELLL+++VR RAA+LAARH + E +TGS SDMLAK+ EGI+VDGMEA+LPVL
Sbjct 245 PCRELLLTDEVRERAAELAARHRSTEPAITGSVSDMLAKIGEGISVDGMEALLPVLRPGE 304
Query 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360
H LLTDQL + TPVL+CDPEKVRTRAADLI+TG EFLEASWSVAALGT APVDV Q
Sbjct 305 HVLLTDQLAERTPVLLCDPEKVRTRAADLIKTGSEFLEASWSVAALGT---DAPVDVAQF 361
Query 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420
GGSGF ELD+VRAAAAR GHPWWTLSQLSDESA+ELD+R+APSARGHQ DID IFAMLRA
Sbjct 362 GGSGFAELDEVRAAAARAGHPWWTLSQLSDESAVELDIRSAPSARGHQHDIDGIFAMLRA 421
Query 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480
H++TGGYA +VAPGTGTAHRVVERL+E DTPA ML+ G APK GVVGVL+GPL DGVIIP
Sbjct 422 HVSTGGYAVVVAPGTGTAHRVVERLAECDTPAAMLESGAAPKAGVVGVLKGPLHDGVIIP 481
Query 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540
GA LVVITETDLTGSRV+A EGKRLAAKRRN VDPLAL+AGDLVVHDQHGIGRFVEMVER
Sbjct 482 GATLVVITETDLTGSRVTAVEGKRLAAKRRNTVDPLALSAGDLVVHDQHGIGRFVEMVER 541
Query 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600
TVGGARREYLVLEYAS+KRGGG +DKLYVPMDSLDQLSRYVGGQAPALS+LGGSDW N
Sbjct 542 TVGGARREYLVLEYASSKRGGG---SDKLYVPMDSLDQLSRYVGGQAPALSKLGGSDWTN 598
Query 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660
TKTKARRAVREIAGELVSLYAKRQASPGHAF PDTPWQAE+EDAFG+TETVDQLTAI EV
Sbjct 599 TKTKARRAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGYTETVDQLTAITEV 658
Query 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720
K+DMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF +R
Sbjct 659 KSDMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFSDR 718
Query 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780
M+GFPVT+KGLSRFTD ES+AV++GLA+GSVD+VIGTHRLLQTGVRWKDLGLVVVDEEQ
Sbjct 719 MTGFPVTVKGLSRFTDPTESKAVVEGLAEGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQ 778
Query 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840
RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP
Sbjct 779 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 838
Query 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900
HDDKQ+AAALRRELLRDGQ FYVHNRVSSID AAAR+RELVPEARVVVAHGQMPE+ LE
Sbjct 839 HDDKQVAAALRRELLRDGQVFYVHNRVSSIDRAAARIRELVPEARVVVAHGQMPEERLER 898
Query 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960
TVQ FWNRE+DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA
Sbjct 899 TVQGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 958
Query 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020
YFLYPP PLTETAYDRLATIAQNNELGAGMAVA+KDLEIRGAGNVLG+EQSGHVAGVGF
Sbjct 959 YFLYPPHSPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGVEQSGHVAGVGF 1018
Query 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080
DLYVRLVGEA+E AYRAAADGQTV TAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG
Sbjct 1019 DLYVRLVGEAVE----AYRAAADGQTVTTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1074
Query 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140
YRRLAAA+SD E+ AVV+EL DRYGALPEPA RL AVARLRLLCR +GIT+V+AASA+TV
Sbjct 1075 YRRLAAAASDGEIDAVVEELIDRYGALPEPALRLVAVARLRLLCRAAGITEVSAASASTV 1134
Query 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELVQMVADLIT 1200
RLSP+TLPDSAQVRLKRMYP A YRATT+TVQVPIPRAGG+GAPR+RDVELVQMVA+L+T
Sbjct 1135 RLSPMTLPDSAQVRLKRMYPAASYRATTSTVQVPIPRAGGVGAPRLRDVELVQMVANLVT 1194
Query 1201 ALAGKPRQHIGITN 1214
AL GKP+Q I IT+
Sbjct 1195 ALQGKPQQEIDITS 1208
>gi|254774025|ref|ZP_05215541.1| hypothetical protein MaviaA2_05024 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=1201
Score = 2088 bits (5410), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1040/1208 (87%), Positives = 1118/1208 (93%), Gaps = 9/1208 (0%)
Query 19 LALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQGPLLVVTATGREADDLAAE 78
+AL+APTFQQL+ A P +L+L+ PASARL VASALAR GPLLVVTATGREADDL AE
Sbjct 1 MALTAPTFQQLIDTAAASPADLSLVGPASARLFVASALARLGPLLVVTATGREADDLTAE 60
Query 79 LRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAHPDDAQLGPPLGVVVTSVR 138
LRGV GDAVA+ PSWETLPHERLSPGVDTVG RL LRRLAHPDDA+LGPPL VVVT+VR
Sbjct 61 LRGVVGDAVAVFPSWETLPHERLSPGVDTVGARLTVLRRLAHPDDARLGPPLQVVVTAVR 120
Query 139 SLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVDMVGRRGEFAVRGGILDIF 198
SLLQPMTPQLG++EP+TL+VG E F+ V+ARLVELAY+RVDMVGRRGEFAVRGGILD+F
Sbjct 121 SLLQPMTPQLGLVEPVTLSVGQEIEFEHVIARLVELAYSRVDMVGRRGEFAVRGGILDVF 180
Query 199 APTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAFACRELLLSEDVRARAAQL 258
PTAEHPVRVEFWGDE++EMRMFSVADQRSIPEI + T++A CRELLL+EDVRARAA+L
Sbjct 181 PPTAEHPVRVEFWGDEVSEMRMFSVADQRSIPEIAVDTVIAVPCRELLLTEDVRARAAEL 240
Query 259 AARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDGHALLTDQLPDGTPVLVCD 318
AA+HPA+E +TGS SDMLAK+A+GIAVDGMEA+LPVL LLTDQL + TPVL+CD
Sbjct 241 AAQHPASEPAITGSVSDMLAKIADGIAVDGMEALLPVLRPGKQVLLTDQLAERTPVLLCD 300
Query 319 PEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQLGGSGFVELDQVRAAAART 378
PEK+RTRAADLI+TGREFLEASWSVAALGT ENQAP+DVEQLGGSGF ELD+VRAAA R
Sbjct 301 PEKIRTRAADLIKTGREFLEASWSVAALGTLENQAPIDVEQLGGSGFAELDEVRAAAVRG 360
Query 379 GHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRAHIATGGYAALVAPGTGTA 438
GHPWWTLSQLSDESA+ELDVRAAPSARGHQ DID IFAMLRAH++TGG+AA+VAPGTGTA
Sbjct 361 GHPWWTLSQLSDESAVELDVRAAPSARGHQHDIDGIFAMLRAHVSTGGHAAVVAPGTGTA 420
Query 439 HRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIPGANLVVITETDLTGSRVS 498
HRVVERL+E DTPA ML+ G AP+ GVVGVL+GPL DG++IPGANLVVITETDLTGSRV+
Sbjct 421 HRVVERLAECDTPAAMLESGAAPRAGVVGVLKGPLHDGIVIPGANLVVITETDLTGSRVA 480
Query 499 AAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASAK 558
A EGKRLAAKRRN VDPLALTAGDLVVHDQHGIGRFVEM ERT GGARREYLVLEYAS+K
Sbjct 481 AVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMTERTGGGARREYLVLEYASSK 540
Query 559 RGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWANTKTKARRAVREIAGELVS 618
RGGG +DKLYVPMDSLDQLSRYVGGQAPALS+LGGSDWANTKTKARRAVREIAGELVS
Sbjct 541 RGGG---SDKLYVPMDSLDQLSRYVGGQAPALSKLGGSDWANTKTKARRAVREIAGELVS 597
Query 619 LYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEVKADMEKPIPMDRVICGDV 678
LYAKRQASPGHAFSPDTPWQAE+EDAFG+TETVDQLTAI EVK+DMEKPIPMDRVICGDV
Sbjct 598 LYAKRQASPGHAFSPDTPWQAEMEDAFGYTETVDQLTAITEVKSDMEKPIPMDRVICGDV 657
Query 679 GYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGERMSGFPVTIKGLSRFTDAA 738
GYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF +RM+GFPVT+KGLSRFTDAA
Sbjct 658 GYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDRMAGFPVTVKGLSRFTDAA 717
Query 739 ESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVD 798
ESRAVI+GLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVD
Sbjct 718 ESRAVIEGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVD 777
Query 799 VLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQIAAALRRELLRDG 858
VLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQ+AAALRRELLRDG
Sbjct 778 VLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQVAAALRRELLRDG 837
Query 859 QAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLETTVQRFWNREHDILVCTTI 918
QAFYVHNRVSSID AAARVRELVPEARVVVAHGQMPE+ LE TVQ FWNRE+DILVCTTI
Sbjct 838 QAFYVHNRVSSIDRAAARVRELVPEARVVVAHGQMPEERLERTVQGFWNREYDILVCTTI 897
Query 919 VETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPPQVPLTETAYDRL 978
VETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP PLTETAYDRL
Sbjct 898 VETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPPHAPLTETAYDRL 957
Query 979 ATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGFDLYVRLVGEALETYRDAY 1038
ATIAQNNELGAGMAVALKDLEIRGAGNVLG+EQSGHVAGVGFDLYVRLVGEA+E AY
Sbjct 958 ATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGFDLYVRLVGEAVE----AY 1013
Query 1039 RAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEGYRRLAAASSDREVAAVVD 1098
RAAADGQTV TAEEPKDVRIDLPVDAHLPPDYIASDRLRLE YRRLAAA SD E+ AVV+
Sbjct 1014 RAAADGQTVTTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEAYRRLAAAGSDDEIDAVVE 1073
Query 1099 ELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATVRLSPLTLPDSAQVRLKRM 1158
EL DRYGALPEPA RL AVARLRLLCR +GIT+V+A SAATVRLSP+TLPDSAQVRLKRM
Sbjct 1074 ELVDRYGALPEPALRLVAVARLRLLCRAAGITEVSAPSAATVRLSPITLPDSAQVRLKRM 1133
Query 1159 YPGAHYRATTATVQVPIPRAGGLGAPRIRDVELVQMVADLITALAGKPRQHIGITNP--S 1216
YP A YRATT+TVQVPIPRAGG+GAPR+RDVELVQMVA+L+TAL GKP+ +G P +
Sbjct 1134 YPAASYRATTSTVQVPIPRAGGVGAPRLRDVELVQMVANLVTALQGKPQTDVGTGAPVAA 1193
Query 1217 PPGEDGRG 1224
E+GRG
Sbjct 1194 MASEEGRG 1201
>gi|183984436|ref|YP_001852727.1| transcription-repair coupling factor Mfd (TrcF) [Mycobacterium
marinum M]
gi|183177762|gb|ACC42872.1| transcription-repair coupling factor Mfd (TrcF) [Mycobacterium
marinum M]
Length=1222
Score = 2088 bits (5410), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1059/1233 (86%), Positives = 1135/1233 (93%), Gaps = 13/1233 (1%)
Query 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60
MTAPG A DTPIAGLV+LAL+APTFQQL+ RA RPDELTL+ PASAR VASALA+QG
Sbjct 1 MTAPGAASPDTPIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQG 60
Query 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120
PLLVVTATGREADD+ AELRGVFG+AVAL PSWETLPHERLSPGVDTVG RL+ LRRLAH
Sbjct 61 PLLVVTATGREADDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGARLLLLRRLAH 120
Query 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180
P+D +LGPPL VVVT+VRSLLQPMTPQLG EP++L+VG E FD V+ARLVELAYTRVD
Sbjct 121 PEDTRLGPPLRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVD 180
Query 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240
MVGRRGEFAVRGGILD+FAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEI++ TLVA
Sbjct 181 MVGRRGEFAVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAV 240
Query 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300
ACRELLL+EDVRARAA LAA+HPA+E+TVTGS DMLAKLAEGI DGMEA+LPVL D
Sbjct 241 ACRELLLTEDVRARAAALAAQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDD 300
Query 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360
HALLTDQL +GTPVLVCDPEKVRTRAADLI+TGREFLEASWSVAA+GT APVDVE L
Sbjct 301 HALLTDQLAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGT---DAPVDVEAL 357
Query 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420
GGSGF EL+QV+ AA+ +GHPWWTLSQLS+ESA EL+VRAAPSARGHQ+DID+IFAMLRA
Sbjct 358 GGSGFAELEQVQTAASSSGHPWWTLSQLSEESATELEVRAAPSARGHQKDIDDIFAMLRA 417
Query 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480
H++TGGYA +V PGTGTAHR+VERL+ESD PA ML+PG APK GVVGVL+GPLRDGVI+P
Sbjct 418 HVSTGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVP 477
Query 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540
GANLVV+TET+LTG+R +A EGKRLAAKRRN VDPLALTAGDLVVHDQHGIGRFVEMVER
Sbjct 478 GANLVVVTETNLTGNRATAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVER 537
Query 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600
TVGGARREYLVLEYASAKRGGG +DKLYVPMDSLDQLSRYVGGQAPALSRLGGSDW N
Sbjct 538 TVGGARREYLVLEYASAKRGGG---SDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWTN 594
Query 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660
TKTKAR+AVREIAGELV+LYAKRQASPGHAF+PDTPWQAE+EDAFGFTETVDQLTAI EV
Sbjct 595 TKTKARKAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAITEV 654
Query 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720
K DMEK IPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF +R
Sbjct 655 KGDMEKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDR 714
Query 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780
M+GFPVT+KGLSRFTD AESR VI+G+ADGSVD+VIGTHRLLQTGVRWKDLGLVVVDEEQ
Sbjct 715 MAGFPVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQ 774
Query 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840
RFGVEHKEHIKSLR+HVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP
Sbjct 775 RFGVEHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 834
Query 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900
HDDKQ+AAALRRELLRDGQAFYVHNRVSSID AAR+R+LVPEARVVVAHGQMPEDLLE
Sbjct 835 HDDKQVAAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDLLER 894
Query 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960
TVQ FW RE DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA
Sbjct 895 TVQGFWQREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 954
Query 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020
YFLYPPQ PLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLG+EQSGHVAGVGF
Sbjct 955 YFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGF 1014
Query 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080
DLYVRLVGEA+E AYRAAADG+TV T EEPKDVRIDLPVDAHLPPDYI SDRLRLE
Sbjct 1015 DLYVRLVGEAVE----AYRAAADGKTVTTPEEPKDVRIDLPVDAHLPPDYIGSDRLRLEA 1070
Query 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140
YRRLAAA+SD VAAVVDEL DRYGALPEPA RL AVARLRLLCR SGITDV+A S+ATV
Sbjct 1071 YRRLAAATSDSGVAAVVDELIDRYGALPEPALRLVAVARLRLLCRASGITDVSAPSSATV 1130
Query 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELVQMVADLIT 1200
RL+P+ LPDSAQVRLKRMYPG HYRATT+TVQVPIPR GG+GAPRIRDVELVQMVA+L+T
Sbjct 1131 RLAPMDLPDSAQVRLKRMYPGGHYRATTSTVQVPIPRDGGVGAPRIRDVELVQMVANLVT 1190
Query 1201 ALAGKPRQHIGITNPSPPGEDGRGRNTTIKERQ 1233
ALAGKP+Q IG T+ S ED + KERQ
Sbjct 1191 ALAGKPQQDIGRTSLS---EDDAAATASGKERQ 1220
>gi|118619716|ref|YP_908048.1| transcription-repair coupling factor Mfd (TrcF) [Mycobacterium
ulcerans Agy99]
gi|118571826|gb|ABL06577.1| transcription-repair coupling factor Mfd (TrcF) [Mycobacterium
ulcerans Agy99]
Length=1222
Score = 2078 bits (5383), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1054/1233 (86%), Positives = 1131/1233 (92%), Gaps = 13/1233 (1%)
Query 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60
MTAPG A DTPIAGLV+LAL+APTFQQL+ RA RPDELTL+ PASAR VASALA+QG
Sbjct 1 MTAPGAASPDTPIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQG 60
Query 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120
PLLVVTATGREADD+ AELRGVFG+AVAL PSWETLPHERLSPGVDTVG RL+ LRRLAH
Sbjct 61 PLLVVTATGREADDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGARLLLLRRLAH 120
Query 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180
PDD +LGPPL VVVT+VRSLLQPMTPQLG EP++L+VG E FD V+ARLVELAYTRVD
Sbjct 121 PDDTRLGPPLRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVD 180
Query 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240
MVGRRGEFAVRGGILD+FAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEI++ TLVA
Sbjct 181 MVGRRGEFAVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAV 240
Query 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300
ACRELLL+EDVRARAA LAA+HPA+E+TVTGS DMLAKLAEGI DGMEA+LPVL D
Sbjct 241 ACRELLLTEDVRARAAALAAQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDD 300
Query 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360
HALLTDQL +GTPVLVCDPEKVRTRAADLI+TGREFLEASWSVAA+GT APVDVE L
Sbjct 301 HALLTDQLAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGT---DAPVDVEAL 357
Query 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420
GGSGF EL+QV+ AA+ +GHPWWTLSQLS+ESA EL+VRAAPSARGHQ+DID+IFAMLRA
Sbjct 358 GGSGFAELEQVQTAASSSGHPWWTLSQLSEESATELEVRAAPSARGHQKDIDDIFAMLRA 417
Query 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480
H++TGGYA +V PGTGTAHR+VERL+ESD PA ML+PG APK GVVGVL+GPLRDGVI+P
Sbjct 418 HVSTGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVP 477
Query 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540
GANLVV+TET+LTG+R +A EGKRLAAKRRN VDPLALTAGDLVVHDQHGIGRFVEMVER
Sbjct 478 GANLVVVTETNLTGNRATAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVER 537
Query 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600
TVGGARREYLVLEYASA+RGGG +DKLYVPMDSLDQLSRYVGGQAPALSRLGGSDW N
Sbjct 538 TVGGARREYLVLEYASARRGGG---SDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWTN 594
Query 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660
TKTKAR+AVREIAGELV+LYAKRQASPGHAF+PDTPWQAE+EDAFGFTETVDQLTAI EV
Sbjct 595 TKTKARKAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAITEV 654
Query 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720
K DMEK IPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF +R
Sbjct 655 KRDMEKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDR 714
Query 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780
M+GFPVT+KGLSRFTD AESR VI+G+ADGSVD+VIGTHRLLQTGVRWKDLGLVVVDEEQ
Sbjct 715 MAGFPVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQ 774
Query 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840
RFGVEHKEHIKSLR+HVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP
Sbjct 775 RFGVEHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 834
Query 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900
HDDKQ+AAALRRELLRDGQAFYVHNR SSID AAR+R+LVPEARVV AHGQMPEDLLE
Sbjct 835 HDDKQVAAALRRELLRDGQAFYVHNRASSIDDTAARIRKLVPEARVVAAHGQMPEDLLER 894
Query 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960
TVQ FW RE DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA
Sbjct 895 TVQGFWQREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 954
Query 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020
YFLYPPQ PLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLG+EQSGHVAGVGF
Sbjct 955 YFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGF 1014
Query 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080
DLY+RLVGEA+E AYRAAADG+ V T EEPKDVRIDLPVDAHLPPDYI SDRLRLE
Sbjct 1015 DLYLRLVGEAVE----AYRAAADGKMVTTPEEPKDVRIDLPVDAHLPPDYIGSDRLRLEA 1070
Query 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140
YRRLA A+SD VAAVVDEL DRYGALPEPA RL AVARLRLLCR SGITDV+A S+ATV
Sbjct 1071 YRRLATATSDSGVAAVVDELIDRYGALPEPALRLVAVARLRLLCRASGITDVSAPSSATV 1130
Query 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELVQMVADLIT 1200
RL+P+ LPDSAQVRLKRMYPG HYRATT+TVQVPIPR GG+GAPRIRDVELVQMVA+L+T
Sbjct 1131 RLAPMDLPDSAQVRLKRMYPGGHYRATTSTVQVPIPRDGGVGAPRIRDVELVQMVANLVT 1190
Query 1201 ALAGKPRQHIGITNPSPPGEDGRGRNTTIKERQ 1233
ALAGK +Q IG T+ S ED G + KERQ
Sbjct 1191 ALAGKLQQDIGRTSLS---EDDAGATASGKERQ 1220
>gi|254819273|ref|ZP_05224274.1| hypothetical protein MintA_05066 [Mycobacterium intracellulare
ATCC 13950]
Length=1200
Score = 2071 bits (5366), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1031/1208 (86%), Positives = 1105/1208 (92%), Gaps = 9/1208 (0%)
Query 19 LALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQGPLLVVTATGREADDLAAE 78
+AL+APTFQQL+ A P EL L+ PASARL VASALAR GPLLVVTATGREADDL AE
Sbjct 1 MALTAPTFQQLIDSAAASPAELHLVGPASARLFVASALARLGPLLVVTATGREADDLTAE 60
Query 79 LRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAHPDDAQLGPPLGVVVTSVR 138
LRGVFGDAVA+ PSWETLPHERLSPGVDTVG RL LRRLAHPDDA+LGPPL VVVT+ R
Sbjct 61 LRGVFGDAVAVFPSWETLPHERLSPGVDTVGARLTVLRRLAHPDDARLGPPLQVVVTAAR 120
Query 139 SLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVDMVGRRGEFAVRGGILDIF 198
SLLQPMTPQLG++EP+TL+VG E F+GV+ARLVELAYTRVDMVGRRGEFAVRGGILD+F
Sbjct 121 SLLQPMTPQLGLIEPVTLSVGAEVEFEGVIARLVELAYTRVDMVGRRGEFAVRGGILDVF 180
Query 199 APTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAFACRELLLSEDVRARAAQL 258
PTAEHPVR+EFWGDE++EMRMFSVADQRSIPEI++ TL+A CRELLL+E+VR RAA+L
Sbjct 181 PPTAEHPVRIEFWGDEVSEMRMFSVADQRSIPEIEVDTLIAVPCRELLLTEEVRQRAAEL 240
Query 259 AARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDGHALLTDQLPDGTPVLVCD 318
+ARHPA E +TGS +DMLAKLAEGIAVDGMEA+LPVL H LLTDQL GTP+L+CD
Sbjct 241 SARHPATEPAITGSVTDMLAKLAEGIAVDGMEALLPVLRPGEHVLLTDQLAQGTPILLCD 300
Query 319 PEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQLGGSGFVELDQVRAAAART 378
PEK+RTRAADLI+TG EFLEASWS AA+GT APVDV Q GGSGF ELD V+AAAA+
Sbjct 301 PEKIRTRAADLIKTGSEFLEASWSAAAMGT---DAPVDVAQFGGSGFAELDDVQAAAAKG 357
Query 379 GHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRAHIATGGYAALVAPGTGTA 438
GHPWWTLSQLSDESA+ELD+RAAPSARGHQ DID IFAMLRAH+ TGGYA +VAPG GTA
Sbjct 358 GHPWWTLSQLSDESAVELDIRAAPSARGHQHDIDGIFAMLRAHVTTGGYAVVVAPGAGTA 417
Query 439 HRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIPGANLVVITETDLTGSRVS 498
HRVVERL+E DTPA ML+ G APK GVVGVL+GPL DGVIIPGA LVVITETDLTGSRV+
Sbjct 418 HRVVERLAECDTPAAMLESGAAPKLGVVGVLKGPLHDGVIIPGATLVVITETDLTGSRVA 477
Query 499 AAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASAK 558
A EGKRLAAKRRN VDPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYAS+K
Sbjct 478 AVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASSK 537
Query 559 -RGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWANTKTKARRAVREIAGELV 617
RGG AKNTDKLYVPMDSLDQLSRYVGGQAPALS+LGGSDWANTKTKARRAVREIAGELV
Sbjct 538 NRGGAAKNTDKLYVPMDSLDQLSRYVGGQAPALSKLGGSDWANTKTKARRAVREIAGELV 597
Query 618 SLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEVKADMEKPIPMDRVICGD 677
SLYAKRQASPGHAF PDTPWQAE+EDAFG+TETVDQLTAI EVK DMEKPIPMDRVICGD
Sbjct 598 SLYAKRQASPGHAFGPDTPWQAEMEDAFGYTETVDQLTAITEVKGDMEKPIPMDRVICGD 657
Query 678 VGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGERMSGFPVTIKGLSRFTDA 737
VGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF +RM+GFPVT+KGLSRFTD
Sbjct 658 VGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDRMTGFPVTVKGLSRFTDP 717
Query 738 AESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKSLRTHV 797
AES+AVI+GLADGSVD+VIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKSLRTHV
Sbjct 718 AESKAVIEGLADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKSLRTHV 777
Query 798 DVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQIAAALRRELLRD 857
DVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQ+AAALRRELLRD
Sbjct 778 DVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQVAAALRRELLRD 837
Query 858 GQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLETTVQRFWNREHDILVCTT 917
GQ FYVHNRVSSID AA++RELVPEARVVVAHGQMPE+ LE TVQ FWNRE+DILVCTT
Sbjct 838 GQVFYVHNRVSSIDRTAAKIRELVPEARVVVAHGQMPEERLERTVQGFWNREYDILVCTT 897
Query 918 IVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPPQVPLTETAYDR 977
IVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP PLTETAYDR
Sbjct 898 IVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPPHAPLTETAYDR 957
Query 978 LATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGFDLYVRLVGEALETYRDA 1037
LATIAQNNELGAGMAVA+KDLEIRGAGNVLG+EQSGHVAGVGFDLYVRLVGEA+E A
Sbjct 958 LATIAQNNELGAGMAVAMKDLEIRGAGNVLGVEQSGHVAGVGFDLYVRLVGEAVE----A 1013
Query 1038 YRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEGYRRLAAASSDREVAAVV 1097
YRAAADG TV TAEEPKDVRIDLPVDAHLPPDYIASDRLRLE YRRLAAA+SD E+ AVV
Sbjct 1014 YRAAADGHTVTTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEAYRRLAAAASDGEIDAVV 1073
Query 1098 DELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATVRLSPLTLPDSAQVRLKR 1157
+EL DRYGALPEPA RL AVARLRLLCR +GIT+V+A SAATVRLSP+TLPDSAQVRLKR
Sbjct 1074 EELVDRYGALPEPALRLVAVARLRLLCRAAGITEVSAPSAATVRLSPMTLPDSAQVRLKR 1133
Query 1158 MYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELVQMVADLITALAGKPRQHIGITNPSP 1217
MYP A YRATT+TVQVPIPRAGG+GAPR+RDVELVQMVA+L+TAL GK + IGIT+ SP
Sbjct 1134 MYPAAGYRATTSTVQVPIPRAGGVGAPRLRDVELVQMVANLVTALQGKAQTDIGITS-SP 1192
Query 1218 PGEDGRGR 1225
GR
Sbjct 1193 AVMTSEGR 1200
>gi|221229524|ref|YP_002502940.1| putative transcription-repair coupling factor [Mycobacterium
leprae Br4923]
gi|219932631|emb|CAR70345.1| putative transcription-repair coupling factor [Mycobacterium
leprae Br4923]
Length=1224
Score = 2035 bits (5273), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1036/1229 (85%), Positives = 1100/1229 (90%), Gaps = 20/1229 (1%)
Query 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60
MTAPGPAC DTPIAGLVELAL+APTF QLM+RAG RP EL L PA ARL VASALAR G
Sbjct 1 MTAPGPACLDTPIAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLG 60
Query 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120
PLLVVTATGREA +L AELRGVFG AVA+ PSWETLPHERLSPGVDTVG RLM LRRLAH
Sbjct 61 PLLVVTATGREASNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAH 120
Query 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180
PDDA+LGPPL VVVT+VRSLLQPMT QLG++EP+TL+VGDE F+ V+ARLVELAYTRVD
Sbjct 121 PDDARLGPPLQVVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVD 180
Query 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240
MVGRRGEFAVRGGILDIF PTAEHPVRVEFWGDEITEMRMFSV DQRSIPEI + TLVA
Sbjct 181 MVGRRGEFAVRGGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAI 240
Query 241 ACRELLLSEDVRARAAQLAA----RHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVL 296
ACRELLLS+DVRARA +LAA R P E ++GS +D+LAKLAEGI VDGMEA+LPVL
Sbjct 241 ACRELLLSDDVRARAVELAAQAAARRPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVL 300
Query 297 WSDGHALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVD 356
D +ALLTDQ TPVL+CDPEKVR +AADLI+T R FLEASWSVAA+G A+N APVD
Sbjct 301 CPDDYALLTDQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIG-ADNAAPVD 359
Query 357 VEQLGGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFA 416
VEQL GSGFVEL V+AAA R+GHPWWTLSQLSDESA+ELD+RAAPS RGHQ ID IFA
Sbjct 360 VEQLYGSGFVELGDVQAAAIRSGHPWWTLSQLSDESALELDIRAAPSTRGHQHAIDGIFA 419
Query 417 MLRAHIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAP----KPGVVGVLQGP 472
MLRAH+ATGGYAA+V PGTGTAHRVVERL+ESD P ML+P AP +PG+VGVL+GP
Sbjct 420 MLRAHVATGGYAAIVTPGTGTAHRVVERLAESDIPGAMLEPAAAPGLGLRPGLVGVLKGP 479
Query 473 LRDGVIIPGANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIG 532
L DGV+IPGANLV+ITE DLTGSR + EGKRLAAKRR+ DPLALTAGDLVVHDQHGIG
Sbjct 480 LLDGVVIPGANLVIITEADLTGSRATPVEGKRLAAKRRSAADPLALTAGDLVVHDQHGIG 539
Query 533 RFVEMVERTVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSR 592
RFVEMVERTVGGARREYLVLEYAS K+ +K DKLYVPMDSLDQLSRYVGGQAPALSR
Sbjct 540 RFVEMVERTVGGARREYLVLEYASNKK---SKQADKLYVPMDSLDQLSRYVGGQAPALSR 596
Query 593 LGGSDWANTKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVD 652
LGGSDWANTKTKAR AVREIAGELVSLYAKRQASPGHAF PDTPWQAE+EDAFGFTETVD
Sbjct 597 LGGSDWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVD 656
Query 653 QLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQ 712
QLTAI EVK DMEK +PMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQ
Sbjct 657 QLTAITEVKGDMEKSVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQ 716
Query 713 HLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLG 772
HL+TF ERM+GFPVT+KGLSRFTDAAESRAVIDGLA+GSVDIVIGTHRLLQTGV WKDLG
Sbjct 717 HLRTFTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLG 776
Query 773 LVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERY 832
LVVVDEEQ FGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERY
Sbjct 777 LVVVDEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERY 836
Query 833 PVLTYVGPHDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQ 892
PVLTYVGPHDDKQ+AAALRRELLRDGQAFYVHNRVSSI AAARV LVPEARVVVAHGQ
Sbjct 837 PVLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQ 896
Query 893 MPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVG 952
MPEDLLETT++ FWNRE+DILVCTTIVETGLDI NANTL+VERADTFGLSQLHQLRGRVG
Sbjct 897 MPEDLLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVG 956
Query 953 RSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQS 1012
RS ERGYAYFLYPPQ PLTE AYDRL TIAQNNELGAGMAVALKDLEIRGAGNVLG+EQS
Sbjct 957 RSHERGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQS 1016
Query 1013 GHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIA 1072
GHVAGVGFDLYVRLVGEA+E AYRA ADG+T T EEPKDVRIDLPVDAHLPPDYIA
Sbjct 1017 GHVAGVGFDLYVRLVGEAVE----AYRAVADGKTAITPEEPKDVRIDLPVDAHLPPDYIA 1072
Query 1073 SDRLRLEGYRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDV 1132
SDRLRLEGYRRLAAASSD EVAAVVDEL DRYGALPEPA+RL AVA+LRLLCRGSGI +V
Sbjct 1073 SDRLRLEGYRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEV 1132
Query 1133 TAASAATVRLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGG----LGAPRIRD 1188
TA SA+T+RLSP+ L DSAQVRLKRMYPGA YRAT ATVQVPIPRAG LG P IRD
Sbjct 1133 TAPSASTMRLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRD 1192
Query 1189 VELVQMVADLITALAGKPRQHIGITNPSP 1217
VELVQ VADLITAL G PR+ IGIT P P
Sbjct 1193 VELVQAVADLITALQGLPRKVIGITGPEP 1221
>gi|15827046|ref|NP_301309.1| transcription-repair coupling factor [Mycobacterium leprae TN]
gi|13092593|emb|CAC29760.1| putative transcription-repair coupling factor [Mycobacterium
leprae]
Length=1224
Score = 2034 bits (5270), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1035/1229 (85%), Positives = 1099/1229 (90%), Gaps = 20/1229 (1%)
Query 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60
MTAPGPAC DTPIAGLVELAL+APTF QLM+RAG RP EL L PA ARL VASALAR G
Sbjct 1 MTAPGPACLDTPIAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLG 60
Query 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120
PLLVVTATGREA +L AELRGVFG AVA+ PSWETLPHERLSPGVDTVG RLM LRRLAH
Sbjct 61 PLLVVTATGREASNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAH 120
Query 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180
PDDA+LGPPL VVVT+VRSLLQPMT QLG++EP+TL+VGDE F+ V+ARLVELAYTRVD
Sbjct 121 PDDARLGPPLQVVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVD 180
Query 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240
MVGRRGEFAVRGGILDIF PTAEHPVRVEFWGDEITEMRMFSV DQRSIPEI + TLVA
Sbjct 181 MVGRRGEFAVRGGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAI 240
Query 241 ACRELLLSEDVRARAAQLAA----RHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVL 296
ACRELLLS+DVRARA +LAA R P E ++GS +D+LAKLAEGI VDGMEA+LPVL
Sbjct 241 ACRELLLSDDVRARAVELAAQAAARRPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVL 300
Query 297 WSDGHALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVD 356
D +ALLTDQ TPVL+CDPEKVR +AADLI+T R FLEASWSVAA+G A+N APVD
Sbjct 301 CPDDYALLTDQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIG-ADNAAPVD 359
Query 357 VEQLGGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFA 416
VEQL GSGFVEL V+AAA R+GHPWWTLSQLSDESA+ELD+RAAPS RGHQ ID IFA
Sbjct 360 VEQLYGSGFVELGDVQAAAIRSGHPWWTLSQLSDESALELDIRAAPSTRGHQHAIDGIFA 419
Query 417 MLRAHIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAP----KPGVVGVLQGP 472
MLRAH+ATGGYAA+V PGTGTAHRVVERL+ESD P ML+P AP +PG+VGVL+GP
Sbjct 420 MLRAHVATGGYAAIVTPGTGTAHRVVERLAESDIPGAMLEPAAAPGLGLRPGLVGVLKGP 479
Query 473 LRDGVIIPGANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIG 532
L DGV+IPGANLV+ITE DLTGSR + EGKRLAAKRR+ DPLALTAGDLVVHDQHGIG
Sbjct 480 LLDGVVIPGANLVIITEADLTGSRATPVEGKRLAAKRRSAADPLALTAGDLVVHDQHGIG 539
Query 533 RFVEMVERTVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSR 592
RFVEMVERTVGGARREYLVLEYAS K+ +K DKLYVPMDSLDQLSRYVGGQAPALSR
Sbjct 540 RFVEMVERTVGGARREYLVLEYASNKK---SKQADKLYVPMDSLDQLSRYVGGQAPALSR 596
Query 593 LGGSDWANTKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVD 652
LGGSDWANTKTKAR AVREIAGELVSLYAKRQASPGHAF PDTPWQAE+EDAFGFTETVD
Sbjct 597 LGGSDWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVD 656
Query 653 QLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQ 712
QLTAI EVK DMEK +PMDRVICGDVGYGK EIAVRAAFKAVQDGKQVAVLVPTTLLADQ
Sbjct 657 QLTAITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLADQ 716
Query 713 HLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLG 772
HL+TF ERM+GFPVT+KGLSRFTDAAESRAVIDGLA+GSVDIVIGTHRLLQTGV WKDLG
Sbjct 717 HLRTFTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLG 776
Query 773 LVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERY 832
LVVVDEEQ FGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERY
Sbjct 777 LVVVDEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERY 836
Query 833 PVLTYVGPHDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQ 892
PVLTYVGPHDDKQ+AAALRRELLRDGQAFYVHNRVSSI AAARV LVPEARVVVAHGQ
Sbjct 837 PVLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQ 896
Query 893 MPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVG 952
MPEDLLETT++ FWNRE+DILVCTTIVETGLDI NANTL+VERADTFGLSQLHQLRGRVG
Sbjct 897 MPEDLLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVG 956
Query 953 RSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQS 1012
RS ERGYAYFLYPPQ PLTE AYDRL TIAQNNELGAGMAVALKDLEIRGAGNVLG+EQS
Sbjct 957 RSHERGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQS 1016
Query 1013 GHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIA 1072
GHVAGVGFDLYVRLVGEA+E AYRA ADG+T T EEPKDVRIDLPVDAHLPPDYIA
Sbjct 1017 GHVAGVGFDLYVRLVGEAVE----AYRAVADGKTAITPEEPKDVRIDLPVDAHLPPDYIA 1072
Query 1073 SDRLRLEGYRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDV 1132
SDRLRLEGYRRLAAASSD EVAAVVDEL DRYGALPEPA+RL AVA+LRLLCRGSGI +V
Sbjct 1073 SDRLRLEGYRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEV 1132
Query 1133 TAASAATVRLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGG----LGAPRIRD 1188
TA SA+T+RLSP+ L DSAQVRLKRMYPGA YRAT ATVQVPIPRAG LG P IRD
Sbjct 1133 TAPSASTMRLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRD 1192
Query 1189 VELVQMVADLITALAGKPRQHIGITNPSP 1217
VELVQ VADLITAL G PR+ IGIT P P
Sbjct 1193 VELVQAVADLITALQGLPRKVIGITGPEP 1221
>gi|296169893|ref|ZP_06851505.1| transcription-repair coupling factor [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295895449|gb|EFG75151.1| transcription-repair coupling factor [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=1201
Score = 2031 bits (5263), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1031/1199 (86%), Positives = 1100/1199 (92%), Gaps = 13/1199 (1%)
Query 19 LALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQGPLLVVTATGREADDLAAE 78
+AL+APTFQQL++ A RP EL L+ PASARL VASALAR GPLLVVTATGREADDL AE
Sbjct 1 MALTAPTFQQLIESAADRPPELHLVGPASARLFVASALARLGPLLVVTATGREADDLTAE 60
Query 79 LRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAHPDDAQLGPPLGVVVTSVR 138
LRGVFGDAVA PSWETLPHERLSPGVDTVGTRL LRRLAHP+DA+LGPPL VVVT+VR
Sbjct 61 LRGVFGDAVAAFPSWETLPHERLSPGVDTVGTRLTVLRRLAHPEDARLGPPLRVVVTAVR 120
Query 139 SLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVDMVGRRGEFAVRGGILDIF 198
SLLQPMTPQLG++EP+T +VG E F+ VVARLVELAYTRVDMVGRRGEFAVRGGILD+F
Sbjct 121 SLLQPMTPQLGLVEPVTFSVGQEMAFEEVVARLVELAYTRVDMVGRRGEFAVRGGILDVF 180
Query 199 APTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAFACRELLLSEDVRARAAQL 258
PTAEHPVR+EFWGDE++EMRMF+VADQRSIPEI++ T++A ACRELLLS+DVR RAA L
Sbjct 181 PPTAEHPVRIEFWGDEVSEMRMFAVADQRSIPEIEVETVIAVACRELLLSDDVRERAAAL 240
Query 259 AARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDGHALLTDQLPDGTPVLVCD 318
AARH AE +TGS +DMLAKLAEGIAVDGMEA+LPVL H LLTDQL GTPVL+CD
Sbjct 241 AARHSGAEPAITGSVTDMLAKLAEGIAVDGMEALLPVLRPGEHVLLTDQLAQGTPVLLCD 300
Query 319 PEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQLGGSGFVELDQVRAAAART 378
PEKVRTRAADLI+TG EFLEASWSVAALGT APVDV Q GGSGF EL+ VRAAAA +
Sbjct 301 PEKVRTRAADLIKTGSEFLEASWSVAALGT---DAPVDVAQFGGSGFTELEDVRAAAATS 357
Query 379 GHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRAHIATGGYAALVAPGTGTA 438
GHPWWTLSQLSDESA+ELD+RAAPSARGHQ DIDEIFAMLRAH++TGGYAA+VAPG GTA
Sbjct 358 GHPWWTLSQLSDESAVELDIRAAPSARGHQHDIDEIFAMLRAHVSTGGYAAVVAPGIGTA 417
Query 439 HRVVERLSESDTPAGMLDPGQAP---KPGVVGVLQGPLRDGVIIPGANLVVITETDLTGS 495
HRVVERL++SDTPA ML+P A KPGVV VL+GPL DGV++PGANLVVITETDLTGS
Sbjct 418 HRVVERLADSDTPATMLEPDAADTTLKPGVVCVLKGPLHDGVVVPGANLVVITETDLTGS 477
Query 496 RVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYA 555
R +A EGKRLAAKRRN VDPLALTAGDLVVHDQHGIGRFVEM ERTVGGARREYLVLEYA
Sbjct 478 RATAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMTERTVGGARREYLVLEYA 537
Query 556 SAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWANTKTKARRAVREIAGE 615
S+KRGGG +DKLYVPMDSLDQLSRYVGGQAPALS+LGGSDWANTKTKARRAVREIAGE
Sbjct 538 SSKRGGG---SDKLYVPMDSLDQLSRYVGGQAPALSKLGGSDWANTKTKARRAVREIAGE 594
Query 616 LVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEVKADMEKPIPMDRVIC 675
LV+LYAKRQASPGHAF+PDTPWQAE+EDAFGFTETVDQLTAI EVKADMEKPIPMDRVIC
Sbjct 595 LVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAITEVKADMEKPIPMDRVIC 654
Query 676 GDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGERMSGFPVTIKGLSRFT 735
GDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF +RM+GFPVT+KGLSRFT
Sbjct 655 GDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDRMAGFPVTVKGLSRFT 714
Query 736 DAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKSLRT 795
D AESRAVI+GLADGSVD+VIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKSLRT
Sbjct 715 DNAESRAVIEGLADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKSLRT 774
Query 796 HVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQIAAALRRELL 855
HVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP DDKQ+AAALRRELL
Sbjct 775 HVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPQDDKQVAAALRRELL 834
Query 856 RDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLETTVQRFWNREHDILVC 915
RDGQ FYVHNRVSSID AAR+RELVPEARVVVAHGQMPE+ LE TVQ FWNRE+DILVC
Sbjct 835 RDGQVFYVHNRVSSIDRTAARIRELVPEARVVVAHGQMPEERLERTVQGFWNREYDILVC 894
Query 916 TTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPPQVPLTETAY 975
TTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP PLTETAY
Sbjct 895 TTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPPHAPLTETAY 954
Query 976 DRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGFDLYVRLVGEALETYR 1035
DRLATIAQNNELGAGMAVALKDLEIRGAGNVLG+EQSGHVAGVGFDLYVRLVGEA+E
Sbjct 955 DRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGFDLYVRLVGEAVE--- 1011
Query 1036 DAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEGYRRLAAASSDREVAA 1095
AYRAAADGQTV TAEEPKDVRIDLPVDAHLPPDYIASDRLRLEGYRRLAAA D V A
Sbjct 1012 -AYRAAADGQTVTTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEGYRRLAAAPDDAAVDA 1070
Query 1096 VVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATVRLSPLTLPDSAQVRL 1155
VV+EL DRYGALPEPA RL AVARLRLLCR +GIT+V+A SAATVRLSP+TLPDSAQVRL
Sbjct 1071 VVEELVDRYGALPEPALRLVAVARLRLLCRAAGITEVSAPSAATVRLSPMTLPDSAQVRL 1130
Query 1156 KRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELVQMVADLITALAGKPRQHIGITN 1214
KRMYP A YRATT+TVQVPIPR GG+GA RIRDVELVQMVA+L+TAL GKP+ IGIT
Sbjct 1131 KRMYPSASYRATTSTVQVPIPRDGGVGAARIRDVELVQMVANLVTALQGKPQTDIGITG 1189
>gi|126437189|ref|YP_001072880.1| transcription-repair coupling factor [Mycobacterium sp. JLS]
gi|126236989|gb|ABO00390.1| transcription-repair coupling factor [Mycobacterium sp. JLS]
Length=1211
Score = 1946 bits (5042), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 962/1211 (80%), Positives = 1067/1211 (89%), Gaps = 11/1211 (0%)
Query 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60
MT G TPIAGL+ELAL P L RA +PD+L ++ PASARLLV +ALA+ G
Sbjct 1 MTVSGLHHVQTPIAGLIELALRDPCLADLSARAADKPDDLAMVGPASARLLVTAALAQAG 60
Query 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120
PLLVVTATGREADDL AELRGV GD+ AL PSWETLPHERLSPGVDTVG R+M LRRLAH
Sbjct 61 PLLVVTATGREADDLTAELRGVIGDSAALFPSWETLPHERLSPGVDTVGARMMLLRRLAH 120
Query 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180
PDDA+LGPPL VVVT+ RSL+QPM P L +EP+TLTVG E FDGV+ RLV+LAYTR D
Sbjct 121 PDDARLGPPLRVVVTTARSLVQPMAPGLAEVEPVTLTVGAEMDFDGVIKRLVDLAYTRCD 180
Query 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240
MV +RGEFAVRGGILD+F PTAEHPVRVEFWGDEI+EMRMF+VADQRSIPEI++ T++A
Sbjct 181 MVAKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRMFAVADQRSIPEIEVDTVIAV 240
Query 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300
CRELL+S++VR+RAA LAA HP E++V GS DMLAKLAEGI VDGMEA+LP+L
Sbjct 241 PCRELLMSDEVRSRAAVLAAEHPTHENSVPGSVPDMLAKLAEGIPVDGMEALLPLLRPTD 300
Query 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360
A+L+D LPDG P+LVCDPEKVRTRA DLI+TGREFLEASWS AA+G A AP+D+E +
Sbjct 301 LAMLSDHLPDGAPILVCDPEKVRTRAGDLIKTGREFLEASWSTAAVGGA---APIDLEAM 357
Query 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420
G SGF+ ++VR A GHPWWTLSQLSDE AIELD+R+APSARG Q ++EIFAMLRA
Sbjct 358 GASGFLGFEEVRTGARAGGHPWWTLSQLSDEKAIELDIRSAPSARGQQSSVEEIFAMLRA 417
Query 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480
H+ATGGY A+V PG GTAHRVVE+L E+DTPA ML+PG+ PK GVVGVL+GPL DGV++P
Sbjct 418 HVATGGYGAVVTPGAGTAHRVVEQLGENDTPATMLEPGEEPKAGVVGVLKGPLHDGVVLP 477
Query 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540
GANLV++TE DLTGSRV+A EGKRLAAKRRN+VDPLALTAGDLVVHDQHGIGRFVEM ER
Sbjct 478 GANLVIVTEADLTGSRVTATEGKRLAAKRRNVVDPLALTAGDLVVHDQHGIGRFVEMTER 537
Query 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600
VGGARREYLVLEYAS+KRGGG +D+LYVPMDSLDQLSRYVGG+AP+LS+LGGSDWAN
Sbjct 538 VVGGARREYLVLEYASSKRGGG---SDRLYVPMDSLDQLSRYVGGEAPSLSKLGGSDWAN 594
Query 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660
TKTKARRAVREIA ELV+LYAKRQA+PGHAFSPDTPWQ E+EDAFGFTETVDQLTAIEEV
Sbjct 595 TKTKARRAVREIASELVALYAKRQAAPGHAFSPDTPWQNEMEDAFGFTETVDQLTAIEEV 654
Query 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720
KADMEKP+PMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF R
Sbjct 655 KADMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTAR 714
Query 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780
M+GFPVT+KGLSRFTD AESRA ++G+ DGSVDIVIGTHRLLQTGV WKDLGL++VDEEQ
Sbjct 715 MAGFPVTVKGLSRFTDPAESRAALEGMKDGSVDIVIGTHRLLQTGVVWKDLGLIIVDEEQ 774
Query 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840
RFGVEHKEHIKS+RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP
Sbjct 775 RFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 834
Query 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900
DDKQ+AAALRRELLRDGQAFY+HNRV +ID AA+++ LVPEARVVVAHGQMPE+LLE
Sbjct 835 QDDKQVAAALRRELLRDGQAFYIHNRVRTIDQAASKIAALVPEARVVVAHGQMPEELLER 894
Query 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960
TV+ FWNRE+DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA
Sbjct 895 TVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 954
Query 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020
YFLYPP+ PLTETAYDRLATIAQNNELGAGMAVA+KDLEIRGAGNVLG EQSGHVAGVGF
Sbjct 955 YFLYPPEQPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGF 1014
Query 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080
DLYVRLVGEA+E AYRAAADG+TV T +E KDVRIDLPVDA+LPPDYI SDRLRLE
Sbjct 1015 DLYVRLVGEAVE----AYRAAADGKTVATPQETKDVRIDLPVDANLPPDYIGSDRLRLEA 1070
Query 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140
YRRLAAA D V AV+DEL DRYG LPEPA+RL VARLRL+CR GITDV++ SA+TV
Sbjct 1071 YRRLAAAQDDAGVDAVIDELVDRYGPLPEPAQRLVGVARLRLVCREYGITDVSSVSASTV 1130
Query 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRA-GGLGAPRIRDVELVQMVADLI 1199
+LSP+ LPDSAQ+RLKRMYPGA YRATT TV VPIPRA +GAPRIRD ELV MVA L+
Sbjct 1131 KLSPMELPDSAQLRLKRMYPGATYRATTGTVSVPIPRATDSVGAPRIRDAELVAMVAGLV 1190
Query 1200 TALAGKPRQHI 1210
AL GKP+ I
Sbjct 1191 LALNGKPQAQI 1201
>gi|108801209|ref|YP_641406.1| transcription-repair coupling factor [Mycobacterium sp. MCS]
gi|119870360|ref|YP_940312.1| transcription-repair coupling factor [Mycobacterium sp. KMS]
gi|108771628|gb|ABG10350.1| transcription-repair coupling factor [Mycobacterium sp. MCS]
gi|119696449|gb|ABL93522.1| transcription-repair coupling factor [Mycobacterium sp. KMS]
Length=1211
Score = 1943 bits (5034), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 961/1211 (80%), Positives = 1066/1211 (89%), Gaps = 11/1211 (0%)
Query 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60
MT G TPIAGL+ELAL P L RA +PD+L ++ PASARLLV +ALA+ G
Sbjct 1 MTVSGLHHVQTPIAGLIELALRDPCLADLSARAADKPDDLAMVGPASARLLVTAALAQAG 60
Query 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120
PLLVVTATGREADDL AELRGV GD+ AL PSWETLPHERLSPGVDTVG R+M LRRLAH
Sbjct 61 PLLVVTATGREADDLTAELRGVIGDSAALFPSWETLPHERLSPGVDTVGARMMLLRRLAH 120
Query 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180
PDDA+LGPPL VVVT+ RSL+QPM P L +EP+TLTVG E FDGV+ RLV+LAYTR D
Sbjct 121 PDDARLGPPLRVVVTTARSLVQPMAPGLAEVEPVTLTVGAEMDFDGVIKRLVDLAYTRCD 180
Query 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240
MV +RGEFAVRGGILD+F PTAEHPVRVEFWGDEI+EMRMF+VADQRSIPEI++ T++A
Sbjct 181 MVAKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRMFAVADQRSIPEIEVDTVIAV 240
Query 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300
CRELL+S++VR+RAA LAA HP E++V GS DMLAKLAEGI VDGMEA+LP+L
Sbjct 241 PCRELLMSDEVRSRAAVLAAEHPTHENSVPGSVPDMLAKLAEGIPVDGMEALLPLLRPTD 300
Query 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360
A+L+D LPDG P+LVCDPEKVRTRA DLI+TGREFLEASWS AA+G A AP+D+E +
Sbjct 301 LAMLSDHLPDGAPILVCDPEKVRTRAGDLIKTGREFLEASWSTAAVGGA---APIDLEAM 357
Query 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420
G SGF+ ++VR A GHPWWTLSQLSDE AIELD+R+APSARG Q ++EIFAMLRA
Sbjct 358 GASGFLGFEEVRTGARAGGHPWWTLSQLSDEKAIELDIRSAPSARGQQSSVEEIFAMLRA 417
Query 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480
H+ATGGY A+V PG GTAHRVVE+L E+DTPA ML+PG+ PK GVVGVL+GPL DGV++P
Sbjct 418 HVATGGYGAVVTPGAGTAHRVVEQLGENDTPATMLEPGEEPKAGVVGVLKGPLHDGVVLP 477
Query 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540
GANLV++TE DLTGSRV+A EGKRLAAKRRN+VDPLALTAGDLVVHDQHGIGRFVEM ER
Sbjct 478 GANLVIVTEADLTGSRVTATEGKRLAAKRRNVVDPLALTAGDLVVHDQHGIGRFVEMTER 537
Query 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600
VGGARREYLVLEYAS+KRGGG +D+LYVPMDSLDQLSRYVGG+AP+LS+LGGSDWAN
Sbjct 538 VVGGARREYLVLEYASSKRGGG---SDRLYVPMDSLDQLSRYVGGEAPSLSKLGGSDWAN 594
Query 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660
TKTKARRAVREIA ELV+LYAKRQA+PGHAFSPDTPWQ E+EDAFGFTETVDQLTAIEEV
Sbjct 595 TKTKARRAVREIASELVALYAKRQAAPGHAFSPDTPWQNEMEDAFGFTETVDQLTAIEEV 654
Query 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720
KADMEKP+PMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF R
Sbjct 655 KADMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTAR 714
Query 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780
M+GFPVT+KGLSRFTD AESRA ++G+ DGSVDIVIGTHRLLQTGV WKDLGL++VDEEQ
Sbjct 715 MAGFPVTVKGLSRFTDPAESRAALEGMKDGSVDIVIGTHRLLQTGVVWKDLGLIIVDEEQ 774
Query 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840
RFGVEHKEHIKS+RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP
Sbjct 775 RFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 834
Query 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900
DDKQ+AAALRRELLRDGQAFY+HNRV +ID AA+++ LVPEARVVVAHGQMPE+LLE
Sbjct 835 QDDKQVAAALRRELLRDGQAFYIHNRVRTIDQAASKIAALVPEARVVVAHGQMPEELLER 894
Query 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960
TV+ FWNRE+DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA
Sbjct 895 TVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 954
Query 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020
YFLYPP+ PLTETAYDRLATIAQNNELGAGMAVA+KDLEIRGAGNVLG EQSGHVAGVGF
Sbjct 955 YFLYPPEQPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGF 1014
Query 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080
DLYVRLVGEA+E AYRAAADG+TV T +E KDVRIDLPVDA+LPPDYI SDRLRLE
Sbjct 1015 DLYVRLVGEAVE----AYRAAADGKTVATPQETKDVRIDLPVDANLPPDYIGSDRLRLEA 1070
Query 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140
YRRLAAA D V AV+DEL DRYG LPEPA+RL VARLRL+CR GITDV++ SA+TV
Sbjct 1071 YRRLAAAQDDAGVDAVIDELVDRYGPLPEPAQRLVGVARLRLVCREYGITDVSSVSASTV 1130
Query 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRA-GGLGAPRIRDVELVQMVADLI 1199
+LSP+ LPDSA +RLKRMYPGA YRATT TV VPIPRA +GAPRIRD ELV MVA L+
Sbjct 1131 KLSPMELPDSALLRLKRMYPGATYRATTGTVSVPIPRATDSVGAPRIRDAELVAMVAGLV 1190
Query 1200 TALAGKPRQHI 1210
AL GKP+ I
Sbjct 1191 LALNGKPQAQI 1201
>gi|120405727|ref|YP_955556.1| transcription-repair coupling factor [Mycobacterium vanbaalenii
PYR-1]
gi|119958545|gb|ABM15550.1| transcription-repair coupling factor [Mycobacterium vanbaalenii
PYR-1]
Length=1212
Score = 1912 bits (4954), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 962/1218 (79%), Positives = 1068/1218 (88%), Gaps = 15/1218 (1%)
Query 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60
MT G TPIAGLV+LAL P Q++ +RAG RP +L L+ PASAR+ VASALA+ G
Sbjct 1 MTVSGTLHVHTPIAGLVDLALRDPALQEIARRAGDRPADLNLVGPASARVFVASALAQPG 60
Query 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120
LLVVTATGREADDL AELRGVFGDAVAL PSWETLPHERLSPGVDTVG R+M LRRL H
Sbjct 61 LLLVVTATGREADDLTAELRGVFGDAVALFPSWETLPHERLSPGVDTVGARMMLLRRLTH 120
Query 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180
PDDA+LGPPL +VVT+ RSLLQPM P L ++P+TLTVG E+ FD VVARLV+LAY+RVD
Sbjct 121 PDDARLGPPLRIVVTTARSLLQPMAPDLAEVDPVTLTVGGEADFDAVVARLVDLAYSRVD 180
Query 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240
MVG+RGEFAVRGGILD+F PTAEHPVRVEFWGDE++EMRMFSVADQRSIPEI+I TL+A
Sbjct 181 MVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEVSEMRMFSVADQRSIPEIEIDTLIAV 240
Query 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300
CRELLL+ +VR RAA LA+ HP E++VTGS DMLAKLAEGI VDGMEA+LP+L
Sbjct 241 PCRELLLTAEVRDRAAALASEHPVLENSVTGSVPDMLAKLAEGIPVDGMEALLPLLRPSD 300
Query 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360
A L D LP+GTP+LVCDPEKVRTRAADLI+TGREFLEASWS AA+G P+D+E L
Sbjct 301 FATLPDHLPEGTPLLVCDPEKVRTRAADLIKTGREFLEASWSTAAVG---GDVPIDIEAL 357
Query 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIE---LDVRAAPSARGHQRDIDEIFAM 417
G SG+V R AA GHPWWTLSQL D A E LD+R APSARG Q ++DEIFAM
Sbjct 358 GVSGYVGYGDARDAARAGGHPWWTLSQL-DSGAGESTALDIRPAPSARGQQHNLDEIFAM 416
Query 418 LRAHIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGV 477
LRAH+ATGG+ +V PG+GTA RVVE+LSESD PA +L+PG P GVVGV++GPL DGV
Sbjct 417 LRAHVATGGFGVVVTPGSGTAMRVVEQLSESDIPATVLEPGAVPGEGVVGVIKGPLHDGV 476
Query 478 IIPGANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEM 537
+IPGANLVVITETDLTG+R +A EGK+LAAKRRN+VDPLALTAGDLVVHDQHGIGRFVEM
Sbjct 477 VIPGANLVVITETDLTGNRAAATEGKKLAAKRRNVVDPLALTAGDLVVHDQHGIGRFVEM 536
Query 538 VERTVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSD 597
ER +GGARREYLVLEYASAKRGGG +D+LYVPMDSLDQLSRYVGG+AP LSRLGGSD
Sbjct 537 TERVIGGARREYLVLEYASAKRGGG---SDRLYVPMDSLDQLSRYVGGEAPTLSRLGGSD 593
Query 598 WANTKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAI 657
WANTKTKAR+AVREIA ELV+LYAKRQAS GHAF+PDTPWQ E+EDAFGFTETVDQLTAI
Sbjct 594 WANTKTKARKAVREIAAELVALYAKRQASAGHAFAPDTPWQREMEDAFGFTETVDQLTAI 653
Query 658 EEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF 717
EVK+DMEKP+PMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF
Sbjct 654 TEVKSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF 713
Query 718 GERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVD 777
RM+GFPVT+KGLSRFTD AESRA I+G+ DGSVDIVIGTHRLLQTGV WKDLGLV+VD
Sbjct 714 TNRMTGFPVTVKGLSRFTDPAESRATIEGMKDGSVDIVIGTHRLLQTGVTWKDLGLVIVD 773
Query 778 EEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTY 837
EEQRFGVEHKEHIKS+RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTY
Sbjct 774 EEQRFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTY 833
Query 838 VGPHDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDL 897
VGPHDDKQ+AAALRRE+LRDGQAFY+HNRV +ID+AAA+VR+LVPEARVVVAHGQMPE+
Sbjct 834 VGPHDDKQVAAALRREMLRDGQAFYIHNRVRTIDSAAAKVRQLVPEARVVVAHGQMPEEQ 893
Query 898 LETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRER 957
LE TV+ FWNRE+DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRER
Sbjct 894 LEKTVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRER 953
Query 958 GYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAG 1017
GYAYFLYPP+VPLTETAYDRLATIAQNNELGAGMAVA+KDLEIRGAGNVLG EQSGHVAG
Sbjct 954 GYAYFLYPPEVPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAG 1013
Query 1018 VGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLR 1077
VGFDLYVRLVGEA+E AYRAAADG+TV EEPKDVRIDLPVDAHLPPDYI SDRLR
Sbjct 1014 VGFDLYVRLVGEAVE----AYRAAADGKTVAAPEEPKDVRIDLPVDAHLPPDYIGSDRLR 1069
Query 1078 LEGYRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASA 1137
LE YRRLAAA D V AV++EL DRYG LPEPA+RL AVARLRLL R G+T++ A SA
Sbjct 1070 LEAYRRLAAAPDDAAVDAVIEELVDRYGPLPEPAQRLVAVARLRLLARAHGVTEIGAPSA 1129
Query 1138 ATVRLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAG-GLGAPRIRDVELVQMVA 1196
T+R+SP+TLPDSAQ+RLKR+Y GA+YRATT+TVQVP+PRAG G+G+PRIRD+ELV VA
Sbjct 1130 TTLRISPMTLPDSAQLRLKRLYSGANYRATTSTVQVPVPRAGSGVGSPRIRDLELVAFVA 1189
Query 1197 DLITALAGKPRQHIGITN 1214
L+ A+ GKP + + IT
Sbjct 1190 GLLLAIDGKPGEEVDITK 1207
>gi|118471657|ref|YP_889663.1| transcription-repair coupling factor [Mycobacterium smegmatis
str. MC2 155]
gi|118172944|gb|ABK73840.1| transcription-repair coupling factor [Mycobacterium smegmatis
str. MC2 155]
Length=1215
Score = 1892 bits (4901), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 969/1224 (80%), Positives = 1081/1224 (89%), Gaps = 11/1224 (0%)
Query 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60
MTAPG TPIAGLVELALS P+ Q +++RA RP +L L+ PASAR+LVA+ALA+ G
Sbjct 1 MTAPGHTSVQTPIAGLVELALSDPSLQDVIRRAADRPADLALVGPASARVLVAAALAQNG 60
Query 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120
PLLVV ATGREAD+L AELRGVFGD+VAL PSWETLPHERLSPGV+TVG RLM LRRLA
Sbjct 61 PLLVVAATGREADELTAELRGVFGDSVALFPSWETLPHERLSPGVETVGARLMLLRRLAR 120
Query 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180
PDD LG PL VVVT+ RSLLQPM P L +EP+TL+VG E F+ VVARLV+L+YTRVD
Sbjct 121 PDDETLGAPLRVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVD 180
Query 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240
MVG+RGEFAVRGGILD+F PTAEHPVRVEFWGDEI+EMR F++ADQRSIPE+ + T+VA
Sbjct 181 MVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAV 240
Query 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300
CRELL+++DVR RAA LAA HP E+TV G+ DMLAKLAEGI VDGMEA+LP+L
Sbjct 241 PCRELLMTDDVRERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHPIE 300
Query 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360
LT LP+G PVLVCDPEKVRTRAADLI+TGREFLEASWS AA+G AP+D+E L
Sbjct 301 PTTLTRHLPEGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVG---GDAPIDLEAL 357
Query 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420
G SGFV ++ R AA GHPWWTLSQLSDESA+ELD+R+APSARG Q +++EIFAMLRA
Sbjct 358 GASGFVTFEEAREAAREGGHPWWTLSQLSDESAVELDIRSAPSARGSQHNLEEIFAMLRA 417
Query 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480
H+ATGGYAA+V PG GTAHRVVE+L E+DT A +L+PG APK GVVGVL+GPL GV++P
Sbjct 418 HVATGGYAAVVTPGIGTAHRVVEQLGEADTAATILEPGTAPKAGVVGVLKGPLCSGVVLP 477
Query 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540
GANLV+ITETDLTG+RV+A EG++LAAKRRN+VDPLALTAGDLVVHDQHGIG+FVEM ER
Sbjct 478 GANLVIITETDLTGNRVTANEGRKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMTER 537
Query 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600
VGGARREYLVLEYAS+KRGGG TDKLYVPMDSLDQLSRYVGG+AP+LSRLGGSDWAN
Sbjct 538 VVGGARREYLVLEYASSKRGGG---TDKLYVPMDSLDQLSRYVGGEAPSLSRLGGSDWAN 594
Query 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660
TKTKARRAVREIA ELV+LYAKRQ++PGHAF PDTPWQAE+EDAFGFTET+DQLTAI+EV
Sbjct 595 TKTKARRAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAIQEV 654
Query 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720
K+DMEKP+PMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF R
Sbjct 655 KSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNR 714
Query 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780
M+GFPVT+KGLSRFTD AESRAVI+GL DGSVD+VIGTHRLLQTGV WKDLGL++VDEEQ
Sbjct 715 MAGFPVTVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIVDEEQ 774
Query 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840
RFGVEHKEHIKS+RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP
Sbjct 775 RFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 834
Query 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900
HDDKQ+AAALRRELLRDGQAFY+HNRV +ID AAARVR+LVPEARVVVAHGQM E+ LE
Sbjct 835 HDDKQVAAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEETLEK 894
Query 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960
TV+ FWNRE+DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA
Sbjct 895 TVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 954
Query 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020
YFLYPP PLTETAYDRLATIAQNNELGAGMAVA+KDLEIRGAGNVLG EQSGHVAGVGF
Sbjct 955 YFLYPPNKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGF 1014
Query 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080
DLYVRLVGEA+E AYRAAADG+TV T +E KDVRIDLPVDAHLPP+YI SDRLRLE
Sbjct 1015 DLYVRLVGEAVE----AYRAAADGKTVATPQEQKDVRIDLPVDAHLPPEYIGSDRLRLEA 1070
Query 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140
YRRLAAA+ D VA+VVDEL DRYG LPEPA+RL AVARLRLLCR GIT++ A SA+TV
Sbjct 1071 YRRLAAAADDDAVASVVDELIDRYGPLPEPAQRLVAVARLRLLCREFGITEIGAVSASTV 1130
Query 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAG-GLGAPRIRDVELVQMVADLI 1199
RLSP+ LPDSAQ+RLKRMYPG HYRATT+TVQVP+PRAG G+GAPRIRD+ELVQ VA L+
Sbjct 1131 RLSPMVLPDSAQLRLKRMYPGGHYRATTSTVQVPLPRAGEGVGAPRIRDLELVQWVAGLV 1190
Query 1200 TALAGKPRQHIGITNPSPPGEDGR 1223
L GK + + ++ S P + +
Sbjct 1191 LVLNGKGQGDVDMSKFSNPAGEAK 1214
>gi|333989623|ref|YP_004522237.1| transcription-repair coupling factor Mfd (TrcF) [Mycobacterium
sp. JDM601]
gi|333485591|gb|AEF34983.1| transcription-repair coupling factor Mfd (TrcF) [Mycobacterium
sp. JDM601]
Length=1223
Score = 1884 bits (4880), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 985/1225 (81%), Positives = 1076/1225 (88%), Gaps = 14/1225 (1%)
Query 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60
MTAPG A TPIAGLVE ALSAPTF L++RA RP EL L+ PA+ R A+A+AR
Sbjct 1 MTAPGHASPATPIAGLVEAALSAPTFVDLIERADSRPAELNLVGPAATRPFAAAAVARNT 60
Query 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120
PLLVVTATG EADDLAAELRGV+GD VAL PSWETLPHERLSPGVDTVG R++ LRRLA
Sbjct 61 PLLVVTATGHEADDLAAELRGVYGDTVALFPSWETLPHERLSPGVDTVGARMLLLRRLAR 120
Query 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180
PDDA LGPPL VVVT+ RSLLQPMTP L +EP+TLTVG+E+PF+ V+ARLVELAYTRVD
Sbjct 121 PDDAHLGPPLRVVVTTARSLLQPMTPHLDAIEPVTLTVGEETPFEAVIARLVELAYTRVD 180
Query 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240
+VGRRGEFAVRGGILD+F PTAEHPVR+EFWGDEITEMR FSVADQRSIPEID T+VA
Sbjct 181 LVGRRGEFAVRGGILDVFPPTAEHPVRIEFWGDEITEMRPFSVADQRSIPEIDAGTVVAV 240
Query 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300
ACRELLL++DVRARAAQLA HP ++TVTG DMLAKLAEGI VDGMEA+ VL
Sbjct 241 ACRELLLTDDVRARAAQLAGDHPRTDNTVTGGVGDMLAKLAEGIPVDGMEALGSVLRPGP 300
Query 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360
ALLTDQL GTPVL+CDPEKVR RA DLI+TGREFLEASWSVAA+G AP+DVEQL
Sbjct 301 QALLTDQLAAGTPVLICDPEKVRARAGDLIKTGREFLEASWSVAAIG---GDAPIDVEQL 357
Query 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420
GGSGF +L +VR AA GHPWWTLSQL D AIEL+VR +PSARG QRDI+ IFAMLRA
Sbjct 358 GGSGFRDLAEVRKAALDAGHPWWTLSQLPDPEAIELEVRPSPSARGRQRDIEAIFAMLRA 417
Query 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480
H ATGG AA+V PG GTA R+VE+L+ES+T A +L+PG AP+PGVVGVLQGPL DGV+I
Sbjct 418 HTATGGAAAIVTPGVGTARRLVEQLAESETAATLLEPGAAPQPGVVGVLQGPLHDGVVIG 477
Query 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540
GANLV++TETDLTG+RV+ EGKRLAAKRRN VDPLALTAGDLVVHDQHGIG+FVEM ER
Sbjct 478 GANLVIVTETDLTGNRVAGPEGKRLAAKRRNAVDPLALTAGDLVVHDQHGIGKFVEMTER 537
Query 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600
TVGGARREYLVLEYAS KRG A TDKLYVPMDSLDQLSRYVGGQAP LS+LGGSDW+
Sbjct 538 TVGGARREYLVLEYASGKRG--ANGTDKLYVPMDSLDQLSRYVGGQAPGLSKLGGSDWSQ 595
Query 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660
TKTKAR+AVREIA ELV+LYAKRQA+PGHAF+PDTPWQAE+EDAFGFTETVDQLTAI EV
Sbjct 596 TKTKARKAVREIADELVALYAKRQAAPGHAFAPDTPWQAEMEDAFGFTETVDQLTAIGEV 655
Query 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720
KADMEKP+PMDRVICGDVGYGKTEIAVRAAFKAVQDG+QVAVLVPTTLLADQHLQTF R
Sbjct 656 KADMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGRQVAVLVPTTLLADQHLQTFTTR 715
Query 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780
M+GFPVT+KGLSRFTD ES+AVIDGLADGSVD+VIGTHRLLQTGV WK+LGLV+VDEEQ
Sbjct 716 MAGFPVTVKGLSRFTDPKESKAVIDGLADGSVDVVIGTHRLLQTGVAWKNLGLVIVDEEQ 775
Query 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840
RFGVEHKEHIK+LRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPE+RYPVLTYVGP
Sbjct 776 RFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEDRYPVLTYVGP 835
Query 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900
HDDKQ+AAALRRELLRDGQ FYVHNRVSSIDAAAARVR LVPEARVVVAHGQMPE+LLET
Sbjct 836 HDDKQVAAALRRELLRDGQIFYVHNRVSSIDAAAARVRALVPEARVVVAHGQMPEELLET 895
Query 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960
TVQ FWNRE+DILVCTTI+ETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA
Sbjct 896 TVQGFWNREYDILVCTTIIETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 955
Query 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020
YFLYP PLTETA+DRLATIAQNNELGAGMAVA+KDLEIRGAGNVLG+EQSGHVAGVGF
Sbjct 956 YFLYPRDTPLTETAHDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGVEQSGHVAGVGF 1015
Query 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080
DLYVRLVGEA+E YR AYR G V T EEPKDVRIDLPVDAHLPP+YI SDRLRLE
Sbjct 1016 DLYVRLVGEAVEAYRAAYR----GDLV-TTEEPKDVRIDLPVDAHLPPEYINSDRLRLEA 1070
Query 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140
YRRLAAA D ++AVV+ELTDRYG LPEPA RL AVARLRLLCR GIT+V+ ASA T+
Sbjct 1071 YRRLAAAPDDAAISAVVEELTDRYGPLPEPAGRLVAVARLRLLCRSVGITEVSVASATTL 1130
Query 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPR----AGGLGAPRIRDVELVQMVA 1196
+L+P+TLPDSAQ+RLKR++P A YRATTATVQVPIPR +GAPRIRDVELVQMVA
Sbjct 1131 KLAPMTLPDSAQLRLKRLHPSASYRATTATVQVPIPRAGGAGAPVGAPRIRDVELVQMVA 1190
Query 1197 DLITALAGKPRQHIGITNPSPPGED 1221
DLI+AL GKP + + +P D
Sbjct 1191 DLISALDGKPAGRLDMAGAAPATRD 1215
>gi|315442986|ref|YP_004075865.1| transcription-repair coupling factor Mfd [Mycobacterium sp. Spyr1]
gi|315261289|gb|ADT98030.1| transcription-repair coupling factor Mfd [Mycobacterium sp. Spyr1]
Length=1202
Score = 1866 bits (4834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 963/1211 (80%), Positives = 1056/1211 (88%), Gaps = 20/1211 (1%)
Query 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60
MTA G TPIAGLVELAL P+ Q++ +R RP +L + PASAR VASALA+ G
Sbjct 1 MTASGTLHVHTPIAGLVELALRDPSLQEIARRGADRPADLHFVGPASARPFVASALAQAG 60
Query 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120
LLVVTATGREADDL AELRGVFGD+VA+ PSWETLPHERLSPGVDTVG R+M LRRLA
Sbjct 61 LLLVVTATGREADDLTAELRGVFGDSVAMFPSWETLPHERLSPGVDTVGARMMLLRRLAF 120
Query 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180
PDDA+LG PL VVV + RSL+QPM P L ++P+TLTVG E+ FD VVARLV+LAYTRVD
Sbjct 121 PDDARLGEPLRVVVATARSLVQPMAPDLAQIDPVTLTVGAEADFDSVVARLVDLAYTRVD 180
Query 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240
MVG+RGEFAVRGGILD+F PTAEHPVRVEFWGDEI+EMRMFSVADQRSIPEI+I T++A
Sbjct 181 MVGKRGEFAVRGGILDLFPPTAEHPVRVEFWGDEISEMRMFSVADQRSIPEIEIDTVIAV 240
Query 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300
CRELLL+ DVR RAA L+A HP +E+ V GS DMLA+LAEGI VDGMEA+LP+L
Sbjct 241 PCRELLLTADVRERAAALSAEHPVSENNVPGSVPDMLARLAEGIPVDGMEALLPLLRPSD 300
Query 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360
A L D LP+GTP+LVCDPEKVRTRAADLI+TGREFLEASWS AA+G P+D+E L
Sbjct 301 FATLPDHLPEGTPLLVCDPEKVRTRAADLIKTGREFLEASWSTAAVG---GDVPIDLEAL 357
Query 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIE---LDVRAAPSARGHQ---RDIDEI 414
G SG+V ++ R AA GH WWTLSQL D A E LD+R APSAR Q DEI
Sbjct 358 GASGYVTYNEARDAARDGGHAWWTLSQL-DSGAGESTALDIRPAPSARLAQPIATGPDEI 416
Query 415 FAMLRAHIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLR 474
FAMLRAH+ATGG+ A+V PG GT RVVE+LSESDTPA +L+PG APK GVVGVL+GPL
Sbjct 417 FAMLRAHVATGGFGAVVTPGAGTCQRVVEQLSESDTPAMILEPGMAPKEGVVGVLKGPLH 476
Query 475 DGVIIPGANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRF 534
DGV+IPGANLVVITETDLTG+R +A EGK+LAAKRRN+VDPLALTAGDLVVHDQHGIGRF
Sbjct 477 DGVVIPGANLVVITETDLTGNRAAATEGKKLAAKRRNVVDPLALTAGDLVVHDQHGIGRF 536
Query 535 VEMVERTVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLG 594
VEM ER +GGARREYLVLEYASAKRGGG +D+LYVPMDSLDQLSRYVGG+AP LSRLG
Sbjct 537 VEMTERVIGGARREYLVLEYASAKRGGG---SDRLYVPMDSLDQLSRYVGGEAPTLSRLG 593
Query 595 GSDWANTKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQL 654
GSDWANTKTKARRAVREIA ELV+LYAKRQASPGHAFSPDTPWQ E+EDAFGFTETVDQL
Sbjct 594 GSDWANTKTKARRAVREIAAELVTLYAKRQASPGHAFSPDTPWQVEMEDAFGFTETVDQL 653
Query 655 TAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHL 714
TAI EVK+DMEKP+PMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHL
Sbjct 654 TAITEVKSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHL 713
Query 715 QTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLV 774
QTF RM+GFPVT+KGLSRFTD AESRA ++G+ DGSVDIVIGTHRLLQTGV WKDLGLV
Sbjct 714 QTFTNRMTGFPVTVKGLSRFTDPAESRATMEGMKDGSVDIVIGTHRLLQTGVTWKDLGLV 773
Query 775 VVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPV 834
+VDEEQRFGVEHKEHIKS+RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPV
Sbjct 774 IVDEEQRFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPV 833
Query 835 LTYVGPHDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMP 894
LTYVG HDDKQIAAALRRE+LRDGQAFY+HNRV +ID+AAA+VR+LVPEARVVVAHGQMP
Sbjct 834 LTYVGQHDDKQIAAALRREMLRDGQAFYIHNRVRTIDSAAAKVRQLVPEARVVVAHGQMP 893
Query 895 EDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRS 954
E+ LE TV+ FWNRE+DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRS
Sbjct 894 EEQLEKTVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRS 953
Query 955 RERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGH 1014
RERGYAYFLYPP+VPLTETAYDRLATIAQNNELGAGMAVA+KDLEIRGAGNVLG EQSGH
Sbjct 954 RERGYAYFLYPPEVPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGH 1013
Query 1015 VAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASD 1074
VAGVGFDLYVRLVGEA+E AYRAAADG+TV T EEPKDVRIDLPVDAHLPPDYI SD
Sbjct 1014 VAGVGFDLYVRLVGEAVE----AYRAAADGKTVATPEEPKDVRIDLPVDAHLPPDYIGSD 1069
Query 1075 RLRLEGYRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTA 1134
RLRLE YRRLAAA D V AV++EL DRYG LPEPA L AVARLRLL R +GIT+V A
Sbjct 1070 RLRLEAYRRLAAAPDDAAVDAVIEELVDRYGPLPEPAELLVAVARLRLLARAAGITEVGA 1129
Query 1135 --ASAATVRLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAG-GLGAPRIRDVEL 1191
ASA+T+R+SPLTLPDSAQ+RLKR+Y GA+YRATT+TVQVPIPRAG G+GAPRIRD EL
Sbjct 1130 VSASASTLRISPLTLPDSAQLRLKRLYSGANYRATTSTVQVPIPRAGQGVGAPRIRDREL 1189
Query 1192 VQMVADLITAL 1202
V VA LI L
Sbjct 1190 VDFVAGLIKVL 1200
>gi|145222538|ref|YP_001133216.1| transcription-repair coupling factor [Mycobacterium gilvum PYR-GCK]
gi|145215024|gb|ABP44428.1| transcription-repair coupling factor [Mycobacterium gilvum PYR-GCK]
Length=1198
Score = 1864 bits (4828), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 962/1208 (80%), Positives = 1056/1208 (88%), Gaps = 18/1208 (1%)
Query 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60
MTA G TPIAGLV LAL P+ Q++ +R RP +L + PASARL VASALA+ G
Sbjct 1 MTASGTLHVHTPIAGLVGLALRDPSLQEIARRGVDRPADLHFVGPASARLFVASALAQAG 60
Query 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120
LLVVTATGREADDL AELRGVFGDAVA+ PSWETLPHERLSPGVDTVG R+M LRRLA
Sbjct 61 LLLVVTATGREADDLTAELRGVFGDAVAMFPSWETLPHERLSPGVDTVGARMMLLRRLAF 120
Query 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180
PDDA+LG PL VVVT+ RSLLQPM P L ++P+TLTVG E+ FD VARLV+LAYTRVD
Sbjct 121 PDDARLGEPLRVVVTTARSLLQPMAPDLARIDPVTLTVGGEADFDETVARLVDLAYTRVD 180
Query 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240
MVG+RGEFAVRGGILD+F PTAEHPVRVEFWGDEI+EMRMFSVADQRSIPEI+I T++A
Sbjct 181 MVGKRGEFAVRGGILDLFPPTAEHPVRVEFWGDEISEMRMFSVADQRSIPEIEIDTVIAV 240
Query 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300
CRELLL+ DVR RAA LA HP +E+ V GS DMLA+LAEGI VDGMEA+LP+L
Sbjct 241 PCRELLLTADVRERAAALAEEHPVSENNVPGSVPDMLARLAEGIPVDGMEALLPLLRPSD 300
Query 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360
A L D LP+GTP+LVCDPEKVRTRAADLI+TGREFLEASWS AA+G P+D+E L
Sbjct 301 FATLPDHLPEGTPLLVCDPEKVRTRAADLIKTGREFLEASWSTAAVG---GDVPIDLEAL 357
Query 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIE---LDVRAAPSARGHQRDIDEIFAM 417
G SG+V ++ R AA GH WWTLSQL D A E LD+R APSARG Q +++EIFAM
Sbjct 358 GASGYVTYNEARDAARDGGHGWWTLSQL-DSGAGESTALDIRPAPSARG-QHNLEEIFAM 415
Query 418 LRAHIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGV 477
LRAH+ATGG +V PG GT RVVE+LSESDTPA +L+PG APK GVVGVL+GPL DGV
Sbjct 416 LRAHVATGGCGVVVTPGAGTCQRVVEQLSESDTPAMILEPGMAPKDGVVGVLKGPLHDGV 475
Query 478 IIPGANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEM 537
+IPGANLVVITETDLTG+R +A EGK+LAAKRRN+VDPLALTAGDLVVHDQHGIGRFVEM
Sbjct 476 VIPGANLVVITETDLTGNRAAATEGKKLAAKRRNVVDPLALTAGDLVVHDQHGIGRFVEM 535
Query 538 VERTVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSD 597
ER +GGARREYLVLEYASAKRGGGA D+LYVPMDSLDQLSRYVGG+AP LSRLGGSD
Sbjct 536 TERVIGGARREYLVLEYASAKRGGGA---DRLYVPMDSLDQLSRYVGGEAPTLSRLGGSD 592
Query 598 WANTKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAI 657
WANTKTKARRAVREIA ELV+LYAKRQASPGHAFSPDTPWQ E+EDAFGFTETVDQLTAI
Sbjct 593 WANTKTKARRAVREIAAELVTLYAKRQASPGHAFSPDTPWQVEMEDAFGFTETVDQLTAI 652
Query 658 EEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF 717
EVK+DMEKP+PMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF
Sbjct 653 TEVKSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF 712
Query 718 GERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVD 777
RM+GFPVT++GLSRFTD A SRA ++G+ DGSVDIVIGTHRL+QTGV WKDLGLV+VD
Sbjct 713 TARMTGFPVTVRGLSRFTDPASSRATLEGMKDGSVDIVIGTHRLIQTGVTWKDLGLVIVD 772
Query 778 EEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTY 837
EEQRFGVEHKEHIKS+RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTY
Sbjct 773 EEQRFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTY 832
Query 838 VGPHDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDL 897
VG HDDKQ+AAALRRE+LRDGQAFY+HNRV +ID+AAA++R+LVPEARVVVAHGQMPE+
Sbjct 833 VGQHDDKQVAAALRREMLRDGQAFYIHNRVRTIDSAAAKIRQLVPEARVVVAHGQMPEEQ 892
Query 898 LETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRER 957
LE TV+ FWNRE+DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRER
Sbjct 893 LEKTVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRER 952
Query 958 GYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAG 1017
GYAYFLYPP+VPLTETAYDRLATIAQNNELGAGMAVA+KDLEIRGAGNVLG EQSGHVAG
Sbjct 953 GYAYFLYPPEVPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAG 1012
Query 1018 VGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLR 1077
VGFDLYVRLVGEA+E AYRAAADG+TV T EEPKDVRIDLPVDAHLPPDYI SDRLR
Sbjct 1013 VGFDLYVRLVGEAVE----AYRAAADGKTVATPEEPKDVRIDLPVDAHLPPDYIGSDRLR 1068
Query 1078 LEGYRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTA--A 1135
LEGYRRLAAA D V AVV+EL DRYG LPEPA L AVARLRLL R +GIT+V A A
Sbjct 1069 LEGYRRLAAAPDDAAVDAVVEELVDRYGPLPEPAELLVAVARLRLLARAAGITEVGAVSA 1128
Query 1136 SAATVRLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAG-GLGAPRIRDVELVQM 1194
SA+T+R+SPLTLPDSAQ+RLKR+Y GA+YRATT+TVQVPIPRAG G+GAPRIRD ELV
Sbjct 1129 SASTLRISPLTLPDSAQLRLKRLYSGANYRATTSTVQVPIPRAGQGVGAPRIRDRELVDF 1188
Query 1195 VADLITAL 1202
VA LI L
Sbjct 1189 VAGLIKVL 1196
>gi|169628250|ref|YP_001701899.1| transcription-repair coupling factor [Mycobacterium abscessus
ATCC 19977]
gi|169240217|emb|CAM61245.1| Probable transcription-repair coupling factor (TrcF) [Mycobacterium
abscessus]
Length=1216
Score = 1740 bits (4507), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 900/1224 (74%), Positives = 1027/1224 (84%), Gaps = 25/1224 (2%)
Query 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALA--R 58
MTA P P+AG++ AL P F L + L L AP AR V + +A
Sbjct 1 MTATTP-----PLAGVIRTALRDPAFDVLAPAIAAKTG-LDLTAPTCARAFVVTGMADAS 54
Query 59 QGPLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRL 118
P+LVVTAT REA DL AELR V+GDAV LLPSWETLPHERLSPGVDTVG RL L RL
Sbjct 55 DAPVLVVTATTREAQDLTAELRDVYGDAVTLLPSWETLPHERLSPGVDTVGARLQVLHRL 114
Query 119 AHPDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTR 178
AHP+D+++G PL VV+T+VRSLLQPM+P+L +EP+ L VG E FDGV+ARLVELAYTR
Sbjct 115 AHPEDSRMGVPLRVVITTVRSLLQPMSPELFDLEPVELAVGAELEFDGVIARLVELAYTR 174
Query 179 VDMVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLV 238
VDMV RGEFAVRGGILD+F+PTA+HPVRVEFWGDE++EMR FSVADQRSIPE+ + +++
Sbjct 175 VDMVAGRGEFAVRGGILDVFSPTADHPVRVEFWGDEVSEMRYFSVADQRSIPELQVDSVL 234
Query 239 AFACRELLLSEDVRARAAQLAARHPAAEST----VTGSASDMLAKLAEGIAVDGMEAVLP 294
A CRELLL++ VRARAA+LA+ + S + +MLAKLA+GI VDGME++LP
Sbjct 235 AMPCRELLLTDQVRARAAELASAAGVSGSEEGHRLGAGVGEMLAKLADGICVDGMESLLP 294
Query 295 VLWSDGHALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAP 354
VL S +L D LPD PVLVCDPEKVRTRAADL RTGREFLEASWSVAA+G+ AP
Sbjct 295 VLHSGKLTMLVDHLPDHAPVLVCDPEKVRTRAADLERTGREFLEASWSVAAIGS---DAP 351
Query 355 VDVEQLGGSGFVELDQVRAAAARTGHPWWTLSQL--SDESAIELDVRAAPSARGHQRDID 412
+DVE L SGF ELD V+ AA G+PWW+LS L ++ AI L VR +PSARGH+
Sbjct 352 IDVEALADSGFRELDDVKHAAGEAGYPWWSLSPLGMDNDQAIGLAVRPSPSARGHKEGAA 411
Query 413 EIFAMLRAHIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGP 472
EIFAMLRAH+ TGG AA+VA G GT HR++E+L+E++TPA +L+PG P GVVGVL+G
Sbjct 412 EIFAMLRAHVMTGGRAAVVAAGAGTTHRIIEQLAETETPATLLEPGAEPAEGVVGVLRGH 471
Query 473 LRDGVIIPGANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIG 532
L DGV++ GAN+V++TETDLTGSRV+A +GKRL AKRRN VDPLAL+AGDLVVHDQHGIG
Sbjct 472 LTDGVVLTGANIVIVTETDLTGSRVAATDGKRLPAKRRNQVDPLALSAGDLVVHDQHGIG 531
Query 533 RFVEMVERTVGGARREYLVLEYASAKRGGGAK-NTDKLYVPMDSLDQLSRYVGGQAPALS 591
RFVEMVERTVGGARREYLVLEYAS KRG A +D+LYVPMDSLDQLSRYVGG++P LS
Sbjct 532 RFVEMVERTVGGARREYLVLEYASGKRGAAAGGQSDRLYVPMDSLDQLSRYVGGESPGLS 591
Query 592 RLGGSDWANTKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETV 651
RLGGSDW NTKTKAR+AVREIAGELV+LYA RQA+PGHAF+PDTPWQ E+EDAFGF ETV
Sbjct 592 RLGGSDWTNTKTKARKAVREIAGELVALYAARQAAPGHAFAPDTPWQREMEDAFGFVETV 651
Query 652 DQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAD 711
DQLTAI EVK+DMEKP+PMDRV+CGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAD
Sbjct 652 DQLTAITEVKSDMEKPVPMDRVVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAD 711
Query 712 QHLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDL 771
QHLQTF R +GFPV + GLSRFTD S+ V++G+ADGSVDIVIGTHRLLQTGVRWKDL
Sbjct 712 QHLQTFTNRTAGFPVKVAGLSRFTDPLTSKLVVEGMADGSVDIVIGTHRLLQTGVRWKDL 771
Query 772 GLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEER 831
GLV+VDEEQRFGVEHKEHIK+LRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEER
Sbjct 772 GLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEER 831
Query 832 YPVLTYVGPHDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHG 891
YPVLTYVGPHDDKQ+AAALRRELLRDGQAFYVHNRVS+ID AAAR+R+LVPEARVVVAHG
Sbjct 832 YPVLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSTIDKAAARIRDLVPEARVVVAHG 891
Query 892 QMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRV 951
QMPE++LE TVQ FWNRE+DILVCTTI+ETGLDISNANTLIVERAD FGLSQLHQLRGRV
Sbjct 892 QMPEEMLERTVQGFWNREYDILVCTTIIETGLDISNANTLIVERADIFGLSQLHQLRGRV 951
Query 952 GRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQ 1011
GRSRERGYAYFLY P+VPLTETAYDRL+TIAQNN+LGAGMAVA+KDLEIRGAGNVLG+EQ
Sbjct 952 GRSRERGYAYFLYSPEVPLTETAYDRLSTIAQNNDLGAGMAVAMKDLEIRGAGNVLGVEQ 1011
Query 1012 SGHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYI 1071
SGHVAGVGFDLYVRLVGEA+E AYRAAADG+TV TAEEPK+VRIDLPVDAHLP DYI
Sbjct 1012 SGHVAGVGFDLYVRLVGEAVE----AYRAAADGKTVLTAEEPKEVRIDLPVDAHLPTDYI 1067
Query 1072 ASDRLRLEGYRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITD 1131
SDRLRLE YRRLAAA+ ++ A V+EL DRYG LP P +RL AVA LRLLCR GITD
Sbjct 1068 GSDRLRLEAYRRLAAAADAAQINAAVEELADRYGPLPLPVQRLVAVASLRLLCREMGITD 1127
Query 1132 VTAASAATVRLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRA--GGLGAPRIRDV 1189
++ +R+ PL L DSAQ+RLKR++P A YRATT+ VQVPIPRA GG+G+ RIRD+
Sbjct 1128 LSVV-GTNIRIQPLPLLDSAQLRLKRLHPAAQYRATTSVVQVPIPRAGDGGVGSDRIRDL 1186
Query 1190 ELVQMVADLITALAGKPRQHIGIT 1213
ELV M+A+L+ AL+G+P + IT
Sbjct 1187 ELVHMIAELLVALSGRPAGSVDIT 1210
>gi|226365233|ref|YP_002783016.1| transcription-repair coupling factor [Rhodococcus opacus B4]
gi|226243723|dbj|BAH54071.1| transcription-repair coupling factor [Rhodococcus opacus B4]
Length=1215
Score = 1658 bits (4294), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 842/1214 (70%), Positives = 985/1214 (82%), Gaps = 34/1214 (2%)
Query 8 CSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQGPLLVVTA 67
SDTP+AGL ++AL Q+ + G R L ++APA AR VA+ALA + LL+VTA
Sbjct 11 SSDTPLAGLAKIALGDAVVAQVTEALGRR--HLDIVAPAPARPFVAAALAERTHLLLVTA 68
Query 68 TGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAHPDDAQLG 127
TGREADDL AEL+ + GDAVA PSWETLPHERLSP DTVG R+ LRRLA PDD G
Sbjct 69 TGREADDLTAELQEMIGDAVAQFPSWETLPHERLSPSADTVGRRVEVLRRLARPDDRSYG 128
Query 128 PPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVDMVGRRGE 187
PL VVVT+VRSL+QPM P LG +EP+TL VG E FDG++ RLVE+AYTRVDMVG+RGE
Sbjct 129 APLQVVVTTVRSLVQPMAPGLGEIEPVTLRVGVEHDFDGLIQRLVEMAYTRVDMVGKRGE 188
Query 188 FAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAFACRELLL 247
FAVRGGILD+F+PTA+HPVRVEFWGDE+TE+R FSVADQRS+ E+DI ++A CRELLL
Sbjct 189 FAVRGGILDLFSPTADHPVRVEFWGDEVTELRAFSVADQRSLAELDIDAVIAPPCRELLL 248
Query 248 SEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDGHALLTDQ 307
+EDVR RAAQLA + A + V +ML K++ GI V+GMEA+LPVL LLTD
Sbjct 249 TEDVRDRAAQLAVDNQADAALV-----EMLDKMSAGIPVEGMEALLPVLRPGQLQLLTDV 303
Query 308 LPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVE-------QL 360
LP+ VL+CDPEK+RTRA DL+RTG+EFLEASW+ A++G A AP+D L
Sbjct 304 LPESAHVLLCDPEKIRTRATDLVRTGQEFLEASWTAASIGGA---APLDTSVLKGDGIDL 360
Query 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESA--IELDVRAAPSARGHQRDIDEIFAML 418
G S + L QVR +A G PWWTLS L+ S +EL + AP RG + E+F L
Sbjct 361 GASAYRTLSQVRESAETAGLPWWTLSPLASGSGEELELAITPAPQVRGSDELLSELFVSL 420
Query 419 RAHIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVI 478
RAH++TGG A +V G GTAHRV+ERL E++ PA L PG P G VGVL+G L DG++
Sbjct 421 RAHVSTGGRAVIVVAGAGTAHRVLERLREAEVPAAELTPGSEPARGQVGVLRGSLHDGLV 480
Query 479 IPGAN----LVVITETDLTGSRVSA-AEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGR 533
PG + LVV+TE+DLTG+RV+A +G+RL AKRRN VDPLALTAGD+VVHDQHGIGR
Sbjct 481 FPGGDTTPGLVVVTESDLTGNRVAAVGDGRRLPAKRRNQVDPLALTAGDMVVHDQHGIGR 540
Query 534 FVEMVERTVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRL 593
FVEMVERT+GGARREYLV+EYA++KRG D+L+VPM+SLDQLSRYVGG+ PALS+L
Sbjct 541 FVEMVERTIGGARREYLVIEYAASKRG---HPGDRLFVPMESLDQLSRYVGGELPALSKL 597
Query 594 GGSDWANTKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQ 653
GGSDWANTK KAR+AVREIAGELV LYA RQA+PGHAF PDTPWQ E+EDAF FTET DQ
Sbjct 598 GGSDWANTKRKARKAVREIAGELVQLYAARQAAPGHAFGPDTPWQKEMEDAFAFTETHDQ 657
Query 654 LTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQH 713
LT I EVKADMEK +PMDRV+ GDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLA QH
Sbjct 658 LTVISEVKADMEKAVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQH 717
Query 714 LQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGL 773
LQTF ERM+ FPV ++GLSRFTDA ES+ ++ G+ADG +D+V+GTHRLLQT VRWKDLGL
Sbjct 718 LQTFTERMAAFPVKVRGLSRFTDAGESKEIVAGMADGEIDVVVGTHRLLQTAVRWKDLGL 777
Query 774 VVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYP 833
V+VDEEQRFGVEHKEHIK+LRTHVDVLTMSATPIPRTLEMS+AGIREMSTILTPPEER+P
Sbjct 778 VIVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHP 837
Query 834 VLTYVGPHDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQM 893
+LTYVG + DKQ+AAA+RRELLRDGQ FYVHNRVSSID AA R+RELVPEARVVVAHGQM
Sbjct 838 ILTYVGAYADKQVAAAIRRELLRDGQVFYVHNRVSSIDKAAQRIRELVPEARVVVAHGQM 897
Query 894 PEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGR 953
ED LE TVQ FW R++D+LVCTTI+ETGLDISNANTLIVERAD+ GLSQLHQLRGRVGR
Sbjct 898 NEDTLERTVQGFWERDYDVLVCTTIIETGLDISNANTLIVERADSLGLSQLHQLRGRVGR 957
Query 954 SRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSG 1013
SRERGYAYFLYPP+ PLTETAYDRLATI+QN++LGAGMAVA+KDLEIRGAGNVLG EQSG
Sbjct 958 SRERGYAYFLYPPEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSG 1017
Query 1014 HVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIAS 1073
HVAGVGFDLYVRLVGEA+E A+RAAADG+ + T + PK+VRIDLPVDAH+PPDY+ S
Sbjct 1018 HVAGVGFDLYVRLVGEAVE----AFRAAADGKPITTDDAPKEVRIDLPVDAHIPPDYVTS 1073
Query 1074 DRLRLEGYRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVT 1133
DRLRLEGYR+LAAA+ + AVVDEL DRYG LPE RRL +VA+LRLL R G+ ++
Sbjct 1074 DRLRLEGYRKLAAATELDGITAVVDELVDRYGPLPEEVRRLVSVAKLRLLAREYGLEEI- 1132
Query 1134 AASAATVRLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRA--GGLGAPRIRDVEL 1191
A +++SP+ LPDS Q+RLKR+YP A YRATT VQ+P+PRA GG+GA R+RDVEL
Sbjct 1133 AVVGTQLKISPMALPDSKQLRLKRIYPSAQYRATTGMVQLPLPRAGSGGIGAERVRDVEL 1192
Query 1192 VQMVADLITALAGK 1205
+Q +ADL+ AL GK
Sbjct 1193 LQYIADLVLALDGK 1206
>gi|111022724|ref|YP_705696.1| transcription repair coupling factor [Rhodococcus jostii RHA1]
gi|110822254|gb|ABG97538.1| transcription repair coupling factor [Rhodococcus jostii RHA1]
Length=1215
Score = 1654 bits (4284), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 840/1214 (70%), Positives = 982/1214 (81%), Gaps = 34/1214 (2%)
Query 8 CSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQGPLLVVTA 67
SDTP+AGL ++AL Q+ + G L ++AP AR VA+ALA + LL+VTA
Sbjct 11 SSDTPLAGLAKIALGDAVIAQVTEALGRH--HLDIVAPGPARPFVAAALAERTHLLLVTA 68
Query 68 TGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAHPDDAQLG 127
TGREADDL AELR + GDAVA PSWETLPHERLSP DTVG R+ LRRLA PDD G
Sbjct 69 TGREADDLTAELREMIGDAVAQFPSWETLPHERLSPSADTVGRRVEVLRRLARPDDRSYG 128
Query 128 PPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVDMVGRRGE 187
PL V+VT+VRSL+QPM P LG +EP+TL VG E FDG++ RLVE+AYTRVDMVG+RGE
Sbjct 129 APLQVIVTTVRSLVQPMAPGLGEIEPVTLRVGVEHDFDGLIQRLVEMAYTRVDMVGKRGE 188
Query 188 FAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAFACRELLL 247
FAVRGGILD+F+PTA+HPVRVEFWGDE+TE+R FSVADQRS+PE+DI ++A CRELLL
Sbjct 189 FAVRGGILDLFSPTADHPVRVEFWGDEVTELRAFSVADQRSLPELDIDAVIAPPCRELLL 248
Query 248 SEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDGHALLTDQ 307
+EDVR RAAQLA + A + V +ML K++ GI V+GMEA+LPVL LLTD
Sbjct 249 TEDVRDRAAQLAVDNQADAALV-----EMLDKMSAGIPVEGMEALLPVLRPGQLQLLTDV 303
Query 308 LPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVE-------QL 360
LP+ VL+CDPEK+RTRA DL+RTG+EFLEASW+ A++G A AP+D L
Sbjct 304 LPESAHVLLCDPEKIRTRATDLVRTGQEFLEASWTAASIGGA---APLDTSVLRGDGIDL 360
Query 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESA--IELDVRAAPSARGHQRDIDEIFAML 418
G S + L QVR +A G PWWTLS L+ + +EL V AP RG + E+F L
Sbjct 361 GASAYRSLSQVRESAEARGLPWWTLSPLASGNGEELELAVTPAPQVRGSDDLLSELFVSL 420
Query 419 RAHIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVI 478
RAH+ TGG A +V G GTAHRV+ERL E++ PA L PG P G VGVL+G L DG++
Sbjct 421 RAHVTTGGRAVIVVAGAGTAHRVLERLREAEVPAAELAPGTEPPRGQVGVLRGSLHDGLV 480
Query 479 IPG----ANLVVITETDLTGSRVSA-AEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGR 533
PG A LV++TE DLTG+RV+A +GKRL AKRRN VDPLALTAGD+VVHDQHGIGR
Sbjct 481 FPGDDSTAGLVIVTEADLTGNRVAAVGDGKRLPAKRRNQVDPLALTAGDMVVHDQHGIGR 540
Query 534 FVEMVERTVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRL 593
FVEMVERT+GGARREYLV+EYA++KRG D+L+VPM+SLDQLSRYVGG+ PALS+L
Sbjct 541 FVEMVERTIGGARREYLVIEYAASKRG---HPGDRLFVPMESLDQLSRYVGGELPALSKL 597
Query 594 GGSDWANTKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQ 653
GGSDWANTK KAR+AVREIAGELV LYA RQA+PGHAF PDTPWQ E+EDAF FTET DQ
Sbjct 598 GGSDWANTKRKARKAVREIAGELVQLYAARQAAPGHAFGPDTPWQKEMEDAFAFTETHDQ 657
Query 654 LTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQH 713
LT I EVKADMEK +PMDRV+ GDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLA QH
Sbjct 658 LTVISEVKADMEKAVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQH 717
Query 714 LQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGL 773
LQTF ERM+ FPVT++GLSRFTDA +S+ I G+ADG +D+V+GTHRLLQTG+RWKDLGL
Sbjct 718 LQTFTERMAAFPVTVRGLSRFTDAGDSKETIAGMADGEIDVVVGTHRLLQTGIRWKDLGL 777
Query 774 VVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYP 833
V+VDEEQRFGVEHKEHIK+LRTHVDVLTMSATPIPRTLEMS+AGIREMSTILTPPEER+P
Sbjct 778 VIVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHP 837
Query 834 VLTYVGPHDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQM 893
+LTYVG + DKQ+AAA+RRELLRDGQ FYVHNRVSSID +A R+RELVPEARVVVAHGQM
Sbjct 838 ILTYVGAYADKQVAAAIRRELLRDGQVFYVHNRVSSIDKSAQRIRELVPEARVVVAHGQM 897
Query 894 PEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGR 953
ED LE TVQ FW R++D+LVCTTI+ETGLDISNANTLIVERAD+ GLSQLHQLRGRVGR
Sbjct 898 NEDTLERTVQGFWERDYDVLVCTTIIETGLDISNANTLIVERADSLGLSQLHQLRGRVGR 957
Query 954 SRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSG 1013
SRERGYAYFLYPP+ PLTETAYDRLATI+QN++LGAGMAVA+KDLEIRGAGNVLG EQSG
Sbjct 958 SRERGYAYFLYPPEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSG 1017
Query 1014 HVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIAS 1073
HVAGVGFDLYVRLVGEA+E A+RAAADG+ + T + PK+VRIDLPVDAH+PPDY+ S
Sbjct 1018 HVAGVGFDLYVRLVGEAVE----AFRAAADGRPITTEDAPKEVRIDLPVDAHIPPDYVTS 1073
Query 1074 DRLRLEGYRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVT 1133
DRLRLEGYR+LAAA+ + AVVDEL DRYG LPE RRL +VA+LRLL R G+ ++
Sbjct 1074 DRLRLEGYRKLAAATELDGITAVVDELADRYGPLPEEVRRLVSVAKLRLLAREYGLEEI- 1132
Query 1134 AASAATVRLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRA--GGLGAPRIRDVEL 1191
A ++++P+ LPDS Q+RLKR+YP A YRATT VQ+P+PRA GG+GA R+RDVEL
Sbjct 1133 AVVGTQLKIAPMALPDSKQLRLKRIYPSAQYRATTGMVQLPLPRAGSGGIGAERVRDVEL 1192
Query 1192 VQMVADLITALAGK 1205
+Q +AD + AL GK
Sbjct 1193 LQYIADFVVALDGK 1206
>gi|325676609|ref|ZP_08156287.1| transcription-repair coupling factor [Rhodococcus equi ATCC 33707]
gi|325552787|gb|EGD22471.1| transcription-repair coupling factor [Rhodococcus equi ATCC 33707]
Length=1225
Score = 1640 bits (4248), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 837/1221 (69%), Positives = 989/1221 (81%), Gaps = 35/1221 (2%)
Query 2 TAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQGP 61
+ P + TP+AGL AL+ ++ Q + GR + ++AP +AR VA+ALA +
Sbjct 6 NSSAPVAAATPLAGLASTALADGAIGRV-QDSVGRTG-VDIVAPVAARPFVAAALADRTQ 63
Query 62 LLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAHP 121
LL+VTATGREADDL EL+ +FGD VA PSWETLPHERLSP DTVG RL LRRLA P
Sbjct 64 LLLVTATGREADDLTTELQEIFGDGVAQFPSWETLPHERLSPSADTVGRRLQVLRRLACP 123
Query 122 DDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVDM 181
D+A GPPL V+VT+VRSL+QPM P LG +EP+ L +G E F +V+RL ELAYTRVDM
Sbjct 124 DEADYGPPLRVIVTTVRSLVQPMAPGLGDIEPVVLRIGSEHDFGELVSRLAELAYTRVDM 183
Query 182 VGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAFA 241
VG+RGEFAVRGGILD+F PT++HPVRVEFWGDE+TE+R FSVADQRS+PE+++ T+VA
Sbjct 184 VGKRGEFAVRGGILDVFPPTSDHPVRVEFWGDEVTELRAFSVADQRSLPELELSTVVAPP 243
Query 242 CRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDGH 301
CRELLL+E VR RAAQLA +PA + V +ML KL+ GI V+GMEA+LP+L
Sbjct 244 CRELLLTEAVRDRAAQLATENPADAALV-----EMLDKLSAGIPVEGMEALLPLLQPGEL 298
Query 302 ALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQLG 361
LLT+ LP T VL+CDPEK+RTRA DL+RTG+EFLEASW+ A++G A AP+D LG
Sbjct 299 QLLTEVLPRETHVLLCDPEKIRTRATDLVRTGQEFLEASWTAASIGGA---APIDTSVLG 355
Query 362 G------SGFVELDQVRAAAARTGHPWWTLSQLSD--ESAIELDVRAAPSARGHQRDIDE 413
G S + L QVR A G PWWT+S L+ E + L V++AP RG + +
Sbjct 356 GGIDLGASAYRSLRQVRENAEAQGRPWWTISPLASGSEDELVLPVQSAPEVRGSEELLSM 415
Query 414 IFAMLRAHIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPL 473
+F LRAH+ TGG A +V G+GTAHRV+ERL E+D PAG L PG P G+V VL+G L
Sbjct 416 LFVNLRAHVTTGGRAVVVVAGSGTAHRVLERLKEADVPAGELAPGAEPARGLVQVLRGSL 475
Query 474 RDGVIIPGAN------LVVITETDLTGSRVSAA-EGKRLAAKRRNIVDPLALTAGDLVVH 526
+G+++PG + LV++TE+DLTG+RV+AA +GK++ AKRRN VDPLALTAGD+VVH
Sbjct 476 HEGIVLPGDDAAGVPGLVIVTESDLTGNRVAAAGDGKKMPAKRRNQVDPLALTAGDMVVH 535
Query 527 DQHGIGRFVEMVERTVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQ 586
DQHGIGRFVEMVERT+GGARREYLV+EYA++KRG D+L+VPM+SLDQLSRYVGG+
Sbjct 536 DQHGIGRFVEMVERTIGGARREYLVIEYAASKRG---HPGDRLFVPMESLDQLSRYVGGE 592
Query 587 APALSRLGGSDWANTKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFG 646
PALS+LGGSDW NTK KAR+AVREIAGELV LYA RQA+PGHAF PDTPWQ E+EDAF
Sbjct 593 MPALSKLGGSDWQNTKRKARKAVREIAGELVQLYAARQAAPGHAFGPDTPWQKEMEDAFA 652
Query 647 FTETVDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 706
FTET DQLT I+EVKADMEKP+PMDRV+ GDVGYGKTE+AVRAAFKAVQDGKQVAVLVPT
Sbjct 653 FTETHDQLTVIDEVKADMEKPVPMDRVVIGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPT 712
Query 707 TLLADQHLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGV 766
TLLA QHLQTF ERM+ FPV ++GLSRFTDAAES+ +I LADG +DIV+GTHRLLQTGV
Sbjct 713 TLLAQQHLQTFSERMANFPVKVRGLSRFTDAAESKEIIAQLADGEIDIVVGTHRLLQTGV 772
Query 767 RWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILT 826
RWKDLGLV+VDEEQRFGVEHKEHIK+LRTHVDVLTMSATPIPRTLEMS+AGIREMSTILT
Sbjct 773 RWKDLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILT 832
Query 827 PPEERYPVLTYVGPHDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARV 886
PPEER+P+LTYVG + DKQ+AAA+RRELLRDGQ FYVHNRVSSID AA R+RE+VPEARV
Sbjct 833 PPEERHPILTYVGAYADKQVAAAIRRELLRDGQVFYVHNRVSSIDKAAKRIREMVPEARV 892
Query 887 VVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQ 946
VVAHGQM E+ LE TVQ FW RE D+LVCTTI+ETGLDISNANTLIVERAD+ GLSQLHQ
Sbjct 893 VVAHGQMNEETLEKTVQGFWEREFDVLVCTTIIETGLDISNANTLIVERADSLGLSQLHQ 952
Query 947 LRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNV 1006
LRGRVGRSRERGYAYFLYPP+ PLTETAYDRLATI+QN++LGAGMAVA+KDLEIRGAGNV
Sbjct 953 LRGRVGRSRERGYAYFLYPPEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNV 1012
Query 1007 LGIEQSGHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHL 1066
LG EQSGHVAGVGFDLYVRLVGEA+E AYRA ADG+ V T E K+VRIDLPVDAH+
Sbjct 1013 LGAEQSGHVAGVGFDLYVRLVGEAVE----AYRAVADGRPVTTEPEVKEVRIDLPVDAHI 1068
Query 1067 PPDYIASDRLRLEGYRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRG 1126
PPDY+ SDRLRLEGYR+LAAA+ +AAVV+EL DRYG LPE RL +VA+LRLLCR
Sbjct 1069 PPDYVTSDRLRLEGYRKLAAAADTDAIAAVVEELVDRYGPLPEEVGRLVSVAKLRLLCRE 1128
Query 1127 SGITDVTAASAATVRLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRA--GGLGAP 1184
GI +V A + +++SP+ LPDS Q+RLKRMYP A YRATT VQ+P+PRA GG+GA
Sbjct 1129 YGIEEV-AVTGTQLKISPMQLPDSKQLRLKRMYPSAQYRATTGMVQMPLPRAGSGGVGAE 1187
Query 1185 RIRDVELVQMVADLITALAGK 1205
R+RDVEL+Q +A+ + A+ GK
Sbjct 1188 RVRDVELLQYIANFLLAMDGK 1208
>gi|312138702|ref|YP_004006038.1| transcription repair coupling factor mfd [Rhodococcus equi 103S]
gi|311888041|emb|CBH47353.1| transcription repair coupling factor Mfd [Rhodococcus equi 103S]
Length=1228
Score = 1639 bits (4243), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 837/1217 (69%), Positives = 988/1217 (82%), Gaps = 35/1217 (2%)
Query 6 PACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQGPLLVV 65
P + TP+AGL AL+ ++ Q + GR + ++AP +AR VA+ALA + LL+V
Sbjct 13 PVAAATPLAGLASTALADGAIGRV-QDSVGRTG-VDIVAPVAARPFVAAALADRTQLLLV 70
Query 66 TATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAHPDDAQ 125
TATGREADDL EL+ +FGD VA PSWETLPHERLSP DTVG RL LRRLA PD+A
Sbjct 71 TATGREADDLTTELQEIFGDGVAQFPSWETLPHERLSPSADTVGRRLQVLRRLACPDEAD 130
Query 126 LGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVDMVGRR 185
GPPL V+VT+VRSL+QPM P LG +EP+ L +G E F +V+RL ELAYTRVDMVG+R
Sbjct 131 YGPPLRVIVTTVRSLVQPMAPGLGDIEPVVLRIGSEHDFGELVSRLAELAYTRVDMVGKR 190
Query 186 GEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAFACREL 245
GEFAVRGGILD+F PT++HPVRVEFWGDE+TE+R FSVADQRS+PE+++ T+VA CREL
Sbjct 191 GEFAVRGGILDVFPPTSDHPVRVEFWGDEVTELRAFSVADQRSLPELELSTVVAPPCREL 250
Query 246 LLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDGHALLT 305
LL+E VR RAAQLA +PA + V +ML KL+ GI V+GMEA+LP+L LLT
Sbjct 251 LLTEAVRDRAAQLATENPADAALV-----EMLDKLSAGIPVEGMEALLPLLQPGELQLLT 305
Query 306 DQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQLGG--- 362
+ LP T VL+CDPEK+RTRA DL+RTG+EFLEASW+ A++G A AP+D LGG
Sbjct 306 EVLPRETHVLLCDPEKIRTRATDLVRTGQEFLEASWTAASIGGA---APIDTSVLGGGID 362
Query 363 ---SGFVELDQVRAAAARTGHPWWTLSQLSD--ESAIELDVRAAPSARGHQRDIDEIFAM 417
S + L QVR A G PWWT+S L+ E + L V++AP RG + + +F
Sbjct 363 LGASAYRSLRQVRENAEAQGRPWWTISPLASGSEDELVLPVQSAPEVRGSEELLSMLFVN 422
Query 418 LRAHIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGV 477
LRAH+ TGG A +V G+GTAHRV+ERL E+D PAG L PG P G+V VL+G L +G+
Sbjct 423 LRAHVTTGGRAVVVVAGSGTAHRVLERLKEADVPAGELAPGAEPARGLVQVLRGSLHEGI 482
Query 478 IIPGAN------LVVITETDLTGSRVSAA-EGKRLAAKRRNIVDPLALTAGDLVVHDQHG 530
++PG + LV++TE+DLTG+RV+AA +GK++ AKRRN VDPLALTAGD+VVHDQHG
Sbjct 483 VLPGDDAAGVPGLVIVTESDLTGNRVAAAGDGKKMPAKRRNQVDPLALTAGDMVVHDQHG 542
Query 531 IGRFVEMVERTVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPAL 590
IGRFVEMVERT+GGARREYLV+EYA++KRG D+L+VPM+SLDQLSRYVGG+ PAL
Sbjct 543 IGRFVEMVERTIGGARREYLVIEYAASKRG---HPGDRLFVPMESLDQLSRYVGGEMPAL 599
Query 591 SRLGGSDWANTKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTET 650
S+LGGSDW NTK KAR+AVREIAGELV LYA RQA+PGHAF PDTPWQ E+EDAF FTET
Sbjct 600 SKLGGSDWQNTKRKARKAVREIAGELVQLYAARQAAPGHAFGPDTPWQKEMEDAFAFTET 659
Query 651 VDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLA 710
DQLT I+EVKADMEKP+PMDRV+ GDVGYGKTE+AVRAAFKAVQDGKQVAVLVPTTLLA
Sbjct 660 HDQLTVIDEVKADMEKPVPMDRVVIGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLA 719
Query 711 DQHLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKD 770
QHLQTF ERM+ FPV ++GLSRFTDAAES+ +I LADG VDIV+GTHRLLQTGVRWKD
Sbjct 720 QQHLQTFSERMANFPVKVRGLSRFTDAAESKEIIAQLADGEVDIVVGTHRLLQTGVRWKD 779
Query 771 LGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEE 830
LGLV+VDEEQRFGVEHKEHIK+LRTHVDVLTMSATPIPRTLEMS+AGIREMSTILTPPEE
Sbjct 780 LGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEE 839
Query 831 RYPVLTYVGPHDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAH 890
R+P+LTYVG + DKQ+AAA+RRELLRDGQ FYVHNRVSSID AA R+RE+VPEARVVVAH
Sbjct 840 RHPILTYVGAYADKQVAAAIRRELLRDGQVFYVHNRVSSIDKAAKRIREMVPEARVVVAH 899
Query 891 GQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGR 950
GQM E+ LE TVQ FW RE D+LVCTTI+ETGLDISNANTLIVERAD+ GLSQLHQLRGR
Sbjct 900 GQMNEETLEKTVQGFWEREFDVLVCTTIIETGLDISNANTLIVERADSLGLSQLHQLRGR 959
Query 951 VGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIE 1010
VGRSRERGYAYFLYPP+ PLTETAYDRLATI+QN++LGAGMAVA+KDLEIRGAGNVLG E
Sbjct 960 VGRSRERGYAYFLYPPEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAE 1019
Query 1011 QSGHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDY 1070
QSGHVAGVGFDLYVRLVGEA+E AYRA ADG+ V T E K+VRIDLPVDAH+PPDY
Sbjct 1020 QSGHVAGVGFDLYVRLVGEAVE----AYRAVADGRPVTTEPEVKEVRIDLPVDAHIPPDY 1075
Query 1071 IASDRLRLEGYRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGIT 1130
+ SDRLRLEGYR+LAAA+ +AAVV+EL DRYG LPE RL +VA+LRLLCR GI
Sbjct 1076 VTSDRLRLEGYRKLAAAADTDAIAAVVEELVDRYGPLPEEVGRLVSVAKLRLLCREYGIE 1135
Query 1131 DVTAASAATVRLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRA--GGLGAPRIRD 1188
+V+ + +++SP+ LPDS Q+RLKRMYP A YRATT VQ+P+PRA GG+GA R+RD
Sbjct 1136 EVS-VTGTQLKISPMQLPDSKQLRLKRMYPSAQYRATTGMVQMPLPRAGSGGVGAERVRD 1194
Query 1189 VELVQMVADLITALAGK 1205
VEL+Q +A+ + A+ GK
Sbjct 1195 VELLQYIANFLLAMDGK 1211
>gi|229494982|ref|ZP_04388731.1| transcription-repair coupling factor [Rhodococcus erythropolis
SK121]
gi|229318076|gb|EEN83948.1| transcription-repair coupling factor [Rhodococcus erythropolis
SK121]
Length=1208
Score = 1628 bits (4215), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 821/1213 (68%), Positives = 982/1213 (81%), Gaps = 32/1213 (2%)
Query 7 ACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQGPLLVVT 66
+ + T +AGL E+AL+ F +++ G L ++AP AR +A+ALA + P+L+VT
Sbjct 5 SSAQTALAGLAEVALADAAFTPVIESIGSAA--LDIVAPKPARPFIAAALAARTPVLLVT 62
Query 67 ATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAHPDDAQL 126
ATGREADDL +EL + G VA PSWETLPHERLSP DTVG R+ LRRLA PDDA
Sbjct 63 ATGREADDLTSELTEMLGGGVAQFPSWETLPHERLSPSADTVGRRVEVLRRLARPDDASY 122
Query 127 GPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVDMVGRRG 186
G PL V+VT+VRSL+QPM P LG +EP+TL VG E FD V+ RLVE+AY+RVDMVG+RG
Sbjct 123 GSPLRVIVTTVRSLVQPMAPGLGEIEPITLRVGTEIDFDSVLVRLVEMAYSRVDMVGKRG 182
Query 187 EFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAFACRELL 246
EFAVRGGILD+F+PTA+HPVR+EFWGDE++E+R FSVADQRS+ ++D+ +++A CREL+
Sbjct 183 EFAVRGGILDLFSPTADHPVRIEFWGDEVSELRYFSVADQRSLADVDVDSVIAPPCRELI 242
Query 247 LSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDGHALLTD 306
L+ DVR RAA LAA + A S V +ML K++ GI V+GMEA+LPVL LL+D
Sbjct 243 LTADVRDRAAALAAENQADASLV-----EMLDKISAGIPVEGMEALLPVLKPGELQLLSD 297
Query 307 QLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVE-------Q 359
LP+G +L+CDPEKVRTRA DL+RTG+EFLEASW+ A++G A AP+D
Sbjct 298 VLPEGAHILLCDPEKVRTRATDLVRTGQEFLEASWTAASIGGA---APLDTSILNGGGVD 354
Query 360 LGGSGFVELDQVRAAAARTGHPWWTLSQLSDESA--IELDVRAAPSARGHQRDIDEIFAM 417
LG S + L VR +A G PWWT+S L+ + +EL V AAP RG + E+F
Sbjct 355 LGASAYRSLRHVRESAEAAGRPWWTVSPLASGNGEELELPVHAAPQVRGSDDLLAELFVS 414
Query 418 LRAHIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGV 477
LRAH++TGG AA+V G GTA RVVERL E++ PA MLD G P G V VL+G L DG+
Sbjct 415 LRAHVSTGGRAAIVVAGAGTASRVVERLGEAEVPAKMLDAGATPARGQVAVLRGSLHDGL 474
Query 478 IIPGAN----LVVITETDLTGSRVSA-AEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIG 532
++ G + +V++TE+DLTG+RV+A +GKRL AKRRN VDPLAL+AGD+VVHDQHGIG
Sbjct 475 VLAGDDSTPGMVIVTESDLTGNRVAAVGDGKRLPAKRRNQVDPLALSAGDMVVHDQHGIG 534
Query 533 RFVEMVERTVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSR 592
RFVEMVERT+GGARREYLV+EYA +KRG D+L+VPM+SLDQLSRYVGG+ PALS+
Sbjct 535 RFVEMVERTIGGARREYLVIEYAPSKRG---HPGDRLFVPMESLDQLSRYVGGELPALSK 591
Query 593 LGGSDWANTKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVD 652
LGGSDWANTK KAR+AVREIAGELV LYA RQA+PGHAF PDTPWQ ELEDAF FTET+D
Sbjct 592 LGGSDWANTKRKARKAVREIAGELVQLYAARQAAPGHAFGPDTPWQKELEDAFAFTETID 651
Query 653 QLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQ 712
QLT I EVKADMEKP+PMDRV+ GDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLA Q
Sbjct 652 QLTVISEVKADMEKPVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQ 711
Query 713 HLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLG 772
HLQTF ERM+ FPV ++GLSRFTDA +S+ +I G+A+G +DIV+GTHRLLQTG+RWKDLG
Sbjct 712 HLQTFTERMASFPVKVRGLSRFTDAKDSKEIIAGMAEGEIDIVVGTHRLLQTGIRWKDLG 771
Query 773 LVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERY 832
LV+VDEEQRFGVEHKEHIK+LRTHVDVLTMSATPIPRTLEMS+AGIREMSTILTPPEER+
Sbjct 772 LVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERH 831
Query 833 PVLTYVGPHDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQ 892
P+LTYVG + DKQ+AAA+RRELLRDGQ FYVHNRVSSID AA ++RELVPEARVVVAHGQ
Sbjct 832 PILTYVGAYADKQVAAAIRRELLRDGQVFYVHNRVSSIDKAAKKIRELVPEARVVVAHGQ 891
Query 893 MPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVG 952
M ED LE TVQ FW R+ D+LVCTTI+ETGLDISNANTLIVERAD+ GLSQLHQLRGRVG
Sbjct 892 MNEDTLEKTVQGFWERDFDVLVCTTIIETGLDISNANTLIVERADSLGLSQLHQLRGRVG 951
Query 953 RSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQS 1012
RSRERGYAYFLYP + PLTETAYDRLATI+QN++LGAGMAVA+KDLEIRGAGNVLG EQS
Sbjct 952 RSRERGYAYFLYPAEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQS 1011
Query 1013 GHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIA 1072
GHVAGVGFDLYVRLVGEA+E A+RAAADG+ + E K+VRIDLPVDAH+PPDY+
Sbjct 1012 GHVAGVGFDLYVRLVGEAVE----AFRAAADGKPITMDEGTKEVRIDLPVDAHIPPDYVT 1067
Query 1073 SDRLRLEGYRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDV 1132
SDRLRLEGYR+LAAA+ +AAVV+EL DRYG LPE RRL +VA+LRLLCR + +V
Sbjct 1068 SDRLRLEGYRKLAAATDSDGIAAVVEELVDRYGPLPEEVRRLISVAKLRLLCREYQLEEV 1127
Query 1133 TAASAATVRLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELV 1192
A + +++SP++LPDS Q+RLKR+YP A YRATT VQ+P+PR GG+G+ R+RDVEL+
Sbjct 1128 -AVTGTQLKISPMSLPDSKQIRLKRIYPSAQYRATTGLVQLPLPRTGGVGSDRLRDVELL 1186
Query 1193 QMVADLITALAGK 1205
Q +AD I A+ G+
Sbjct 1187 QYIADFILAIDGR 1199
>gi|226307788|ref|YP_002767748.1| transcription-repair coupling factor [Rhodococcus erythropolis
PR4]
gi|226186905|dbj|BAH35009.1| transcription-repair coupling factor [Rhodococcus erythropolis
PR4]
Length=1229
Score = 1626 bits (4210), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 821/1213 (68%), Positives = 982/1213 (81%), Gaps = 32/1213 (2%)
Query 7 ACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQGPLLVVT 66
+ + T +AGL E+AL+ F ++ G L ++AP AR +A+ALA + P+L+VT
Sbjct 26 SSAQTALAGLAEVALADAAFTPVIDSIGA--PALDIVAPKPARPFIAAALAARTPVLLVT 83
Query 67 ATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAHPDDAQL 126
ATGREADDL +EL + G VA PSWETLPHERLSP DTVG R+ LRRLA PDDA
Sbjct 84 ATGREADDLTSELTEMLGGGVAQFPSWETLPHERLSPSADTVGRRVEVLRRLARPDDASY 143
Query 127 GPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVDMVGRRG 186
G PL V+VT+VRSL+QPM P LG +EP+TL VG E FD V+ RLVE+AY+RVDMVG+RG
Sbjct 144 GSPLRVIVTTVRSLVQPMAPGLGEIEPITLRVGTEIDFDSVLVRLVEMAYSRVDMVGKRG 203
Query 187 EFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAFACRELL 246
EFAVRGGILD+F+PTA+HPVR+EFWGDE++E+R FSVADQRS+P++D+ +++A CREL+
Sbjct 204 EFAVRGGILDLFSPTADHPVRIEFWGDEVSELRYFSVADQRSLPDVDVDSVIAPPCRELI 263
Query 247 LSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDGHALLTD 306
L+ DVR RAA LAA + A S V +ML K++ GI V+GMEA+LPVL LL+D
Sbjct 264 LTADVRDRAAALAAENQADASLV-----EMLDKISAGIPVEGMEALLPVLKPGELQLLSD 318
Query 307 QLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVE-------Q 359
LP G +L+CDPEKVRTRA DL+RTG+EFLEASW+ A++G A AP+D
Sbjct 319 VLPVGAHILLCDPEKVRTRATDLVRTGQEFLEASWTAASIGGA---APLDTSILNGGGVD 375
Query 360 LGGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELD--VRAAPSARGHQRDIDEIFAM 417
LG S + L VR +A G PWWT+S L+ + EL+ V+AAP RG + E+F
Sbjct 376 LGASAYRSLRHVRESAEAAGRPWWTVSPLASGNGEELEIPVQAAPQVRGSDDLLAELFVS 435
Query 418 LRAHIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGV 477
LRAH++TGG AA+V G GTA RVVERL E++ PA ML+ G P G V VL+G L DG+
Sbjct 436 LRAHVSTGGRAAIVVAGAGTASRVVERLGEAEVPAKMLEGGATPARGQVAVLRGSLHDGL 495
Query 478 IIPGAN----LVVITETDLTGSRVSA-AEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIG 532
++ G + +V++TE+DLTG+RV+A +GKRL AKRRN VDPLAL+AGD+VVHDQHGIG
Sbjct 496 VLAGDDSTPGMVIVTESDLTGNRVAAVGDGKRLPAKRRNQVDPLALSAGDMVVHDQHGIG 555
Query 533 RFVEMVERTVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSR 592
RFVEMVERT+GGARREYLV+EYA +KRG D+L+VPM+SLDQLSRYVGG+ PALS+
Sbjct 556 RFVEMVERTIGGARREYLVIEYAPSKRG---HPGDRLFVPMESLDQLSRYVGGELPALSK 612
Query 593 LGGSDWANTKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVD 652
LGGSDWANTK KAR+AVREIAGELV LYA RQA+PGHAF PDTPWQ ELEDAF FTET+D
Sbjct 613 LGGSDWANTKRKARKAVREIAGELVQLYAARQAAPGHAFGPDTPWQKELEDAFAFTETID 672
Query 653 QLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQ 712
QLT I EVKADMEKP+PMDRV+ GDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLA Q
Sbjct 673 QLTVISEVKADMEKPVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQ 732
Query 713 HLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLG 772
HLQTF ERM+ FPV ++GLSRFTDA +S+ +I G+A+G +DIV+GTHRLLQTG+RWKDLG
Sbjct 733 HLQTFTERMASFPVKVRGLSRFTDAKDSKEIIAGMAEGEIDIVVGTHRLLQTGIRWKDLG 792
Query 773 LVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERY 832
LV+VDEEQRFGVEHKEHIK+LRTHVDVLTMSATPIPRTLEMS+AGIREMSTILTPPEER+
Sbjct 793 LVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERH 852
Query 833 PVLTYVGPHDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQ 892
P+LTYVG + DKQ+AAA+RRELLRDGQ FYVHNRVSSID AA ++RELVPEARVVVAHGQ
Sbjct 853 PILTYVGAYADKQVAAAIRRELLRDGQVFYVHNRVSSIDKAAKKIRELVPEARVVVAHGQ 912
Query 893 MPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVG 952
M ED LE TVQ FW R+ D+LVCTTI+ETGLDISNANTLIVERAD+ GLSQLHQLRGRVG
Sbjct 913 MNEDTLEKTVQGFWERDFDVLVCTTIIETGLDISNANTLIVERADSLGLSQLHQLRGRVG 972
Query 953 RSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQS 1012
RSRERGYAYFLYP + PLTETAYDRLATI+QN++LGAGMAVA+KDLEIRGAGNVLG EQS
Sbjct 973 RSRERGYAYFLYPAEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQS 1032
Query 1013 GHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIA 1072
GHVAGVGFDLYVRLVGEA+E A+RAAADG+ + E K+VRIDLPVDAH+PPDY+
Sbjct 1033 GHVAGVGFDLYVRLVGEAVE----AFRAAADGKPITMDEGTKEVRIDLPVDAHIPPDYVT 1088
Query 1073 SDRLRLEGYRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDV 1132
SDRLRLEGYR+LAAA+ +AAVV+EL DRYG LPE RRL +VA+LRLLCR + +V
Sbjct 1089 SDRLRLEGYRKLAAATDSDGIAAVVEELVDRYGPLPEEVRRLISVAKLRLLCREYQLEEV 1148
Query 1133 TAASAATVRLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELV 1192
A + +++SP++LPDS Q+RLKR+YP A YRATT VQ+P+PR GG+G+ R+RDVEL+
Sbjct 1149 -AVTGTQLKISPMSLPDSKQIRLKRIYPSAQYRATTGLVQLPLPRTGGVGSDRLRDVELL 1207
Query 1193 QMVADLITALAGK 1205
Q +AD I A+ G+
Sbjct 1208 QYIADFILAIDGR 1220
>gi|54026849|ref|YP_121091.1| putative transcription-repair coupling factor [Nocardia farcinica
IFM 10152]
gi|54018357|dbj|BAD59727.1| putative transcription-repair coupling factor [Nocardia farcinica
IFM 10152]
Length=1205
Score = 1617 bits (4188), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 834/1179 (71%), Positives = 968/1179 (83%), Gaps = 24/1179 (2%)
Query 42 LIAPASARLLVASALARQGPLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERL 101
++APA+AR VA+ +A + P++VVTATGREADDL EL + GD+VA PSWETLPHERL
Sbjct 35 MVAPAAARSFVAATVAGKRPVVVVTATGREADDLTVELTEILGDSVAQFPSWETLPHERL 94
Query 102 SPGVDTVGTRLMALRRLAHPDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDE 161
SP DTVG RL LRRLAHPDD PL VVVT+VRSL+QPM LG +EP+ L G E
Sbjct 95 SPSADTVGRRLAVLRRLAHPDDPVFPVPLRVVVTTVRSLMQPMAAGLGDIEPIVLREGAE 154
Query 162 SPFDGVVARLVELAYTRVDMVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMF 221
FD ++ RLVE AYTRVDMVG+RGEFAVRGGILD+F PTA+HPVRVEFWGDE+T++R F
Sbjct 155 LDFDDLLTRLVEFAYTRVDMVGKRGEFAVRGGILDLFPPTADHPVRVEFWGDEVTQVRAF 214
Query 222 SVADQRSIPEIDIHTLVAFACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLA 281
+VADQRS+PEI+I T+VA CRELLL+ VR RAAQ+AA + A + V +ML KLA
Sbjct 215 AVADQRSLPEIEIDTVVATPCRELLLTAPVRERAAQVAAANAADAALV-----EMLDKLA 269
Query 282 EGIAVDGMEAVLPVLWSDGHALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASW 341
EGI V+GMEA+LPVL LLT+QL GT VL+CDPEK+RTRAADL+RTG EFLEASW
Sbjct 270 EGIPVEGMEALLPVLQPGELTLLTEQLAAGTHVLLCDPEKIRTRAADLVRTGAEFLEASW 329
Query 342 SVAALGTAENQAPV--DVEQLGGSGFVELDQVRAAAARTGHPWWTLSQLS--DESAIELD 397
+ A+ G AP+ + L S + L Q+R A R G WWTLS L+ D + + L
Sbjct 330 TAASFGA---DAPLGGNGLDLAASSYRALPQIREDADRHGLAWWTLSPLASGDPAEVVLP 386
Query 398 VRAAPSARGHQRDIDEIFAMLRAHIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDP 457
+ AP+ARG + IFA LRAH+ TGG A +V G GTA RV+ERL++++ PA L
Sbjct 387 LHQAPTARGSDELVATIFASLRAHVTTGGRAVVVVAGHGTAQRVLERLADAEVPATALTA 446
Query 458 GQAPKPGVVGVLQGPLRDGVIIPGANLVVITETDLTGSRVSA-AEGKRLAAKRRNIVDPL 516
G P PGVVGVL G L DGV+ A LVV+ E+DLTG+RV+A EGKRL AKRRN VDPL
Sbjct 447 GAEPAPGVVGVLCGTLHDGVVFADAALVVVAESDLTGNRVTAPGEGKRLPAKRRNQVDPL 506
Query 517 ALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSL 576
AL+AGD+VVHDQHGIGRFVEM+ERTVGGARREYLV+EYA +KRG + D+L+VPM+SL
Sbjct 507 ALSAGDMVVHDQHGIGRFVEMIERTVGGARREYLVIEYAPSKRG---QPGDRLFVPMESL 563
Query 577 DQLSRYVGGQAPALSRLGGSDWANTKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTP 636
DQLSRYVGG+ P+LS+LGGSDWANTK KAR+AVREIAGELV LYA RQA+PGHAF PDTP
Sbjct 564 DQLSRYVGGEMPSLSKLGGSDWANTKRKARKAVREIAGELVQLYAARQAAPGHAFGPDTP 623
Query 637 WQAELEDAFGFTETVDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQD 696
WQ E+EDAF FTETVDQ+TAI EVKADMEKP+PMDRV+CGDVGYGKTEIAVRAAFKAVQD
Sbjct 624 WQKEMEDAFAFTETVDQMTAIAEVKADMEKPVPMDRVVCGDVGYGKTEIAVRAAFKAVQD 683
Query 697 GKQVAVLVPTTLLADQHLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVI 756
GKQV VLVPTTLLA QHLQTF ER++GFPVT+KGLSRFTD AESRAV++G+ADGSVDIV+
Sbjct 684 GKQVVVLVPTTLLAQQHLQTFTERVAGFPVTVKGLSRFTDPAESRAVLEGMADGSVDIVV 743
Query 757 GTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLA 816
GTHRLLQTGVRWKDLGLV+VDEEQRFGVEHKEHIK+LRTHVDVLTMSATPIPRTLEMSLA
Sbjct 744 GTHRLLQTGVRWKDLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSLA 803
Query 817 GIREMSTILTPPEERYPVLTYVGPHDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAAR 876
GIREMSTILTPPEER+PVLTYVG ++DKQ+ AA+RRELLRDGQ FYVHNRVSSID AA R
Sbjct 804 GIREMSTILTPPEERHPVLTYVGAYNDKQVTAAIRRELLRDGQVFYVHNRVSSIDKAAKR 863
Query 877 VRELVPEARVVVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERA 936
+R+LVPEARVVVAHGQM ED LE TVQ FW RE+D+LVCTTI+ETGLDISNANTLIVERA
Sbjct 864 IRDLVPEARVVVAHGQMNEDTLERTVQGFWQREYDVLVCTTIIETGLDISNANTLIVERA 923
Query 937 DTFGLSQLHQLRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALK 996
DT GLSQLHQLRGRVGRSRERGYAYFLYPP+ PLTETAYDRLATIAQN++LGAGMAVA+K
Sbjct 924 DTLGLSQLHQLRGRVGRSRERGYAYFLYPPEKPLTETAYDRLATIAQNSDLGAGMAVAMK 983
Query 997 DLEIRGAGNVLGIEQSGHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDV 1056
DLEIRGAGNVLG EQSGHVAGVGFDLYVRLVGEA+E AYRAAADG+ + T EE K+V
Sbjct 984 DLEIRGAGNVLGAEQSGHVAGVGFDLYVRLVGEAVE----AYRAAADGKPI-TTEEVKEV 1038
Query 1057 RIDLPVDAHLPPDYIASDRLRLEGYRRLAAASSDREVAAVVDELTDRYGALPEPARRLAA 1116
RIDLPVDAH+PPDY+ASDRLRLE YR+LAAA D +A+VV+EL DRYG LP RL +
Sbjct 1039 RIDLPVDAHIPPDYVASDRLRLEAYRKLAAAQDDSALASVVEELVDRYGPLPVEVGRLVS 1098
Query 1117 VARLRLLCRGSGITDVTAASAATVRLSP-LTLPDSAQVRLKRMYPGAHYRATTATVQVPI 1175
VA+LRLL R GIT++ A + T+++SP L LPDS Q+RLKR+YP A Y+A + VQ+P+
Sbjct 1099 VAKLRLLAREYGITEI-AVTGTTLKISPLLNLPDSKQLRLKRLYPSAGYKAASGVVQLPL 1157
Query 1176 PRA-GGLGAPRIRDVELVQMVADLITALAGKPRQHIGIT 1213
PR +GA R+RDV+L+Q VADL+ AL GK + + +T
Sbjct 1158 PRVEDSVGAERVRDVQLLQFVADLLLALDGKAQGAVDLT 1196
>gi|296140872|ref|YP_003648115.1| transcription-repair coupling factor [Tsukamurella paurometabola
DSM 20162]
gi|296029006|gb|ADG79776.1| transcription-repair coupling factor [Tsukamurella paurometabola
DSM 20162]
Length=1218
Score = 1588 bits (4111), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 817/1213 (68%), Positives = 962/1213 (80%), Gaps = 30/1213 (2%)
Query 2 TAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQGP 61
+AP PA S GL + P A GRPD LT+ A AR + SALA Q P
Sbjct 6 SAPTPALS-----GLTRAVAADPDVVAFAG-AAGRPD-LTVTAVDGARPFLLSALAGQAP 58
Query 62 LLVVTATGREADDLAAELRGVFG-DAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120
+LVVTATGREADDL +ELR G DAV PSWETLPHERLSPG DTVG RL LRRLA
Sbjct 59 VLVVTATGREADDLTSELRETLGADAVTQFPSWETLPHERLSPGADTVGRRLQVLRRLAW 118
Query 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180
PDDAQ G PL VV +VRSL+QPM P LG +TL G+E F+ ++ LVELAYTRVD
Sbjct 119 PDDAQYGAPLRAVVATVRSLVQPMAPGLGDAPSVTLREGEEFDFEELIETLVELAYTRVD 178
Query 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240
MVG+RGEFAVRGGILDIF T + PVRVEFWGDEIT++R FSVADQRS PE+ + T+ +
Sbjct 179 MVGKRGEFAVRGGILDIFPTTTDLPVRVEFWGDEITDLRAFSVADQRSQPEVQVGTVHVY 238
Query 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300
CRELLL+ DVR RAA L A H + + ++ML KLA+GI V+GMEA++P L
Sbjct 239 PCRELLLTADVRDRAATLKAEHES-----DAALAEMLEKLAQGIPVEGMEALIPALVPGE 293
Query 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360
LLTD LPDGT ++ DPEK+RTRAADL RTG+EFLEASW+ AALG++ P ++ L
Sbjct 294 LQLLTDVLPDGTHTVLLDPEKIRTRAADLARTGQEFLEASWTAAALGSSAPLDPSGID-L 352
Query 361 GGSGFVELDQVRAAAARTGHPWWTLSQL-----SDESAIELDVRAAPSARGHQRDIDEIF 415
G S + LD V A+ + GHPWWT+S L +D+ + + AP+ RG + + +++F
Sbjct 353 GASAYRGLDDVHASVSAQGHPWWTISPLAAGPDTDDDHLTVHAEHAPAPRGSEAEAEKLF 412
Query 416 AMLRAHIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRD 475
A LRAH A+GG +V G GT R++ERL +++ PA L+ G+ P+PG VGVL+G L+
Sbjct 413 ATLRAHAASGGSGVIVVAGRGTRARILERLRDAEVPASELEAGEGPRPGTVGVLRGSLQT 472
Query 476 GVIIPGANLVVITETDLTGSRVSA-AEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRF 534
G+ +P LV++ E DLTG+RV+ +G+RL AKRRN VDPLALTAGDLVVHD+HGIG+F
Sbjct 473 GLTVPSQQLVLLAEPDLTGNRVAGVGDGRRLPAKRRNQVDPLALTAGDLVVHDEHGIGKF 532
Query 535 VEMVERTVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLG 594
VEM+ERTV GARREYLV+EYA +KRG + DKL+VPM+SLDQLSRYVGG+ PALS++G
Sbjct 533 VEMIERTVAGARREYLVIEYAPSKRG---QPGDKLFVPMESLDQLSRYVGGEMPALSKMG 589
Query 595 GSDWANTKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQL 654
GSDW NTK KAR+AVREIAGELV LYA R A+PGHAF+PD+PWQ E+EDAF FTETVDQ+
Sbjct 590 GSDWQNTKRKARKAVREIAGELVQLYAARNAAPGHAFAPDSPWQREMEDAFPFTETVDQM 649
Query 655 TAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHL 714
T I +VK+DMEK +PMDRV+ GDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLA QHL
Sbjct 650 TVIGDVKSDMEKAVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHL 709
Query 715 QTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLV 774
+TF +RM GFPVT+KGLSRFTD E+ V++GLADGSVDIV+GTHRLLQTGVRWKDLGLV
Sbjct 710 KTFVDRMQGFPVTVKGLSRFTDRHETEQVLEGLADGSVDIVVGTHRLLQTGVRWKDLGLV 769
Query 775 VVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPV 834
VVDEEQRFGVEHKEHIK+LRT+VDVLTMSATPIPRTLEMS+AGIREMSTILTPPEER+PV
Sbjct 770 VVDEEQRFGVEHKEHIKALRTNVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPV 829
Query 835 LTYVGPHDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMP 894
LTYVGP+D+KQ+AAA+RRELLRDGQ FYVHNRVSSID AA ++R++VPEARVVVAHGQM
Sbjct 830 LTYVGPYDNKQVAAAIRRELLRDGQVFYVHNRVSSIDKAAKQIRDMVPEARVVVAHGQMG 889
Query 895 EDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRS 954
E+ LE+TVQ FWNRE D+LVCTTIVETGLDISNANTLIVERA+ GLSQLHQLRGRVGRS
Sbjct 890 EEALESTVQGFWNREFDVLVCTTIVETGLDISNANTLIVERAENLGLSQLHQLRGRVGRS 949
Query 955 RERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGH 1014
RERGYAYFLYP + PLTETAYDRL+TIAQNNELGAGMAVA+KDLEIRGAGNVLG EQSGH
Sbjct 950 RERGYAYFLYPSEKPLTETAYDRLSTIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGH 1009
Query 1015 VAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASD 1074
VAGVGFDLYVRLVGEA+E A+RAAADG + EE K+VRIDLPVDAH+PPDY+ SD
Sbjct 1010 VAGVGFDLYVRLVGEAVE----AFRAAADGTPITLPEEQKEVRIDLPVDAHIPPDYVTSD 1065
Query 1075 RLRLEGYRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTA 1134
RLRLE YR+LAAA D VA V+ ELTDRYG P RLAA+ARLR L R +G+T+V+
Sbjct 1066 RLRLEAYRKLAAAHDDSAVAEVLTELTDRYGPPPVEVERLAAIARLRSLARAAGVTEVS- 1124
Query 1135 ASAATVRLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPR--AGGLGAPRIRDVELV 1192
S TVR+SP+ L DS Q+RLKR+YPG YRATT TV PIPR GG+G+ R+RD+ L+
Sbjct 1125 VSGTTVRVSPMELRDSQQLRLKRLYPGGSYRATTRTVTFPIPRVEGGGVGSERVRDIALL 1184
Query 1193 QMVADLITALAGK 1205
Q+VAD + A+ GK
Sbjct 1185 QVVADFLAAMDGK 1197
>gi|289555197|ref|ZP_06444407.1| LOW QUALITY PROTEIN: transcription-repair coupling factor mfd
[Mycobacterium tuberculosis KZN 605]
gi|289439829|gb|EFD22322.1| LOW QUALITY PROTEIN: transcription-repair coupling factor mfd
[Mycobacterium tuberculosis KZN 605]
Length=824
Score = 1572 bits (4070), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 790/802 (99%), Positives = 790/802 (99%), Gaps = 7/802 (0%)
Query 433 PGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIPGANLVVITETDL 492
P GTA RV PAGMLDPGQAPKPGVVGVLQGPLRDGVIIPGANLVVITETDL
Sbjct 30 PRGGTAVRVRH-------PAGMLDPGQAPKPGVVGVLQGPLRDGVIIPGANLVVITETDL 82
Query 493 TGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVL 552
TGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVL
Sbjct 83 TGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVL 142
Query 553 EYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWANTKTKARRAVREI 612
EYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWANTKTKARRAVREI
Sbjct 143 EYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWANTKTKARRAVREI 202
Query 613 AGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEVKADMEKPIPMDR 672
AGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEVKADMEKPIPMDR
Sbjct 203 AGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEVKADMEKPIPMDR 262
Query 673 VICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGERMSGFPVTIKGLS 732
VICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGERMSGFPVTIKGLS
Sbjct 263 VICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGERMSGFPVTIKGLS 322
Query 733 RFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKS 792
RFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKS
Sbjct 323 RFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKS 382
Query 793 LRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQIAAALRR 852
LRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQIAAALRR
Sbjct 383 LRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQIAAALRR 442
Query 853 ELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLETTVQRFWNREHDI 912
ELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLETTVQRFWNREHDI
Sbjct 443 ELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLETTVQRFWNREHDI 502
Query 913 LVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPPQVPLTE 972
LVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPPQVPLTE
Sbjct 503 LVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPPQVPLTE 562
Query 973 TAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGFDLYVRLVGEALE 1032
TAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGFDLYVRLVGEALE
Sbjct 563 TAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGFDLYVRLVGEALE 622
Query 1033 TYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEGYRRLAAASSDRE 1092
TYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEGYRRLAAASSDRE
Sbjct 623 TYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEGYRRLAAASSDRE 682
Query 1093 VAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATVRLSPLTLPDSAQ 1152
VAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATVRLSPLTLPDSAQ
Sbjct 683 VAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATVRLSPLTLPDSAQ 742
Query 1153 VRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELVQMVADLITALAGKPRQHIGI 1212
VRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELVQMVADLITALAGKPRQHIGI
Sbjct 743 VRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELVQMVADLITALAGKPRQHIGI 802
Query 1213 TNPSPPGEDGRGRNTTIKERQP 1234
TNPSPPGEDGRGRNTTIKERQP
Sbjct 803 TNPSPPGEDGRGRNTTIKERQP 824
>gi|289757102|ref|ZP_06516480.1| LOW QUALITY PROTEIN: transcription-repair coupling factor Mfd
[Mycobacterium tuberculosis T85]
gi|289712666|gb|EFD76678.1| LOW QUALITY PROTEIN: transcription-repair coupling factor Mfd
[Mycobacterium tuberculosis T85]
Length=849
Score = 1541 bits (3989), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 772/784 (99%), Positives = 773/784 (99%), Gaps = 0/784 (0%)
Query 451 PAGMLDPGQAPKPGVVGVLQGPLRDGVIIPGANLVVITETDLTGSRVSAAEGKRLAAKRR 510
P G P + P GVLQGPLRDGVIIPGANLVVITETDLTGSRVSAAEGKRLAAKRR
Sbjct 66 PRGCSIPARRPSRESSGVLQGPLRDGVIIPGANLVVITETDLTGSRVSAAEGKRLAAKRR 125
Query 511 NIVDPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASAKRGGGAKNTDKLY 570
NIVDPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASAKRGGGAKNTDKLY
Sbjct 126 NIVDPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASAKRGGGAKNTDKLY 185
Query 571 VPMDSLDQLSRYVGGQAPALSRLGGSDWANTKTKARRAVREIAGELVSLYAKRQASPGHA 630
VPMDSLDQLSRYVGGQAPALSRLGGSDWANTKTKARRAVREIAGELVSLYAKRQASPGHA
Sbjct 186 VPMDSLDQLSRYVGGQAPALSRLGGSDWANTKTKARRAVREIAGELVSLYAKRQASPGHA 245
Query 631 FSPDTPWQAELEDAFGFTETVDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAA 690
FSPDTPWQAELEDAFGFTETVDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAA
Sbjct 246 FSPDTPWQAELEDAFGFTETVDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAA 305
Query 691 FKAVQDGKQVAVLVPTTLLADQHLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADG 750
FKAVQDGKQVAVLVPTTLLADQHLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADG
Sbjct 306 FKAVQDGKQVAVLVPTTLLADQHLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADG 365
Query 751 SVDIVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRT 810
SVDIVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRT
Sbjct 366 SVDIVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRT 425
Query 811 LEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQIAAALRRELLRDGQAFYVHNRVSSI 870
LEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQIAAALRRELLRDGQAFYVHNRVSSI
Sbjct 426 LEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQIAAALRRELLRDGQAFYVHNRVSSI 485
Query 871 DAAAARVRELVPEARVVVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANT 930
DAAAARVRELVPEARVVVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANT
Sbjct 486 DAAAARVRELVPEARVVVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANT 545
Query 931 LIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAG 990
LIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAG
Sbjct 546 LIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAG 605
Query 991 MAVALKDLEIRGAGNVLGIEQSGHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTA 1050
MAVALKDLEIRGAGNVLGIEQSGHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTA
Sbjct 606 MAVALKDLEIRGAGNVLGIEQSGHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTA 665
Query 1051 EEPKDVRIDLPVDAHLPPDYIASDRLRLEGYRRLAAASSDREVAAVVDELTDRYGALPEP 1110
EEPKDVRIDLPVDAHLPPDYIASDRLRLEGYRRLAAASSDREVAAVVDELTDRYGALPEP
Sbjct 666 EEPKDVRIDLPVDAHLPPDYIASDRLRLEGYRRLAAASSDREVAAVVDELTDRYGALPEP 725
Query 1111 ARRLAAVARLRLLCRGSGITDVTAASAATVRLSPLTLPDSAQVRLKRMYPGAHYRATTAT 1170
ARRLAAVARLRLLCRGSGITDVTAASAATVRLSPLTLPDSAQVRLKRMYPGAHYRATTAT
Sbjct 726 ARRLAAVARLRLLCRGSGITDVTAASAATVRLSPLTLPDSAQVRLKRMYPGAHYRATTAT 785
Query 1171 VQVPIPRAGGLGAPRIRDVELVQMVADLITALAGKPRQHIGITNPSPPGEDGRGRNTTIK 1230
VQVPIPRAGGLGAPRIRDVELVQMVADLITALAGKPRQHIGITNPSPPGEDGRGRNTTIK
Sbjct 786 VQVPIPRAGGLGAPRIRDVELVQMVADLITALAGKPRQHIGITNPSPPGEDGRGRNTTIK 845
Query 1231 ERQP 1234
ERQP
Sbjct 846 ERQP 849
>gi|343926966|ref|ZP_08766456.1| transcription-repair coupling factor [Gordonia alkanivorans NBRC
16433]
gi|343763125|dbj|GAA13382.1| transcription-repair coupling factor [Gordonia alkanivorans NBRC
16433]
Length=1191
Score = 1535 bits (3975), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 803/1206 (67%), Positives = 937/1206 (78%), Gaps = 35/1206 (2%)
Query 13 IAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALAR--QGPLLVVTATGR 70
++GL LA + +F+++ +R R L + AP +AR + S LA + PLLVV+A GR
Sbjct 7 LSGLAALACADKSFREVHERRAER--RLDITAPDAARPFLVSCLAAGAEAPLLVVSANGR 64
Query 71 EADDLAAELRGVFGDA--VALLPSWETLPHERLSPGVDTVGTRLMALRRLAHPDDAQLGP 128
EADDL AEL + DA VA PSWETLPHERLSP DTVG RL L RLA+P D
Sbjct 65 EADDLTAELAELLDDADSVAQFPSWETLPHERLSPSADTVGQRLAVLHRLANPGDN---- 120
Query 129 PLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVDMVGRRGEF 188
PL VVVT+VRSL+QPM P LG + +TL G E FDG++A+LVE+AY RVDMVGRRGEF
Sbjct 121 PLRVVVTTVRSLVQPMAPGLGEVATVTLREGIEVDFDGLLAQLVEMAYERVDMVGRRGEF 180
Query 189 AVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAFACRELLLS 248
AVRGGILD+F TA+HPVRVEFWGDEITE+R FSVADQRS PE+D + RELLLS
Sbjct 181 AVRGGILDVFPTTADHPVRVEFWGDEITEIRAFSVADQRSQPEVDASEVRIHPGRELLLS 240
Query 249 EDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDGHALLTDQL 308
E VR RA+ LAA++P + ++ML KLAEGI V+GMEA++P L LLT+ +
Sbjct 241 EKVRTRASDLAAKNPD-----DTALTEMLGKLAEGIPVEGMEALIPALVDGEMQLLTEVV 295
Query 309 PDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQ-----LGGS 363
PDGT VL+ DPEKVRTRAADL +TG EFLEASW+ AA+G AP+D L S
Sbjct 296 PDGTRVLILDPEKVRTRAADLSKTGAEFLEASWTAAAMGA---NAPIDPRSGTGIDLQAS 352
Query 364 GFVELDQVRAAAARTGHPWWTLSQLSDESA--IELDVRAAPSARGHQRDIDEIFAMLRAH 421
+ L VR A + PWWTLS LS S +ELD+ P+ RG +R+I FA LRAH
Sbjct 353 AYRSLGDVREATLQAKRPWWTLSPLSTGSGNELELDLTPGPAPRGDEREIAATFAQLRAH 412
Query 422 IATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIPG 481
++ G AA+V G GTA RV ERLSE++ P + +PG P+PG V V LR G++
Sbjct 413 VSDGKTAAIVVTGKGTAQRVGERLSEAEVPYVIAEPGHRPEPGEVTVFGATLRAGIVCAD 472
Query 482 ANLVVITETDLTGSRVSAA-EGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540
A LVV+TE DLTG+RV+ +G++L AKRRN VDPLAL AGDLVVHDQHGIG+FVEM+ER
Sbjct 473 AGLVVVTEADLTGTRVANVRDGRKLPAKRRNQVDPLALAAGDLVVHDQHGIGKFVEMIER 532
Query 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600
TV GARREYLVLEYAS+KRG A D+LYVPMD+LDQLSRYVGG+ P+LS+LGGSDW N
Sbjct 533 TVSGARREYLVLEYASSKRGQPA---DRLYVPMDALDQLSRYVGGEQPSLSKLGGSDWQN 589
Query 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660
TK KAR+AVREIAGELV LYA R A+PGHAF PDTPWQ E+EDAF FTETVDQLT I EV
Sbjct 590 TKRKARKAVREIAGELVQLYAARHAAPGHAFGPDTPWQQEMEDAFDFTETVDQLTVIAEV 649
Query 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720
K+DME+P+PMDRVI GDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTT+LA QHLQTF ER
Sbjct 650 KSDMERPVPMDRVIVGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTILAQQHLQTFTER 709
Query 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780
MSGFPV ++GLSRFTDA ESR + + +A G VDIVIGTHRLLQTG+ WKDLGLV+VDEEQ
Sbjct 710 MSGFPVRVRGLSRFTDAKESREITEAMAKGEVDIVIGTHRLLQTGITWKDLGLVIVDEEQ 769
Query 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840
RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMS+AGIREMSTILTPPEER+PVLTYVG
Sbjct 770 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPVLTYVGA 829
Query 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900
+ KQ+AAA+RRELLRDGQ FYVHNRVS+ID A + ++PEARVVVAHGQM ED LE
Sbjct 830 YAPKQVAAAIRRELLRDGQVFYVHNRVSTIDKTAKDIAAMIPEARVVVAHGQMGEDQLER 889
Query 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960
TV FWNRE+D+LVCTTI+ETGLDISNANTLIV+RA+ GLSQLHQLRGRVGRSRERGYA
Sbjct 890 TVSGFWNREYDVLVCTTIIETGLDISNANTLIVDRAENLGLSQLHQLRGRVGRSRERGYA 949
Query 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020
Y LY P PLTETAYDRLATIAQNNELGAGMAVALKDLE+RGAGNVLG EQSGHVAGVGF
Sbjct 950 YLLYSPDRPLTETAYDRLATIAQNNELGAGMAVALKDLELRGAGNVLGAEQSGHVAGVGF 1009
Query 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080
DLYVRLVGEA+E AYRAAADG+ V T +E +VRIDLPVDAH+P +Y+ SDRLRLE
Sbjct 1010 DLYVRLVGEAVE----AYRAAADGKPVET-QETGEVRIDLPVDAHIPVEYVDSDRLRLEA 1064
Query 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140
YR+LA+A+ D EV AV+ EL DRYG P RLA++ARLRL CR GIT++ A V
Sbjct 1065 YRKLASATDDAEVDAVLVELNDRYGPPPVETTRLASIARLRLRCRERGITEIGLAGQG-V 1123
Query 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELVQMVADLIT 1200
++SPL L DS QVRL+R+Y A +RATT+ V +PIPR GG+G+ R+RD EL++ + +T
Sbjct 1124 KISPLPLLDSEQVRLRRLYSSATFRATTSVVTLPIPRTGGVGSARLRDDELIEYLTTFLT 1183
Query 1201 ALAGKP 1206
L +P
Sbjct 1184 QLKPEP 1189
>gi|262201520|ref|YP_003272728.1| transcription-repair coupling factor [Gordonia bronchialis DSM
43247]
gi|262084867|gb|ACY20835.1| transcription-repair coupling factor [Gordonia bronchialis DSM
43247]
Length=1195
Score = 1518 bits (3930), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 796/1210 (66%), Positives = 929/1210 (77%), Gaps = 50/1210 (4%)
Query 7 ACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG--PLLV 64
AC+DT I+G+ RA + L AP +AR V + LA+ PLLV
Sbjct 14 ACADTAISGI---------------RARRDEVHVDLTAPDAARPFVVACLAKDADAPLLV 58
Query 65 VTATGREADDLAAELRGVFG--DAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAHPD 122
V+A GREADDL AEL + DAVA PSWETLPHERLSP DTVG RL L RLA+P
Sbjct 59 VSANGREADDLTAELAELLDEPDAVAQFPSWETLPHERLSPSADTVGARLAVLHRLANPG 118
Query 123 DAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVDMV 182
D+ PL VVVT+VRSL+QPM P LG + ++L G E FDG++ LVE+AY RVDMV
Sbjct 119 DS----PLRVVVTTVRSLVQPMAPGLGDVATISLAEGFEIDFDGLLTDLVEMAYERVDMV 174
Query 183 GRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAFAC 242
GRRGEFAVRGGILD+F TA++PVRVEFWGDEITEMR FSVADQRS PE++ + C
Sbjct 175 GRRGEFAVRGGILDVFPTTADYPVRVEFWGDEITEMRAFSVADQRSQPEVEATRVDIHPC 234
Query 243 RELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDGHA 302
RELLL++++R RAA+LA++ + ++ML KLAEGI V+GMEA++P L
Sbjct 235 RELLLTDEIRTRAAELASQFEGDPTL-----AEMLTKLAEGIPVNGMEALIPALVDGRMQ 289
Query 303 LLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQ--- 359
LLT+ +P GT VL+ DPEKVRTRAADL +TG EFLEASW+ AA+G Q P+D
Sbjct 290 LLTEVVPAGTRVLILDPEKVRTRAADLSKTGAEFLEASWTAAAMGA---QGPLDGRSSQA 346
Query 360 ----LGGSGFVELDQVRAAAARTGHPWWTLSQLS--DESAIELDVRAAPSARGHQRDIDE 413
L S + LD+VR G WWT+S L+ D+ + LD+ P+ RG +I
Sbjct 347 LGVDLQASAYRPLDEVRETTLAAGRSWWTISPLATGDDHEVVLDLAPGPAPRGDDNEIVA 406
Query 414 IFAMLRAHIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPL 473
+FA LRAH+ G AA+V G GTA RV ERL++++ P + +PG P PG V V G L
Sbjct 407 VFAQLRAHVRAGQTAAIVVAGKGTAQRVGERLADAEVPHVIAEPGHRPAPGEVSVFGGTL 466
Query 474 RDGVIIPGANLVVITETDLTGSRVSAA-EGKRLAAKRRNIVDPLALTAGDLVVHDQHGIG 532
R G++ P A LV++TE DLTG+RV+ +G++L AKRRN VDPLALTAGDLVVHDQHGIG
Sbjct 467 RHGLVCPDAGLVIVTEADLTGTRVANVRDGRKLPAKRRNQVDPLALTAGDLVVHDQHGIG 526
Query 533 RFVEMVERTVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSR 592
+FVEM+ERTV GARREYLVLEYA +KRG + D+LYVPMD+LDQLSRYVGG+ P+LS+
Sbjct 527 KFVEMIERTVSGARREYLVLEYAPSKRG---QPGDRLYVPMDALDQLSRYVGGEQPSLSK 583
Query 593 LGGSDWANTKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVD 652
LGGSDW NTK KAR+AVREIAGELV LYA R A+PGHAF PDTPWQ E+EDAF FTETVD
Sbjct 584 LGGSDWQNTKRKARKAVREIAGELVQLYAARHAAPGHAFGPDTPWQQEMEDAFDFTETVD 643
Query 653 QLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQ 712
Q+T I EVKADME+P+PMDRVI GDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTT+LA Q
Sbjct 644 QMTVIGEVKADMERPVPMDRVIVGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTILAQQ 703
Query 713 HLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLG 772
HLQTF ERMSGFPV ++GLSRFTDA ESR +ID +A G VDIVIGTHRLLQTGV WKDLG
Sbjct 704 HLQTFSERMSGFPVRVRGLSRFTDARESREIIDAMATGEVDIVIGTHRLLQTGVTWKDLG 763
Query 773 LVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERY 832
LV+VDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMS+AGIREMSTILTPPEER+
Sbjct 764 LVIVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERH 823
Query 833 PVLTYVGPHDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQ 892
PVLTYVG + KQ+AAA+RRELLRDGQ FYVHNRVS+ID A + +VPEARVVVAHGQ
Sbjct 824 PVLTYVGAYAPKQVAAAIRRELLRDGQVFYVHNRVSTIDKTARDIAAMVPEARVVVAHGQ 883
Query 893 MPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVG 952
M ED LE TV FWNRE D+LVCTTI+ETGLDISNANTLIV+RA+ GLSQLHQLRGRVG
Sbjct 884 MNEDQLEKTVSGFWNREFDVLVCTTIIETGLDISNANTLIVDRAENLGLSQLHQLRGRVG 943
Query 953 RSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQS 1012
RSRERGYAY LY P+ PLTETAYDRLATIAQNNELGAGMAVALKDLE+RGAGNVLG EQS
Sbjct 944 RSRERGYAYLLYSPERPLTETAYDRLATIAQNNELGAGMAVALKDLELRGAGNVLGAEQS 1003
Query 1013 GHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIA 1072
GHVAGVGFDLYVRLVGEA+E AYRAAADGQ V T+ E ++VRIDLPVDAH+P +Y+
Sbjct 1004 GHVAGVGFDLYVRLVGEAVE----AYRAAADGQPV-TSRETEEVRIDLPVDAHIPVEYVD 1058
Query 1073 SDRLRLEGYRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDV 1132
SDRLRLE YR+LA+A D V V+ ELTDRYG P RLAA+ARLRL CR GIT++
Sbjct 1059 SDRLRLEAYRKLASAIDDAAVDGVIAELTDRYGEPPVETTRLAAIARLRLRCRERGITEI 1118
Query 1133 TAASAATVRLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELV 1192
A +++SPL L DS QVRLKR+Y A+YRATT+ V +PIPR GG+G+ R+RD EL+
Sbjct 1119 GLAGTG-LKISPLPLLDSEQVRLKRLYSAANYRATTSVVTLPIPRTGGVGSARLRDDELI 1177
Query 1193 QMVADLITAL 1202
+ +T L
Sbjct 1178 VYLTTFLTQL 1187
>gi|333921138|ref|YP_004494719.1| transcription-repair coupling factor [Amycolicicoccus subflavus
DQS3-9A1]
gi|333483359|gb|AEF41919.1| Transcription-repair coupling factor [Amycolicicoccus subflavus
DQS3-9A1]
Length=1201
Score = 1506 bits (3900), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 793/1200 (67%), Positives = 938/1200 (79%), Gaps = 24/1200 (2%)
Query 14 AGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQGPLLVVTATGREAD 73
+ L + AL QQ+ + A GR E TL+AP AR +A+ALA P+L+VTA REA+
Sbjct 12 SALFDFALGDAALQQV-RDAVGR-TERTLVAPLGARPFIAAALASVAPVLLVTANRREAE 69
Query 74 DLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAHPDDAQLGPPLGVV 133
DL +EL+GV GD VAL PSWETLPHERLSPG DTVG RL LRRLA PDDA G PL V+
Sbjct 70 DLTSELQGVLGDTVALFPSWETLPHERLSPGADTVGQRLQVLRRLARPDDATFGAPLKVI 129
Query 134 VTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVDMVGRRGEFAVRGG 193
V VR+++QPM+ LG P+ L +G+E FD ++A L E AY RVDMV +RGE+AVRGG
Sbjct 130 VAPVRAVIQPMSRGLGERAPIVLRIGEERGFDDLLAELTEFAYKRVDMVAKRGEYAVRGG 189
Query 194 ILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAFACRELLLSEDVRA 253
ILDIF PTAEHP+R+EFWGDE+TE+R FSVADQRS+ + ++A CRELLL++ R
Sbjct 190 ILDIFPPTAEHPIRIEFWGDEVTELREFSVADQRSLSGGAVEVVIAPPCRELLLTDSARE 249
Query 254 RAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDGHALLTDQLPDGTP 313
RAA LAA H +S V ++ KL+ GI V+GMEA++P L LL + LP GT
Sbjct 250 RAAALAAAHAGNDSLV-----ELFDKLSSGIPVEGMEALIPALTEGPLELLPELLPQGTV 304
Query 314 VLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVE--QLGGSGFVELDQV 371
V++CDPEK RA DL +G EFLEASW+ A+ G P+D L S F L V
Sbjct 305 VVICDPEKTNARADDLRSSGTEFLEASWAAASFGGG---VPIDSRTLDLSASAFKPLPFV 361
Query 372 RAAAARTGHPWWTLSQLSDESAIEL--DVRAAPSARGHQRDIDEIFAMLRAHIATGGYAA 429
R A G WW L+QL+ S EL V+AAP+ RG +++I FAMLRAHI+ GG AA
Sbjct 362 RERAVAVGRGWWDLTQLASGSDDELVLPVQAAPAMRGSEQEIATTFAMLRAHISQGGRAA 421
Query 430 LVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIPGANLVVITE 489
+V PG GTA R ERL +++ PA +L+PG+ GVV +L L GV+ A L+V+TE
Sbjct 422 IVVPGAGTAQRYKERLLDAEVPAALLEPGKPLSEGVVNLLCATLSSGVVFEDAQLIVLTE 481
Query 490 TDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREY 549
+DLTG+R + ++LA+KRRN VDPLAL AGDLVVHDQHGIGRFVEM ERTV GARREY
Sbjct 482 SDLTGNRATTTPTRKLASKRRNQVDPLALQAGDLVVHDQHGIGRFVEMAERTVSGARREY 541
Query 550 LVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWANTKTKARRAV 609
LV+EYA++KRG D+L+VPM+SLDQLSRYVGG+AP LS++GGSDW NTK KAR+AV
Sbjct 542 LVIEYAASKRG---HPGDRLFVPMESLDQLSRYVGGEAPGLSKMGGSDWQNTKRKARKAV 598
Query 610 REIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEVKADMEKPIP 669
REIA ELV LYAKRQASPGHAF PD+PWQ+ELEDAF F ET DQLTAI EVK DME+ +P
Sbjct 599 REIAAELVQLYAKRQASPGHAFGPDSPWQSELEDAFAFVETDDQLTAISEVKGDMERGVP 658
Query 670 MDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGERMSGFPVTIK 729
MDRV+CGDVG+GKTEIAVRAAFKAVQD KQVAVLVPTTLLA QH +TF +RM+GFPV IK
Sbjct 659 MDRVVCGDVGFGKTEIAVRAAFKAVQDNKQVAVLVPTTLLAQQHTETFTQRMAGFPVKIK 718
Query 730 GLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEH 789
LSRFT +SRAVI GLADG+VD+VIGTHRLLQTGVRWKDLGLV+VDEEQRFGVEHKEH
Sbjct 719 QLSRFTGPTDSRAVIAGLADGTVDVVIGTHRLLQTGVRWKDLGLVIVDEEQRFGVEHKEH 778
Query 790 IKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQIAAA 849
IK+LR+HVD+LTMSATPIPRTLEMSLAGIREMSTILTPPEER PVLTYVG ++DKQ+ AA
Sbjct 779 IKALRSHVDMLTMSATPIPRTLEMSLAGIREMSTILTPPEERLPVLTYVGAYEDKQVGAA 838
Query 850 LRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLETTVQRFWNRE 909
+RRELLRDGQ FYVHNRVSSI+ AA +R+LVPEARVVVAHGQM E+ LETTVQ FWNRE
Sbjct 839 IRRELLRDGQVFYVHNRVSSIEKAAKHIRDLVPEARVVVAHGQMNEEALETTVQGFWNRE 898
Query 910 HDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPPQVP 969
D+LVCTTIVETGLDISNANTLIVERADT GLSQLHQLRGRVGR RERGYAYFLYP
Sbjct 899 FDVLVCTTIVETGLDISNANTLIVERADTLGLSQLHQLRGRVGRGRERGYAYFLYPSNRV 958
Query 970 LTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGFDLYVRLVGE 1029
LTETAYDRLATI+QN++LGAGMAVA+KDLEIRGAGNVLG EQSGHVAGVGFDLY+RLVGE
Sbjct 959 LTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYIRLVGE 1018
Query 1030 ALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEGYRRLAAASS 1089
A+E A++A ADG+ V EE K+V+IDLPVDAH+PPDY++SDRLRLE YR++AAA
Sbjct 1019 AVE----AFKAVADGRPVEAPEEKKEVKIDLPVDAHIPPDYVSSDRLRLEAYRKIAAAQG 1074
Query 1090 DREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATVRLSPLTLPD 1149
D E+ A +EL DRYG LPE +RL +VARLRL+CR G+TDV A +RL+P+TLPD
Sbjct 1075 DDELDAATEELLDRYGPLPEEVKRLLSVARLRLMCRERGLTDV-AVVGTQLRLTPMTLPD 1133
Query 1150 SAQVRLKRMYPGAHYRATTATVQVPIPRAG-GLGA-PRIRDVELVQMVADLITALAGKPR 1207
S QVRLKR+YP A YR TT+ +Q+P+PR+G G A PR+RD ++VQ VAD +T+L G P+
Sbjct 1134 SKQVRLKRLYPSAQYRPTTSQIQLPLPRSGRGTPADPRVRDNDVVQFVADFLTSLDGLPK 1193
>gi|326385186|ref|ZP_08206853.1| transcription-repair coupling factor [Gordonia neofelifaecis
NRRL B-59395]
gi|326196090|gb|EGD53297.1| transcription-repair coupling factor [Gordonia neofelifaecis
NRRL B-59395]
Length=1193
Score = 1493 bits (3865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 784/1203 (66%), Positives = 913/1203 (76%), Gaps = 33/1203 (2%)
Query 13 IAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALAR--QGPLLVVTATGR 70
+ GL A F QL +R G L + AP +AR V + LA + P+LVVTA GR
Sbjct 6 LTGLTSFAFRDAAFGQLRERIG--QARLDITAPDAARPFVVAQLAEVSEHPVLVVTANGR 63
Query 71 EADDLAAELR-----GVFGD-AVALLPSWETLPHERLSPGVDTVGTRLMALRRLAHPDDA 124
EADDL EL G G VA PSWETLPHERLSP DTVG RL L RLA P A
Sbjct 64 EADDLTTELAELLPCGAGGTPVVAQFPSWETLPHERLSPSADTVGARLAVLSRLADPSVA 123
Query 125 QLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVDMVGR 184
PL VV+ +VRSL+QPM P LG M +TLT G E+ FD ++ +LVE+AY RVDMVG
Sbjct 124 ----PLRVVIATVRSLVQPMAPGLGGMRAVTLTEGSEAEFDALIEKLVEMAYERVDMVGA 179
Query 185 RGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAFACRE 244
RGEFAVRGGILDIF TA++PVRVEFWGDEIT++R FSVADQR+ PEID + CRE
Sbjct 180 RGEFAVRGGILDIFPTTADYPVRVEFWGDEITDIRAFSVADQRTQPEIDTSVVQIHPCRE 239
Query 245 LLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDGHALL 304
L+L+ VR RAA LA E ++L KLAEGI V+GMEA++P L +L
Sbjct 240 LVLTAGVRERAAALA------EDVTDEGLREILTKLAEGIPVEGMEALIPALVDGRMQML 293
Query 305 TDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALG-TAENQAPVDVEQLGGS 363
T+ +PDGT VLV DPEKVRTRA DL RTG EFLEASW+ AALG TA A L S
Sbjct 294 TEVMPDGTRVLVLDPEKVRTRAVDLARTGEEFLEASWNAAALGATAPVSAGEPAIDLSAS 353
Query 364 GFVELDQVRAAAARTGHPWWTLSQLSDESA--IELDVRAAPSARGHQRDIDEIFAMLRAH 421
+ +D V+AA G WWT+S LS S +ELD++ P+ G+ ++ + LRA
Sbjct 354 AYRSVDDVQAATVDAGRSWWTMSPLSAGSGEELELDLQPGPAPHGNPDELTAFMSSLRAQ 413
Query 422 IATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIPG 481
IA+GG AAL+A G GTA R V+RL E++ PA +++PG VGV G LR G++ P
Sbjct 414 IASGGRAALIAAGRGTAMRFVDRLGEAEVPARLVEPGDELPDDAVGVFHGTLRRGLVCPS 473
Query 482 ANLVVITETDLTGSRV-SAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540
A V+ TE D+TG+RV A +G+RL AKRRN VDPLALTAGDLVVHDQHGIG+FVEM+ER
Sbjct 474 AGFVIATEADVTGARVVGAKDGRRLPAKRRNQVDPLALTAGDLVVHDQHGIGKFVEMIER 533
Query 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600
TV GARREYLV+EYA KRG + D+LYVPMD+LDQLSRYVGG+ P LS+LGGSDWAN
Sbjct 534 TVSGARREYLVIEYAPGKRG---QPGDRLYVPMDALDQLSRYVGGEQPGLSKLGGSDWAN 590
Query 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660
TK KAR+AVREIAGELV LYA R A+PG AFS DTPWQ E+EDAF +TETVDQ+T I EV
Sbjct 591 TKRKARKAVREIAGELVRLYAARHAAPGFAFSADTPWQREMEDAFDYTETVDQMTVIGEV 650
Query 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720
K+DMEKP+PMDRV+ GDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTT+LA QHLQTF ER
Sbjct 651 KSDMEKPVPMDRVVVGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTILAGQHLQTFTER 710
Query 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780
M GFPV ++GLSRFTD AES+ +I +A G VD+VIGTHRLLQTG+RWKDLGLV+VDEEQ
Sbjct 711 MDGFPVKVRGLSRFTDPAESKEIIAQMASGEVDVVIGTHRLLQTGIRWKDLGLVIVDEEQ 770
Query 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840
RFGVEHKEHIK+LRTHVDVLTMSATPIPRTLEMS+AGIREMSTILTPPEER+PVLTYVG
Sbjct 771 RFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPVLTYVGA 830
Query 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900
+ DKQ+AA++RRELLRDGQ FYVHNRVS+ID A + +VPEARVVVAHGQM E+ LE
Sbjct 831 YSDKQVAASIRRELLRDGQVFYVHNRVSTIDKTAKHIANMVPEARVVVAHGQMGEEQLER 890
Query 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960
TVQ FW+RE+D+LVCTTI+ETGLDISNANTLIV+RA+ FGLSQLHQLRGRVGRSRERGYA
Sbjct 891 TVQGFWDREYDVLVCTTIIETGLDISNANTLIVDRAENFGLSQLHQLRGRVGRSRERGYA 950
Query 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020
Y LY P PLTETAYDRLATIAQNNELGAGMAVALKDLE+RGAGNVLG EQSGHVAGVGF
Sbjct 951 YLLYSPDKPLTETAYDRLATIAQNNELGAGMAVALKDLELRGAGNVLGAEQSGHVAGVGF 1010
Query 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080
DLYVRLVGEA+E AYRAAADG+ V T EE +VRIDLPVDAH+P +Y+ +DRLRLE
Sbjct 1011 DLYVRLVGEAVE----AYRAAADGKPVAT-EENVEVRIDLPVDAHIPVEYVEADRLRLEA 1065
Query 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140
YR+LA+A D +V V+ EL DRYG P +RLAA+ARLRL CR G+ +V A ++
Sbjct 1066 YRKLASAGGDDDVDEVMSELADRYGEPPVETQRLAAIARLRLRCRERGVAEVGLA-GQSI 1124
Query 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELVQMVADLIT 1200
R+SPL L DS QVRL RMY A YRA T + +PIPR GG+G+ R+RD EL+ V +
Sbjct 1125 RISPLLLLDSQQVRLARMYSSASYRAATHMITLPIPRTGGVGSARLRDTELIDYVVTFLQ 1184
Query 1201 ALA 1203
+A
Sbjct 1185 TIA 1187
>gi|134097431|ref|YP_001103092.1| transcription-repair coupling factor [Saccharopolyspora erythraea
NRRL 2338]
gi|291004579|ref|ZP_06562552.1| transcription-repair coupling factor [Saccharopolyspora erythraea
NRRL 2338]
gi|133910054|emb|CAM00166.1| transcription-repair coupling factor [Saccharopolyspora erythraea
NRRL 2338]
Length=1195
Score = 1429 bits (3699), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 743/1161 (64%), Positives = 888/1161 (77%), Gaps = 38/1161 (3%)
Query 61 PLLVVTATGREADDLAAELRGVFG-DAVALLPSWETLPHERLSPGVDTVGTRLMALRRLA 119
P+L+VTATGREA+++AA + + G D V + PSWETLPHERLSP DTVG RL LRRLA
Sbjct 54 PVLLVTATGREAEEVAAAVSDLIGSDGVEVFPSWETLPHERLSPRADTVGRRLAVLRRLA 113
Query 120 HPDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRV 179
HP++ G + V+VT+VRSL+QP+ P LG + P+ L VGDE F+ +V +L LAY RV
Sbjct 114 HPEEHDHGR-IRVLVTTVRSLIQPIAPGLGELAPVRLRVGDEHDFEELVEKLAALAYNRV 172
Query 180 DMVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVA 239
DMV +RGEFAVRGGI+D+F PT EHP+RVEFWGDE+TE+R FSVADQRS+PE TL A
Sbjct 173 DMVEKRGEFAVRGGIVDVFPPTEEHPLRVEFWGDEVTEVRPFSVADQRSLPEAQDTTLFA 232
Query 240 FACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSD 299
ACRELL++E V+ RAA+LA +H A ++ML K+A G V+GMEA++P L
Sbjct 233 PACRELLITEQVQERAAKLAEQHEA-----DAHLNEMLGKIAGGAPVEGMEALIPALCEG 287
Query 300 GHALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQ 359
LLTD +P GT V+V DPEKVR RAADL+RTG+EFLEASW VAA G +AP+D
Sbjct 288 EMRLLTDLVPGGTHVVVADPEKVRARAADLVRTGQEFLEASWMVAADG---GRAPID--- 341
Query 360 LGGSGFVELDQVRAAAARTGHPWWTLSQLS------DESAIELDVRAAPSARGHQRDIDE 413
LG S + L +V A TG PWWTL+QLS D+ + L ++ + RG +++
Sbjct 342 LGASAYRGLAEVAAHTESTGLPWWTLTQLSSEDTEDDDGVVRLALKQVDAYRG---EVER 398
Query 414 IFAMLRAHIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPG--QAPKPGVVGVLQG 471
FA LRAH GG A LV G GTA R V++L E + PA + + G P+PGVV V +G
Sbjct 399 AFADLRAHTTAGGAAVLVVAGAGTAQRAVQQLREGELPARLAEDGLTAEPEPGVVTVARG 458
Query 472 PLRDGVIIPGANLVVITETDLTGSR--VSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQH 529
L DG P LVV+TE DLTG R S + +R+ ++RRN VDPLAL AGD VVH+QH
Sbjct 459 GLEDGFAAPEVALVVLTEADLTGGRGGTSTKDMRRMPSRRRNAVDPLALKAGDFVVHEQH 518
Query 530 GIGRFVEMVERTVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPA 589
GIG++VEMV+RTVGGA REYLVLEYAS+KRG + D+L+VP D LD++SRYVGG+ P
Sbjct 519 GIGKYVEMVQRTVGGATREYLVLEYASSKRG---QPGDRLFVPTDQLDEVSRYVGGELPT 575
Query 590 LSRLGGSDWANTKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTE 649
L++LGGSDW NTK KAR+AV+EIA ELV LYA RQ++PGHAF DTPWQ ELEDAF +TE
Sbjct 576 LNKLGGSDWKNTKAKARKAVKEIAAELVQLYAARQSAPGHAFGADTPWQRELEDAFPYTE 635
Query 650 TVDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLL 709
T DQL AI+EVKADM++ +PMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLL
Sbjct 636 TGDQLAAIDEVKADMQRAVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLL 695
Query 710 ADQHLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWK 769
A QHL TF +RM FPVT+KGLSRFTD ES GLA+G+VD+VIGTHRLLQTGVR+K
Sbjct 696 AQQHLNTFTDRMRSFPVTVKGLSRFTDPLESEQTTTGLAEGTVDVVIGTHRLLQTGVRYK 755
Query 770 DLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPE 829
DLGLV+VDEEQRFGVEHKEHIK+LRTHVDVLTMSATPIPRTLEMS+AGIREMSTILTPPE
Sbjct 756 DLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPE 815
Query 830 ERYPVLTYVGPHDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVA 889
ER+PVLTYVG +D+KQ+AAA+RRELLRDGQ F+VHNRV +I+ AA +RELVPEAR+V A
Sbjct 816 ERHPVLTYVGAYDEKQVAAAIRRELLRDGQVFFVHNRVQTIEKAARHLRELVPEARIVTA 875
Query 890 HGQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRG 949
HGQM ED LE +Q FW REHD+LVCTTIVETGLDISNANTLIVER+D GLSQLHQLRG
Sbjct 876 HGQMNEDRLEKIIQGFWEREHDVLVCTTIVETGLDISNANTLIVERSDVLGLSQLHQLRG 935
Query 950 RVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGI 1009
RVGR+RERGYAYFLYP + PLT+TA+DRLATIAQN+ELGAGMAVA+KDLEIRGAGN+LG
Sbjct 936 RVGRARERGYAYFLYPEEKPLTDTAHDRLATIAQNSELGAGMAVAMKDLEIRGAGNILGA 995
Query 1010 EQSGHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPD 1069
EQSGH+AGVGFDLYVRLVGEA+E A+R A + EE +VR+DLPVDAH+P D
Sbjct 996 EQSGHIAGVGFDLYVRLVGEAVE----AFRRHAGAEPGAGEEELPEVRVDLPVDAHIPHD 1051
Query 1070 YIASDRLRLEGYRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGI 1129
Y+ +RLRLE YR++AAA + AV ELTDRYG+LPEP RL VA R LCR G+
Sbjct 1052 YVPGERLRLEAYRKIAAAGDTEALDAVRAELTDRYGSLPEPVERLLKVAAFRQLCRAHGV 1111
Query 1130 TDVTAASAATVRLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGG----LGAPR 1185
T+VT ++R +PL L DS VRLKR+YP A Y+A TV VP P G +GAP
Sbjct 1112 TEVT-QQGTSLRAAPLELADSQLVRLKRLYPKAVYKAAVRTVSVPRPTEGAAGGRIGAPP 1170
Query 1186 IRDVELVQMVADLITALAGKP 1206
+RD L+ A L+ +LAG+P
Sbjct 1171 LRDEALLDWCAKLLESLAGRP 1191
>gi|256374814|ref|YP_003098474.1| transcription-repair coupling factor [Actinosynnema mirum DSM
43827]
gi|255919117|gb|ACU34628.1| transcription-repair coupling factor [Actinosynnema mirum DSM
43827]
Length=1187
Score = 1419 bits (3672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 770/1216 (64%), Positives = 913/1216 (76%), Gaps = 46/1216 (3%)
Query 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60
M+ PGP ++GL+ L + L AG EL L P +AR LVA+AL+R
Sbjct 1 MSQPGP------LSGLLTAVLPDKALRALADAAGS--PELELEGPPAARPLVAAALSRTS 52
Query 61 PLLVVTATGREADDLAAELRGVFG-DAVALLPSWETLPHERLSPGVDTVGTRLMALRRLA 119
P+L VTATGREA++LA+ LR + G +AVA+ PSWETLPHERLSP DTVG RL LRRLA
Sbjct 53 PVLAVTATGREAEELASVLRDLVGPEAVAIFPSWETLPHERLSPRADTVGARLQVLRRLA 112
Query 120 HPDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRV 179
HP D PL VV +VRSL+QPM P LG +EPL L G E FD ++ RL ELAYTRV
Sbjct 113 HPGDR----PLRAVVATVRSLIQPMAPGLGDLEPLDLATGSEHDFDALLHRLAELAYTRV 168
Query 180 DMVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVA 239
DMV +RGEFAVRGGILD+F PTAEHP+RVEFWGDE+TE+R FSVADQRS+P+ + A
Sbjct 169 DMVEKRGEFAVRGGILDVFPPTAEHPLRVEFWGDEVTEIRPFSVADQRSLPK-QVDAFTA 227
Query 240 FACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSD 299
CRELLL+E VRARA +LAA H A ++ML KLAEGI +GMEA++P L
Sbjct 228 PPCRELLLTERVRARAQELAAEHEA-----DAQLAEMLTKLAEGIPSEGMEALIPALCDG 282
Query 300 GHALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQ 359
LLTD +PDGT VLV DPEK+R RA DL+RTG+EFLEASW AA G +AP+D
Sbjct 283 ELQLLTDLVPDGTHVLVNDPEKIRARARDLVRTGQEFLEASWMAAAGG---GKAPID--- 336
Query 360 LGGSGFVELDQVRAAAARTGHPWWTLSQLSDESA--IELDVRAAPSARGHQRDIDEIFAM 417
LG S + LD+V AA PWWTLSQL+ E + + L+ + +Q D+D FA
Sbjct 337 LGASAYRSLDEVADAARAADKPWWTLSQLTTEGSDVLRLEFK---HVHAYQGDVDRAFAD 393
Query 418 LRAHIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDP-GQAPKPGVVGVLQGPLRDG 476
LRAH A GG A LV PGTGTA R E+L E+ A +D + P+ G V V++G L DG
Sbjct 394 LRAHTAAGGTAVLVVPGTGTAQRATEQLREAQVGAVCVDSLDEPPRTGAVTVVRGALEDG 453
Query 477 VIIPGANLVVITETDLTGSR--VSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRF 534
+P LVV+TETDLTG R S + +R+ ++RRN VDPLAL GD VVH+QHGIGR+
Sbjct 454 FALPELALVVLTETDLTGGRGGTSTKDMRRMPSRRRNAVDPLALRTGDYVVHEQHGIGRY 513
Query 535 VEMVERTVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLG 594
VEMV+RTV GA REYLVLEYAS+KRG + D+L+VP D LD++SRYVGG+ P L++LG
Sbjct 514 VEMVQRTVAGATREYLVLEYASSKRG---QPGDRLFVPTDQLDEVSRYVGGELPTLNKLG 570
Query 595 GSDWANTKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQL 654
GSDW NTK KA++AV++IA ELV LYA RQ++PGHAF+PDTPWQ ELEDAF FTETVDQ+
Sbjct 571 GSDWKNTKAKAKKAVKQIAAELVQLYAARQSAPGHAFAPDTPWQRELEDAFPFTETVDQM 630
Query 655 TAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHL 714
AI+EVKADME+ +PMDRVICGDVGYGKTEIAVRAAFKAVQDGKQV VLVPTTLLA QHL
Sbjct 631 AAIDEVKADMERGVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVVVLVPTTLLAQQHL 690
Query 715 QTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLV 774
TF ERM FPV ++GLSRFTD E+ GLA+G VD+VIGTHRLLQ G+R+KDLGLV
Sbjct 691 NTFTERMRAFPVVVRGLSRFTDPTEAEQTTTGLAEGDVDVVIGTHRLLQKGLRYKDLGLV 750
Query 775 VVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPV 834
+VDEEQRFGVEHKEHIK+LRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEER+P+
Sbjct 751 IVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERHPI 810
Query 835 LTYVGPHDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMP 894
LTYVG + DKQ+ AA+RRELLRDGQ FYVHNRVSSI+ AA R+REL PEARVV AHGQM
Sbjct 811 LTYVGGYADKQVGAAIRRELLRDGQVFYVHNRVSSIEKAARRIRELAPEARVVTAHGQMN 870
Query 895 EDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRS 954
ED LE +Q FW RE+D+LV TTIVETGLDISNANTLIVER D GLSQLHQLRGRVGR
Sbjct 871 EDKLEKIIQGFWEREYDVLVSTTIVETGLDISNANTLIVERGDLLGLSQLHQLRGRVGRG 930
Query 955 RERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGH 1014
RERGYAYFLYPP+ PL+ETA+DRLATIAQN ELGAGMAVA+KDLEIRGAGN+LG EQSGH
Sbjct 931 RERGYAYFLYPPESPLSETAHDRLATIAQNTELGAGMAVAMKDLEIRGAGNILGAEQSGH 990
Query 1015 VAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASD 1074
+AGVGFDLYVRLVGEA+E +R + A ADG+ EP +VR++LPVDAH+P DY+ +
Sbjct 991 IAGVGFDLYVRLVGEAVEAFRRS--AGADGE---LEVEPAEVRVELPVDAHIPHDYVPGE 1045
Query 1075 RLRLEGYRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTA 1134
RLRLE YR++AAA + + AV DEL DRYGA P P RL VARLR CR G+T+V A
Sbjct 1046 RLRLEAYRKIAAAVDEAGLTAVRDELKDRYGAPPLPVERLLDVARLRHTCRAHGVTEV-A 1104
Query 1135 ASAATVRLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGG----LGAPRIRDVE 1190
+++R +PL L DS VRL+R++P A Y+ +T+ P P G +GAP +RD E
Sbjct 1105 LQGSSIRFAPLELKDSQVVRLRRLHPKAVYKQAVSTITTPRPTEGAAGGRMGAPPLRDQE 1164
Query 1191 LVQMVADLITALAGKP 1206
L+ A + +LAG P
Sbjct 1165 LLAWCAHFLESLAGAP 1180
>gi|319949680|ref|ZP_08023714.1| transcription-repair coupling factor [Dietzia cinnamea P4]
gi|319436671|gb|EFV91757.1| transcription-repair coupling factor [Dietzia cinnamea P4]
Length=1222
Score = 1415 bits (3664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 757/1240 (62%), Positives = 905/1240 (73%), Gaps = 49/1240 (3%)
Query 1 MTAPGPACSDT--PIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALAR 58
MT+ PA + T ++GL +S P L RAG D + AP S R + ALA
Sbjct 1 MTSTAPAVTSTTAALSGLAGAVISNPALADL--RAGLDRDAAVVRAPESLRPFLVGALAE 58
Query 59 QGPLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRL 118
+ PLLVVTAT RE ++LA EL G++ VA PSWETLPHERLSP DT+G RL L +
Sbjct 59 RAPLLVVTATERECEELADELSGMYDGEVAQFPSWETLPHERLSPAADTIGRRLEVLSAV 118
Query 119 AHPDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTR 178
G ++V + RS++QP++P EP+ LT GDE ++ARL E AYTR
Sbjct 119 ------MAGRAPRIIVAAARSVVQPISPAAARREPVRLTRGDEVDPTDLMARLAEFAYTR 172
Query 179 VDMVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLV 238
DMV RRG+ AVRGGI+D+F TA+HP+R+EF GDEI E+R FSVADQRS+P+ ++ +V
Sbjct 173 EDMVARRGDIAVRGGIVDVFPTTADHPLRIEFDGDEIAEIREFSVADQRSLPDGEVEQVV 232
Query 239 AFACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWS 298
+ CRELLL +DVRARA QLAA H A + +++L LAEGI DGMEA+ VL
Sbjct 233 LYPCRELLLDDDVRARAGQLAAEHRA-----NPTLAELLDSLAEGIPRDGMEALTSVLVP 287
Query 299 DGHALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVE 358
A L +PD T V+VCDP+KVR RAADL GREFLEASW+ A +G APVD E
Sbjct 288 GEMATLPMLMPDDTRVVVCDPDKVRRRAADLASAGREFLEASWTAATMG---GDAPVDSE 344
Query 359 --QLGGSGFVELDQVRAAAARTGHPWWTL------SQLSDESAIELDVRAAPSARGHQRD 410
L GSG+ VR AA G WW L + D + I + P+ RG +
Sbjct 345 TLDLSGSGYRTFSSVREEAAGAGRAWWQLVPPGFLTDPEDGAVITVPAGDPPAPRGKDSE 404
Query 411 IDEIFAMLRAHIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQ 470
++ +F LRA + GG AA+V PG GT R++ERLSE++ PA G P G+V V +
Sbjct 405 MEAMFVRLRALVGAGGRAAMVVPGHGTVARILERLSEAEVPATAAQAGSEPADGLVSVYE 464
Query 471 GPLRDGVIIPGA------NLVVITETDLTGSRV-SAAEGKRLAAKRRNIVDPLALTAGDL 523
L G + G +LVV++ETDLTG+R+ S A K +KRRN VDPLAL AGDL
Sbjct 465 AVLHAGFALTGGADGASGDLVVVSETDLTGNRLGSTARPKARHSKRRNQVDPLALKAGDL 524
Query 524 VVHDQHGIGRFVEMVERTV----GGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQL 579
VVHDQHGIGRFVEMVER V G +RREYLV+EYA KRG D+LYVPM+SL QL
Sbjct 525 VVHDQHGIGRFVEMVERQVRGGDGSSRREYLVIEYAPGKRGAAG---DRLYVPMESLGQL 581
Query 580 SRYVGGQAPALSRLGGSDWANTKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQA 639
SRYVGG+AP LS++GG+DW NTK KAR+AVREIA ELV LYAKRQ++PG AF PDTPWQ
Sbjct 582 SRYVGGEAPTLSKMGGADWQNTKRKARKAVREIATELVQLYAKRQSAPGRAFGPDTPWQR 641
Query 640 ELEDAFGFTETVDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQ 699
E+EDAF FTETVDQL+AIEEVKADMEK PMDRV+ GDVGYGKTE+AVRAAFKAVQDG Q
Sbjct 642 EMEDAFPFTETVDQLSAIEEVKADMEKSAPMDRVVVGDVGYGKTEVAVRAAFKAVQDGTQ 701
Query 700 VAVLVPTTLLADQHLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTH 759
VAVLVPTTLLA QHL TF ERM+GFPVTIKGLSRFT AE++ ++ GLADG+VD+VIGTH
Sbjct 702 VAVLVPTTLLAQQHLATFTERMTGFPVTIKGLSRFTSDAEAKEILKGLADGTVDVVIGTH 761
Query 760 RLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIR 819
RLL TGVRWK+LGLV+VDEEQRFGVEHKEHI SLRTHVDVLTMSATPIPRTLEMSLAGIR
Sbjct 762 RLLATGVRWKNLGLVIVDEEQRFGVEHKEHITSLRTHVDVLTMSATPIPRTLEMSLAGIR 821
Query 820 EMSTILTPPEERYPVLTYVGPHDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRE 879
EMS ILTPPEER PVLTYVG + DK +AAA+RRELLR+GQ FYVHNRV +ID+ AAR+R+
Sbjct 822 EMSQILTPPEERLPVLTYVGAYSDKHVAAAIRRELLREGQVFYVHNRVRTIDSTAARIRD 881
Query 880 LVPEARVVVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTF 939
LVPEARVVVAHGQM E+ LE TV FWNRE+D+LVCTTIVETGLDISNANTLIV+R+D
Sbjct 882 LVPEARVVVAHGQMGEEQLEQTVGGFWNREYDVLVCTTIVETGLDISNANTLIVDRSDQL 941
Query 940 GLSQLHQLRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLE 999
GLSQ+HQLRGRVGRSRERGYAYFLY P+ PLTETAYDRLATIAQNN+LGAGMAVA+KDLE
Sbjct 942 GLSQMHQLRGRVGRSRERGYAYFLYDPEKPLTETAYDRLATIAQNNDLGAGMAVAMKDLE 1001
Query 1000 IRGAGNVLGIEQSGHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRID 1059
+RGAGNVLG EQSGH+AGVGFDLY+RLVGEA+E AYRA ADG+ V T EE ++RI+
Sbjct 1002 LRGAGNVLGAEQSGHIAGVGFDLYIRLVGEAVE----AYRAIADGEKVETQEELGEIRIE 1057
Query 1060 LPVDAHLPPDYIASDRLRLEGYRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVAR 1119
LPVDA +PPDY+ DRLRLE YR+L+ A ++ AVV+EL DRYG LP ARR+ +VAR
Sbjct 1058 LPVDAFIPPDYVDGDRLRLEAYRKLSQAREPGDIDAVVEELLDRYGPLPVEARRVVSVAR 1117
Query 1120 LRLLCRGSGITDVTAASAATVRLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPR-- 1177
LRL+ + + ++ A + +R+ PL L DS Q+RLKRMYP A YRAT TV +P+P+
Sbjct 1118 LRLVAQKYRVREIVLA-GSRLRVGPLDLLDSQQMRLKRMYPAAQYRATQKTVLLPLPKAA 1176
Query 1178 --AGGLGAPRIRDVELVQMVADLITALAGKPRQHIGITNP 1215
G G + RD E++Q AD +TA+AG P + P
Sbjct 1177 GARAGAGGEKARDDEMLQYAADFLTAMAGDPEGSNPVIQP 1216
>gi|302530260|ref|ZP_07282602.1| transcription-repair coupling factor [Streptomyces sp. AA4]
gi|302439155|gb|EFL10971.1| transcription-repair coupling factor [Streptomyces sp. AA4]
Length=1192
Score = 1405 bits (3636), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 762/1219 (63%), Positives = 908/1219 (75%), Gaps = 51/1219 (4%)
Query 8 CSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALA----RQG--- 60
+D ++GL++ L P + +++RAG L L + R LVA+ALA R G
Sbjct 2 VTDAVLSGLLQAILPDPALRGVVERAGA--PLLELQGAVAVRQLVAAALAEDPERGGAGR 59
Query 61 PLLVVTATGREADDLAAELRGVFG-DAVALLPSWETLPHERLSPGVDTVGTRLMALRRLA 119
P+L VTATGREAD+L A L + G D VA PSWETLPHERLSP DTVG RL L RL
Sbjct 60 PVLAVTATGREADELTASLSALLGPDRVADFPSWETLPHERLSPRADTVGRRLEVLHRL- 118
Query 120 HPDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRV 179
H D QL VVV +VRSL+QPM P LG + P+ L VG+E F+ ++ RLVELAYTRV
Sbjct 119 HTGDEQLR----VVVATVRSLIQPMAPGLGSLAPIDLVVGEEQSFEDLLERLVELAYTRV 174
Query 180 DMVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVA 239
DMV +RGEFAVRGGILD+F PTA+HPVRVEFWGDE++E+R F+V+DQRS+P +I + A
Sbjct 175 DMVEKRGEFAVRGGILDLFGPTAQHPVRVEFWGDEVSEIRAFAVSDQRSLPG-EIQRVTA 233
Query 240 FACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSD 299
CRELLL+ DV+ARAA+LA + A ++ML KL+ G+ V+GMEA++PVL
Sbjct 234 PPCRELLLTPDVKARAAELATTYEA-----DAHLAEMLTKLSGGVPVEGMEALIPVLCEG 288
Query 300 GHALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQ 359
ALLTD +P G+ VL+ DPEK+R RAADL+RTG+EFLEASW+ AA G QAP+D
Sbjct 289 ELALLTDAMPQGSHVLLADPEKIRARAADLVRTGQEFLEASWTTAAAG---GQAPID--- 342
Query 360 LGGSGFVELDQVRAAAARTGHPWWTLSQLSDES--AIELDVRAAPSARGHQRDIDEIFAM 417
LG S + EL ++ + A T PWWTL+QL+ E + + AP+ RG +++
Sbjct 343 LGASAYRELSEIASHAQETKRPWWTLTQLTSEDPDVYRVGIEPAPAYRG---ELERAMTD 399
Query 418 LRAHIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDP-GQAPKPGVVGVLQGPLRDG 476
LRAH+A GG LV G GTA R VE+L ++ PA ++ P GVV V G L +G
Sbjct 400 LRAHLAAGGTGVLVVAGQGTASRAVEQLMAAEVPAKHVEVLSDVPPAGVVTVTCGGLAEG 459
Query 477 VIIPGANLVVITETDLTGSRVSAAE-----GKRLAAKRRNIVDPLALTAGDLVVHDQHGI 531
+ P LVV++E DLTG +A ++ ++RR VDPLAL AGD VVHDQHGI
Sbjct 460 FVSPERALVVLSEADLTGRGATAGSSTKDLNTKMPSRRRGAVDPLALKAGDYVVHDQHGI 519
Query 532 GRFVEMVERTVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALS 591
GRFVEMV+RTV GA REYL+LEYAS+KRG + D+L+VP D LD++SRYVGG+ P L+
Sbjct 520 GRFVEMVQRTVAGATREYLLLEYASSKRG---QPGDRLFVPTDQLDEVSRYVGGELPTLN 576
Query 592 RLGGSDWANTKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETV 651
+LGGSDW NTK +A++AV+EIA ELV LYA RQA+PGHAF PDTPWQ+ELEDAF FTET
Sbjct 577 KLGGSDWKNTKARAKKAVKEIAAELVQLYAARQAAPGHAFGPDTPWQSELEDAFPFTETN 636
Query 652 DQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAD 711
DQL AI+EVKADME+ +PMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLA
Sbjct 637 DQLAAIDEVKADMERGVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQ 696
Query 712 QHLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDL 771
QHL TF ERM FPVTIKGLSRFT AES +++ LADG VDIVIGTHRLLQTG+R+KDL
Sbjct 697 QHLNTFTERMRSFPVTIKGLSRFTHKAESDRILEQLADGEVDIVIGTHRLLQTGIRYKDL 756
Query 772 GLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEER 831
GLV+VDEEQRFGVEHKEHIK+LRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPE+R
Sbjct 757 GLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEDR 816
Query 832 YPVLTYVGPHDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHG 891
+P+LTYVG +DDKQ+ AA+RRELLRDGQ FYVHNRVSSI+ AA R+RELVPEARVV AHG
Sbjct 817 HPILTYVGAYDDKQVGAAVRRELLRDGQVFYVHNRVSSIEKAAKRIRELVPEARVVTAHG 876
Query 892 QMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRV 951
QM ED LE +Q FW E+D+LVCTTIVETGLDISNANTLIVER D GL+QLHQLRGRV
Sbjct 877 QMNEDKLEKIIQGFWENEYDVLVCTTIVETGLDISNANTLIVERGDMLGLAQLHQLRGRV 936
Query 952 GRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQ 1011
GR RERGYAYFLYPP+ PLTETA+DRLATIAQN ELGAGMAVA+KDLEIRGAGN+LG EQ
Sbjct 937 GRGRERGYAYFLYPPEAPLTETAHDRLATIAQNTELGAGMAVAMKDLEIRGAGNILGAEQ 996
Query 1012 SGHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYI 1071
SGH+AGVGFDLYVRLVGEA+E +R R A G EE +VR+DLPVDAH+P DY+
Sbjct 997 SGHIAGVGFDLYVRLVGEAVEAFR---RHA--GAEPAEDEELAEVRVDLPVDAHIPHDYV 1051
Query 1072 ASDRLRLEGYRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITD 1131
+RLRLE YR++A+A + AV +EL DRYG P P RL AVA R CR +G+T+
Sbjct 1052 PGERLRLEAYRKIASAPDTAALDAVREELVDRYGQPPAPVTRLLAVAAFRHACRAAGVTE 1111
Query 1132 VTAASAATVRLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPR---AGG-LGAPRIR 1187
V AA T+R +PL L DS VRLKR+YP A Y+A T TV VP P AGG +GAP +R
Sbjct 1112 V-AAQGNTIRFAPLPLMDSQLVRLKRLYPKAMYKAITNTVSVPKPTEGPAGGRMGAPVLR 1170
Query 1188 DVELVQMVADLITALAGKP 1206
D EL+ L+ L P
Sbjct 1171 DQELLDWCTKLLAQLTKTP 1189
>gi|300790028|ref|YP_003770319.1| transcription-repair coupling factor [Amycolatopsis mediterranei
U32]
gi|299799542|gb|ADJ49917.1| transcription-repair coupling factor [Amycolatopsis mediterranei
U32]
Length=1184
Score = 1390 bits (3599), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 753/1210 (63%), Positives = 898/1210 (75%), Gaps = 45/1210 (3%)
Query 13 IAGLVELALSAPTFQQLMQRAGGRPDELT--LIAPASARLLVASALARQGPLLVVTATGR 70
++GL+ L P + +++RAG EL + A +A+ P+L VTATGR
Sbjct 1 MSGLLTAILPDPALRGVVERAGAPLLELQGPIAARQLVAAALAADDGAGKPVLAVTATGR 60
Query 71 EADDLAAELRGVFGDA-VALLPSWETLPHERLSPGVDTVGTRLMALRRLAHPDDAQLGPP 129
EAD+L A L+ + G++ VA PSWETLPHERLSP DTVG RL L RL DD
Sbjct 61 EADELTASLKALIGESRVADFPSWETLPHERLSPRADTVGRRLEVLHRLKTGDD-----D 115
Query 130 LGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVDMVGRRGEFA 189
L VVV +VRSL+QPM P LG + P+ L VG+E F+G++ RLVELAYTRVDMV +RGEFA
Sbjct 116 LRVVVATVRSLIQPMAPGLGSLAPVDLVVGEEQSFEGLLERLVELAYTRVDMVEKRGEFA 175
Query 190 VRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAFACRELLLSE 249
VRGGILD+F PTA+HPVRVEFWGDE++E+R F+V+DQRS+P DI + A CRELLL+
Sbjct 176 VRGGILDLFGPTAQHPVRVEFWGDEVSEIRAFAVSDQRSLPG-DIPRVTAPPCRELLLTR 234
Query 250 DVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDGHALLTDQLP 309
VR +AA+LA + + ++ML KLA+GI V+GMEA++PVL LLTD +P
Sbjct 235 PVREKAAELAKTYES-----DAHLAEMLTKLADGIPVEGMEALIPVLCEGELELLTDAMP 289
Query 310 DGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQLGGSGFVELD 369
GT VL+ DPEK+R RAADL+RTG+EFLEASW+ AA G QAP+D LG S + LD
Sbjct 290 AGTHVLLTDPEKIRARAADLVRTGQEFLEASWTTAAAG---GQAPID---LGASAYRGLD 343
Query 370 QVRAAAARTGHPWWTLSQLSDES--AIELDVRAAPSARGHQRDIDEIFAMLRAHIATGGY 427
++ + A T WWT++QL+ E + V AAP+ RG +++ A LRAH A GG
Sbjct 344 EIASHAQDTKRAWWTITQLTSEDPDVYRVSVEAAPAYRG---ELERATADLRAHTAAGGT 400
Query 428 AALVAPGTGTAHRVVERLSESDTPAGMLDPG--QAPKPGVVGVLQGPLRDGVIIPGANLV 485
A LV G GTA R VE+ S +D PA + G AP PGVV V G L DG I P LV
Sbjct 401 AVLVVAGHGTAARAVEQFSAADVPASLAGDGLKGAPAPGVVTVTCGGLTDGFISPERALV 460
Query 486 VITETDLTGSRVSAAEGKR-----LAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540
V+TE DLTG A + + ++RRN VDPLAL +GD VVH+QHGIGRFVEMV+R
Sbjct 461 VLTEADLTGRGSGAGTSTKDLTTKMPSRRRNAVDPLALKSGDYVVHEQHGIGRFVEMVQR 520
Query 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600
TV GA REYL+LEY S+KRG D+L+VP D LD++S+YVGG+ P L++LGGSDW N
Sbjct 521 TVAGATREYLLLEYGSSKRG---HPGDRLFVPTDQLDEVSKYVGGELPTLNKLGGSDWKN 577
Query 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660
TK +A++AV+EIA ELV LYA RQA+PGHAF PDTPWQ ELEDAF FTET DQL AI+EV
Sbjct 578 TKARAKKAVKEIAAELVQLYAARQAAPGHAFGPDTPWQGELEDAFPFTETNDQLAAIDEV 637
Query 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720
KADME+ +PMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLA QHL TF ER
Sbjct 638 KADMERGVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLNTFHER 697
Query 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780
M FPVTIKGLSRFT+ ES +++ LA G VDIVIGTHRLLQTG+R+KDLGLV+VDEEQ
Sbjct 698 MRSFPVTIKGLSRFTNKTESDIILEQLASGEVDIVIGTHRLLQTGIRYKDLGLVIVDEEQ 757
Query 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840
RFGVEHKEHIK+LRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPE+R+P+LTYVG
Sbjct 758 RFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEDRHPILTYVGA 817
Query 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900
+DDKQ+ AA+RRELLRDGQ FYVHNRVSSI+ AA R+RELVPEARVV AHGQM ED LE
Sbjct 818 YDDKQVGAAIRRELLRDGQVFYVHNRVSSIEKAARRIRELVPEARVVTAHGQMNEDKLEK 877
Query 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960
+Q FW E+D+LVCTTIVETGLDISNANTL+VER D GL+QLHQLRGRVGR RERGYA
Sbjct 878 IIQGFWENEYDVLVCTTIVETGLDISNANTLLVERGDLLGLAQLHQLRGRVGRGRERGYA 937
Query 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020
YFLYPP+ PLTETA+DRLATIAQN ELGAGMAVA+KDLEIRGAGN+LG EQSGH+AGVGF
Sbjct 938 YFLYPPEAPLTETAHDRLATIAQNTELGAGMAVAMKDLEIRGAGNILGAEQSGHIAGVGF 997
Query 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080
DLYVRLVGEA++ +R A EE DVR+DLP+DAH+P DY+ +RLRLE
Sbjct 998 DLYVRLVGEAVDAFRRHAGAEP-----AEEEEMADVRVDLPIDAHIPHDYVPGERLRLEA 1052
Query 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140
YR++AAA + AV +EL DRYG P P RL +VAR R CR +G+T+V A T+
Sbjct 1053 YRKIAAAPDTEGLDAVREELIDRYGQPPAPVNRLLSVARFRHTCREAGVTEV-AVQGNTI 1111
Query 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPR---AGG-LGAPRIRDVELVQMVA 1196
R +PL L DS VRLKR+YP A ++A T TV VP P AGG +GAP +RD EL++
Sbjct 1112 RFAPLPLLDSQMVRLKRLYPKAVFKAVTNTVSVPKPTEGPAGGRIGAPTLRDEELLEWCT 1171
Query 1197 DLITALAGKP 1206
L+ L KP
Sbjct 1172 KLLVQLTKKP 1181
>gi|340531704|gb|AEK46909.1| transcription-repair coupling factor [Amycolatopsis mediterranei
S699]
Length=1184
Score = 1389 bits (3596), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 752/1210 (63%), Positives = 898/1210 (75%), Gaps = 45/1210 (3%)
Query 13 IAGLVELALSAPTFQQLMQRAGGRPDELT--LIAPASARLLVASALARQGPLLVVTATGR 70
++GL+ L P + +++RAG EL + A +A+ P+L VTATGR
Sbjct 1 MSGLLTAILPDPALRGVVERAGAPLLELQGPIAARQLVAAALAADDGAGKPVLAVTATGR 60
Query 71 EADDLAAELRGVFGDA-VALLPSWETLPHERLSPGVDTVGTRLMALRRLAHPDDAQLGPP 129
EAD+L A L+ + G++ VA PSWETLPHERLSP DTVG RL L RL DD
Sbjct 61 EADELTASLKALIGESRVADFPSWETLPHERLSPRADTVGRRLEVLHRLKTGDD-----D 115
Query 130 LGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVDMVGRRGEFA 189
L VVV +VRSL+QPM P LG + P+ L VG+E F+G++ RLVELAYTRVDMV +RGEFA
Sbjct 116 LRVVVATVRSLIQPMAPGLGSLAPVDLVVGEEQSFEGLLERLVELAYTRVDMVEKRGEFA 175
Query 190 VRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAFACRELLLSE 249
VRGGILD+F PTA+HPVRV+FWGDE++E+R F+V+DQRS+P DI + A CRELLL+
Sbjct 176 VRGGILDLFGPTAQHPVRVKFWGDEVSEIRAFAVSDQRSLPG-DIPRVTAPPCRELLLTR 234
Query 250 DVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDGHALLTDQLP 309
VR +AA+LA + + ++ML KLA+GI V+GMEA++PVL LLTD +P
Sbjct 235 PVREKAAELAKTYES-----DAHLAEMLTKLADGIPVEGMEALIPVLCEGELELLTDAMP 289
Query 310 DGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQLGGSGFVELD 369
GT VL+ DPEK+R RAADL+RTG+EFLEASW+ AA G QAP+D LG S + LD
Sbjct 290 AGTHVLLTDPEKIRARAADLVRTGQEFLEASWTTAAAG---GQAPID---LGASAYRGLD 343
Query 370 QVRAAAARTGHPWWTLSQLSDES--AIELDVRAAPSARGHQRDIDEIFAMLRAHIATGGY 427
++ + A T WWT++QL+ E + V AAP+ RG +++ A LRAH A GG
Sbjct 344 EIASHAQDTKRAWWTITQLTSEDPDVYRVSVEAAPAYRG---ELERATADLRAHTAAGGT 400
Query 428 AALVAPGTGTAHRVVERLSESDTPAGMLDPG--QAPKPGVVGVLQGPLRDGVIIPGANLV 485
A LV G GTA R VE+ S +D PA + G AP PGVV V G L DG I P LV
Sbjct 401 AVLVVAGHGTAARAVEQFSAADVPASLAGDGLKGAPAPGVVTVTCGGLTDGFISPERALV 460
Query 486 VITETDLTGSRVSAAEGKR-----LAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540
V+TE DLTG A + + ++RRN VDPLAL +GD VVH+QHGIGRFVEMV+R
Sbjct 461 VLTEADLTGRGSGAGTSTKDLTTKMPSRRRNAVDPLALKSGDYVVHEQHGIGRFVEMVQR 520
Query 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600
TV GA REYL+LEY S+KRG D+L+VP D LD++S+YVGG+ P L++LGGSDW N
Sbjct 521 TVAGATREYLLLEYGSSKRG---HPGDRLFVPTDQLDEVSKYVGGELPTLNKLGGSDWKN 577
Query 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660
TK +A++AV+EIA ELV LYA RQA+PGHAF PDTPWQ ELEDAF FTET DQL AI+EV
Sbjct 578 TKARAKKAVKEIAAELVQLYAARQAAPGHAFGPDTPWQGELEDAFPFTETNDQLAAIDEV 637
Query 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720
KADME+ +PMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLA QHL TF ER
Sbjct 638 KADMERGVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLNTFHER 697
Query 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780
M FPVTIKGLSRFT+ ES +++ LA G VDIVIGTHRLLQTG+R+KDLGLV+VDEEQ
Sbjct 698 MRSFPVTIKGLSRFTNKTESDIILEQLASGEVDIVIGTHRLLQTGIRYKDLGLVIVDEEQ 757
Query 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840
RFGVEHKEHIK+LRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPE+R+P+LTYVG
Sbjct 758 RFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEDRHPILTYVGA 817
Query 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900
+DDKQ+ AA+RRELLRDGQ FYVHNRVSSI+ AA R+RELVPEARVV AHGQM ED LE
Sbjct 818 YDDKQVGAAIRRELLRDGQVFYVHNRVSSIEKAARRIRELVPEARVVTAHGQMNEDKLEK 877
Query 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960
+Q FW E+D+LVCTTIVETGLDISNANTL+VER D GL+QLHQLRGRVGR RERGYA
Sbjct 878 IIQGFWENEYDVLVCTTIVETGLDISNANTLLVERGDLLGLAQLHQLRGRVGRGRERGYA 937
Query 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020
YFLYPP+ PLTETA+DRLATIAQN ELGAGMAVA+KDLEIRGAGN+LG EQSGH+AGVGF
Sbjct 938 YFLYPPEAPLTETAHDRLATIAQNTELGAGMAVAMKDLEIRGAGNILGAEQSGHIAGVGF 997
Query 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080
DLYVRLVGEA++ +R A EE DVR+DLP+DAH+P DY+ +RLRLE
Sbjct 998 DLYVRLVGEAVDAFRRHAGAEP-----AEEEEMADVRVDLPIDAHIPHDYVPGERLRLEA 1052
Query 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140
YR++AAA + AV +EL DRYG P P RL +VAR R CR +G+T+V A T+
Sbjct 1053 YRKIAAAPDTEGLDAVREELIDRYGQPPAPVNRLLSVARFRHTCREAGVTEV-AVQGNTI 1111
Query 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPR---AGG-LGAPRIRDVELVQMVA 1196
R +PL L DS VRLKR+YP A ++A T TV VP P AGG +GAP +RD EL++
Sbjct 1112 RFAPLPLLDSQMVRLKRLYPKAVFKAVTNTVSVPKPTEGPAGGRIGAPTLRDEELLEWCT 1171
Query 1197 DLITALAGKP 1206
L+ L KP
Sbjct 1172 KLLVQLTKKP 1181
>gi|257057197|ref|YP_003135029.1| transcription-repair coupling factor Mfd [Saccharomonospora viridis
DSM 43017]
gi|256587069|gb|ACU98202.1| transcription-repair coupling factor Mfd [Saccharomonospora viridis
DSM 43017]
Length=1199
Score = 1377 bits (3564), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 746/1177 (64%), Positives = 893/1177 (76%), Gaps = 43/1177 (3%)
Query 46 ASARLLVASALARQG---PLLVVTATGREADDLAAELRGVFGDA-VALLPSWETLPHERL 101
A+ +L+VA+ A +G P+L VT TGR+A++L A LR + G+ VA PSWETLPHERL
Sbjct 45 ATHQLVVAALAADRGAGRPVLAVTPTGRQAEELTAALRSLLGENLVADFPSWETLPHERL 104
Query 102 SPGVDTVGTRLMALRRLAHPDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDE 161
SP DTVG RL LRRLA PD L VVV +VRSL+QPM P LG + P+ L VG E
Sbjct 105 SPRADTVGKRLEVLRRLAQPDHGGLR----VVVATVRSLIQPMAPGLGGLHPVELRVGQE 160
Query 162 SPFDGVVARLVELAYTRVDMVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMF 221
S F+ V+ +LVELAYTRVDMV +RGEFAVRGGILDIF PTAEHP R+EFWGDE++E+R F
Sbjct 161 SDFEAVLDQLVELAYTRVDMVEKRGEFAVRGGILDIFGPTAEHPHRIEFWGDEVSEIRAF 220
Query 222 SVADQRSIPEIDIHTLVAFACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLA 281
+V+DQRS+P ++ ++A CRE+LL+ DV+ARAA+LA H S+ML KLA
Sbjct 221 AVSDQRSLPG-EVTEVIAPPCREILLTPDVKARAAELARTHAD-----NAQLSEMLTKLA 274
Query 282 EGIAVDGMEAVLPVLWSDGHALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASW 341
+G+ +GMEA++PVL LLTD LP+GT V++ +PEK R RAADL+RTG+EFLEASW
Sbjct 275 DGVPCEGMEALIPVLCEGELQLLTDALPEGTHVVLIEPEKSRARAADLVRTGQEFLEASW 334
Query 342 SVAALGTAENQAPVDVEQLGGSGFVELDQVRAAAARTGHPWWTLSQLSDES-AIELDVRA 400
AA G +AP+D LG S + +LD+VRA A T WWTLSQL+ ES A + + +
Sbjct 335 MSAADG---GEAPLD---LGASAYRDLDEVRAHATETNRCWWTLSQLTSESGAHHVAIDS 388
Query 401 APSARGHQRDIDEIFAMLRAHIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPG-- 458
AP+ RG +++ + LRAH A+GG A +V G GTA R V++LS ++ PA + G
Sbjct 389 APAYRG---ELERVATDLRAHTASGGAAVVVVAGAGTAKRAVDQLSGAEVPATLATEGLT 445
Query 459 QAPKPGVVGVLQGPLRDGVIIPGANLVVITETDLTGSRVSAAEGK-----RLAAKRRNIV 513
+ PKPGVV V G + DG + PG+ LVV++E D+TG +A ++ ++RRN V
Sbjct 446 EEPKPGVVTVTCGGISDGFVAPGSALVVLSEADITGRGATAGRSNVDLNTKMPSRRRNAV 505
Query 514 DPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASAKRGGGAKNTDKLYVPM 573
DPLAL +GD VVHDQHGIGRFVEMV RTVGGA REYLV+EYA +KRG D+L+VP
Sbjct 506 DPLALKSGDYVVHDQHGIGRFVEMVRRTVGGATREYLVIEYAPSKRG---HPGDRLFVPT 562
Query 574 DSLDQLSRYVGGQAPALSRLGGSDWANTKTKARRAVREIAGELVSLYAKRQASPGHAFSP 633
D LD++SRYVGG+ P L+++GG+DW TK +AR+AV+EIA ELV LYA RQA+PGHAFSP
Sbjct 563 DQLDEVSRYVGGETPTLNKMGGADWKKTKARARKAVKEIAAELVQLYAARQAAPGHAFSP 622
Query 634 DTPWQAELEDAFGFTETVDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKA 693
DTPWQ ELEDAF FTET DQL AI+EVK DME+ +PMDRVICGDVGYGKTEIAVRAAFKA
Sbjct 623 DTPWQRELEDAFPFTETADQLAAIDEVKRDMERDVPMDRVICGDVGYGKTEIAVRAAFKA 682
Query 694 VQDGKQVAVLVPTTLLADQHLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVD 753
VQDGKQV VLVPTT+LA QHL TF ERM FPVTIKGLSRFTD E+ VI+GLADG VD
Sbjct 683 VQDGKQVVVLVPTTILAQQHLATFSERMRSFPVTIKGLSRFTDPHEAEQVINGLADGEVD 742
Query 754 IVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEM 813
IVIGTHRLLQ+ VR+KDLGLV+VDEEQRFGVEHKEHIK+LRTHVDVLTMSATPIPRTLEM
Sbjct 743 IVIGTHRLLQSNVRYKDLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEM 802
Query 814 SLAGIREMSTILTPPEERYPVLTYVGPHDDKQIAAALRRELLRDGQAFYVHNRVSSIDAA 873
S+AGIREMSTILTPPE+R+P+LTYVG +DDKQ+AAA+RRELLRDGQ FYVHNRVSSI+ A
Sbjct 803 SMAGIREMSTILTPPEDRHPILTYVGAYDDKQVAAAIRRELLRDGQVFYVHNRVSSIERA 862
Query 874 AARVRELVPEARVVVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIV 933
A R+RELVPEARVV AHGQM E LE +Q FW RE+D+LVCTTIVETGLDISNANTLIV
Sbjct 863 ARRLRELVPEARVVTAHGQMNEHRLEQIIQGFWEREYDVLVCTTIVETGLDISNANTLIV 922
Query 934 ERADTFGLSQLHQLRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAV 993
E AD GL+QLHQLRGRVGR RERGYAYFLYP PLTETA+DRLATIAQN ELGAGMAV
Sbjct 923 EHADQLGLAQLHQLRGRVGRGRERGYAYFLYPADKPLTETAHDRLATIAQNTELGAGMAV 982
Query 994 ALKDLEIRGAGNVLGIEQSGHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEP 1053
A+KDLEIRGAGN+LG EQSGH+AGVGFDLYVRLVGEA+E +R R A G+
Sbjct 983 AMKDLEIRGAGNILGAEQSGHIAGVGFDLYVRLVGEAVEAFR---RHAGAGEPEEEPTP- 1038
Query 1054 KDVRIDLPVDAHLPPDYIASDRLRLEGYRRLAAASSDREVAAVVDELTDRYGALPEPARR 1113
+VR+DLPVDAH+P DY+ +RLRLE YR++AAA + AV +EL DRYG LP P R
Sbjct 1039 TEVRVDLPVDAHIPHDYVPGERLRLEAYRKIAAAPDAEGLDAVREELVDRYGKLPAPVER 1098
Query 1114 LAAVARLRLLCRGSGITDVTAASAATVRLSPLTLPDSAQVRLKRMYPGAHYRATTATVQV 1173
L AVA R +CR +G+T+VT +R +PL L DS VRLKR+YP A ++A T TV V
Sbjct 1099 LLAVAAFRQVCREAGVTEVT-LQGNNIRFTPLQLADSQLVRLKRLYPRAVFKAVTNTVSV 1157
Query 1174 PIPR---AGG-LGAPRIRDVELVQMVADLITALAGKP 1206
P P AGG +GAP +RD L+ LI +L P
Sbjct 1158 PRPTEGPAGGRIGAPVLRDEPLLDWCTTLIRSLTRTP 1194
>gi|25027590|ref|NP_737644.1| putative transcription-repair coupling factor [Corynebacterium
efficiens YS-314]
gi|23492872|dbj|BAC17844.1| putative transcription-repair coupling factor [Corynebacterium
efficiens YS-314]
Length=1218
Score = 1377 bits (3563), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 710/1213 (59%), Positives = 879/1213 (73%), Gaps = 50/1213 (4%)
Query 13 IAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQGPLLVVTATGREA 72
+AGL+++A + P + ++ G R L L AR V LA P+LVVTATGREA
Sbjct 5 LAGLLKVAATDPKLKGMISNVGAR--NLHLTGVDQARPWVIGTLAHHAPVLVVTATGREA 62
Query 73 DDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAHPDDAQLGPPLGV 132
+DL AELR + GD VA PSWETLPHERLSPGVD VG R L +L DDA+ +
Sbjct 63 EDLTAELRAMMGDKVAWFPSWETLPHERLSPGVDIVGRRAQVLNKL---DDAK------I 113
Query 133 VVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVDMVGRRGEFAVRG 192
+VT+ R+ QP+ + +PL L G E+ F + LV AY VDMV +RGEFA RG
Sbjct 114 IVTAARAFCQPVLKEAAGRQPLILREGAEADFSALGEELVFRAYKNVDMVAKRGEFATRG 173
Query 193 GILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAFACRELLLSEDVR 252
GILD+F T ++PVR+EFWGDE++++R FSVADQR+IPE+ + + + RELL++++V
Sbjct 174 GILDVFPTTLDYPVRIEFWGDEVSDIRQFSVADQRTIPEMTLDEIEIYPARELLITDEVA 233
Query 253 ARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDGHALLTDQLPDGT 312
ARAA+L +HP + V +ML+++++ VDGMEA++P L L + +P+ T
Sbjct 234 ARAAELMVKHPGNPTLV-----EMLSRISDRTDVDGMEALIPALVDTPMVPLLELMPENT 288
Query 313 PVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVE--QLGGSGFVELDQ 370
++V PEKVRTR ADL T EF+ A W AA+G PV V+ L S + D
Sbjct 289 HIMVIAPEKVRTRIADLEATDAEFMAAGWEAAAMGA---DGPVSVKGLDLEASSYRSYDS 345
Query 371 VRAAAARTGHPWWTLS-----QLSDESAIELDVRAAPSARGHQRDIDEIFAMLRAHIATG 425
+ +A+ + PWWT + + SD + LD P+ RG I+E+ A+L AH G
Sbjct 346 LEVSASTSNLPWWTFAPTGMFEASDAETLPLDFEPGPTPRGDLEAINEMMALLLAHTKAG 405
Query 426 GYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIPGAN-- 483
G AA +AP G R+VER +E P + PG P PG V + G++ P
Sbjct 406 GRAAFIAPSEGAIRRMVERFAEQGIPTHVATPGWEPSPGQVTLYHALSHAGLVFPKVRKH 465
Query 484 -------LVVITETDLTGSRVSAAEG-KRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFV 535
LVVITETDLTG+RV G KR A+RRN VDPLALT GDLVVH+ HGIGRF+
Sbjct 466 RDADALPLVVITETDLTGNRVGDIAGAKRRPARRRNKVDPLALTPGDLVVHETHGIGRFI 525
Query 536 EMVERTVGG----ARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALS 591
+M ERT+ +RREY+VLEYA +KRG + D+LYVPMDSLD LSRYVGG+ P LS
Sbjct 526 KMTERTISTGDETSRREYIVLEYAPSKRG---QPGDQLYVPMDSLDMLSRYVGGEKPTLS 582
Query 592 RLGGSDWANTKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETV 651
++GGSDW NTK KAR AVREIAGELV LYAKRQA+PGHAF PDTPWQ E+ED F + ET
Sbjct 583 KMGGSDWKNTKKKARAAVREIAGELVELYAKRQAAPGHAFGPDTPWQKEMEDNFPYVETE 642
Query 652 DQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAD 711
DQ+ AI+ VK DMEKP+PMDRVI GDVGYGKTE+AVRAAFKAVQDGKQVAVLVPTTLLA
Sbjct 643 DQMLAIDAVKEDMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQ 702
Query 712 QHLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDL 771
QH TF ERM+GFPVTI GLSRFT AES+ + GLA G VDIV+GTHRLLQTGV+WK+L
Sbjct 703 QHKSTFEERMAGFPVTIHGLSRFTSTAESKETLAGLASGEVDIVVGTHRLLQTGVQWKNL 762
Query 772 GLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEER 831
GLV+VDEEQRFGVEHKEHIK+LR+HVDVLTMSATPIPRTLEMS+AGIREM+T+LTPPE+R
Sbjct 763 GLVIVDEEQRFGVEHKEHIKALRSHVDVLTMSATPIPRTLEMSMAGIREMTTMLTPPEDR 822
Query 832 YPVLTYVGPHDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHG 891
+P+LTYVGP++DKQ+AA++RRELLRDGQ F++HN+V+ I+ A +R+LVPEARVVVAHG
Sbjct 823 HPILTYVGPYEDKQVAASIRRELLRDGQVFFIHNKVADIEKKARELRDLVPEARVVVAHG 882
Query 892 QMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRV 951
QM E+LLE TVQ FW+RE+D+LVCTTIVETGLDI+NANTLIVE A GLSQLHQLRGRV
Sbjct 883 QMSEELLEQTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRV 942
Query 952 GRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQ 1011
GRSRERGYAYFLYP LTET+YDRLATIAQNN+LGAGMAVA+KDLE+RGAGNVLG EQ
Sbjct 943 GRSRERGYAYFLYPKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQ 1002
Query 1012 SGHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVR-TAEEPKDVRIDLPVDAHLPPDY 1070
SGH+AGVGFDLYVRLVGEA+E AYRA ADG++V T + P +VR+DLPVDAH+P +Y
Sbjct 1003 SGHIAGVGFDLYVRLVGEAVE----AYRALADGKSVDGTVKGPTEVRVDLPVDAHIPENY 1058
Query 1071 IASDRLRLEGYRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGIT 1130
I S+RLRLE YR+LA + S+ ++ V+E+ DRYG +PE RL AVARLR R +G+T
Sbjct 1059 INSERLRLEIYRKLATSESESDLQLAVEEMEDRYGPIPEEVSRLLAVARLRHQMRAAGLT 1118
Query 1131 DVTAASAATVRLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAG-GLGAPRIRDV 1189
DV A +++ P+ L DS QVRLKR++P A YRA +QV P+AG + P +RDV
Sbjct 1119 DV-AVQGTRIKIHPVELKDSQQVRLKRLFPSATYRAAAKAIQVSFPKAGRNVTDPLLRDV 1177
Query 1190 ELVQMVADLITAL 1202
+L+Q V+D I +
Sbjct 1178 DLLQWVSDFIAKM 1190
>gi|259507006|ref|ZP_05749906.1| transcription-repair coupling factor [Corynebacterium efficiens
YS-314]
gi|259165458|gb|EEW50012.1| transcription-repair coupling factor [Corynebacterium efficiens
YS-314]
Length=1215
Score = 1375 bits (3560), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 710/1213 (59%), Positives = 879/1213 (73%), Gaps = 50/1213 (4%)
Query 13 IAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQGPLLVVTATGREA 72
+AGL+++A + P + ++ G R L L AR V LA P+LVVTATGREA
Sbjct 2 LAGLLKVAATDPKLKGMISNVGAR--NLHLTGVDQARPWVIGTLAHHAPVLVVTATGREA 59
Query 73 DDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAHPDDAQLGPPLGV 132
+DL AELR + GD VA PSWETLPHERLSPGVD VG R L +L DDA+ +
Sbjct 60 EDLTAELRAMMGDKVAWFPSWETLPHERLSPGVDIVGRRAQVLNKL---DDAK------I 110
Query 133 VVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVDMVGRRGEFAVRG 192
+VT+ R+ QP+ + +PL L G E+ F + LV AY VDMV +RGEFA RG
Sbjct 111 IVTAARAFCQPVLKEAAGRQPLILREGAEADFSALGEELVFRAYKNVDMVAKRGEFATRG 170
Query 193 GILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAFACRELLLSEDVR 252
GILD+F T ++PVR+EFWGDE++++R FSVADQR+IPE+ + + + RELL++++V
Sbjct 171 GILDVFPTTLDYPVRIEFWGDEVSDIRQFSVADQRTIPEMTLDEIEIYPARELLITDEVA 230
Query 253 ARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDGHALLTDQLPDGT 312
ARAA+L +HP + V +ML+++++ VDGMEA++P L L + +P+ T
Sbjct 231 ARAAELMVKHPGNPTLV-----EMLSRISDRTDVDGMEALIPALVDTPMVPLLELMPENT 285
Query 313 PVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVE--QLGGSGFVELDQ 370
++V PEKVRTR ADL T EF+ A W AA+G PV V+ L S + D
Sbjct 286 HIMVIAPEKVRTRIADLEATDAEFMAAGWEAAAMGA---DGPVSVKGLDLEASSYRSYDS 342
Query 371 VRAAAARTGHPWWTLS-----QLSDESAIELDVRAAPSARGHQRDIDEIFAMLRAHIATG 425
+ +A+ + PWWT + + SD + LD P+ RG I+E+ A+L AH G
Sbjct 343 LEVSASTSNLPWWTFAPTGMFEASDAETLPLDFEPGPTPRGDLEAINEMMALLLAHTKAG 402
Query 426 GYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIPGAN-- 483
G AA +AP G R+VER +E P + PG P PG V + G++ P
Sbjct 403 GRAAFIAPSEGAIRRMVERFAEQGIPTHVATPGWEPSPGQVTLYHALSHAGLVFPKVRKH 462
Query 484 -------LVVITETDLTGSRVSAAEG-KRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFV 535
LVVITETDLTG+RV G KR A+RRN VDPLALT GDLVVH+ HGIGRF+
Sbjct 463 RDADALPLVVITETDLTGNRVGDIAGAKRRPARRRNKVDPLALTPGDLVVHETHGIGRFI 522
Query 536 EMVERTVGG----ARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALS 591
+M ERT+ +RREY+VLEYA +KRG + D+LYVPMDSLD LSRYVGG+ P LS
Sbjct 523 KMTERTISTGDETSRREYIVLEYAPSKRG---QPGDQLYVPMDSLDMLSRYVGGEKPTLS 579
Query 592 RLGGSDWANTKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETV 651
++GGSDW NTK KAR AVREIAGELV LYAKRQA+PGHAF PDTPWQ E+ED F + ET
Sbjct 580 KMGGSDWKNTKKKARAAVREIAGELVELYAKRQAAPGHAFGPDTPWQKEMEDNFPYVETE 639
Query 652 DQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAD 711
DQ+ AI+ VK DMEKP+PMDRVI GDVGYGKTE+AVRAAFKAVQDGKQVAVLVPTTLLA
Sbjct 640 DQMLAIDAVKEDMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQ 699
Query 712 QHLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDL 771
QH TF ERM+GFPVTI GLSRFT AES+ + GLA G VDIV+GTHRLLQTGV+WK+L
Sbjct 700 QHKSTFEERMAGFPVTIHGLSRFTSTAESKETLAGLASGEVDIVVGTHRLLQTGVQWKNL 759
Query 772 GLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEER 831
GLV+VDEEQRFGVEHKEHIK+LR+HVDVLTMSATPIPRTLEMS+AGIREM+T+LTPPE+R
Sbjct 760 GLVIVDEEQRFGVEHKEHIKALRSHVDVLTMSATPIPRTLEMSMAGIREMTTMLTPPEDR 819
Query 832 YPVLTYVGPHDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHG 891
+P+LTYVGP++DKQ+AA++RRELLRDGQ F++HN+V+ I+ A +R+LVPEARVVVAHG
Sbjct 820 HPILTYVGPYEDKQVAASIRRELLRDGQVFFIHNKVADIEKKARELRDLVPEARVVVAHG 879
Query 892 QMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRV 951
QM E+LLE TVQ FW+RE+D+LVCTTIVETGLDI+NANTLIVE A GLSQLHQLRGRV
Sbjct 880 QMSEELLEQTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRV 939
Query 952 GRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQ 1011
GRSRERGYAYFLYP LTET+YDRLATIAQNN+LGAGMAVA+KDLE+RGAGNVLG EQ
Sbjct 940 GRSRERGYAYFLYPKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQ 999
Query 1012 SGHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVR-TAEEPKDVRIDLPVDAHLPPDY 1070
SGH+AGVGFDLYVRLVGEA+E AYRA ADG++V T + P +VR+DLPVDAH+P +Y
Sbjct 1000 SGHIAGVGFDLYVRLVGEAVE----AYRALADGKSVDGTVKGPTEVRVDLPVDAHIPENY 1055
Query 1071 IASDRLRLEGYRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGIT 1130
I S+RLRLE YR+LA + S+ ++ V+E+ DRYG +PE RL AVARLR R +G+T
Sbjct 1056 INSERLRLEIYRKLATSESESDLQLAVEEMEDRYGPIPEEVSRLLAVARLRHQMRAAGLT 1115
Query 1131 DVTAASAATVRLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAG-GLGAPRIRDV 1189
DV A +++ P+ L DS QVRLKR++P A YRA +QV P+AG + P +RDV
Sbjct 1116 DV-AVQGTRIKIHPVELKDSQQVRLKRLFPSATYRAAAKAIQVSFPKAGRNVTDPLLRDV 1174
Query 1190 ELVQMVADLITAL 1202
+L+Q V+D I +
Sbjct 1175 DLLQWVSDFIAKM 1187
Lambda K H
0.318 0.135 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 3143180842264
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40