BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1028A

Length=30
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|50953769|ref|YP_061208.1|  hypothetical protein MT1057.1 [Myco...  58.2    4e-07
gi|31792220|ref|NP_854713.1|  membrane protein kdpF [Mycobacteriu...  58.2    4e-07
gi|117164413|emb|CAJ87958.1|  putative small membrane protein [St...  40.0    0.11 
gi|289770673|ref|ZP_06530051.1|  predicted protein [Streptomyces ...  39.3    0.17 
gi|254386379|ref|ZP_05001685.1|  hypothetical protein SSAG_06012 ...  39.3    0.17 
gi|291454272|ref|ZP_06593662.1|  predicted protein [Streptomyces ...  39.3    0.18 
gi|120405708|ref|YP_955537.1|  hypothetical protein Mvan_4758 [My...  38.9    0.23 
gi|294633098|ref|ZP_06711657.1|  K+-transporting ATPase, F subuni...  38.1    0.47 
gi|21222132|ref|NP_627911.1|  small membrane protein [Streptomyce...  37.0    0.96 
gi|118472067|ref|YP_889632.1|  hypothetical protein MSMEG_5391 [M...  36.6    1.3  
gi|254380489|ref|ZP_04995855.1|  hypothetical protein SSAG_00157 ...  35.4    3.2  


>gi|50953769|ref|YP_061208.1| hypothetical protein MT1057.1 [Mycobacterium tuberculosis CDC1551]
 gi|167968529|ref|ZP_02550806.1| hypothetical protein MtubH3_11036 [Mycobacterium tuberculosis 
H37Ra]
 gi|254550014|ref|ZP_05140461.1| hypothetical protein Mtube_06073 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 13 more sequence titles
 Length=32

 Score = 58.2 bits (139),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 30/30 (100%), Positives = 30/30 (100%), Gaps = 0/30 (0%)

Query  1   MTTVDNIVGLVIAVALMAFLFAALLFPEKF  30
           MTTVDNIVGLVIAVALMAFLFAALLFPEKF
Sbjct  3   MTTVDNIVGLVIAVALMAFLFAALLFPEKF  32


>gi|31792220|ref|NP_854713.1| membrane protein kdpF [Mycobacterium bovis AF2122/97]
 gi|57116812|ref|YP_177636.1| membrane protein kdpF [Mycobacterium tuberculosis H37Rv]
 gi|121636958|ref|YP_977181.1| putative membrane protein kdpF [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 50 more sequence titles
 Length=30

 Score = 58.2 bits (139),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 30/30 (100%), Positives = 30/30 (100%), Gaps = 0/30 (0%)

Query  1   MTTVDNIVGLVIAVALMAFLFAALLFPEKF  30
           MTTVDNIVGLVIAVALMAFLFAALLFPEKF
Sbjct  1   MTTVDNIVGLVIAVALMAFLFAALLFPEKF  30


>gi|117164413|emb|CAJ87958.1| putative small membrane protein [Streptomyces ambofaciens ATCC 
23877]
Length=29

 Score = 40.0 bits (92),  Expect = 0.11, Method: Compositional matrix adjust.
 Identities = 16/28 (58%), Positives = 25/28 (90%), Gaps = 0/28 (0%)

Query  3   TVDNIVGLVIAVALMAFLFAALLFPEKF  30
           TV+NIVGL++AV+L+ +L  AL++PE+F
Sbjct  2   TVENIVGLIVAVSLLGYLALALIYPERF  29


>gi|289770673|ref|ZP_06530051.1| predicted protein [Streptomyces lividans TK24]
 gi|289700872|gb|EFD68301.1| predicted protein [Streptomyces lividans TK24]
Length=94

 Score = 39.3 bits (90),  Expect = 0.17, Method: Composition-based stats.
 Identities = 15/28 (54%), Positives = 23/28 (83%), Gaps = 0/28 (0%)

Query  3   TVDNIVGLVIAVALMAFLFAALLFPEKF  30
           T +N+VGL++AVAL+ +L  AL+ PE+F
Sbjct  67  TAENVVGLIVAVALLGYLVLALIHPERF  94


>gi|254386379|ref|ZP_05001685.1| hypothetical protein SSAG_06012 [Streptomyces sp. Mg1]
 gi|194345230|gb|EDX26196.1| hypothetical protein SSAG_06012 [Streptomyces sp. Mg1]
Length=74

 Score = 39.3 bits (90),  Expect = 0.17, Method: Compositional matrix adjust.
 Identities = 13/28 (47%), Positives = 25/28 (90%), Gaps = 0/28 (0%)

Query  3   TVDNIVGLVIAVALMAFLFAALLFPEKF  30
           +++NI+GL++AV+L+ +L  AL++PE+F
Sbjct  47  SIENIIGLLVAVSLLGYLILALVYPERF  74


>gi|291454272|ref|ZP_06593662.1| predicted protein [Streptomyces albus J1074]
 gi|291357221|gb|EFE84123.1| predicted protein [Streptomyces albus J1074]
Length=86

 Score = 39.3 bits (90),  Expect = 0.18, Method: Compositional matrix adjust.
 Identities = 18/28 (65%), Positives = 23/28 (83%), Gaps = 0/28 (0%)

Query  3   TVDNIVGLVIAVALMAFLFAALLFPEKF  30
           TV+NIVGLV+A AL+ +L  ALLFP +F
Sbjct  59  TVENIVGLVVAAALVGYLVLALLFPGRF  86


>gi|120405708|ref|YP_955537.1| hypothetical protein Mvan_4758 [Mycobacterium vanbaalenii PYR-1]
 gi|119958526|gb|ABM15531.1| hypothetical protein Mvan_4758 [Mycobacterium vanbaalenii PYR-1]
Length=96

 Score = 38.9 bits (89),  Expect = 0.23, Method: Composition-based stats.
 Identities = 15/29 (52%), Positives = 21/29 (73%), Gaps = 0/29 (0%)

Query  2   TTVDNIVGLVIAVALMAFLFAALLFPEKF  30
           +   N++GL +A  +  FLFAALLFPE+F
Sbjct  68  SVTQNLIGLALAALIAVFLFAALLFPERF  96


>gi|294633098|ref|ZP_06711657.1| K+-transporting ATPase, F subunit [Streptomyces sp. e14]
 gi|292830879|gb|EFF89229.1| K+-transporting ATPase, F subunit [Streptomyces sp. e14]
Length=75

 Score = 38.1 bits (87),  Expect = 0.47, Method: Compositional matrix adjust.
 Identities = 16/28 (58%), Positives = 22/28 (79%), Gaps = 0/28 (0%)

Query  3   TVDNIVGLVIAVALMAFLFAALLFPEKF  30
           T +N VGL+ AVAL+ +L  AL+FPE+F
Sbjct  48  TAENTVGLIAAVALLGYLVLALIFPERF  75


>gi|21222132|ref|NP_627911.1| small membrane protein [Streptomyces coelicolor A3(2)]
 gi|5019369|emb|CAB44422.1| putative small membrane protein [Streptomyces coelicolor A3(2)]
Length=29

 Score = 37.0 bits (84),  Expect = 0.96, Method: Compositional matrix adjust.
 Identities = 15/28 (54%), Positives = 23/28 (83%), Gaps = 0/28 (0%)

Query  3   TVDNIVGLVIAVALMAFLFAALLFPEKF  30
           T +N+VGL++AVAL+ +L  AL+ PE+F
Sbjct  2   TAENVVGLIVAVALLGYLVLALIRPERF  29


>gi|118472067|ref|YP_889632.1| hypothetical protein MSMEG_5391 [Mycobacterium smegmatis str. 
MC2 155]
 gi|118173354|gb|ABK74250.1| hypothetical protein MSMEG_5391 [Mycobacterium smegmatis str. 
MC2 155]
Length=69

 Score = 36.6 bits (83),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 15/27 (56%), Positives = 23/27 (86%), Gaps = 0/27 (0%)

Query  4   VDNIVGLVIAVALMAFLFAALLFPEKF  30
           ++N+VGL++AV +  F+ AALLFPE+F
Sbjct  43  IENVVGLILAVLIAVFIGAALLFPERF  69


>gi|254380489|ref|ZP_04995855.1| hypothetical protein SSAG_00157 [Streptomyces sp. Mg1]
 gi|194339400|gb|EDX20366.1| hypothetical protein SSAG_00157 [Streptomyces sp. Mg1]
Length=36

 Score = 35.4 bits (80),  Expect = 3.2, Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 22/28 (79%), Gaps = 0/28 (0%)

Query  3   TVDNIVGLVIAVALMAFLFAALLFPEKF  30
           + + IVG+++AV+L+ +L  AL FPEKF
Sbjct  9   STETIVGIIVAVSLVGYLVLALFFPEKF  36



Lambda     K      H
   0.339    0.148    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128592069950


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40