BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1035c

Length=228
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15608175|ref|NP_215551.1|  transposase [Mycobacterium tubercul...   434    4e-120
gi|289761172|ref|ZP_06520550.1|  LOW QUALITY PROTEIN: transposase...   434    4e-120
gi|289442458|ref|ZP_06432202.1|  transposase [Mycobacterium tuber...   432    2e-119
gi|339297677|gb|AEJ49787.1|  transposase [Mycobacterium tuberculo...   431    4e-119
gi|167968536|ref|ZP_02550813.1|  transposase [Mycobacterium tuber...   417    6e-115
gi|340626046|ref|YP_004744498.1|  putative transposase (fragment)...   331    6e-89 
gi|111025277|ref|YP_707697.1|  transposase [Rhodococcus jostii RH...   278    3e-73 
gi|111025371|ref|YP_707791.1|  transposase [Rhodococcus jostii RH...   277    1e-72 
gi|111026321|ref|YP_708604.1|  IS5 family transposase [Rhodococcu...   265    4e-69 
gi|258652805|ref|YP_003201961.1|  transposase IS4 family protein ...   187    1e-45 
gi|167966937|ref|ZP_02549214.1|  transposase [Mycobacterium tuber...   108    6e-22 
gi|169830876|ref|YP_001716858.1|  putative methyl-accepting chemo...   108    7e-22 
gi|15610522|ref|NP_217903.1|  transposase [Mycobacterium tubercul...   108    8e-22 
gi|289763567|ref|ZP_06522945.1|  transposase [Mycobacterium tuber...   108    9e-22 
gi|289571621|ref|ZP_06451848.1|  transposase [Mycobacterium tuber...   107    9e-22 
gi|307086165|ref|ZP_07495278.1|  hypothetical protein TMLG_02974 ...   106    3e-21 
gi|83590979|ref|YP_430988.1|  IS5 family transposase [Moorella th...  94.7    9e-18 
gi|308406141|ref|ZP_07495279.2|  transposase [Mycobacterium tuber...  91.7    7e-17 
gi|169830618|ref|YP_001716600.1|  hypothetical protein Daud_0420 ...  81.6    8e-14 
gi|253577715|ref|ZP_04855012.1|  transposase [Paenibacillus sp. o...  79.7    3e-13 
gi|167966936|ref|ZP_02549213.1|  transposase [Mycobacterium tuber...  70.5    2e-10 
gi|147677689|ref|YP_001211904.1|  hypothetical protein PTH_1354 [...  62.8    4e-08 
gi|15610523|ref|NP_217904.1|  transposase [Mycobacterium tubercul...  56.6    3e-06 
gi|289449083|ref|ZP_06438827.1|  transposase [Mycobacterium tuber...  56.2    3e-06 
gi|298251049|ref|ZP_06974853.1|  transposase IS4 family protein [...  47.4    0.001 
gi|298248375|ref|ZP_06972180.1|  transposase IS4 family protein [...  47.0    0.002 
gi|20804074|emb|CAD31277.1|  PUTATIVE TRANSPOSASE FOR INSERTION E...  46.2    0.004 
gi|85858589|ref|YP_460791.1|  transposase [Syntrophus aciditrophi...  46.2    0.004 
gi|298241044|ref|ZP_06964851.1|  transposase IS4 family protein [...  45.8    0.005 
gi|298248369|ref|ZP_06972174.1|  transposase IS4 family protein [...  45.8    0.005 
gi|78048272|ref|YP_364447.1|  IS1478 transposase [Xanthomonas cam...  44.7    0.010 
gi|294624396|ref|ZP_06703089.1|  IS1478 transposase [Xanthomonas ...  44.3    0.014 
gi|2496742|sp|P55642.1|Y4RI_RHISN  RecName: Full=Uncharacterized ...  43.1    0.032 
gi|188574452|ref|YP_001911381.1|  ISXoo4 transposase [Xanthomonas...  42.4    0.059 
gi|116253888|ref|YP_769726.1|  transposon-related protein [Rhizob...  42.0    0.067 
gi|124515153|gb|EAY56664.1|  probable transposase [Leptospirillum...  42.0    0.070 
gi|124514920|gb|EAY56431.1|  probable transposase [Leptospirillum...  42.0    0.077 
gi|124514574|gb|EAY56086.1|  probable transposase [Leptospirillum...  41.6    0.084 
gi|84622499|ref|YP_449871.1|  ISXoo4 transposase [Xanthomonas ory...  41.6    0.087 
gi|188579210|ref|YP_001916139.1|  transposase [Xanthomonas oryzae...  41.6    0.096 
gi|188577880|ref|YP_001914809.1|  transposase [Xanthomonas oryzae...  41.2    0.10  
gi|58583054|ref|YP_202070.1|  IS1478 transposase [Xanthomonas ory...  41.2    0.11  
gi|124515502|gb|EAY57012.1|  probable transposase [Leptospirillum...  41.2    0.11  
gi|206603356|gb|EDZ39836.1|  Transposase [Leptospirillum sp. Grou...  41.2    0.12  
gi|124515920|gb|EAY57429.1|  putative transposase [Leptospirillum...  41.2    0.12  
gi|124516354|gb|EAY57862.1|  transposase [Leptospirillum rubarum]     41.2    0.12  
gi|188577561|ref|YP_001914490.1|  transposase [Xanthomonas oryzae...  41.2    0.12  
gi|84621823|ref|YP_449195.1|  ISXoo4 transposase [Xanthomonas ory...  41.2    0.12  
gi|166710019|ref|ZP_02241226.1|  ISXoo4 transposase [Xanthomonas ...  41.2    0.12  
gi|84623491|ref|YP_450863.1|  ISXoo4 transposase [Xanthomonas ory...  41.2    0.13  


>gi|15608175|ref|NP_215551.1| transposase [Mycobacterium tuberculosis H37Rv]
 gi|15840465|ref|NP_335502.1| hypothetical protein MT1065 [Mycobacterium tuberculosis CDC1551]
 gi|31792227|ref|NP_854720.1| transposase [Mycobacterium bovis AF2122/97]
 64 more sequence titles
 
gi|121636965|ref|YP_977188.1| putative transposase [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148660818|ref|YP_001282341.1| putative transposase [Mycobacterium tuberculosis H37Ra]
 gi|148822244|ref|YP_001286998.1| transposase [Mycobacterium tuberculosis F11]
 gi|224989437|ref|YP_002644124.1| putative transposase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253799933|ref|YP_003032934.1| transposase [Mycobacterium tuberculosis KZN 1435]
 gi|254231327|ref|ZP_04924654.1| hypothetical protein TBCG_01023 [Mycobacterium tuberculosis C]
 gi|254363950|ref|ZP_04979996.1| transposase [Mycobacterium tuberculosis str. Haarlem]
 gi|254550020|ref|ZP_05140467.1| transposase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|289446616|ref|ZP_06436360.1| transposase [Mycobacterium tuberculosis CPHL_A]
 gi|289555182|ref|ZP_06444392.1| transposase [Mycobacterium tuberculosis KZN 605]
 gi|289573675|ref|ZP_06453902.1| transposase [Mycobacterium tuberculosis K85]
 gi|289744773|ref|ZP_06504151.1| transposase [Mycobacterium tuberculosis 02_1987]
 gi|289753097|ref|ZP_06512475.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289757120|ref|ZP_06516498.1| transposase [Mycobacterium tuberculosis T85]
 gi|294995224|ref|ZP_06800915.1| transposase [Mycobacterium tuberculosis 210]
 gi|297633564|ref|ZP_06951344.1| transposase [Mycobacterium tuberculosis KZN 4207]
 gi|298524533|ref|ZP_07011942.1| transposase [Mycobacterium tuberculosis 94_M4241A]
 gi|306775172|ref|ZP_07413509.1| transposase [Mycobacterium tuberculosis SUMu001]
 gi|306788088|ref|ZP_07426410.1| transposase [Mycobacterium tuberculosis SUMu004]
 gi|306806889|ref|ZP_07443557.1| transposase [Mycobacterium tuberculosis SUMu007]
 gi|306967089|ref|ZP_07479750.1| transposase [Mycobacterium tuberculosis SUMu009]
 gi|306971279|ref|ZP_07483940.1| transposase [Mycobacterium tuberculosis SUMu010]
 gi|307079008|ref|ZP_07488178.1| transposase [Mycobacterium tuberculosis SUMu011]
 gi|308370087|ref|ZP_07666861.1| transposase [Mycobacterium tuberculosis SUMu002]
 gi|308370586|ref|ZP_07666972.1| transposase [Mycobacterium tuberculosis SUMu003]
 gi|308373007|ref|ZP_07667492.1| transposase [Mycobacterium tuberculosis SUMu005]
 gi|308374177|ref|ZP_07667728.1| transposase [Mycobacterium tuberculosis SUMu006]
 gi|308376591|ref|ZP_07668305.1| transposase [Mycobacterium tuberculosis SUMu008]
 gi|339631097|ref|YP_004722739.1| transposase [Mycobacterium africanum GM041182]
 gi|1869993|emb|CAB06844.1| PROBABLE TRANSPOSASE (FRAGMENT) [Mycobacterium tuberculosis H37Rv]
 gi|13880638|gb|AAK45316.1| hypothetical protein MT1065 [Mycobacterium tuberculosis CDC1551]
 gi|31617815|emb|CAD93924.1| PROBABLE TRANSPOSASE (FRAGMENT) [Mycobacterium bovis AF2122/97]
 gi|121492612|emb|CAL71080.1| Probable transposase (fragment) [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|124600386|gb|EAY59396.1| hypothetical protein TBCG_01023 [Mycobacterium tuberculosis C]
 gi|134149464|gb|EBA41509.1| transposase [Mycobacterium tuberculosis str. Haarlem]
 gi|148504970|gb|ABQ72779.1| putative transposase [Mycobacterium tuberculosis H37Ra]
 gi|148720771|gb|ABR05396.1| transposase [Mycobacterium tuberculosis F11]
 gi|224772550|dbj|BAH25356.1| putative transposase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253321436|gb|ACT26039.1| transposase [Mycobacterium tuberculosis KZN 1435]
 gi|289419574|gb|EFD16775.1| transposase [Mycobacterium tuberculosis CPHL_A]
 gi|289439814|gb|EFD22307.1| transposase [Mycobacterium tuberculosis KZN 605]
 gi|289538106|gb|EFD42684.1| transposase [Mycobacterium tuberculosis K85]
 gi|289685301|gb|EFD52789.1| transposase [Mycobacterium tuberculosis 02_1987]
 gi|289693684|gb|EFD61113.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289712684|gb|EFD76696.1| transposase [Mycobacterium tuberculosis T85]
 gi|298494327|gb|EFI29621.1| transposase [Mycobacterium tuberculosis 94_M4241A]
 gi|308216320|gb|EFO75719.1| transposase [Mycobacterium tuberculosis SUMu001]
 gi|308325368|gb|EFP14219.1| transposase [Mycobacterium tuberculosis SUMu002]
 gi|308331514|gb|EFP20365.1| transposase [Mycobacterium tuberculosis SUMu003]
 gi|308335320|gb|EFP24171.1| transposase [Mycobacterium tuberculosis SUMu004]
 gi|308339128|gb|EFP27979.1| transposase [Mycobacterium tuberculosis SUMu005]
 gi|308342799|gb|EFP31650.1| transposase [Mycobacterium tuberculosis SUMu006]
 gi|308346709|gb|EFP35560.1| transposase [Mycobacterium tuberculosis SUMu007]
 gi|308350624|gb|EFP39475.1| transposase [Mycobacterium tuberculosis SUMu008]
 gi|308355257|gb|EFP44108.1| transposase [Mycobacterium tuberculosis SUMu009]
 gi|308359211|gb|EFP48062.1| transposase [Mycobacterium tuberculosis SUMu010]
 gi|308363113|gb|EFP51964.1| transposase [Mycobacterium tuberculosis SUMu011]
 gi|323720536|gb|EGB29618.1| transposase [Mycobacterium tuberculosis CDC1551A]
 gi|326904736|gb|EGE51669.1| transposase [Mycobacterium tuberculosis W-148]
 gi|328459677|gb|AEB05100.1| transposase [Mycobacterium tuberculosis KZN 4207]
 gi|339294037|gb|AEJ46148.1| transposase [Mycobacterium tuberculosis CCDC5079]
 gi|339330453|emb|CCC26118.1| putative transposase (fragment) [Mycobacterium africanum GM041182]
 gi|341600981|emb|CCC63652.1| probable transposase (fragment) [Mycobacterium bovis BCG str. 
Moreau RDJ]
 gi|344218862|gb|AEM99492.1| transposase [Mycobacterium tuberculosis CTRI-2]
Length=228

 Score =  434 bits (1116),  Expect = 4e-120, Method: Compositional matrix adjust.
 Identities = 227/228 (99%), Positives = 228/228 (100%), Gaps = 0/228 (0%)

Query  1    VPHPTTLMKLTTRCGSAAIDGLNEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDLGL  60
            +PHPTTLMKLTTRCGSAAIDGLNEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDLGL
Sbjct  1    MPHPTTLMKLTTRCGSAAIDGLNEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDLGL  60

Query  61   LAKAMRRIAATGKRIQAAGGAVRTRVGDRSRAAGRRAHAVAAKLRSRAELGRDEARAAVL  120
            LAKAMRRIAATGKRIQAAGGAVRTRVGDRSRAAGRRAHAVAAKLRSRAELGRDEARAAVL
Sbjct  61   LAKAMRRIAATGKRIQAAGGAVRTRVGDRSRAAGRRAHAVAAKLRSRAELGRDEARAAVL  120

Query  121  RFTGELAELAQAAAQEAQQLLDNAKQAVLRAKAKAAALAARGERDAVAGRRCGGLVRAVN  180
            RFTGELAELAQAAAQEAQQLLDNAKQAVLRAKAKAAALAARGERDAVAGRRCGGLVRAVN
Sbjct  121  RFTGELAELAQAAAQEAQQLLDNAKQAVLRAKAKAAALAARGERDAVAGRRCGGLVRAVN  180

Query  181  DLTELLNATRQIVAQTRQRVAGITSDGASRRVSLHDGDARPDHQGSAR  228
            DLTELLNATRQIVAQTRQRVAGITSDGASRRVSLHDGDARPDHQGSAR
Sbjct  181  DLTELLNATRQIVAQTRQRVAGITSDGASRRVSLHDGDARPDHQGSAR  228


>gi|289761172|ref|ZP_06520550.1| LOW QUALITY PROTEIN: transposase [Mycobacterium tuberculosis 
GM 1503]
 gi|289708678|gb|EFD72694.1| LOW QUALITY PROTEIN: transposase [Mycobacterium tuberculosis 
GM 1503]
Length=239

 Score =  434 bits (1116),  Expect = 4e-120, Method: Compositional matrix adjust.
 Identities = 228/228 (100%), Positives = 228/228 (100%), Gaps = 0/228 (0%)

Query  1    VPHPTTLMKLTTRCGSAAIDGLNEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDLGL  60
            VPHPTTLMKLTTRCGSAAIDGLNEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDLGL
Sbjct  12   VPHPTTLMKLTTRCGSAAIDGLNEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDLGL  71

Query  61   LAKAMRRIAATGKRIQAAGGAVRTRVGDRSRAAGRRAHAVAAKLRSRAELGRDEARAAVL  120
            LAKAMRRIAATGKRIQAAGGAVRTRVGDRSRAAGRRAHAVAAKLRSRAELGRDEARAAVL
Sbjct  72   LAKAMRRIAATGKRIQAAGGAVRTRVGDRSRAAGRRAHAVAAKLRSRAELGRDEARAAVL  131

Query  121  RFTGELAELAQAAAQEAQQLLDNAKQAVLRAKAKAAALAARGERDAVAGRRCGGLVRAVN  180
            RFTGELAELAQAAAQEAQQLLDNAKQAVLRAKAKAAALAARGERDAVAGRRCGGLVRAVN
Sbjct  132  RFTGELAELAQAAAQEAQQLLDNAKQAVLRAKAKAAALAARGERDAVAGRRCGGLVRAVN  191

Query  181  DLTELLNATRQIVAQTRQRVAGITSDGASRRVSLHDGDARPDHQGSAR  228
            DLTELLNATRQIVAQTRQRVAGITSDGASRRVSLHDGDARPDHQGSAR
Sbjct  192  DLTELLNATRQIVAQTRQRVAGITSDGASRRVSLHDGDARPDHQGSAR  239


>gi|289442458|ref|ZP_06432202.1| transposase [Mycobacterium tuberculosis T46]
 gi|289569016|ref|ZP_06449243.1| transposase [Mycobacterium tuberculosis T17]
 gi|289749568|ref|ZP_06508946.1| transposase [Mycobacterium tuberculosis T92]
 gi|289415377|gb|EFD12617.1| transposase [Mycobacterium tuberculosis T46]
 gi|289542770|gb|EFD46418.1| transposase [Mycobacterium tuberculosis T17]
 gi|289690155|gb|EFD57584.1| transposase [Mycobacterium tuberculosis T92]
Length=228

 Score =  432 bits (1111),  Expect = 2e-119, Method: Compositional matrix adjust.
 Identities = 226/228 (99%), Positives = 227/228 (99%), Gaps = 0/228 (0%)

Query  1    VPHPTTLMKLTTRCGSAAIDGLNEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDLGL  60
            +PHPTTLMKLTTRCGSAAIDGLNEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDLGL
Sbjct  1    MPHPTTLMKLTTRCGSAAIDGLNEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDLGL  60

Query  61   LAKAMRRIAATGKRIQAAGGAVRTRVGDRSRAAGRRAHAVAAKLRSRAELGRDEARAAVL  120
            LAKAMRRIAA GKRIQAAGGAVRTRVGDRSRAAGRRAHAVAAKLRSRAELGRDEARAAVL
Sbjct  61   LAKAMRRIAAIGKRIQAAGGAVRTRVGDRSRAAGRRAHAVAAKLRSRAELGRDEARAAVL  120

Query  121  RFTGELAELAQAAAQEAQQLLDNAKQAVLRAKAKAAALAARGERDAVAGRRCGGLVRAVN  180
            RFTGELAELAQAAAQEAQQLLDNAKQAVLRAKAKAAALAARGERDAVAGRRCGGLVRAVN
Sbjct  121  RFTGELAELAQAAAQEAQQLLDNAKQAVLRAKAKAAALAARGERDAVAGRRCGGLVRAVN  180

Query  181  DLTELLNATRQIVAQTRQRVAGITSDGASRRVSLHDGDARPDHQGSAR  228
            DLTELLNATRQIVAQTRQRVAGITSDGASRRVSLHDGDARPDHQGSAR
Sbjct  181  DLTELLNATRQIVAQTRQRVAGITSDGASRRVSLHDGDARPDHQGSAR  228


>gi|339297677|gb|AEJ49787.1| transposase [Mycobacterium tuberculosis CCDC5180]
Length=228

 Score =  431 bits (1108),  Expect = 4e-119, Method: Compositional matrix adjust.
 Identities = 226/228 (99%), Positives = 227/228 (99%), Gaps = 0/228 (0%)

Query  1    VPHPTTLMKLTTRCGSAAIDGLNEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDLGL  60
            +PHPTTLMKLTTRCGSAAIDGLNEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDLGL
Sbjct  1    MPHPTTLMKLTTRCGSAAIDGLNEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDLGL  60

Query  61   LAKAMRRIAATGKRIQAAGGAVRTRVGDRSRAAGRRAHAVAAKLRSRAELGRDEARAAVL  120
            LAKAMRRIAATGKRIQAAGGAVRTRVGDRS AAGRRAHAVAAKLRSRAELGRDEARAAVL
Sbjct  61   LAKAMRRIAATGKRIQAAGGAVRTRVGDRSGAAGRRAHAVAAKLRSRAELGRDEARAAVL  120

Query  121  RFTGELAELAQAAAQEAQQLLDNAKQAVLRAKAKAAALAARGERDAVAGRRCGGLVRAVN  180
            RFTGELAELAQAAAQEAQQLLDNAKQAVLRAKAKAAALAARGERDAVAGRRCGGLVRAVN
Sbjct  121  RFTGELAELAQAAAQEAQQLLDNAKQAVLRAKAKAAALAARGERDAVAGRRCGGLVRAVN  180

Query  181  DLTELLNATRQIVAQTRQRVAGITSDGASRRVSLHDGDARPDHQGSAR  228
            DLTELLNATRQIVAQTRQRVAGITSDGASRRVSLHDGDARPDHQGSAR
Sbjct  181  DLTELLNATRQIVAQTRQRVAGITSDGASRRVSLHDGDARPDHQGSAR  228


>gi|167968536|ref|ZP_02550813.1| transposase [Mycobacterium tuberculosis H37Ra]
 gi|297730549|ref|ZP_06959667.1| transposase [Mycobacterium tuberculosis KZN R506]
 gi|313657878|ref|ZP_07814758.1| transposase [Mycobacterium tuberculosis KZN V2475]
Length=221

 Score =  417 bits (1072),  Expect = 6e-115, Method: Compositional matrix adjust.
 Identities = 221/221 (100%), Positives = 221/221 (100%), Gaps = 0/221 (0%)

Query  8    MKLTTRCGSAAIDGLNEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDLGLLAKAMRR  67
            MKLTTRCGSAAIDGLNEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDLGLLAKAMRR
Sbjct  1    MKLTTRCGSAAIDGLNEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDLGLLAKAMRR  60

Query  68   IAATGKRIQAAGGAVRTRVGDRSRAAGRRAHAVAAKLRSRAELGRDEARAAVLRFTGELA  127
            IAATGKRIQAAGGAVRTRVGDRSRAAGRRAHAVAAKLRSRAELGRDEARAAVLRFTGELA
Sbjct  61   IAATGKRIQAAGGAVRTRVGDRSRAAGRRAHAVAAKLRSRAELGRDEARAAVLRFTGELA  120

Query  128  ELAQAAAQEAQQLLDNAKQAVLRAKAKAAALAARGERDAVAGRRCGGLVRAVNDLTELLN  187
            ELAQAAAQEAQQLLDNAKQAVLRAKAKAAALAARGERDAVAGRRCGGLVRAVNDLTELLN
Sbjct  121  ELAQAAAQEAQQLLDNAKQAVLRAKAKAAALAARGERDAVAGRRCGGLVRAVNDLTELLN  180

Query  188  ATRQIVAQTRQRVAGITSDGASRRVSLHDGDARPDHQGSAR  228
            ATRQIVAQTRQRVAGITSDGASRRVSLHDGDARPDHQGSAR
Sbjct  181  ATRQIVAQTRQRVAGITSDGASRRVSLHDGDARPDHQGSAR  221


>gi|340626046|ref|YP_004744498.1| putative transposase (fragment) [Mycobacterium canettii CIPT 
140010059]
 gi|340004236|emb|CCC43377.1| putative transposase (fragment) [Mycobacterium canettii CIPT 
140010059]
Length=229

 Score =  331 bits (848),  Expect = 6e-89, Method: Compositional matrix adjust.
 Identities = 218/225 (97%), Positives = 220/225 (98%), Gaps = 0/225 (0%)

Query  1    VPHPTTLMKLTTRCGSAAIDGLNEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDLGL  60
            +PHPTTLMKLTTRCGSAAIDGLNEALLAKAAEAKLLGTNRIRADTTVA ANVSYPTDLGL
Sbjct  1    MPHPTTLMKLTTRCGSAAIDGLNEALLAKAAEAKLLGTNRIRADTTVAPANVSYPTDLGL  60

Query  61   LAKAMRRIAATGKRIQAAGGAVRTRVGDRSRAAGRRAHAVAAKLRSRAELGRDEARAAVL  120
            LAKAMRRIAATGKRIQAAGGAVRTRVGDRSRAAGRRAHAVAAKLRSRAELGRDEARAAVL
Sbjct  61   LAKAMRRIAATGKRIQAAGGAVRTRVGDRSRAAGRRAHAVAAKLRSRAELGRDEARAAVL  120

Query  121  RFTGELAELAQAAAQEAQQLLDNAKQAVLRAKAKAAALAARGERDAVAGRRCGGLVRAVN  180
            R TGELAELAQAAAQEAQ LLDNAKQAVLRAKAKAAALAARGERDAVAGRRCGGLVRAVN
Sbjct  121  RCTGELAELAQAAAQEAQHLLDNAKQAVLRAKAKAAALAARGERDAVAGRRCGGLVRAVN  180

Query  181  DLTELLNATRQIVAQTRQRVAGITSDGASRRVSLHDGDARPDHQG  225
            DLTELLNATRQIVAQTRQRVAGITSDGASRRVSLHDGDARP  +G
Sbjct  181  DLTELLNATRQIVAQTRQRVAGITSDGASRRVSLHDGDARPITKG  225


>gi|111025277|ref|YP_707697.1| transposase [Rhodococcus jostii RHA1]
 gi|110824256|gb|ABG99539.1| probable transposase [Rhodococcus jostii RHA1]
Length=479

 Score =  278 bits (712),  Expect = 3e-73, Method: Compositional matrix adjust.
 Identities = 160/225 (72%), Positives = 184/225 (82%), Gaps = 0/225 (0%)

Query  1    VPHPTTLMKLTTRCGSAAIDGLNEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDLGL  60
            VPHPTTLMKLTTRCG+AA+ GLNEALLAKA EAK+L T ++RADTTV  +NVSYPTD GL
Sbjct  100  VPHPTTLMKLTTRCGAAAVVGLNEALLAKATEAKVLRTTKLRADTTVVPSNVSYPTDSGL  159

Query  61   LAKAMRRIAATGKRIQAAGGAVRTRVGDRSRAAGRRAHAVAAKLRSRAELGRDEARAAVL  120
            LAKA+RRIA TGKRIQAAGGA RT V DRSRAAGRRAHA+  KLRSR+  GRDEA AAV 
Sbjct  160  LAKAIRRIAVTGKRIQAAGGATRTTVRDRSRAAGRRAHAIGFKLRSRSAAGRDEALAAVR  219

Query  121  RFTGELAELAQAAAQEAQQLLDNAKQAVLRAKAKAAALAARGERDAVAGRRCGGLVRAVN  180
            R TGELA+LA+ AA +A++LL NAK A+ RA+ KA A  A+GE D  AGRR G L RA++
Sbjct  220  RTTGELADLAETAATDAERLLTNAKHALRRARTKATARKAQGEHDGAAGRRRGRLARAID  279

Query  181  DLTELLNATRQIVAQTRQRVAGITSDGASRRVSLHDGDARPDHQG  225
            DL +L+ ATRQI AQTRQR+AG T DGA+RRVSLHD DARP  +G
Sbjct  280  DLEDLVTATRQITAQTRQRLAGQTPDGATRRVSLHDPDARPIAKG  324


>gi|111025371|ref|YP_707791.1| transposase [Rhodococcus jostii RHA1]
 gi|110824350|gb|ABG99633.1| transposase [Rhodococcus jostii RHA1]
Length=479

 Score =  277 bits (708),  Expect = 1e-72, Method: Compositional matrix adjust.
 Identities = 159/225 (71%), Positives = 184/225 (82%), Gaps = 0/225 (0%)

Query  1    VPHPTTLMKLTTRCGSAAIDGLNEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDLGL  60
            VPHPTTLMKLTTRCG+AA+DGLNEALLAKA EAK+L T  +RADTTV  +NVSYPTD GL
Sbjct  100  VPHPTTLMKLTTRCGAAAVDGLNEALLAKATEAKVLRTTTLRADTTVVPSNVSYPTDSGL  159

Query  61   LAKAMRRIAATGKRIQAAGGAVRTRVGDRSRAAGRRAHAVAAKLRSRAELGRDEARAAVL  120
            LAKA+RRIAATGKRIQAAG A RT V DRSRAAG+RAH++  KLRSR+  GRDEA AAV 
Sbjct  160  LAKAIRRIAATGKRIQAAGRATRTTVRDRSRAAGKRAHSIGFKLRSRSAAGRDEALAAVR  219

Query  121  RFTGELAELAQAAAQEAQQLLDNAKQAVLRAKAKAAALAARGERDAVAGRRCGGLVRAVN  180
            R TGELA+LA+ AA +A++LL NAK A+ RA+ KA A  A+GE D  AGRR G L RA++
Sbjct  220  RTTGELADLAETAATDAERLLTNAKHALRRARTKATARKAQGEHDGAAGRRRGRLARAID  279

Query  181  DLTELLNATRQIVAQTRQRVAGITSDGASRRVSLHDGDARPDHQG  225
            DL +L+ ATRQI AQTRQR+AG T DGA+RRVSLHD DARP  +G
Sbjct  280  DLEDLVTATRQITAQTRQRLAGQTPDGATRRVSLHDPDARPIAKG  324


>gi|111026321|ref|YP_708604.1| IS5 family transposase [Rhodococcus jostii RHA1]
 gi|110825164|gb|ABH00446.1| possible transposase, IS5 family [Rhodococcus jostii RHA1]
Length=337

 Score =  265 bits (676),  Expect = 4e-69, Method: Compositional matrix adjust.
 Identities = 159/225 (71%), Positives = 184/225 (82%), Gaps = 0/225 (0%)

Query  1    VPHPTTLMKLTTRCGSAAIDGLNEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDLGL  60
            VPHPTTLMKLTTRCG+AA+ GLNEALLAKA EAK+L T  +RADTTV  +NVSYPTD GL
Sbjct  100  VPHPTTLMKLTTRCGAAAVVGLNEALLAKATEAKVLRTTTLRADTTVVPSNVSYPTDSGL  159

Query  61   LAKAMRRIAATGKRIQAAGGAVRTRVGDRSRAAGRRAHAVAAKLRSRAELGRDEARAAVL  120
            LAKA+RRIA TGKRIQAAGGA RT V DRSRAAG+RAH++  KLRSR+  GRDEA AAV 
Sbjct  160  LAKAIRRIAVTGKRIQAAGGATRTTVRDRSRAAGKRAHSIGFKLRSRSAAGRDEALAAVR  219

Query  121  RFTGELAELAQAAAQEAQQLLDNAKQAVLRAKAKAAALAARGERDAVAGRRCGGLVRAVN  180
            R TGELA+LA+ AA +A++LL NAK A+ RA+AKA A  A+GE D  AGRR G L RA++
Sbjct  220  RTTGELADLAETAATDAERLLTNAKHALRRARAKATARKAQGEHDGAAGRRRGRLARAID  279

Query  181  DLTELLNATRQIVAQTRQRVAGITSDGASRRVSLHDGDARPDHQG  225
            DL +L+ ATRQI AQTRQR+AG T DGA+RRVSLHD DARP  +G
Sbjct  280  DLEDLVTATRQITAQTRQRLAGQTPDGATRRVSLHDPDARPIAKG  324


>gi|258652805|ref|YP_003201961.1| transposase IS4 family protein [Nakamurella multipartita DSM 
44233]
 gi|258556030|gb|ACV78972.1| transposase IS4 family protein [Nakamurella multipartita DSM 
44233]
Length=346

 Score =  187 bits (474),  Expect = 1e-45, Method: Compositional matrix adjust.
 Identities = 123/191 (65%), Positives = 147/191 (77%), Gaps = 0/191 (0%)

Query  35   LLGTNRIRADTTVARANVSYPTDLGLLAKAMRRIAATGKRIQAAGGAVRTRVGDRSRAAG  94
            ++ TNR+RADTTV  ANV+YPTD GLLAKA+RRI  + KRI AAGGAVRTRV DRSR+AG
Sbjct  1    MVRTNRVRADTTVVPANVAYPTDSGLLAKAIRRIGTSVKRIHAAGGAVRTRVRDRSRSAG  60

Query  95   RRAHAVAAKLRSRAELGRDEARAAVLRFTGELAELAQAAAQEAQQLLDNAKQAVLRAKAK  154
             +AH VAAKLRSRA+LGRDEARA V + TGELA+LA+ A ++ ++LL NA +A  RA A+
Sbjct  61   AKAHGVAAKLRSRAQLGRDEARAGVQKITGELADLAEQAIKDTRKLLVNAHRAADRALAR  120

Query  155  AAALAARGERDAVAGRRCGGLVRAVNDLTELLNATRQIVAQTRQRVAGITSDGASRRVSL  214
            A ALA  G RDA  GRR G LVRAVNDL  L+ AT +I+ QTR R+ G T DGA+R VSL
Sbjct  121  AKALAKTGIRDAAVGRRRGRLVRAVNDLQNLVEATERIIEQTRTRLTGRTPDGATRVVSL  180

Query  215  HDGDARPDHQG  225
            HD  ARP  +G
Sbjct  181  HDTQARPIAKG  191


>gi|167966937|ref|ZP_02549214.1| transposase [Mycobacterium tuberculosis H37Ra]
 gi|253800432|ref|YP_003033433.1| transposase [Mycobacterium tuberculosis KZN 1435]
 gi|254552491|ref|ZP_05142938.1| transposase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 8 more sequence titles
 
gi|294995843|ref|ZP_06801534.1| transposase [Mycobacterium tuberculosis 210]
 gi|297636046|ref|ZP_06953826.1| transposase [Mycobacterium tuberculosis KZN 4207]
 gi|297733045|ref|ZP_06962163.1| transposase [Mycobacterium tuberculosis KZN R506]
 gi|313660377|ref|ZP_07817257.1| transposase [Mycobacterium tuberculosis KZN V2475]
 gi|253321935|gb|ACT26538.1| transposase [Mycobacterium tuberculosis KZN 1435]
 gi|323717968|gb|EGB27156.1| transposase [Mycobacterium tuberculosis CDC1551A]
 gi|339296210|gb|AEJ48321.1| transposase [Mycobacterium tuberculosis CCDC5079]
 gi|339299810|gb|AEJ51920.1| transposase [Mycobacterium tuberculosis CCDC5180]
Length=259

 Score =  108 bits (270),  Expect = 6e-22, Method: Compositional matrix adjust.
 Identities = 55/78 (71%), Positives = 62/78 (80%), Gaps = 0/78 (0%)

Query  1    VPHPTTLMKLTTRCGSAAIDGLNEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDLGL  60
            VPHPTTLMKLTTRCG  A+ GLNEALLAKAA  KLL TN++RADTTV   +V YPTD GL
Sbjct  125  VPHPTTLMKLTTRCGEDAVAGLNEALLAKAASEKLLRTNKVRADTTVVEGDVGYPTDTGL  184

Query  61   LAKAMRRIAATGKRIQAA  78
            LAKA+  +A T  RI+AA
Sbjct  185  LAKAVGSMARTVARIKAA  202


>gi|169830876|ref|YP_001716858.1| putative methyl-accepting chemotaxis sensory transducer [Candidatus 
Desulforudis audaxviator MP104C]
 gi|169831953|ref|YP_001717935.1| putative methyl-accepting chemotaxis sensory transducer [Candidatus 
Desulforudis audaxviator MP104C]
 gi|169831954|ref|YP_001717936.1| putative methyl-accepting chemotaxis sensory transducer [Candidatus 
Desulforudis audaxviator MP104C]
 gi|169831955|ref|YP_001717937.1| putative methyl-accepting chemotaxis sensory transducer [Candidatus 
Desulforudis audaxviator MP104C]
 gi|169637720|gb|ACA59226.1| putative methyl-accepting chemotaxis sensory transducer [Candidatus 
Desulforudis audaxviator MP104C]
 gi|169638797|gb|ACA60303.1| putative methyl-accepting chemotaxis sensory transducer [Candidatus 
Desulforudis audaxviator MP104C]
 gi|169638798|gb|ACA60304.1| putative methyl-accepting chemotaxis sensory transducer [Candidatus 
Desulforudis audaxviator MP104C]
 gi|169638799|gb|ACA60305.1| putative methyl-accepting chemotaxis sensory transducer [Candidatus 
Desulforudis audaxviator MP104C]
Length=464

 Score =  108 bits (269),  Expect = 7e-22, Method: Compositional matrix adjust.
 Identities = 82/231 (36%), Positives = 124/231 (54%), Gaps = 25/231 (10%)

Query  1    VPHPTTLMKLTTRC---GSAAIDGLNEALLAKAAEAKLLGT-NRIRADTTVARANVSYPT  56
            VPHP++L K+  R    GS  +  LN  L+ KA E KLL + N++R DTT   AN+ +PT
Sbjct  103  VPHPSSLTKIRQRLDADGSDHMAALNAHLVRKAQEEKLLKSRNKVRVDTTAIEANIHHPT  162

Query  57   DLGLLAKAMRRIAATGKRIQAAGGAVRTRVGDRSRAAGRRAHAVAAKLRSRAELGRDEAR  116
            D GL+A ++R +    K+IQA        + DR+R+  +R  A+A  L+ R      E+ 
Sbjct  163  DSGLIADSVRVVTRLAKKIQAVADNTSVAIRDRTRSIKKRVLAIAKVLKRRT----GESI  218

Query  117  AAVLRFTGELAELAQAAAQEAQQLLDNAKQAVLRAKAKAAALAARGERDAVAGRRCGGLV  176
              V R TGE+A++A+   Q+A+ ++ +  Q     +A+  A  AR E+  +A R      
Sbjct  219  QEVRRITGEMADIAEKTLQDARNVVQHLHQ-----QARHLAGTARDEKRRLAAR------  267

Query  177  RAVNDLTELLNATRQIVAQTRQRVAGITSDGASRRVSLHDGDARPDHQGSA  227
                 L ++L+   QIV+Q RQ  AG   +   R VSL D +ARP  +G A
Sbjct  268  -----LEKILDLGEQIVSQARQVNAG-QLNLPERVVSLSDPEARPIRRGKA  312


>gi|15610522|ref|NP_217903.1| transposase [Mycobacterium tuberculosis H37Rv]
 gi|15842979|ref|NP_338016.1| IS1560 transposase [Mycobacterium tuberculosis CDC1551]
 gi|31794566|ref|NP_857059.1| transposase [Mycobacterium bovis AF2122/97]
 61 more sequence titles
 
gi|121639310|ref|YP_979534.1| putative transposase [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148663249|ref|YP_001284772.1| putative transposase [Mycobacterium tuberculosis H37Ra]
 gi|148824593|ref|YP_001289347.1| transposase [Mycobacterium tuberculosis F11]
 gi|224991807|ref|YP_002646496.1| putative transposase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|254233987|ref|ZP_04927312.1| hypothetical protein TBCG_03328 [Mycobacterium tuberculosis C]
 gi|254365999|ref|ZP_04982044.1| transposase [Mycobacterium tuberculosis str. Haarlem]
 gi|289444958|ref|ZP_06434702.1| transposase [Mycobacterium tuberculosis T46]
 gi|289449082|ref|ZP_06438826.1| transposase [Mycobacterium tuberculosis CPHL_A]
 gi|289555662|ref|ZP_06444872.1| transposase [Mycobacterium tuberculosis KZN 605]
 gi|289576117|ref|ZP_06456344.1| transposase [Mycobacterium tuberculosis K85]
 gi|289747208|ref|ZP_06506586.1| transposase [Mycobacterium tuberculosis 02_1987]
 gi|289752100|ref|ZP_06511478.1| transposase [Mycobacterium tuberculosis T92]
 gi|289755515|ref|ZP_06514893.1| transposase [Mycobacterium tuberculosis EAS054]
 gi|289759545|ref|ZP_06518923.1| transposase [Mycobacterium tuberculosis T85]
 gi|298526865|ref|ZP_07014274.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308232446|ref|ZP_07664087.1| transposase [Mycobacterium tuberculosis SUMu001]
 gi|308370249|ref|ZP_07666901.1| transposase [Mycobacterium tuberculosis SUMu002]
 gi|308371329|ref|ZP_07667138.1| transposase [Mycobacterium tuberculosis SUMu003]
 gi|308372526|ref|ZP_07667400.1| transposase [Mycobacterium tuberculosis SUMu004]
 gi|308373729|ref|ZP_07667641.1| transposase [Mycobacterium tuberculosis SUMu005]
 gi|308374860|ref|ZP_07667883.1| transposase [Mycobacterium tuberculosis SUMu006]
 gi|308376103|ref|ZP_07668194.1| transposase [Mycobacterium tuberculosis SUMu007]
 gi|308377330|ref|ZP_07668488.1| transposase [Mycobacterium tuberculosis SUMu008]
 gi|308378303|ref|ZP_07668716.1| transposase [Mycobacterium tuberculosis SUMu009]
 gi|308379497|ref|ZP_07668971.1| transposase [Mycobacterium tuberculosis SUMu010]
 gi|308380679|ref|ZP_07669249.1| transposase [Mycobacterium tuberculosis SUMu011]
 gi|339633391|ref|YP_004725033.1| transposase [Mycobacterium africanum GM041182]
 gi|2661665|emb|CAA15771.1| POSSIBLE TRANSPOSASE [Mycobacterium tuberculosis H37Rv]
 gi|13883318|gb|AAK47830.1| IS1560, transposase [Mycobacterium tuberculosis CDC1551]
 gi|31620163|emb|CAD95606.1| POSSIBLE TRANSPOSASE [Mycobacterium bovis AF2122/97]
 gi|121494958|emb|CAL73444.1| Possible transposase [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124599516|gb|EAY58620.1| hypothetical protein TBCG_03328 [Mycobacterium tuberculosis C]
 gi|134151512|gb|EBA43557.1| transposase [Mycobacterium tuberculosis str. Haarlem]
 gi|148507401|gb|ABQ75210.1| putative transposase [Mycobacterium tuberculosis H37Ra]
 gi|148723120|gb|ABR07745.1| transposase [Mycobacterium tuberculosis F11]
 gi|224774922|dbj|BAH27728.1| putative transposase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|289417877|gb|EFD15117.1| transposase [Mycobacterium tuberculosis T46]
 gi|289422040|gb|EFD19241.1| transposase [Mycobacterium tuberculosis CPHL_A]
 gi|289440294|gb|EFD22787.1| transposase [Mycobacterium tuberculosis KZN 605]
 gi|289540548|gb|EFD45126.1| transposase [Mycobacterium tuberculosis K85]
 gi|289687736|gb|EFD55224.1| transposase [Mycobacterium tuberculosis 02_1987]
 gi|289692687|gb|EFD60116.1| transposase [Mycobacterium tuberculosis T92]
 gi|289696102|gb|EFD63531.1| transposase [Mycobacterium tuberculosis EAS054]
 gi|289715109|gb|EFD79121.1| transposase [Mycobacterium tuberculosis T85]
 gi|298496659|gb|EFI31953.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308213958|gb|EFO73357.1| transposase [Mycobacterium tuberculosis SUMu001]
 gi|308324904|gb|EFP13755.1| transposase [Mycobacterium tuberculosis SUMu002]
 gi|308329135|gb|EFP17986.1| transposase [Mycobacterium tuberculosis SUMu003]
 gi|308332970|gb|EFP21821.1| transposase [Mycobacterium tuberculosis SUMu004]
 gi|308336587|gb|EFP25438.1| transposase [Mycobacterium tuberculosis SUMu005]
 gi|308340460|gb|EFP29311.1| transposase [Mycobacterium tuberculosis SUMu006]
 gi|308344327|gb|EFP33178.1| transposase [Mycobacterium tuberculosis SUMu007]
 gi|308348259|gb|EFP37110.1| transposase [Mycobacterium tuberculosis SUMu008]
 gi|308352984|gb|EFP41835.1| transposase [Mycobacterium tuberculosis SUMu009]
 gi|308356826|gb|EFP45677.1| transposase [Mycobacterium tuberculosis SUMu010]
 gi|308360776|gb|EFP49627.1| transposase [Mycobacterium tuberculosis SUMu011]
 gi|326905226|gb|EGE52159.1| transposase [Mycobacterium tuberculosis W-148]
 gi|328460164|gb|AEB05587.1| transposase [Mycobacterium tuberculosis KZN 4207]
 gi|339332747|emb|CCC28468.1| putative transposase [Mycobacterium africanum GM041182]
 gi|341603335|emb|CCC66016.1| possible transposase [Mycobacterium bovis BCG str. Moreau RDJ]
 gi|344221225|gb|AEN01856.1| transposase [Mycobacterium tuberculosis CTRI-2]
Length=234

 Score =  108 bits (269),  Expect = 8e-22, Method: Compositional matrix adjust.
 Identities = 55/78 (71%), Positives = 62/78 (80%), Gaps = 0/78 (0%)

Query  1    VPHPTTLMKLTTRCGSAAIDGLNEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDLGL  60
            VPHPTTLMKLTTRCG  A+ GLNEALLAKAA  KLL TN++RADTTV   +V YPTD GL
Sbjct  100  VPHPTTLMKLTTRCGEDAVAGLNEALLAKAASEKLLRTNKVRADTTVVEGDVGYPTDTGL  159

Query  61   LAKAMRRIAATGKRIQAA  78
            LAKA+  +A T  RI+AA
Sbjct  160  LAKAVGSMARTVARIKAA  177


>gi|289763567|ref|ZP_06522945.1| transposase [Mycobacterium tuberculosis GM 1503]
 gi|289711073|gb|EFD75089.1| transposase [Mycobacterium tuberculosis GM 1503]
Length=177

 Score =  108 bits (269),  Expect = 9e-22, Method: Compositional matrix adjust.
 Identities = 55/78 (71%), Positives = 62/78 (80%), Gaps = 0/78 (0%)

Query  1    VPHPTTLMKLTTRCGSAAIDGLNEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDLGL  60
            VPHPTTLMKLTTRCG  A+ GLNEALLAKAA  KLL TN++RADTTV   +V YPTD GL
Sbjct  43   VPHPTTLMKLTTRCGEDAVAGLNEALLAKAASEKLLRTNKVRADTTVVEGDVGYPTDTGL  102

Query  61   LAKAMRRIAATGKRIQAA  78
            LAKA+  +A T  RI+AA
Sbjct  103  LAKAVGSMARTVARIKAA  120


>gi|289571621|ref|ZP_06451848.1| transposase [Mycobacterium tuberculosis T17]
 gi|289545375|gb|EFD49023.1| transposase [Mycobacterium tuberculosis T17]
Length=240

 Score =  107 bits (268),  Expect = 9e-22, Method: Compositional matrix adjust.
 Identities = 55/78 (71%), Positives = 62/78 (80%), Gaps = 0/78 (0%)

Query  1    VPHPTTLMKLTTRCGSAAIDGLNEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDLGL  60
            VPHPTTLMKLTTRCG  A+ GLNEALLAKAA  KLL TN++RADTTV   +V YPTD GL
Sbjct  106  VPHPTTLMKLTTRCGEDAVAGLNEALLAKAASEKLLRTNKVRADTTVVEGDVGYPTDTGL  165

Query  61   LAKAMRRIAATGKRIQAA  78
            LAKA+  +A T  RI+AA
Sbjct  166  LAKAVGSMARTVARIKAA  183


>gi|307086165|ref|ZP_07495278.1| hypothetical protein TMLG_02974 [Mycobacterium tuberculosis SUMu012]
 gi|308364381|gb|EFP53232.1| hypothetical protein TMLG_02974 [Mycobacterium tuberculosis SUMu012]
Length=200

 Score =  106 bits (264),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 53/76 (70%), Positives = 60/76 (79%), Gaps = 0/76 (0%)

Query  1    VPHPTTLMKLTTRCGSAAIDGLNEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDLGL  60
            VPHPTTLMKLTTRCG  A+ GLNEALLAKAA  KLL TN++RADTTV   +V YPTD GL
Sbjct  125  VPHPTTLMKLTTRCGEDAVAGLNEALLAKAASEKLLRTNKVRADTTVVEGDVGYPTDTGL  184

Query  61   LAKAMRRIAATGKRIQ  76
            LAKA+  +A T  RI+
Sbjct  185  LAKAVGSMARTVARIK  200


>gi|83590979|ref|YP_430988.1| IS5 family transposase [Moorella thermoacetica ATCC 39073]
 gi|83573893|gb|ABC20445.1| transposase, IS5 family [Moorella thermoacetica ATCC 39073]
Length=260

 Score = 94.7 bits (234),  Expect = 9e-18, Method: Compositional matrix adjust.
 Identities = 54/126 (43%), Positives = 75/126 (60%), Gaps = 4/126 (3%)

Query  1    VPHPTTLMKLTTRCGSAAIDGLNEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDLGL  60
            VPH TTL+KLT RCG   +  LN AL+ KA E K++   +++ DTTV  AN+ +PTD GL
Sbjct  100  VPHATTLIKLTKRCGPGIVKELNAALVQKAREEKIIRGKKLQVDTTVVEANIHHPTDAGL  159

Query  61   LAKAMRRIAATGKRIQAAGGAVRTRVGDRSRAAGRRAHAVAAKLRSRAELGRDEARAAVL  120
            LA  +R I  T K+IQ AG AV     +R R+  +R +A+   L+ R+    +EA   V 
Sbjct  160  LADGVRVITRTVKKIQEAGIAVAGAFHNRQRSIKKRIYAINKVLKRRS----NEAYQEVR  215

Query  121  RFTGEL  126
              TG +
Sbjct  216  EITGTI  221


>gi|308406141|ref|ZP_07495279.2| transposase [Mycobacterium tuberculosis SUMu012]
 gi|308364375|gb|EFP53226.1| transposase [Mycobacterium tuberculosis SUMu012]
Length=272

 Score = 91.7 bits (226),  Expect = 7e-17, Method: Compositional matrix adjust.
 Identities = 59/132 (45%), Positives = 80/132 (61%), Gaps = 16/132 (12%)

Query  94   GRRAHAVAAKLRSRAELGRDEARAAVLRFTGELAELAQAAAQEAQQLLDNAKQAVLRAKA  153
            GRRA A+A+KLR R    RD+A+A V R TGELA +A+ A  EA  ++ NA++AV RA  
Sbjct  2    GRRARAIASKLRLRGAQQRDQAQAFVRRITGELAGIAEQALTEAAAVVRNAQRAVRRA--  59

Query  154  KAAALAARGERDAVAGRRCGGLVRAVNDLTELLNATRQIVAQTRQRVAGITSDGASRRVS  213
                          +GRR   L +A+N L +L+  T ++V Q R R+AG+  D +SR VS
Sbjct  60   --------------SGRRKAWLRQAINHLEKLIGRTERVVDQARSRLAGVMPDSSSRLVS  105

Query  214  LHDGDARPDHQG  225
            LHD DARP  +G
Sbjct  106  LHDADARPIRKG  117


>gi|169830618|ref|YP_001716600.1| hypothetical protein Daud_0420 [Candidatus Desulforudis audaxviator 
MP104C]
 gi|169637462|gb|ACA58968.1| hypothetical protein Daud_0420 [Candidatus Desulforudis audaxviator 
MP104C]
Length=246

 Score = 81.6 bits (200),  Expect = 8e-14, Method: Compositional matrix adjust.
 Identities = 44/101 (44%), Positives = 63/101 (63%), Gaps = 4/101 (3%)

Query  1    VPHPTTLMKLTTRC---GSAAIDGLNEALLAKAAEAKLLGT-NRIRADTTVARANVSYPT  56
            VPHP+TL K+  R    GS  +  LNE L+ KAAE K++ + N++R DTTV  AN+ +PT
Sbjct  102  VPHPSTLSKIRQRLDTNGSDHMAELNEHLVRKAAEEKIIKSRNKVRVDTTVVEANIHHPT  161

Query  57   DLGLLAKAMRRIAATGKRIQAAGGAVRTRVGDRSRAAGRRA  97
            D GL+A  +R +    K+IQA  G   T + DR+R+  +R 
Sbjct  162  DSGLIADTVRVVTRLAKKIQAVAGDTGTAIRDRTRSIKKRV  202


>gi|253577715|ref|ZP_04855012.1| transposase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251842893|gb|EES70945.1| transposase [Paenibacillus sp. oral taxon 786 str. D14]
Length=457

 Score = 79.7 bits (195),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 64/227 (29%), Positives = 108/227 (48%), Gaps = 32/227 (14%)

Query  1    VPHPTTLMKLTTRCGSAAIDGLNEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDLGL  60
            +P P+TL+    R G   ++ +N AL+ +  E  +L T ++R DTTV  +++ +PTD  L
Sbjct  105  MPDPSTLIYARKRYGDKIVEDINAALVKQCEEKAVLKTRKLRTDTTVVESDIHHPTDATL  164

Query  61   LAKAMRRIAATGKRIQAAGGAVRTRVGDRSRAAGRRAHAVAAKLRSRAELGRDEARAAVL  120
            L   ++ I  T ++I+           DR+     +  ++A  LR R      E+   V 
Sbjct  165  LQDGVKVITRTIQKIRKVASHTVQGFEDRTAEIKEKILSIAKVLRRRTR----ESWEEVD  220

Query  121  RFTGELAELAQAAAQEAQQLLDNAKQAVLRAKAKAAALAARGERDAVAGRRCGGLVRAVN  180
            R TG + E+A+    +AQ +++      L+ K KAA                  L ++  
Sbjct  221  RITGSVIEVAENVVNKAQAVIEK-----LQDKGKAA------------------LRQSKT  257

Query  181  DLTELLNATRQIVAQTRQRVAG--ITSDGASRRVSLHDGDARPDHQG  225
             LTE +  T +++ Q +Q V+G  I +D   R VS  D +ARP  +G
Sbjct  258  KLTEAVTLTGKLLEQAKQVVSGNRIIAD---RIVSFFDPEARPIKKG  301


>gi|167966936|ref|ZP_02549213.1| transposase [Mycobacterium tuberculosis H37Ra]
 gi|253800433|ref|YP_003033434.1| transposase [Mycobacterium tuberculosis KZN 1435]
 gi|254552492|ref|ZP_05142939.1| transposase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 6 more sequence titles
 
gi|294995842|ref|ZP_06801533.1| transposase [Mycobacterium tuberculosis 210]
 gi|297636047|ref|ZP_06953827.1| transposase [Mycobacterium tuberculosis KZN 4207]
 gi|297733046|ref|ZP_06962164.1| transposase [Mycobacterium tuberculosis KZN R506]
 gi|313660378|ref|ZP_07817258.1| transposase [Mycobacterium tuberculosis KZN V2475]
 gi|253321936|gb|ACT26539.1| transposase [Mycobacterium tuberculosis KZN 1435]
 gi|323717969|gb|EGB27157.1| transposase [Mycobacterium tuberculosis CDC1551A]
Length=246

 Score = 70.5 bits (171),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 44/105 (42%), Positives = 61/105 (59%), Gaps = 16/105 (15%)

Query  121  RFTGELAELAQAAAQEAQQLLDNAKQAVLRAKAKAAALAARGERDAVAGRRCGGLVRAVN  180
            R TGELA +A+ A  EA  ++ NA++AV RA                +GRR   L +A+N
Sbjct  3    RITGELAGIAEQALTEAAAVVRNAQRAVRRA----------------SGRRKAWLRQAIN  46

Query  181  DLTELLNATRQIVAQTRQRVAGITSDGASRRVSLHDGDARPDHQG  225
             L +L+  T ++V Q R R+AG+  D +SR VSLHD DARP  +G
Sbjct  47   HLEKLIGRTERVVDQARSRLAGVMPDSSSRLVSLHDADARPIRKG  91


>gi|147677689|ref|YP_001211904.1| hypothetical protein PTH_1354 [Pelotomaculum thermopropionicum 
SI]
 gi|147678361|ref|YP_001212576.1| transposase and inactivated derivatives [Pelotomaculum thermopropionicum 
SI]
 gi|146273786|dbj|BAF59535.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
 gi|146274458|dbj|BAF60207.1| transposase and inactivated derivatives [Pelotomaculum thermopropionicum 
SI]
Length=450

 Score = 62.8 bits (151),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 63/231 (28%), Positives = 107/231 (47%), Gaps = 40/231 (17%)

Query  1    VPHPTTLMKLTTRCGSAAIDGLNEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDLGL  60
            +P PTTL+K   R G   ++ LNE LL K  + K+L T ++R DTTV  +N+ +PTD  L
Sbjct  100  MPDPTTLIKARQRYGDEVVEQLNELLLLKLQDEKILKTRKLRVDTTVVESNIHHPTDATL  159

Query  61   L---AKAMRRIAATGKRI--QAAGGAVRTRVGDRSRAAGRRAHAVAAKLRSRAELGRDEA  115
            L    K + R  +  +R+  QAA G       DR++    +  ++A  LR R     ++ 
Sbjct  160  LHDGVKVITRFVSKIRRVASQAAKG-----FADRTQEVKEQILSIAKLLRRRTGQSWEDI  214

Query  116  RAAVLRFTGELAELAQAAAQEAQQLLDNAKQAVLRAKAKAAALAARGERDAVAGRRCGGL  175
             A     T ++ E+ +    EA +++                           GR     
Sbjct  215  NA----ITQKVTEITEEVCNEALEVISRVND---------------------KGRTS---  246

Query  176  VRAVND-LTELLNATRQIVAQTRQRVAGITSDGASRRVSLHDGDARPDHQG  225
            ++A+ D L++ ++ T++++ Q +Q  +G   +   R VS  D  ARP  +G
Sbjct  247  IKALKDKLSQAVDLTQKLIDQAKQVTSG-NRNIPDRIVSFFDPKARPIKKG  296


>gi|15610523|ref|NP_217904.1| transposase [Mycobacterium tuberculosis H37Rv]
 gi|15842980|ref|NP_338017.1| IS1560 transposase [Mycobacterium tuberculosis CDC1551]
 gi|31794567|ref|NP_857060.1| transposase [Mycobacterium bovis AF2122/97]
 41 more sequence titles
 
gi|121639311|ref|YP_979535.1| putative transposase [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148663250|ref|YP_001284773.1| putative transposase [Mycobacterium tuberculosis H37Ra]
 gi|148824594|ref|YP_001289348.1| transposase [Mycobacterium tuberculosis F11]
 gi|224991808|ref|YP_002646497.1| putative transposase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|254233988|ref|ZP_04927313.1| hypothetical protein TBCG_03329 [Mycobacterium tuberculosis C]
 gi|254366000|ref|ZP_04982045.1| transposase [Mycobacterium tuberculosis str. Haarlem]
 gi|289444957|ref|ZP_06434701.1| transposase [Mycobacterium tuberculosis T46]
 gi|289555663|ref|ZP_06444873.1| transposase [Mycobacterium tuberculosis KZN 605]
 gi|289571622|ref|ZP_06451849.1| transposase [Mycobacterium tuberculosis T17]
 gi|289576118|ref|ZP_06456345.1| transposase [Mycobacterium tuberculosis K85]
 gi|289747209|ref|ZP_06506587.1| transposase [Mycobacterium tuberculosis 02_1987]
 gi|289752101|ref|ZP_06511479.1| transposase [Mycobacterium tuberculosis T92]
 gi|289755516|ref|ZP_06514894.1| transposase [Mycobacterium tuberculosis EAS054]
 gi|289763568|ref|ZP_06522946.1| transposase [Mycobacterium tuberculosis GM 1503]
 gi|298526866|ref|ZP_07014275.1| transposase [Mycobacterium tuberculosis 94_M4241A]
 gi|339633392|ref|YP_004725034.1| transposase [Mycobacterium africanum GM041182]
 gi|2661666|emb|CAA15772.1| POSSIBLE TRANSPOSASE [Mycobacterium tuberculosis H37Rv]
 gi|13883319|gb|AAK47831.1| IS1560, transposase [Mycobacterium tuberculosis CDC1551]
 gi|31620164|emb|CAD95607.1| POSSIBLE TRANSPOSASE [Mycobacterium bovis AF2122/97]
 gi|121494959|emb|CAL73445.1| Possible transposase [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124599517|gb|EAY58621.1| hypothetical protein TBCG_03329 [Mycobacterium tuberculosis C]
 gi|134151513|gb|EBA43558.1| transposase [Mycobacterium tuberculosis str. Haarlem]
 gi|148507402|gb|ABQ75211.1| putative transposase [Mycobacterium tuberculosis H37Ra]
 gi|148723121|gb|ABR07746.1| transposase [Mycobacterium tuberculosis F11]
 gi|224774923|dbj|BAH27729.1| putative transposase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|289417876|gb|EFD15116.1| transposase [Mycobacterium tuberculosis T46]
 gi|289440295|gb|EFD22788.1| transposase [Mycobacterium tuberculosis KZN 605]
 gi|289540549|gb|EFD45127.1| transposase [Mycobacterium tuberculosis K85]
 gi|289545376|gb|EFD49024.1| transposase [Mycobacterium tuberculosis T17]
 gi|289687737|gb|EFD55225.1| transposase [Mycobacterium tuberculosis 02_1987]
 gi|289692688|gb|EFD60117.1| transposase [Mycobacterium tuberculosis T92]
 gi|289696103|gb|EFD63532.1| transposase [Mycobacterium tuberculosis EAS054]
 gi|289711074|gb|EFD75090.1| transposase [Mycobacterium tuberculosis GM 1503]
 gi|298496660|gb|EFI31954.1| transposase [Mycobacterium tuberculosis 94_M4241A]
 gi|326905227|gb|EGE52160.1| transposase [Mycobacterium tuberculosis W-148]
 gi|328460165|gb|AEB05588.1| transposase [Mycobacterium tuberculosis KZN 4207]
 gi|339296211|gb|AEJ48322.1| transposase [Mycobacterium tuberculosis CCDC5079]
 gi|339299811|gb|AEJ51921.1| transposase [Mycobacterium tuberculosis CCDC5180]
 gi|339332748|emb|CCC28469.1| putative transposase [Mycobacterium africanum GM041182]
 gi|341603336|emb|CCC66017.1| possible transposase [Mycobacterium bovis BCG str. Moreau RDJ]
 gi|344221226|gb|AEN01857.1| transposase [Mycobacterium tuberculosis CTRI-2]
Length=225

 Score = 56.6 bits (135),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 28/58 (49%), Positives = 39/58 (68%), Gaps = 0/58 (0%)

Query  168  AGRRCGGLVRAVNDLTELLNATRQIVAQTRQRVAGITSDGASRRVSLHDGDARPDHQG  225
            +GRR   L +A+N L +L+  T ++V Q R R+AG+  D +SR VSLHD DARP  +G
Sbjct  13   SGRRKAWLRQAINHLEKLIGRTERVVDQARSRLAGVMPDSSSRLVSLHDADARPIRKG  70


>gi|289449083|ref|ZP_06438827.1| transposase [Mycobacterium tuberculosis CPHL_A]
 gi|289422041|gb|EFD19242.1| transposase [Mycobacterium tuberculosis CPHL_A]
Length=225

 Score = 56.2 bits (134),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 28/58 (49%), Positives = 39/58 (68%), Gaps = 0/58 (0%)

Query  168  AGRRCGGLVRAVNDLTELLNATRQIVAQTRQRVAGITSDGASRRVSLHDGDARPDHQG  225
            +GRR   L +A+N L +L+  T ++V Q R R+AG+  D +SR VSLHD DARP  +G
Sbjct  13   SGRRKAWLRQAINHLEKLIGRTERVVDQARSRLAGVMPDSSSRLVSLHDADARPVRKG  70


>gi|298251049|ref|ZP_06974853.1| transposase IS4 family protein [Ktedonobacter racemifer DSM 44963]
 gi|297549053|gb|EFH82920.1| transposase IS4 family protein [Ktedonobacter racemifer DSM 44963]
Length=362

 Score = 47.4 bits (111),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 60/234 (26%), Positives = 102/234 (44%), Gaps = 34/234 (14%)

Query  1    VPHPTTLMKLTTRCGSAAIDGLNEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDLGL  60
            VP  TTL++         +  LN+ ++  A +AK+    ++R D T  + N+ +PTD GL
Sbjct  5    VPDDTTLIRWAHTIRPETVHTLNDRVVHLARQAKVTSGRKLRLDATCVQTNIHHPTDSGL  64

Query  61   LAKAMRRIAATGKR----IQAAGGAVRTRVGDRSRAAGRRAHAVAAKLRSRAELGRDEAR  116
            L  ++R ++   +R    ++    +V+     R R+A R A ++   LR + E  +DE +
Sbjct  65   LVDSVRVLSRFVQRAKPLVEGTLLSVKQACRSRVRSARRAAQSLHRLLRRKGE-QKDEQQ  123

Query  117  AAVLRFTGELAELAQAAAQEAQQLLDNAKQAVLRAKAKAAALAARGERDAVAGRRCGGLV  176
                       EL Q      QQ++  AKQ       +  ALA +             L+
Sbjct  124  ----------KELYQKLITTTQQMVKQAKQVATSLHHQPQALAQQ-------------LL  160

Query  177  RAVNDLTELLNATRQIVAQTRQRV-AGITSDGASRRVSLHDGDAR--PDHQGSA  227
             +V  +  L+    Q++ Q   RV  G       + +SLH+   R  P H+G A
Sbjct  161  CSVQQVLPLIE---QVITQASVRVLEGKKVASHEKVLSLHEPHTRAIPRHKGGA  211


>gi|298248375|ref|ZP_06972180.1| transposase IS4 family protein [Ktedonobacter racemifer DSM 44963]
 gi|297551034|gb|EFH84900.1| transposase IS4 family protein [Ktedonobacter racemifer DSM 44963]
Length=461

 Score = 47.0 bits (110),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 61/230 (27%), Positives = 96/230 (42%), Gaps = 26/230 (11%)

Query  1    VPHPTTLMKLTTRCGSAAIDGLNEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDLGL  60
            VP  TTL++         +  LN+ ++  A +AK+    ++R D T  + N+ +PTD GL
Sbjct  104  VPDDTTLIRWAHTIRPETVHTLNDRVVHLARQAKVTSGRKLRLDATCVQTNIHHPTDSGL  163

Query  61   LAKAMRRIAATGKRIQAAGGAVRTRVGDRSRAAGRRAHAVAAKLRSRAELGRDEARAAVL  120
            L   +R   A  + +Q A   V   +    +A   R  +     +S   L         L
Sbjct  164  LVDGVR---ALSRFVQRAKPLVEGTLTSVKQACRSRVRSARRAAQSLHRL---------L  211

Query  121  RFTGELAELAQAAAQEAQQLLDNAKQAVLRAKAKAAALAARGERDAVAGRRCGGLVRAVN  180
            R  GE  E  Q A     +L+   +Q V +AK  AA L+ + E  A          R + 
Sbjct  212  RRKGEQKEEQQRAL--YHKLITTTQQMVKQAKQVAANLSCQAEAPA---------QRLLL  260

Query  181  DLTELLNATRQIVAQTRQRVAGITSDGASRRV-SLHDGDAR--PDHQGSA  227
               ++L    +++ Q   RV       AS +V SL +   R  P H+G A
Sbjct  261  SAQQVLPLIERVITQAHVRVLEGKKVAASEKVLSLFEPHTRAIPRHKGGA  310


>gi|20804074|emb|CAD31277.1| PUTATIVE TRANSPOSASE FOR INSERTION ELEMENT PROTEIN [Mesorhizobium 
loti R7A]
Length=444

 Score = 46.2 bits (108),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 42/135 (32%), Positives = 62/135 (46%), Gaps = 6/135 (4%)

Query  2    PHPTTLMKLTTRCGSAAIDGLNEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDLGLL  61
            P  + L K  +   +   + +N+ LLA A   KL G   +R D+TV  A V  P+D  LL
Sbjct  102  PKKSVLHKTISAIQAPTWEEINKVLLASAGREKLEGGKVVRVDSTVTAALVHEPSDSSLL  161

Query  62   AKAMRRIAATGKRIQAAGGAVRTRVGDRSRAAGRRAHAVAAKLRSRAELGRDEARAAVLR  121
              A+R +    +   A G A+     D  RAA +R+ ++     +R    R +    +LR
Sbjct  162  WDAVRVMVRLLQHADALGSAIPWH--DHCRAAKKRSRSIEY---TRGRPKRVKHYRELLR  216

Query  122  FT-GELAELAQAAAQ  135
             T   L  L QAA Q
Sbjct  217  ITRTTLGYLQQAAEQ  231


>gi|85858589|ref|YP_460791.1| transposase [Syntrophus aciditrophicus SB]
 gi|85860148|ref|YP_462350.1| transposase [Syntrophus aciditrophicus SB]
 gi|85721680|gb|ABC76623.1| transposase [Syntrophus aciditrophicus SB]
 gi|85723239|gb|ABC78182.1| transposase [Syntrophus aciditrophicus SB]
Length=448

 Score = 46.2 bits (108),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 23/71 (33%), Positives = 37/71 (53%), Gaps = 0/71 (0%)

Query  5    TTLMKLTTRCGSAAIDGLNEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDLGLLAKA  64
            T+L+K   R G+  +  +  ALL   +E  L+   R+  DTT    N++YPTD  LL + 
Sbjct  108  TSLVKFRNRIGTEGMKEIEAALLKTWSEMGLVKARRVAVDTTAQPKNIAYPTDADLLYRI  167

Query  65   MRRIAATGKRI  75
              +I    +R+
Sbjct  168  REKIVKQVQRV  178


>gi|298241044|ref|ZP_06964851.1| transposase IS4 family protein [Ktedonobacter racemifer DSM 44963]
 gi|297554098|gb|EFH87962.1| transposase IS4 family protein [Ktedonobacter racemifer DSM 44963]
Length=461

 Score = 45.8 bits (107),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 60/230 (27%), Positives = 97/230 (43%), Gaps = 26/230 (11%)

Query  1    VPHPTTLMKLTTRCGSAAIDGLNEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDLGL  60
            VP  TTL++         +  LN+ ++  A +AK+    ++R D T  + N+ +PTD GL
Sbjct  104  VPDDTTLIRWAHTIRPETVHTLNDRVVHLARQAKVTSGRKLRLDATCVQTNIHHPTDSGL  163

Query  61   LAKAMRRIAATGKRIQAAGGAVRTRVGDRSRAAGRRAHAVAAKLRSRAELGRDEARAAVL  120
            L   +R ++   + +Q A   V   +    +A   R  +     +S   L         L
Sbjct  164  LVDGVRVLS---RFVQRAKPLVEGTLTSVKQACRSRVRSARRAAQSLHRL---------L  211

Query  121  RFTGELAELAQAAAQEAQQLLDNAKQAVLRAKAKAAALAARGERDAVAGRRCGGLVRAVN  180
            R  GE  E  Q A     +L+   +Q V +AK  AA L+ + E  A          R + 
Sbjct  212  RRKGEQKEEQQRAL--YHKLITTTQQMVKQAKQVAANLSCQAEAPA---------QRLLL  260

Query  181  DLTELLNATRQIVAQTRQRVAGITSDGASRRV-SLHDGDAR--PDHQGSA  227
               ++L    +++ Q   RV       AS +V SL +   R  P H+G A
Sbjct  261  SAQQVLPLIERVITQAHVRVLEGKKVAASEKVLSLFEPHTRAIPRHKGGA  310


>gi|298248369|ref|ZP_06972174.1| transposase IS4 family protein [Ktedonobacter racemifer DSM 44963]
 gi|297551028|gb|EFH84894.1| transposase IS4 family protein [Ktedonobacter racemifer DSM 44963]
Length=461

 Score = 45.8 bits (107),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 60/230 (27%), Positives = 98/230 (43%), Gaps = 26/230 (11%)

Query  1    VPHPTTLMKLTTRCGSAAIDGLNEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDLGL  60
            VP  TTL++         +  LN+ ++  A +AK+    ++R D T  + N+ +PTD GL
Sbjct  104  VPDDTTLIRWAHTIRPETVHTLNDRVVHLARQAKVTSGRKLRLDATCVQTNIHHPTDSGL  163

Query  61   LAKAMRRIAATGKRIQAAGGAVRTRVGDRSRAAGRRAHAVAAKLRSRAELGRDEARAAVL  120
            L  ++R ++   + +Q A   V   +    +A   R  +     +S   L         L
Sbjct  164  LVDSVRVLS---RFVQRAKPLVEGTLLSVKQACRSRVRSARRAAQSLHRL---------L  211

Query  121  RFTGELAELAQAAAQEAQQLLDNAKQAVLRAKAKAAALAARGERDAVAGRRCGGLVRAVN  180
            R  GE  E  Q A     +L+   +Q V +AK  AA L+ + E  A          R + 
Sbjct  212  RRKGEQKEEQQRAL--YHKLITTTQQMVKQAKQVAANLSCQAEAPA---------QRLLL  260

Query  181  DLTELLNATRQIVAQTRQRVAGITSDGASRRV-SLHDGDAR--PDHQGSA  227
               ++L    +++ Q   RV       AS +V SL +   R  P H+G A
Sbjct  261  SAQQVLPLIERVITQAHVRVLEGKKVAASEKVLSLFEPHTRAIPRHKGGA  310


>gi|78048272|ref|YP_364447.1| IS1478 transposase [Xanthomonas campestris pv. vesicatoria str. 
85-10]
 gi|78036702|emb|CAJ24395.1| IS1478 transposase [Xanthomonas campestris pv. vesicatoria str. 
85-10]
Length=458

 Score = 44.7 bits (104),  Expect = 0.010, Method: Compositional matrix adjust.
 Identities = 36/102 (36%), Positives = 53/102 (52%), Gaps = 8/102 (7%)

Query  4    PTTLMKLTTRCGSAAIDGL-----NEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDL  58
            P++L +   R G A ++ L     N A + KA +A+ L  +R+  DTTV    +++PTD 
Sbjct  112  PSSLTRWRQRLGEAGMEELLAHTINTAHVMKAVDAREL--SRVIVDTTVQEKAIAHPTDS  169

Query  59   GLLAKAMRRIAATGKRIQAAGGAVRTRVGD-RSRAAGRRAHA  99
            GLL  A +++    KR   A      R+G    R AGR AHA
Sbjct  170  GLLEVARKKLVLLAKRHGIALRQSYARLGPALRRKAGRYAHA  211


>gi|294624396|ref|ZP_06703089.1| IS1478 transposase [Xanthomonas fuscans subsp. aurantifolii str. 
ICPB 11122]
 gi|292601311|gb|EFF45355.1| IS1478 transposase [Xanthomonas fuscans subsp. aurantifolii str. 
ICPB 11122]
Length=328

 Score = 44.3 bits (103),  Expect = 0.014, Method: Compositional matrix adjust.
 Identities = 37/102 (37%), Positives = 52/102 (51%), Gaps = 8/102 (7%)

Query  4    PTTLMKLTTRCGSAAIDGL-----NEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDL  58
            P++L +   R G AA++ L     N A   KA + + L  +R+  DTTV    ++YPTD 
Sbjct  11   PSSLTRWRQRLGEAAMEELLAHTSNAAHAMKAVDGREL--SRVIVDTTVQEKAITYPTDS  68

Query  59   GLLAKAMRRIAATGKRIQAAGGAVRTRVG-DRSRAAGRRAHA  99
             LL  A +++    KR   A      R G + SR AGR AHA
Sbjct  69   RLLEVARKKLVRLAKRHGIALRQTYARQGPNLSRKAGRHAHA  110


>gi|2496742|sp|P55642.1|Y4RI_RHISN RecName: Full=Uncharacterized protein y4rI
Length=390

 Score = 43.1 bits (100),  Expect = 0.032, Method: Compositional matrix adjust.
 Identities = 48/172 (28%), Positives = 77/172 (45%), Gaps = 9/172 (5%)

Query  2    PHPTTLMKLTTRCGSAAIDGLNEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDLGLL  61
            P  + L K  +   +   + +N  LLA A + KL     +R D+TV  A +  P+D  LL
Sbjct  48   PKKSVLHKTISPIRAQTFEEINRVLLASARQEKLESGKVVRVDSTVTAAPIHEPSDSSLL  107

Query  62   AKAMRRIAATGKRIQAAGGAVRTRVGDRSRAAGRRAHAVAAKLRSRAELGRDEARAAVLR  121
              A+R +    ++  A G A+     D  RAA +RA A+     +R    R +    +L+
Sbjct  108  WDAVRVMVRLLQQADALGRAIPWH--DHCRAAKKRARAIEY---TRGRPKRVKHYRELLK  162

Query  122  FT-GELAELAQAAAQ---EAQQLLDNAKQAVLRAKAKAAALAARGERDAVAG  169
                 L+ L QA+ Q    A   ++  +  V R K     + A+ ER  +AG
Sbjct  163  IARTTLSYLQQASGQLLLTAGPAVELWQAQVCRYKPLVERIIAQTERRVLAG  214


>gi|188574452|ref|YP_001911381.1| ISXoo4 transposase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188518904|gb|ACD56849.1| putative ISXoo4 transposase [Xanthomonas oryzae pv. oryzae PXO99A]
Length=472

 Score = 42.4 bits (98),  Expect = 0.059, Method: Compositional matrix adjust.
 Identities = 36/102 (36%), Positives = 51/102 (50%), Gaps = 8/102 (7%)

Query  4    PTTLMKLTTRCGSAAIDGL-----NEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDL  58
            P++L +   R G A ++ L     N A   KA +A+ L  +R+  DTTV    +++PTD 
Sbjct  126  PSSLTRWRQRLGEAGMEALLAHTINTAHTMKAVDARKL--SRVIVDTTVQEKAIAHPTDS  183

Query  59   GLLAKAMRRIAATGKRIQAAGGAVRTRVGD-RSRAAGRRAHA  99
             LL  A +++    KR   A      R G   SR AGR AHA
Sbjct  184  RLLEVARKKLVLLAKRHGIALRQTYARQGPGLSRKAGRHAHA  225


>gi|116253888|ref|YP_769726.1| transposon-related protein [Rhizobium leguminosarum bv. viciae 
3841]
 gi|116254976|ref|YP_770811.1| putative transposase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115258536|emb|CAK09640.1| putative transposon-related protein [Rhizobium leguminosarum 
bv. viciae 3841]
 gi|115259624|emb|CAK11605.1| putative transposase [Rhizobium leguminosarum bv. viciae 3841]
Length=444

 Score = 42.0 bits (97),  Expect = 0.067, Method: Compositional matrix adjust.
 Identities = 39/135 (29%), Positives = 63/135 (47%), Gaps = 6/135 (4%)

Query  2    PHPTTLMKLTTRCGSAAIDGLNEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDLGLL  61
            P  + L K  +   +   + +N  LLA A + KL     +R D+TV  A +  P+D  LL
Sbjct  102  PKKSVLHKTISAIRAQTFEEINRVLLASARQEKLESGKVLRVDSTVTAALIHEPSDSSLL  161

Query  62   AKAMRRIAATGKRIQAAGGAVRTRVGDRSRAAGRRAHAVAAKLRSRAELGRDEARAAVLR  121
              A+R +    ++  A G A+     D  RAA +R+ A+     +R    R +    +L+
Sbjct  162  WDAVRVMVRLLQQADALGSAIPWH--DHRRAAKKRSRAIEY---TRGRPKRIKYYRELLK  216

Query  122  FT-GELAELAQAAAQ  135
             T   L+ L QA+ Q
Sbjct  217  ITRTTLSYLQQASEQ  231


>gi|124515153|gb|EAY56664.1| probable transposase [Leptospirillum rubarum]
Length=294

 Score = 42.0 bits (97),  Expect = 0.070, Method: Compositional matrix adjust.
 Identities = 24/78 (31%), Positives = 39/78 (50%), Gaps = 0/78 (0%)

Query  5    TTLMKLTTRCGSAAIDGLNEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDLGLLAKA  64
            +TL K   R G      +   +  +  +A  +    +R DTT    N++YPTD+GLL K+
Sbjct  104  STLCKFRKRLGPEGTQAVEAVIRDQMIQAGAIRRQVMRVDTTAMEKNIAYPTDVGLLQKS  163

Query  65   MRRIAATGKRIQAAGGAV  82
              R+    ++ +A G AV
Sbjct  164  RTRVLRLVQKAKALGVAV  181


>gi|124514920|gb|EAY56431.1| probable transposase [Leptospirillum rubarum]
Length=263

 Score = 42.0 bits (97),  Expect = 0.077, Method: Compositional matrix adjust.
 Identities = 24/78 (31%), Positives = 39/78 (50%), Gaps = 0/78 (0%)

Query  5    TTLMKLTTRCGSAAIDGLNEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDLGLLAKA  64
            +TL K   R G      +   +  +  +A  +    +R DTT    N++YPTD+GLL K+
Sbjct  104  STLCKFRKRLGPEGTQAVEAVIRDQMIQAGAIRRQVMRVDTTAMEKNIAYPTDVGLLQKS  163

Query  65   MRRIAATGKRIQAAGGAV  82
              R+    ++ +A G AV
Sbjct  164  RTRVLRLVQKAKALGVAV  181


>gi|124514574|gb|EAY56086.1| probable transposase [Leptospirillum rubarum]
Length=234

 Score = 41.6 bits (96),  Expect = 0.084, Method: Compositional matrix adjust.
 Identities = 24/78 (31%), Positives = 39/78 (50%), Gaps = 0/78 (0%)

Query  5    TTLMKLTTRCGSAAIDGLNEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDLGLLAKA  64
            +TL K   R G      +   +  +  +A  +    +R DTT    N++YPTD+GLL K+
Sbjct  104  STLCKFRKRLGPEGTQAVEAVIRDQMIQAGAIRRQVMRVDTTAMEKNIAYPTDVGLLQKS  163

Query  65   MRRIAATGKRIQAAGGAV  82
              R+    ++ +A G AV
Sbjct  164  RTRVLRLVQKAKALGVAV  181


>gi|84622499|ref|YP_449871.1| ISXoo4 transposase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|84366439|dbj|BAE67597.1| ISXoo4 transposase [Xanthomonas oryzae pv. oryzae MAFF 311018]
Length=458

 Score = 41.6 bits (96),  Expect = 0.087, Method: Compositional matrix adjust.
 Identities = 35/102 (35%), Positives = 50/102 (50%), Gaps = 8/102 (7%)

Query  4    PTTLMKLTTRCGSAAIDGL-----NEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDL  58
            P++L +   R G A ++ L     N A   KA +A+ L  +R+  DTTV    +++PTD 
Sbjct  112  PSSLTRWRQRLGEAGMEALLAHTINTAHTMKAVDAREL--SRVIVDTTVQEKAIAHPTDS  169

Query  59   GLLAKAMRRIAATGKRIQAAGGAVRTRVGD-RSRAAGRRAHA  99
             LL  A +++    KR          R G   SR AGR AHA
Sbjct  170  RLLEVARKKLVLLAKRHGIVLRQTYVRQGPGLSRKAGRHAHA  211


>gi|188579210|ref|YP_001916139.1| transposase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188523662|gb|ACD61607.1| transposase [Xanthomonas oryzae pv. oryzae PXO99A]
Length=423

 Score = 41.6 bits (96),  Expect = 0.096, Method: Compositional matrix adjust.
 Identities = 36/102 (36%), Positives = 51/102 (50%), Gaps = 8/102 (7%)

Query  4    PTTLMKLTTRCGSAAIDGL-----NEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDL  58
            P++L +   R G A ++ L     N A   KA +A+ L  +R+  DTTV    +++PTD 
Sbjct  140  PSSLTRWRQRLGEAGMEALLAHTINTAHTMKAVDARKL--SRVIVDTTVKEKAIAHPTDS  197

Query  59   GLLAKAMRRIAATGKRIQAAGGAVRTRVGD-RSRAAGRRAHA  99
             LL  A +++    KR   A      R G   SR AGR AHA
Sbjct  198  RLLEVARKKLVLLAKRHGIALRQTDARQGPGLSRKAGRYAHA  239


>gi|188577880|ref|YP_001914809.1| transposase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188522332|gb|ACD60277.1| transposase [Xanthomonas oryzae pv. oryzae PXO99A]
Length=344

 Score = 41.2 bits (95),  Expect = 0.10, Method: Compositional matrix adjust.
 Identities = 35/102 (35%), Positives = 50/102 (50%), Gaps = 8/102 (7%)

Query  4    PTTLMKLTTRCGSAAIDGL-----NEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDL  58
            P++L +   R G A ++ L     N A   KA +A+ L  +R+  DTTV    +++PTD 
Sbjct  140  PSSLTRWRQRLGEAGMEALLAHTINTAHTMKAVDAREL--SRVIVDTTVQEKAIAHPTDS  197

Query  59   GLLAKAMRRIAATGKRIQAAGGAVRTRVGD-RSRAAGRRAHA  99
             LL  A +++    KR          R G   SR AGR AHA
Sbjct  198  RLLEVARKKLVLLAKRHGIVLRQTYVRQGPGLSRKAGRHAHA  239


>gi|58583054|ref|YP_202070.1| IS1478 transposase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58427648|gb|AAW76685.1| IS1478 transposase [Xanthomonas oryzae pv. oryzae KACC10331]
Length=344

 Score = 41.2 bits (95),  Expect = 0.11, Method: Compositional matrix adjust.
 Identities = 35/102 (35%), Positives = 50/102 (50%), Gaps = 8/102 (7%)

Query  4    PTTLMKLTTRCGSAAIDGL-----NEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDL  58
            P++L +   R G A ++ L     N A   KA +A+ L  +R+  DTTV    +++PTD 
Sbjct  140  PSSLTRWRQRLGEAGMEALLAHTINTAHTMKAVDAREL--SRVIVDTTVQEKAIAHPTDS  197

Query  59   GLLAKAMRRIAATGKRIQAAGGAVRTRVGD-RSRAAGRRAHA  99
             LL  A +++    KR          R G   SR AGR AHA
Sbjct  198  RLLEVARKKLVLLAKRHGIVLRQTYVRQGPGLSRKAGRHAHA  239


>gi|124515502|gb|EAY57012.1| probable transposase [Leptospirillum rubarum]
Length=225

 Score = 41.2 bits (95),  Expect = 0.11, Method: Compositional matrix adjust.
 Identities = 24/78 (31%), Positives = 39/78 (50%), Gaps = 0/78 (0%)

Query  5    TTLMKLTTRCGSAAIDGLNEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDLGLLAKA  64
            +TL K   R G      +   +  +  +A  +    +R DTT    N++YPTD+GLL K+
Sbjct  104  STLCKFRKRLGPEGTQAVEAVIRDQMIQAGAIRRQVMRVDTTAMEKNIAYPTDVGLLQKS  163

Query  65   MRRIAATGKRIQAAGGAV  82
              R+    ++ +A G AV
Sbjct  164  RTRVLRLVQKAKALGVAV  181


>gi|206603356|gb|EDZ39836.1| Transposase [Leptospirillum sp. Group II '5-way CG']
Length=455

 Score = 41.2 bits (95),  Expect = 0.12, Method: Compositional matrix adjust.
 Identities = 24/78 (31%), Positives = 39/78 (50%), Gaps = 0/78 (0%)

Query  5    TTLMKLTTRCGSAAIDGLNEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDLGLLAKA  64
            +TL K   R G      +   +  +  +A  +    +R DTT    N++YPTD+GLL K+
Sbjct  104  STLCKFRKRLGPEGTQAVEAVIRDQMIQAGAIRRQVMRVDTTAMEKNIAYPTDVGLLQKS  163

Query  65   MRRIAATGKRIQAAGGAV  82
              R+    ++ +A G AV
Sbjct  164  RTRVLRLVQKAKALGVAV  181


>gi|124515920|gb|EAY57429.1| putative transposase [Leptospirillum rubarum]
Length=455

 Score = 41.2 bits (95),  Expect = 0.12, Method: Compositional matrix adjust.
 Identities = 24/78 (31%), Positives = 39/78 (50%), Gaps = 0/78 (0%)

Query  5    TTLMKLTTRCGSAAIDGLNEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDLGLLAKA  64
            +TL K   R G      +   +  +  +A  +    +R DTT    N++YPTD+GLL K+
Sbjct  104  STLCKFRKRLGPEGTQAVEAVIRDQMIQAGAIRRQVMRVDTTAMEKNIAYPTDVGLLQKS  163

Query  65   MRRIAATGKRIQAAGGAV  82
              R+    ++ +A G AV
Sbjct  164  RTRVLRLVQKAKALGVAV  181


>gi|124516354|gb|EAY57862.1| transposase [Leptospirillum rubarum]
Length=455

 Score = 41.2 bits (95),  Expect = 0.12, Method: Compositional matrix adjust.
 Identities = 24/78 (31%), Positives = 39/78 (50%), Gaps = 0/78 (0%)

Query  5    TTLMKLTTRCGSAAIDGLNEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDLGLLAKA  64
            +TL K   R G      +   +  +  +A  +    +R DTT    N++YPTD+GLL K+
Sbjct  104  STLCKFRKRLGPEGTQAVEAVIRDQMIQAGAIRRQVMRVDTTAMEKNIAYPTDVGLLQKS  163

Query  65   MRRIAATGKRIQAAGGAV  82
              R+    ++ +A G AV
Sbjct  164  RTRVLRLVQKAKALGVAV  181


>gi|188577561|ref|YP_001914490.1| transposase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188522013|gb|ACD59958.1| transposase [Xanthomonas oryzae pv. oryzae PXO99A]
Length=259

 Score = 41.2 bits (95),  Expect = 0.12, Method: Compositional matrix adjust.
 Identities = 35/102 (35%), Positives = 50/102 (50%), Gaps = 8/102 (7%)

Query  4    PTTLMKLTTRCGSAAIDGL-----NEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDL  58
            P++L +   R G A ++ L     N A   KA +A+ L  +R+  DTTV    +++PTD 
Sbjct  140  PSSLTRWRQRLGEAGMEALLAHTINTAHTMKAVDAREL--SRVIVDTTVQEKAIAHPTDS  197

Query  59   GLLAKAMRRIAATGKRIQAAGGAVRTRVGD-RSRAAGRRAHA  99
             LL  A +++    KR          R G   SR AGR AHA
Sbjct  198  RLLEVARKKLVLLAKRHGIVLRQTYVRQGPGLSRKAGRHAHA  239


>gi|84621823|ref|YP_449195.1| ISXoo4 transposase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|84365763|dbj|BAE66921.1| ISXoo4 transposase [Xanthomonas oryzae pv. oryzae MAFF 311018]
Length=479

 Score = 41.2 bits (95),  Expect = 0.12, Method: Compositional matrix adjust.
 Identities = 41/123 (34%), Positives = 57/123 (47%), Gaps = 16/123 (13%)

Query  4    PTTLMKLTTRCGSAAIDGL-----NEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDL  58
            P++L +   R G A ++ L     N A   KA +A+ L  +R+  DTTV    +++PTD 
Sbjct  131  PSSLTRWRQRLGEAGMEALLAHTINTAHTMKAVDARKL--SRVIVDTTVQEKAIAHPTDS  188

Query  59   GLLAKAMRRIAATGKRIQAAGGAVRTRVGD-RSRAAGRRAHAVAAKL--------RSRAE  109
             LL  A +++    KR   A      R G    R AGR AHA A +         R R  
Sbjct  189  RLLEVARKKLVLLAKRHGIALRQTYARQGPALRRKAGRHAHAHARQFKRMRKVLRRQRTI  248

Query  110  LGR  112
            LGR
Sbjct  249  LGR  251


>gi|166710019|ref|ZP_02241226.1| ISXoo4 transposase [Xanthomonas oryzae pv. oryzicola BLS256]
Length=231

 Score = 41.2 bits (95),  Expect = 0.12, Method: Compositional matrix adjust.
 Identities = 41/115 (36%), Positives = 56/115 (49%), Gaps = 9/115 (7%)

Query  4    PTTLMKLTTRCGSAAIDGL-----NEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDL  58
            P++L +   R G A ++ L     N A   KA +A+ L  +R+  DTTV    +++PTD 
Sbjct  112  PSSLTRWRQRLGEAGMEALLAHTINTAHAMKAVDAREL--SRVIVDTTVQEKAIAHPTDS  169

Query  59   GLLAKAMRRIAATGKRIQAAGGAVRTRVGD-RSRAAGRRAHAVAAKLRSRAELGR  112
             LL  A +++    KR   A      R G    R AGR AHA   K R R EL R
Sbjct  170  RLLEVARKKLVLLAKRHGIALRQTDARQGPGLRRKAGRYAHARQFK-RMRKELRR  223


>gi|84623491|ref|YP_450863.1| ISXoo4 transposase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|84367431|dbj|BAE68589.1| ISXoo4 transposase [Xanthomonas oryzae pv. oryzae MAFF 311018]
Length=477

 Score = 41.2 bits (95),  Expect = 0.13, Method: Compositional matrix adjust.
 Identities = 35/102 (35%), Positives = 50/102 (50%), Gaps = 8/102 (7%)

Query  4    PTTLMKLTTRCGSAAIDGL-----NEALLAKAAEAKLLGTNRIRADTTVARANVSYPTDL  58
            P++L +   R G A ++ L     N A   KA +A+ L  +R+  DTTV    +++PTD 
Sbjct  131  PSSLTRWRQRLGEAGMEALLAHTINTAHTMKAVDAREL--SRVIVDTTVQEKAIAHPTDS  188

Query  59   GLLAKAMRRIAATGKRIQAAGGAVRTRVGD-RSRAAGRRAHA  99
             LL  A +++    KR          R G   SR AGR AHA
Sbjct  189  RLLEVARKKLVLLAKRHGIVLRQTYVRQGPGLSRKAGRYAHA  230



Lambda     K      H
   0.317    0.128    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 294240045594


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40