BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1040c

Length=275
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15840469|ref|NP_335506.1|  PE family protein [Mycobacterium tu...   511    3e-143
gi|289573680|ref|ZP_06453907.1|  PE family protein [Mycobacterium...   509    1e-142
gi|167969300|ref|ZP_02551577.1|  PE family protein [Mycobacterium...   496    1e-138
gi|289744778|ref|ZP_06504156.1|  PE family protein [Mycobacterium...   342    5e-92 
gi|118619702|ref|YP_908034.1|  PE family protein [Mycobacterium u...   336    2e-90 
gi|183984422|ref|YP_001852713.1|  PE family protein, PE8 [Mycobac...   333    2e-89 
gi|240170331|ref|ZP_04748990.1|  PE family protein, PE8 [Mycobact...   288    5e-76 
gi|183981962|ref|YP_001850253.1|  PE family protein [Mycobacteriu...   238    9e-61 
gi|254232867|ref|ZP_04926194.1|  PE family protein [Mycobacterium...   230    2e-58 
gi|289751426|ref|ZP_06510804.1|  PE family protein [Mycobacterium...   229    3e-58 
gi|289758896|ref|ZP_06518274.1|  PE family protein [Mycobacterium...   229    5e-58 
gi|15842307|ref|NP_337344.1|  PE family protein [Mycobacterium tu...   228    8e-58 
gi|339295619|gb|AEJ47730.1|  PE family protein [Mycobacterium tub...   213    3e-53 
gi|296169912|ref|ZP_06851523.1|  PE family protein [Mycobacterium...   180    2e-43 
gi|289761176|ref|ZP_06520554.1|  LOW QUALITY PROTEIN: PE family p...   178    7e-43 
gi|212596283|gb|ACJ35566.1|  PE5 [Mycobacterium intracellulare AT...   171    1e-40 
gi|254822121|ref|ZP_05227122.1|  hypothetical protein MintA_19457...   171    2e-40 
gi|41408674|ref|NP_961510.1|  hypothetical protein MAP2576c [Myco...   155    5e-36 
gi|342862086|ref|ZP_08718729.1|  PE family protein [Mycobacterium...   150    2e-34 
gi|240173303|ref|ZP_04751961.1|  PE family protein [Mycobacterium...   147    2e-33 
gi|342861643|ref|ZP_08718289.1|  PE family protein [Mycobacterium...   125    8e-27 
gi|254365420|ref|ZP_04981465.1|  PE family protein [Mycobacterium...   124    1e-26 
gi|31793944|ref|NP_856437.1|  PE family protein [Mycobacterium bo...   124    1e-26 
gi|289444314|ref|ZP_06434058.1|  PE family protein [Mycobacterium...   124    1e-26 
gi|57117023|ref|YP_177907.1|  PE family protein [Mycobacterium tu...   122    6e-26 
gi|254822878|ref|ZP_05227879.1|  PE family protein [Mycobacterium...   112    5e-23 
gi|298526235|ref|ZP_07013644.1|  PE family protein [Mycobacterium...   112    7e-23 
gi|333989636|ref|YP_004522250.1|  PE family protein PE8 [Mycobact...   109    4e-22 
gi|254774063|ref|ZP_05215579.1|  hypothetical protein MaviaA2_052...   108    6e-22 
gi|254774223|ref|ZP_05215739.1|  PE family protein [Mycobacterium...   106    3e-21 
gi|342861310|ref|ZP_08717958.1|  hypothetical protein MCOL_20601 ...   104    2e-20 
gi|118618471|ref|YP_906803.1|  PE family protein [Mycobacterium u...   103    2e-20 
gi|183982677|ref|YP_001850968.1|  PE family protein, PE19_1 [Myco...   103    3e-20 
gi|240171995|ref|ZP_04750654.1|  PE family protein [Mycobacterium...  99.0    8e-19 
gi|254820293|ref|ZP_05225294.1|  hypothetical protein MintA_10211...  94.0    2e-17 
gi|342861305|ref|ZP_08717953.1|  hypothetical protein MCOL_20576 ...  93.6    3e-17 
gi|296164779|ref|ZP_06847341.1|  PE family protein [Mycobacterium...  93.6    3e-17 
gi|296166245|ref|ZP_06848684.1|  PE family protein [Mycobacterium...  92.0    8e-17 
gi|296170606|ref|ZP_06852185.1|  PE family protein [Mycobacterium...  91.7    1e-16 
gi|254775399|ref|ZP_05216915.1|  hypothetical protein MaviaA2_121...  90.5    2e-16 
gi|41407101|ref|NP_959937.1|  hypothetical protein MAP1003c [Myco...  89.7    4e-16 
gi|336461476|gb|EGO40346.1|  PPE-repeat containing protein [Mycob...  89.4    5e-16 
gi|212595780|gb|ACJ35522.1|  PE4 [Mycobacterium avium subsp. avium]   88.6    8e-16 
gi|183982680|ref|YP_001850971.1|  PE family protein, PE19 [Mycoba...  88.2    1e-15 
gi|240173524|ref|ZP_04752182.1|  PE family protein, PE19_1 [Mycob...  85.5    9e-15 
gi|118618467|ref|YP_906799.1|  PE family protein [Mycobacterium u...  85.1    1e-14 
gi|15841256|ref|NP_336293.1|  PE family protein [Mycobacterium tu...  84.0    2e-14 
gi|333990542|ref|YP_004523156.1|  PE-PGRS family protein [Mycobac...  81.6    1e-13 
gi|254364620|ref|ZP_04980666.1|  PE family protein [Mycobacterium...  81.3    1e-13 
gi|15841261|ref|NP_336298.1|  PE family protein [Mycobacterium tu...  79.0    7e-13 


>gi|15840469|ref|NP_335506.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|31792232|ref|NP_854725.1| PE family protein [Mycobacterium bovis AF2122/97]
 gi|57116814|ref|YP_177779.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 70 more sequence titles
 
gi|121636970|ref|YP_977193.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148660823|ref|YP_001282346.1| PE family protein [Mycobacterium tuberculosis H37Ra]
 gi|148822249|ref|YP_001287003.1| PE family protein [Mycobacterium tuberculosis F11]
 gi|224989442|ref|YP_002644129.1| PE family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253799928|ref|YP_003032929.1| PE family protein [Mycobacterium tuberculosis KZN 1435]
 gi|254231331|ref|ZP_04924658.1| PE family protein [Mycobacterium tuberculosis C]
 gi|254550025|ref|ZP_05140472.1| PE family protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|289442463|ref|ZP_06432207.1| PE family protein [Mycobacterium tuberculosis T46]
 gi|289446621|ref|ZP_06436365.1| PE family protein [Mycobacterium tuberculosis CPHL_A]
 gi|289555177|ref|ZP_06444387.1| PE family protein [Mycobacterium tuberculosis KZN 605]
 gi|289569020|ref|ZP_06449247.1| PE family protein [Mycobacterium tuberculosis T17]
 gi|289749573|ref|ZP_06508951.1| PE family protein [Mycobacterium tuberculosis T92]
 gi|289753102|ref|ZP_06512480.1| PE family protein [Mycobacterium tuberculosis EAS054]
 gi|289757124|ref|ZP_06516502.1| PE family protein [Mycobacterium tuberculosis T85]
 gi|297633569|ref|ZP_06951349.1| PE family protein [Mycobacterium tuberculosis KZN 4207]
 gi|298524537|ref|ZP_07011946.1| pe family protein [Mycobacterium tuberculosis 94_M4241A]
 gi|306775178|ref|ZP_07413515.1| PE family protein [Mycobacterium tuberculosis SUMu001]
 gi|306783740|ref|ZP_07422062.1| PE family protein [Mycobacterium tuberculosis SUMu003]
 gi|306788094|ref|ZP_07426416.1| PE family protein [Mycobacterium tuberculosis SUMu004]
 gi|306792426|ref|ZP_07430728.1| PE family protein [Mycobacterium tuberculosis SUMu005]
 gi|306802716|ref|ZP_07439384.1| PE family protein [Mycobacterium tuberculosis SUMu008]
 gi|306806895|ref|ZP_07443563.1| PE family protein [Mycobacterium tuberculosis SUMu007]
 gi|306967095|ref|ZP_07479756.1| PE family protein [Mycobacterium tuberculosis SUMu009]
 gi|306971285|ref|ZP_07483946.1| PE family protein [Mycobacterium tuberculosis SUMu010]
 gi|307079013|ref|ZP_07488183.1| PE family protein [Mycobacterium tuberculosis SUMu011]
 gi|307083575|ref|ZP_07492688.1| PE family protein [Mycobacterium tuberculosis SUMu012]
 gi|308370084|ref|ZP_07420245.2| PE family protein [Mycobacterium tuberculosis SUMu002]
 gi|308374179|ref|ZP_07435130.2| PE family protein [Mycobacterium tuberculosis SUMu006]
 gi|313657883|ref|ZP_07814763.1| PE family protein [Mycobacterium tuberculosis KZN V2475]
 gi|339631102|ref|YP_004722744.1| PE family protein [Mycobacterium africanum GM041182]
 gi|340626051|ref|YP_004744503.1| PE family protein [Mycobacterium canettii CIPT 140010059]
 gi|7478566|pir||C70625 probable PE protein - Mycobacterium tuberculosis (strain H37RV)
 gi|13880642|gb|AAK45320.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|31617820|emb|CAD93929.1| PE FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
 gi|41353636|emb|CAE55350.1| PE FAMILY PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|121492617|emb|CAL71085.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124600390|gb|EAY59400.1| PE family protein [Mycobacterium tuberculosis C]
 gi|148504975|gb|ABQ72784.1| PE family protein [Mycobacterium tuberculosis H37Ra]
 gi|148720776|gb|ABR05401.1| PE family protein [Mycobacterium tuberculosis F11]
 gi|224772555|dbj|BAH25361.1| PE family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253321431|gb|ACT26034.1| PE family protein [Mycobacterium tuberculosis KZN 1435]
 gi|289415382|gb|EFD12622.1| PE family protein [Mycobacterium tuberculosis T46]
 gi|289419579|gb|EFD16780.1| PE family protein [Mycobacterium tuberculosis CPHL_A]
 gi|289439809|gb|EFD22302.1| PE family protein [Mycobacterium tuberculosis KZN 605]
 gi|289542774|gb|EFD46422.1| PE family protein [Mycobacterium tuberculosis T17]
 gi|289690160|gb|EFD57589.1| PE family protein [Mycobacterium tuberculosis T92]
 gi|289693689|gb|EFD61118.1| PE family protein [Mycobacterium tuberculosis EAS054]
 gi|289712688|gb|EFD76700.1| PE family protein [Mycobacterium tuberculosis T85]
 gi|298494331|gb|EFI29625.1| pe family protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308216290|gb|EFO75689.1| PE family protein [Mycobacterium tuberculosis SUMu001]
 gi|308325363|gb|EFP14214.1| PE family protein [Mycobacterium tuberculosis SUMu002]
 gi|308331481|gb|EFP20332.1| PE family protein [Mycobacterium tuberculosis SUMu003]
 gi|308335288|gb|EFP24139.1| PE family protein [Mycobacterium tuberculosis SUMu004]
 gi|308339095|gb|EFP27946.1| PE family protein [Mycobacterium tuberculosis SUMu005]
 gi|308342767|gb|EFP31618.1| PE family protein [Mycobacterium tuberculosis SUMu006]
 gi|308346653|gb|EFP35504.1| PE family protein [Mycobacterium tuberculosis SUMu007]
 gi|308350568|gb|EFP39419.1| PE family protein [Mycobacterium tuberculosis SUMu008]
 gi|308355224|gb|EFP44075.1| PE family protein [Mycobacterium tuberculosis SUMu009]
 gi|308359180|gb|EFP48031.1| PE family protein [Mycobacterium tuberculosis SUMu010]
 gi|308363091|gb|EFP51942.1| PE family protein [Mycobacterium tuberculosis SUMu011]
 gi|308366743|gb|EFP55594.1| PE family protein [Mycobacterium tuberculosis SUMu012]
 gi|323720541|gb|EGB29623.1| PE family protein [Mycobacterium tuberculosis CDC1551A]
 gi|326904731|gb|EGE51664.1| PE family protein [Mycobacterium tuberculosis W-148]
 gi|328459672|gb|AEB05095.1| PE family protein [Mycobacterium tuberculosis KZN 4207]
 gi|339294040|gb|AEJ46151.1| PE family protein [Mycobacterium tuberculosis CCDC5079]
 gi|339297680|gb|AEJ49790.1| PE family protein [Mycobacterium tuberculosis CCDC5180]
 gi|339330458|emb|CCC26123.1| PE family protein [Mycobacterium africanum GM041182]
 gi|340004241|emb|CCC43382.1| PE family protein [Mycobacterium canettii CIPT 140010059]
 gi|341600986|emb|CCC63657.1| PE family protein [Mycobacterium bovis BCG str. Moreau RDJ]
 gi|344218867|gb|AEM99497.1| PE family protein [Mycobacterium tuberculosis CTRI-2]
Length=275

 Score =  511 bits (1317),  Expect = 3e-143, Method: Compositional matrix adjust.
 Identities = 275/275 (100%), Positives = 275/275 (100%), Gaps = 0/275 (0%)

Query  1    MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGT  60
            MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGT
Sbjct  1    MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGT  60

Query  61   FYQQVSAEAQAMHDMFVNTLGISAGTYGVTESLNSSAAASPLSGITGEASAIIQATTGLF  120
            FYQQVSAEAQAMHDMFVNTLGISAGTYGVTESLNSSAAASPLSGITGEASAIIQATTGLF
Sbjct  61   FYQQVSAEAQAMHDMFVNTLGISAGTYGVTESLNSSAAASPLSGITGEASAIIQATTGLF  120

Query  121  PPELSGGIGNILNIGAGNWASATSTLIGLAGGGLLPAEEAAEAASALGGEAALGELGALG  180
            PPELSGGIGNILNIGAGNWASATSTLIGLAGGGLLPAEEAAEAASALGGEAALGELGALG
Sbjct  121  PPELSGGIGNILNIGAGNWASATSTLIGLAGGGLLPAEEAAEAASALGGEAALGELGALG  180

Query  181  AAEAALGEAGIAAGLGSASAIGMLSVPPAWAGQATLVSTTSTLPGAGWTAAAPQAAAGTF  240
            AAEAALGEAGIAAGLGSASAIGMLSVPPAWAGQATLVSTTSTLPGAGWTAAAPQAAAGTF
Sbjct  181  AAEAALGEAGIAAGLGSASAIGMLSVPPAWAGQATLVSTTSTLPGAGWTAAAPQAAAGTF  240

Query  241  IPGMPGVASAARNSAGFGAPRYGVKPIVMPKPATV  275
            IPGMPGVASAARNSAGFGAPRYGVKPIVMPKPATV
Sbjct  241  IPGMPGVASAARNSAGFGAPRYGVKPIVMPKPATV  275


>gi|289573680|ref|ZP_06453907.1| PE family protein [Mycobacterium tuberculosis K85]
 gi|289538111|gb|EFD42689.1| PE family protein [Mycobacterium tuberculosis K85]
Length=275

 Score =  509 bits (1312),  Expect = 1e-142, Method: Compositional matrix adjust.
 Identities = 274/275 (99%), Positives = 274/275 (99%), Gaps = 0/275 (0%)

Query  1    MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGT  60
            MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGT
Sbjct  1    MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGT  60

Query  61   FYQQVSAEAQAMHDMFVNTLGISAGTYGVTESLNSSAAASPLSGITGEASAIIQATTGLF  120
            FYQQVSAEAQAMHDMFVNTLGISAGTYGVTESLNSSAAASPLSGITGEASAIIQATTGLF
Sbjct  61   FYQQVSAEAQAMHDMFVNTLGISAGTYGVTESLNSSAAASPLSGITGEASAIIQATTGLF  120

Query  121  PPELSGGIGNILNIGAGNWASATSTLIGLAGGGLLPAEEAAEAASALGGEAALGELGALG  180
            PPELSGGIGNILNIGAGNWASATSTLIGLAGGGLLPAEEAAEAASALGGE ALGELGALG
Sbjct  121  PPELSGGIGNILNIGAGNWASATSTLIGLAGGGLLPAEEAAEAASALGGETALGELGALG  180

Query  181  AAEAALGEAGIAAGLGSASAIGMLSVPPAWAGQATLVSTTSTLPGAGWTAAAPQAAAGTF  240
            AAEAALGEAGIAAGLGSASAIGMLSVPPAWAGQATLVSTTSTLPGAGWTAAAPQAAAGTF
Sbjct  181  AAEAALGEAGIAAGLGSASAIGMLSVPPAWAGQATLVSTTSTLPGAGWTAAAPQAAAGTF  240

Query  241  IPGMPGVASAARNSAGFGAPRYGVKPIVMPKPATV  275
            IPGMPGVASAARNSAGFGAPRYGVKPIVMPKPATV
Sbjct  241  IPGMPGVASAARNSAGFGAPRYGVKPIVMPKPATV  275


>gi|167969300|ref|ZP_02551577.1| PE family protein [Mycobacterium tuberculosis H37Ra]
 gi|294995229|ref|ZP_06800920.1| PE family protein [Mycobacterium tuberculosis 210]
 gi|297730554|ref|ZP_06959672.1| PE family protein [Mycobacterium tuberculosis KZN R506]
Length=269

 Score =  496 bits (1278),  Expect = 1e-138, Method: Compositional matrix adjust.
 Identities = 268/269 (99%), Positives = 269/269 (100%), Gaps = 0/269 (0%)

Query  7    VPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGTFYQQVS  66
            +PEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGTFYQQVS
Sbjct  1    MPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGTFYQQVS  60

Query  67   AEAQAMHDMFVNTLGISAGTYGVTESLNSSAAASPLSGITGEASAIIQATTGLFPPELSG  126
            AEAQAMHDMFVNTLGISAGTYGVTESLNSSAAASPLSGITGEASAIIQATTGLFPPELSG
Sbjct  61   AEAQAMHDMFVNTLGISAGTYGVTESLNSSAAASPLSGITGEASAIIQATTGLFPPELSG  120

Query  127  GIGNILNIGAGNWASATSTLIGLAGGGLLPAEEAAEAASALGGEAALGELGALGAAEAAL  186
            GIGNILNIGAGNWASATSTLIGLAGGGLLPAEEAAEAASALGGEAALGELGALGAAEAAL
Sbjct  121  GIGNILNIGAGNWASATSTLIGLAGGGLLPAEEAAEAASALGGEAALGELGALGAAEAAL  180

Query  187  GEAGIAAGLGSASAIGMLSVPPAWAGQATLVSTTSTLPGAGWTAAAPQAAAGTFIPGMPG  246
            GEAGIAAGLGSASAIGMLSVPPAWAGQATLVSTTSTLPGAGWTAAAPQAAAGTFIPGMPG
Sbjct  181  GEAGIAAGLGSASAIGMLSVPPAWAGQATLVSTTSTLPGAGWTAAAPQAAAGTFIPGMPG  240

Query  247  VASAARNSAGFGAPRYGVKPIVMPKPATV  275
            VASAARNSAGFGAPRYGVKPIVMPKPATV
Sbjct  241  VASAARNSAGFGAPRYGVKPIVMPKPATV  269


>gi|289744778|ref|ZP_06504156.1| PE family protein [Mycobacterium tuberculosis 02_1987]
 gi|289685306|gb|EFD52794.1| PE family protein [Mycobacterium tuberculosis 02_1987]
Length=275

 Score =  342 bits (876),  Expect = 5e-92, Method: Compositional matrix adjust.
 Identities = 264/275 (96%), Positives = 266/275 (97%), Gaps = 0/275 (0%)

Query  1    MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGT  60
            MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGT
Sbjct  1    MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGT  60

Query  61   FYQQVSAEAQAMHDMFVNTLGISAGTYGVTESLNSSAAASPLSGITGEASAIIQATTGLF  120
            FYQQVSAEAQAMHDMFVNTLGISAGTYGVTESLNSSAAASPLSGITGEASAIIQATTGLF
Sbjct  61   FYQQVSAEAQAMHDMFVNTLGISAGTYGVTESLNSSAAASPLSGITGEASAIIQATTGLF  120

Query  121  PPELSGGIGNILNIGAGNWASATSTLIGLAGGGLLPAEEAAEAASALGGEAALGELGALG  180
            PPELSGGIGNILNIGAGNWASATSTLIGLAGGGLLPAEEAAEAASALGGEAALGELGALG
Sbjct  121  PPELSGGIGNILNIGAGNWASATSTLIGLAGGGLLPAEEAAEAASALGGEAALGELGALG  180

Query  181  AAEAALGEAGIAAGLGSASAIGMLSVPPAWAGQATLVSTTSTLPGAGWTAAAPQAAAGTF  240
            AAEAALGEAGIAAGLGSASAIGMLSVPPAWAGQATLVSTTSTLPGAGWTAAAPQAAAGTF
Sbjct  181  AAEAALGEAGIAAGLGSASAIGMLSVPPAWAGQATLVSTTSTLPGAGWTAAAPQAAAGTF  240

Query  241  IPGMPGVASAARNSAGFGAPRYGVKPIVMPKPATV  275
            IPG+PGVASAARNSAGF       + IVMPKPA V
Sbjct  241  IPGLPGVASAARNSAGFCVHALRRQHIVMPKPAYV  275


>gi|118619702|ref|YP_908034.1| PE family protein [Mycobacterium ulcerans Agy99]
 gi|118571812|gb|ABL06563.1| PE family protein [Mycobacterium ulcerans Agy99]
Length=274

 Score =  336 bits (862),  Expect = 2e-90, Method: Compositional matrix adjust.
 Identities = 217/276 (79%), Positives = 235/276 (86%), Gaps = 3/276 (1%)

Query  1    MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGT  60
            MSFLKTVPEELTAAAAQLGTIG++M+AQNAAAAAPTT IAPAALDEVSALQAALFTAYGT
Sbjct  1    MSFLKTVPEELTAAAAQLGTIGSSMSAQNAAAAAPTTVIAPAALDEVSALQAALFTAYGT  60

Query  61   FYQQVSAEAQAMHDMFVNTLGISAGTYGVTESLNSSAAASPLSGITGEASAIIQATTGLF  120
            +YQQVSA+AQAMHDMFVNTLG SAGTYG TE+LNS+AAASPL GIT   S  IQ T  + 
Sbjct  61   YYQQVSADAQAMHDMFVNTLGASAGTYGATENLNSAAAASPLDGITSGISGFIQNTGSII  120

Query  121  PPELSGGIGNILNIGAGNWASATSTLIGLAGGGLLPAEEAAEAASALGGEAALGELGALG  180
            P   S  IGN+ NIG GNWASA+STLIGLAGGGLLPAEEAAEA  +LG EA LG L  LG
Sbjct  121  PDSWSNNIGNLTNIGVGNWASASSTLIGLAGGGLLPAEEAAEADVSLGAEAGLGALSELG  180

Query  181  AAEAALGEAGIAAGLGSASAIGMLSVPPAWAGQATLVSTTSTLPGAGWTAAAPQAAAGTF  240
             AEAALG A IAAG+G ASA+GMLSVPP WAG ATLVS+T+ L GAGWTAAAP AA GTF
Sbjct  181  GAEAALG-APIAAGIGGASAVGMLSVPPTWAGSATLVSSTTPLAGAGWTAAAPTAAPGTF  239

Query  241  IPGMP-GVASAARNSAGFGAPRYGVKPIVMPKPATV  275
            + G+P G+ SAARNSAGFGAPRYGVKPIVMPKPA V
Sbjct  240  M-GVPAGLGSAARNSAGFGAPRYGVKPIVMPKPAAV  274


>gi|183984422|ref|YP_001852713.1| PE family protein, PE8 [Mycobacterium marinum M]
 gi|183177748|gb|ACC42858.1| PE family protein, PE8 [Mycobacterium marinum M]
Length=274

 Score =  333 bits (854),  Expect = 2e-89, Method: Compositional matrix adjust.
 Identities = 216/276 (79%), Positives = 234/276 (85%), Gaps = 3/276 (1%)

Query  1    MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGT  60
            MSFLKTVPEELTAAAAQLGTIG++M+AQNAAAAAPTT IAPAALDEVSALQAALFTAYGT
Sbjct  1    MSFLKTVPEELTAAAAQLGTIGSSMSAQNAAAAAPTTVIAPAALDEVSALQAALFTAYGT  60

Query  61   FYQQVSAEAQAMHDMFVNTLGISAGTYGVTESLNSSAAASPLSGITGEASAIIQATTGLF  120
            +YQQVSA+AQAMHDMFVNTLG SAGTYG TE+LNS+AAASPL GIT   S  IQ    + 
Sbjct  61   YYQQVSADAQAMHDMFVNTLGASAGTYGATENLNSAAAASPLDGITSGISGFIQNAGSII  120

Query  121  PPELSGGIGNILNIGAGNWASATSTLIGLAGGGLLPAEEAAEAASALGGEAALGELGALG  180
            P   S  IGN+ NIG GNWASA+STLIGLAGGGLLPAEEAAEA  +LG EA LG L  LG
Sbjct  121  PDSWSSNIGNLTNIGVGNWASASSTLIGLAGGGLLPAEEAAEADVSLGAEAGLGALSELG  180

Query  181  AAEAALGEAGIAAGLGSASAIGMLSVPPAWAGQATLVSTTSTLPGAGWTAAAPQAAAGTF  240
             AEAALG A IAAG+G ASA+GMLSVPP WAG ATLVS+T+ L GAGWTAAAP AA GTF
Sbjct  181  GAEAALG-APIAAGIGGASAVGMLSVPPTWAGSATLVSSTTPLAGAGWTAAAPTAAPGTF  239

Query  241  IPGMP-GVASAARNSAGFGAPRYGVKPIVMPKPATV  275
            + G+P G+ SAARNSAGFGAPRYGVKPIVMPKPA V
Sbjct  240  M-GVPAGLGSAARNSAGFGAPRYGVKPIVMPKPAAV  274


>gi|240170331|ref|ZP_04748990.1| PE family protein, PE8 [Mycobacterium kansasii ATCC 12478]
Length=274

 Score =  288 bits (738),  Expect = 5e-76, Method: Compositional matrix adjust.
 Identities = 205/277 (75%), Positives = 225/277 (82%), Gaps = 5/277 (1%)

Query  1    MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGT  60
            MSFL+ VPEELTAAA QLG +G ++ AQN AAAAPTTAIAPAALDEVSALQAALFTAYGT
Sbjct  1    MSFLQIVPEELTAAATQLGALGTSLTAQNTAAAAPTTAIAPAALDEVSALQAALFTAYGT  60

Query  61   FYQQVSAEAQAMHDMFVNTLGISAGTYGVTESLNSSAAASPLSGITGEASAIIQATTGLF  120
             YQQVSAEA AMHDMFVNTLG SAGTYG TESLNS+AA SPLSG+T   S +I  TTG+ 
Sbjct  61   LYQQVSAEAAAMHDMFVNTLGFSAGTYGATESLNSAAADSPLSGLTSGISGLIGGTTGMI  120

Query  121  PPELSGGIGNILNIGAGNWASATSTLIGLAGGGLLPAEEAAEAASALGGEAALGELGALG  180
            P   +GG  N++NIG GNWASATS L+GLAGGGLLPAEEAA A S          LG LG
Sbjct  121  PDSFNGGFANMMNIGMGNWASATSNLLGLAGGGLLPAEEAAAADSF---LGGEAALGELG  177

Query  181  AAEAALGEAGIAAGLGSASAIGMLSVPPAWAGQATLVSTTS--TLPGAGWTAAAPQAAAG  238
            AAEAALG   +AAG+G ASAIG LSVPP+WAGQATLVS+T+   L GAGWTAAAPQAA G
Sbjct  178  AAEAALGGGSVAAGIGEASAIGALSVPPSWAGQATLVSSTTAGALQGAGWTAAAPQAAPG  237

Query  239  TFIPGMPGVASAARNSAGFGAPRYGVKPIVMPKPATV  275
               PG+PG+ASAARNSAGFGAPRYGVKPIVMPKP +V
Sbjct  238  MLYPGVPGLASAARNSAGFGAPRYGVKPIVMPKPVSV  274


>gi|183981962|ref|YP_001850253.1| PE family protein [Mycobacterium marinum M]
 gi|183175288|gb|ACC40398.1| PE family protein [Mycobacterium marinum M]
Length=267

 Score =  238 bits (606),  Expect = 9e-61, Method: Compositional matrix adjust.
 Identities = 162/287 (57%), Positives = 184/287 (65%), Gaps = 32/287 (11%)

Query  1    MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTA-IAPAALDEVSALQAALFTAYG  59
            MSFL T PEEL AAA +L TIGA M A+N AA APTT  + PAA DEVSALQA+LFTAYG
Sbjct  1    MSFLTTQPEELAAAAGKLETIGATMDAENVAAVAPTTTGVIPAAADEVSALQASLFTAYG  60

Query  60   TFYQQVSAEAQAMHDMFVNTLGISAGTYGVTESLNSSAAASPLSGITGEASAIIQATTGL  119
            T YQQVSAEA  ++DMFV TLG+SAGTY   E+ NSSAAASPLSGI     A   A+   
Sbjct  61   TLYQQVSAEAATLYDMFVRTLGVSAGTYAAAETANSSAAASPLSGIIDALGASTPASD--  118

Query  120  FPPELSGGIGNILNIGAGNWASATSTLIGLAGGGLLPAEEAAEAASALGGEAALGELGAL  179
                    I NI+NIGAGNWASA+S L             A         +AA G++   
Sbjct  119  --------IANIVNIGAGNWASASSDL----------LALAGGGLLPAAVQAAEGDVAQA  160

Query  180  GAAEAALGEAG---------IAAGLGSASAIGMLSVPPAWAGQATLVSTTS--TLPGAGW  228
              +  +   A          I AG+G  SA+   S  P+WAGQATLVS+TS   L GAGW
Sbjct  161  AGSAESAAAAAGAASLGEAPIVAGVGGVSAMSAASASPSWAGQATLVSSTSAGALRGAGW  220

Query  229  TAAAPQAAAGTFIPGMPGVASAARNSAGFGAPRYGVKPIVMPKPATV  275
            T  APQAA GT IPGMPG+A+A RNSAGFGAPRYGVKPIVMPKPA V
Sbjct  221  TVPAPQAAPGTVIPGMPGLAAATRNSAGFGAPRYGVKPIVMPKPAAV  267


>gi|254232867|ref|ZP_04926194.1| PE family protein [Mycobacterium tuberculosis C]
 gi|289746572|ref|ZP_06505950.1| PE family protein [Mycobacterium tuberculosis 02_1987]
 gi|124601926|gb|EAY60936.1| PE family protein [Mycobacterium tuberculosis C]
 gi|289687100|gb|EFD54588.1| PE family protein [Mycobacterium tuberculosis 02_1987]
 gi|326904384|gb|EGE51317.1| PE family protein [Mycobacterium tuberculosis W-148]
Length=275

 Score =  230 bits (586),  Expect = 2e-58, Method: Compositional matrix adjust.
 Identities = 183/280 (66%), Positives = 204/280 (73%), Gaps = 13/280 (4%)

Query  1    MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTA-IAPAALDEVSALQAALFTAYG  59
            MSFL T PEEL AAA +L TIG+AM AQNAAAAAPTT  + PAA DE+S LQA LFTAYG
Sbjct  1    MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60

Query  60   TFYQQVSAEAQAMHDMFVNTLGISAGTYGVTESLNSSAAASPLSGITGEASAIIQATTGL  119
            T YQQVSAEA A++D+FV TLG+SAGTY  TE+ NSSAAASPLSGI    ++I+ +T G 
Sbjct  61   TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGI----ASILGSTPGK  116

Query  120  FPPELSGGIGNILNIGAGNWASATSTLIGLAGGGLLPAEEAAEAASALGGEAALGELGAL  179
             P  +S  I NI NIGAGNWASA S L+GLA GGLL       A       A L ELGA 
Sbjct  117  VPSWISD-IANIFNIGAGNWASAASDLLGLASGGLL-PAAEEAALEEGLEGAGLSELGAA  174

Query  180  GAAEAAL------GEAGIAAGLGSASAIGMLSVPPAWAGQATLVSTTSTLPGAGWTAAAP  233
             AA          G A +AAGL  AS+IG LSVPP+WAGQA LVS+TSTL GAGWT AAP
Sbjct  175  EAAVGEAPIAAGLGAAPLAAGLSRASSIGALSVPPSWAGQANLVSSTSTLQGAGWTTAAP  234

Query  234  QAAAGTFIPGMPGVASAARNSAGFGAPRYGVKPIVMPKPA  273
              AAGT IPGMPG+ASA R+SAGFGAPRYG KPIVMPKPA
Sbjct  235  HGAAGTVIPGMPGLASATRSSAGFGAPRYGAKPIVMPKPA  274


>gi|289751426|ref|ZP_06510804.1| PE family protein [Mycobacterium tuberculosis T92]
 gi|289692013|gb|EFD59442.1| PE family protein [Mycobacterium tuberculosis T92]
Length=275

 Score =  229 bits (584),  Expect = 3e-58, Method: Compositional matrix adjust.
 Identities = 182/280 (65%), Positives = 204/280 (73%), Gaps = 13/280 (4%)

Query  1    MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTA-IAPAALDEVSALQAALFTAYG  59
            MSFL T PEEL AAA +  TIG+AM AQNAAAAAPTT  + PAA DE+S LQA+LFTAYG
Sbjct  1    MSFLTTQPEELAAAAGKFETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQASLFTAYG  60

Query  60   TFYQQVSAEAQAMHDMFVNTLGISAGTYGVTESLNSSAAASPLSGITGEASAIIQATTGL  119
            T YQQVSAEA A++D+FV TLG+SAGTY  TE+ NSSAAASPLSGI    ++I+ +T G 
Sbjct  61   TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGI----ASILGSTPGK  116

Query  120  FPPELSGGIGNILNIGAGNWASATSTLIGLAGGGLLPAEEAAEAASALGGEAALGELGAL  179
             P  +S  I NI NIGAGNWASA S L+GLA GGLL       A       A L ELGA 
Sbjct  117  VPSWISD-IANIFNIGAGNWASAASDLLGLASGGLL-PAAEEAALEEGLEGAGLSELGAA  174

Query  180  GAAEAAL------GEAGIAAGLGSASAIGMLSVPPAWAGQATLVSTTSTLPGAGWTAAAP  233
             AA          G A +AAGL  AS+IG LSVPP+WAGQA LVS+TSTL GAGWT AAP
Sbjct  175  EAAVGEAPIAAGLGAAPLAAGLSRASSIGALSVPPSWAGQANLVSSTSTLQGAGWTPAAP  234

Query  234  QAAAGTFIPGMPGVASAARNSAGFGAPRYGVKPIVMPKPA  273
              AAGT IPGMPG+ASA R+SAGFGAPRYG KPIVMPKPA
Sbjct  235  HGAAGTVIPGMPGLASATRSSAGFGAPRYGAKPIVMPKPA  274


>gi|289758896|ref|ZP_06518274.1| PE family protein [Mycobacterium tuberculosis T85]
 gi|294994138|ref|ZP_06799829.1| PE family protein [Mycobacterium tuberculosis 210]
 gi|289714460|gb|EFD78472.1| PE family protein [Mycobacterium tuberculosis T85]
 gi|339299236|gb|AEJ51346.1| PE family protein [Mycobacterium tuberculosis CCDC5180]
Length=275

 Score =  229 bits (583),  Expect = 5e-58, Method: Compositional matrix adjust.
 Identities = 182/280 (65%), Positives = 203/280 (73%), Gaps = 13/280 (4%)

Query  1    MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTA-IAPAALDEVSALQAALFTAYG  59
            MSFL T PEEL AAA +L TIG+AM AQNAAAAAPTT  + PAA DE+S LQA LFTAYG
Sbjct  1    MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60

Query  60   TFYQQVSAEAQAMHDMFVNTLGISAGTYGVTESLNSSAAASPLSGITGEASAIIQATTGL  119
            T YQQVSAEA A++D+FV TLG+SAGTY  TE+ NSSAAASPLSGI    ++I+ +T G 
Sbjct  61   TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGI----ASILGSTPGK  116

Query  120  FPPELSGGIGNILNIGAGNWASATSTLIGLAGGGLLPAEEAAEAASALGGEAALGELGAL  179
             P  +S  I NI NIGAGNW SA S L+GLA GGLL       A       A L ELGA 
Sbjct  117  VPSWISD-IANIFNIGAGNWVSAASDLLGLASGGLL-PAAEEAALEEGLEGAGLSELGAA  174

Query  180  GAAEAAL------GEAGIAAGLGSASAIGMLSVPPAWAGQATLVSTTSTLPGAGWTAAAP  233
             AA          G A +AAGL  AS+IG LSVPP+WAGQA LVS+TSTL GAGWT AAP
Sbjct  175  EAAVGEAPIAAGLGAAPLAAGLSRASSIGALSVPPSWAGQANLVSSTSTLQGAGWTTAAP  234

Query  234  QAAAGTFIPGMPGVASAARNSAGFGAPRYGVKPIVMPKPA  273
              AAGT IPGMPG+ASA R+SAGFGAPRYG KPIVMPKPA
Sbjct  235  HGAAGTVIPGMPGLASATRSSAGFGAPRYGAKPIVMPKPA  274


>gi|15842307|ref|NP_337344.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|13882602|gb|AAK47158.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|323718616|gb|EGB27780.1| PE family protein [Mycobacterium tuberculosis CDC1551A]
Length=275

 Score =  228 bits (581),  Expect = 8e-58, Method: Compositional matrix adjust.
 Identities = 182/280 (65%), Positives = 203/280 (73%), Gaps = 13/280 (4%)

Query  1    MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTA-IAPAALDEVSALQAALFTAYG  59
            MSFL T PEEL AAA +L TIG+AM AQNAAAAAPTT  + PAA DE+S  QA LFTAYG
Sbjct  1    MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVRQAPLFTAYG  60

Query  60   TFYQQVSAEAQAMHDMFVNTLGISAGTYGVTESLNSSAAASPLSGITGEASAIIQATTGL  119
            T YQQVSAEA A++D+FV TLG+SAGTY  TE+ NSSAAASPLSGI    ++I+ +T G 
Sbjct  61   TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGI----ASILGSTPGK  116

Query  120  FPPELSGGIGNILNIGAGNWASATSTLIGLAGGGLLPAEEAAEAASALGGEAALGELGAL  179
             P  +S  I NI NIGAGNWASA S L+GLA GGLL       A       A L ELGA 
Sbjct  117  VPSWISD-IANIFNIGAGNWASAASDLLGLASGGLL-PAAEEAALEEGLEGAGLSELGAA  174

Query  180  GAAEAAL------GEAGIAAGLGSASAIGMLSVPPAWAGQATLVSTTSTLPGAGWTAAAP  233
             AA          G A +AAGL  AS+IG LSVPP+WAGQA LVS+TSTL GAGWT AAP
Sbjct  175  EAAVGEAPIAAGLGAAPLAAGLSRASSIGALSVPPSWAGQANLVSSTSTLQGAGWTTAAP  234

Query  234  QAAAGTFIPGMPGVASAARNSAGFGAPRYGVKPIVMPKPA  273
              AAGT IPGMPG+ASA R+SAGFGAPRYG KPIVMPKPA
Sbjct  235  HGAAGTVIPGMPGLASATRSSAGFGAPRYGAKPIVMPKPA  274


>gi|339295619|gb|AEJ47730.1| PE family protein [Mycobacterium tuberculosis CCDC5079]
Length=265

 Score =  213 bits (541),  Expect = 3e-53, Method: Compositional matrix adjust.
 Identities = 174/270 (65%), Positives = 196/270 (73%), Gaps = 13/270 (4%)

Query  11   LTAAAAQLGTIGAAMAAQNAAAAAPTTA-IAPAALDEVSALQAALFTAYGTFYQQVSAEA  69
            + AAA +L TIG+AM AQNAAAAAPTT  + PAA DE+S LQA LFTAYGT YQQVSAEA
Sbjct  1    MAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYGTLYQQVSAEA  60

Query  70   QAMHDMFVNTLGISAGTYGVTESLNSSAAASPLSGITGEASAIIQATTGLFPPELSGGIG  129
             A++D+FV TLG+SAGTY  TE+ NSSAAASPLSGI    ++I+ +T G  P  +S  I 
Sbjct  61   AAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGI----ASILGSTPGKVPSWISD-IA  115

Query  130  NILNIGAGNWASATSTLIGLAGGGLLPAEEAAEAASALGGEAALGELGALGAAEAAL---  186
            NI NIGAGNWASA S L+GLA GGLL       A       A L ELGA  AA       
Sbjct  116  NIFNIGAGNWASAASDLLGLASGGLL-PAAEEAALEEGLEGAGLSELGAAEAAVGEAPIA  174

Query  187  ---GEAGIAAGLGSASAIGMLSVPPAWAGQATLVSTTSTLPGAGWTAAAPQAAAGTFIPG  243
               G A +AAGL  AS+IG LSVPP+WAGQA LVS+TSTL GAGWT AAP  AAGT IPG
Sbjct  175  AGLGAAPLAAGLSRASSIGALSVPPSWAGQANLVSSTSTLQGAGWTTAAPHGAAGTVIPG  234

Query  244  MPGVASAARNSAGFGAPRYGVKPIVMPKPA  273
            MPG+ASA R+SAGFGAPRYG KPIVMPKPA
Sbjct  235  MPGLASATRSSAGFGAPRYGAKPIVMPKPA  264


>gi|296169912|ref|ZP_06851523.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295895424|gb|EFG75127.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=297

 Score =  180 bits (457),  Expect = 2e-43, Method: Compositional matrix adjust.
 Identities = 153/297 (52%), Positives = 181/297 (61%), Gaps = 22/297 (7%)

Query  1    MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGT  60
            MSFL T  EE+ AA   L  I   +AAQNA AA+ TT IAPAA D VSA QAA+F+AYGT
Sbjct  1    MSFLTTQTEEMLAAEQLLSGINTNLAAQNAGAASATTVIAPAAADPVSAQQAAIFSAYGT  60

Query  61   FYQQVSAEAQAMHDMFVNTLGISAGTYGVTESLNSS-------------AAASPLSGITG  107
             YQ ++ EAQA+ + +  TLGIS+G+YG TE++N+S             AAA+P +    
Sbjct  61   QYQAIATEAQALLEQYAQTLGISSGSYGDTEAINASQALLSSAASPAAQAAATPGNTPLD  120

Query  108  EASAIIQATTGLFPPELSGGI-------GNILNIGAGNWASATSTLIGLAGGGLLPAEEA  160
              S ++ +T     P + GGI        NI NIG GNWASA S L+GLAGGGLL    A
Sbjct  121  YLSWLLGSTGNNTNPAMLGGIFGLSSNGANIGNIGFGNWASAGSDLLGLAGGGLLDTSAA  180

Query  161  AEAASALGGEAALGELGALGAAEAALGEAGIAAGLGSASAIGMLSVPPAWAGQATLVSTT  220
              A SA            +     A   A   A  G A+ +G LSVPP+WAG AT V  T
Sbjct  181  DAAGSAADAAGLADVTTPMAGGGMAGMGAAPMAAAGQATMVGKLSVPPSWAGPATPVVGT  240

Query  221  STLP--GAGWTAAAPQAAAGTFIPGMPGVASAARNSAGFGAPRYGVKPIVMPKPATV  275
            S  P    GWTAAAPQA  GT IPGMPG+ +AARNSAGFGAPRYGVKPIVMPKPATV
Sbjct  241  SAAPLQTVGWTAAAPQAGTGTVIPGMPGMGAAARNSAGFGAPRYGVKPIVMPKPATV  297


>gi|289761176|ref|ZP_06520554.1| LOW QUALITY PROTEIN: PE family protein [Mycobacterium tuberculosis 
GM 1503]
 gi|289708682|gb|EFD72698.1| LOW QUALITY PROTEIN: PE family protein [Mycobacterium tuberculosis 
GM 1503]
Length=278

 Score =  178 bits (452),  Expect = 7e-43, Method: Compositional matrix adjust.
 Identities = 118/142 (84%), Positives = 121/142 (86%), Gaps = 2/142 (1%)

Query  1    MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGT  60
            MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGT
Sbjct  1    MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGT  60

Query  61   FYQQVSAEAQAMHDMFVNTLGISAGTYGVTESLNSSAAASPLSGITGEASAIIQATTG--  118
            FYQQVSAEAQAMHDMFVNTLGISAGTYGVTESLNSSAAASPLSGITGE+     +  G  
Sbjct  61   FYQQVSAEAQAMHDMFVNTLGISAGTYGVTESLNSSAAASPLSGITGESVGHHPSDDGGC  120

Query  119  LFPPELSGGIGNILNIGAGNWA  140
            LF P     +      GAGNWA
Sbjct  121  LFRPNSRVALATSSTSGAGNWA  142


>gi|212596283|gb|ACJ35566.1| PE5 [Mycobacterium intracellulare ATCC 13950]
Length=265

 Score =  171 bits (433),  Expect = 1e-40, Method: Compositional matrix adjust.
 Identities = 135/282 (48%), Positives = 170/282 (61%), Gaps = 27/282 (9%)

Query  1    MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGT  60
            MSF+ T PE L AAA+ L  +G++M AQNAAAAAPTT+IAPAA DEVSALQAA F+AYG 
Sbjct  1    MSFVTTRPEALMAAASMLEALGSSMDAQNAAAAAPTTSIAPAAADEVSALQAAQFSAYGA  60

Query  61   FYQQVSAEAQAMHDMFVNTLGISAGTYGVTESLNS-SAAASPLSGITGEASAIIQ-----  114
            +YQQVSA+A+A+H   VN L  SAG+YG TE+ N  + AAS LS +    +A        
Sbjct  61   WYQQVSAQAKAIHQTMVNNLDTSAGSYGETETANRVTTAASSLSPLAASPTAAADPPPAG  120

Query  115  ATTGLFPPELSGGIGNILNIGAGNWASATSTLIGLAGGGLLPAEEAAEAASALGGEAALG  174
            +TT      L  GIG   N+GA     A S  I L  G   P   AA   +   G  +  
Sbjct  121  STT------LGTGIGWGQNVGA-----AASDFITLGEGQFAPVTGAAGIPNFTPGLTSA-  168

Query  175  ELGALGAAEAALGEAGIAAGLGSASAIGMLSVPPAWA--GQATLVSTTSTLPGAGWTAAA  232
                  +A A    A + A +G   AIG LSVPP+WA  G  ++ +T + L GAG+T+AA
Sbjct  169  ------SAPAPAAPAPVLASMGRGPAIGALSVPPSWAAGGVPSVNATPTQLVGAGFTSAA  222

Query  233  PQAAAGTFIP-GMPGVASAARNSAGFGAPRYGVKPIVMPKPA  273
            P AA  T +P G+P +A++ R   G GAPRYGVKP VMPKPA
Sbjct  223  PHAAPVTTVPGGLPSMATSGRGGYGLGAPRYGVKPTVMPKPA  264


>gi|254822121|ref|ZP_05227122.1| hypothetical protein MintA_19457 [Mycobacterium intracellulare 
ATCC 13950]
 gi|212596272|gb|ACJ35565.1| PE4 [Mycobacterium intracellulare ATCC 13950]
Length=293

 Score =  171 bits (432),  Expect = 2e-40, Method: Compositional matrix adjust.
 Identities = 147/299 (50%), Positives = 180/299 (61%), Gaps = 30/299 (10%)

Query  1    MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGT  60
            MSFL T  EE+ AA   L  I + +AAQN  AA+ TT IAPAA D VSA QAA+F+AYG 
Sbjct  1    MSFLTTQTEEMLAAETLLSGINSNLAAQNTGAASATTVIAPAAADPVSAQQAAIFSAYGA  60

Query  61   FYQQVSAEAQAMHDMFVNTLGISAGTYGVTESLNSSAAA-----------------SPLS  103
             YQ ++AEAQA  + +  TLGIS+ +YG TE++N+S AA                 +P+ 
Sbjct  61   QYQAIAAEAQAQLEKYSQTLGISSNSYGDTEAVNASQAAIQALDAADSGTSSGVGSNPID  120

Query  104  ------GITGEASAIIQATTGLFPPELSGGIGNILNIGAGNWASATSTLIGLAGGGLLPA  157
                  G  G+AS  +    G+F   LS    NI NIG GNW+SATS L+GLAGGGLL  
Sbjct  121  ILAWLLGYNGQASGGLG---GIF--GLSSNTANIGNIGIGNWSSATSNLLGLAGGGLLDT  175

Query  158  EEAAEAASALGGEAALGELGALGAAEAALGEAGIAAGLGSASAIGMLSVPPAWAGQATLV  217
               A AA+A          G      A +G    AA +G A+ +  LSVPP+WAG   +V
Sbjct  176  SADAGAAAAADLATDTAPAGVGVGGVAGVGAM-PAAAMGQATVVNKLSVPPSWAGSTPVV  234

Query  218  -STTSTLPGAGWTAAAPQAAAGTFIPGMPGVASAARNSAGFGAPRYGVKPIVMPKPATV  275
             S+ + L   GWTAAAPQ  AGT +PGMPGV +  RNSAGFGAPRYGVKPIVMPKPA V
Sbjct  235  GSSAAPLQTVGWTAAAPQTGAGTVVPGMPGVGAMGRNSAGFGAPRYGVKPIVMPKPAAV  293


>gi|41408674|ref|NP_961510.1| hypothetical protein MAP2576c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118463687|ref|YP_880590.1| PE family protein [Mycobacterium avium 104]
 gi|41397032|gb|AAS04893.1| PE_6 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118164974|gb|ABK65871.1| PE family protein [Mycobacterium avium 104]
 gi|212595794|gb|ACJ35523.1| PE5 [Mycobacterium avium subsp. avium]
Length=278

 Score =  155 bits (393),  Expect = 5e-36, Method: Compositional matrix adjust.
 Identities = 134/282 (48%), Positives = 167/282 (60%), Gaps = 14/282 (4%)

Query  1    MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGT  60
            MSF+ T PE L A A+ L  +G++M AQNAAAAAPTT+IAPAA DEVSALQAA F+AYGT
Sbjct  1    MSFVTTRPEALLAVASMLEGLGSSMDAQNAAAAAPTTSIAPAAADEVSALQAAQFSAYGT  60

Query  61   FYQQVSAEAQAMHDMFVNTLGISAGTYGVTE---SLNSSAAASPLSGITGEASAIIQATT  117
            +YQQVSA+A+A+H   V  L  +A +YG TE    +N+SAAA     + G A  +I    
Sbjct  61   WYQQVSAQAKAIHQTLVQNLDTNADSYGATEAANRVNTSAAA-----LQGLAPNVIPNAA  115

Query  118  GLFPPELSGGIGNILNIG-AGNWASATSTLIGLAGGGLLPAEEAAEAASALGG-EAALGE  175
                P  +G      +IG A N  +A S  I L  G   P   AA   +   G  AA   
Sbjct  116  PAADPPPAGTTSLGTSIGWAQNVGAAASDFITLGEGQFAPVPGAAGIPNFNPGLTAATTA  175

Query  176  LGALGAAEAALGEAGIAAGLGSASAIGMLSVPPAWA--GQATLVSTT-STLPGAGWTAAA  232
                 AA AA   A + A +G   +IG LSVPP+WA  G A   + T + L GAG+T+AA
Sbjct  176  GPPAPAAPAAAAGAPVLASMGRGPSIGGLSVPPSWAPGGVAPAANATPAQLVGAGFTSAA  235

Query  233  PQAAAGTFIP-GMPGVASAARNSAGFGAPRYGVKPIVMPKPA  273
            P  A  T +P G+P +A+A R   G GAPRYGVKP VMPKPA
Sbjct  236  PDTAPVTAVPGGVPSMATAGRGGYGLGAPRYGVKPTVMPKPA  277


>gi|342862086|ref|ZP_08718729.1| PE family protein [Mycobacterium colombiense CECT 3035]
 gi|342130390|gb|EGT83705.1| PE family protein [Mycobacterium colombiense CECT 3035]
Length=268

 Score =  150 bits (380),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 123/275 (45%), Positives = 156/275 (57%), Gaps = 12/275 (4%)

Query  1    MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGT  60
            MSF+ T PE L A A+ L  +G++M AQNAAAAAPTT+IAPAA DEVSALQAA F+AYG 
Sbjct  1    MSFVTTRPEALLATASMLQALGSSMDAQNAAAAAPTTSIAPAAADEVSALQAAQFSAYGA  60

Query  61   FYQQVSAEAQAMHDMFVNTLGISAGTYGVTESLNSSAAASPLSGITGEASAIIQATTGLF  120
            +YQQVSA+A+A+H   V  L  +AG+YG TE+ N    ++        A+A         
Sbjct  61   WYQQVSAQAKAVHQTMVANLNSNAGSYGETETANKVTTSAAALQQVAPAAAAADPPP---  117

Query  121  PPELSGGIGNILNIGAGNWASATSTLIGLAGGGLLPAEEAAEAASALGGEAALGELGALG  180
                   +G  +  G  N  SA S  I L  G   P    A        + A G L +  
Sbjct  118  ---GDAALGTEIEWGQ-NVGSAASDFITLGEGQFAPV-PGASGIPNFNPDLAAG-LTSAA  171

Query  181  AAEAALGEAGIAAGLGSASAIGMLSVPPAWA--GQATLVSTTSTLPGAGWTAAAPQAAAG  238
             A A    A + A +G   +IG LSVPP+WA  G      T +TL GAG+TAAAP +A+ 
Sbjct  172  PASAPTPAAPVLASVGQGPSIGALSVPPSWAAGGVPAATPTAATLTGAGFTAAAPHSASV  231

Query  239  TFIP-GMPGVASAARNSAGFGAPRYGVKPIVMPKP  272
            T IP G+P +A+  R   G GAPRYGVKP+VMP P
Sbjct  232  TTIPGGLPSMATTGRGGYGLGAPRYGVKPVVMPTP  266


>gi|240173303|ref|ZP_04751961.1| PE family protein [Mycobacterium kansasii ATCC 12478]
Length=146

 Score =  147 bits (371),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 92/155 (60%), Positives = 106/155 (69%), Gaps = 13/155 (8%)

Query  1    MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGT  60
            MSFL T P+EL AAA +L TIGA M A+N AAA PTT + PAA DEVS LQA++FTAYG+
Sbjct  1    MSFLTTQPDELAAAAGKLQTIGATMEAENVAAAVPTTGVIPAAADEVSMLQASMFTAYGS  60

Query  61   FYQQVSAEAQAMHDMFVNTLGISAGTYGVTESLNSSAAASPLSGITGEASAIIQATTGLF  120
             YQQ+SAEA AM++M VNTLG+SAGTY   E+ NSSAAASPLS I G           L 
Sbjct  61   LYQQISAEAAAMYEMLVNTLGVSAGTYAAAEAANSSAAASPLSDILG----------ALL  110

Query  121  PPELSGGI---GNILNIGAGNWASATSTLIGLAGG  152
            P +  G I    NI NIG GNWASA S L+ L  G
Sbjct  111  PSQTPGWITDLANIFNIGTGNWASAASDLLALGSG  145


>gi|342861643|ref|ZP_08718289.1| PE family protein [Mycobacterium colombiense CECT 3035]
 gi|342130777|gb|EGT84073.1| PE family protein [Mycobacterium colombiense CECT 3035]
Length=291

 Score =  125 bits (314),  Expect = 8e-27, Method: Compositional matrix adjust.
 Identities = 120/261 (46%), Positives = 154/261 (60%), Gaps = 34/261 (13%)

Query  45   DEVSALQAALFTAYGTFYQQVSAEAQAMHDMFVNTLGISAGTYGVTESLNSSAAA-----  99
            D VSA Q+ALF+ YGT YQ ++A+AQA  + + +TLGIS+ +YG TE++N++ A      
Sbjct  35   DPVSAQQSALFSTYGTTYQTLAAQAQAQLEQYASTLGISSNSYGDTETVNAAQAVLSNSN  94

Query  100  ---------------SPLSGITGEASAIIQATTGLFPPELSGGI-------GNILNIGAG  137
                           +PL  +    S ++ +T     P + GGI        NILNIGAG
Sbjct  95   LAASPLAAAAATPSNTPLDFL----SYLLGSTGNGTNPSMLGGIFGLSSNGANILNIGAG  150

Query  138  NWASATSTLIGLAGGGLLPAEEAAEAASALGGEAALGELGALGAAE-AALGEAGIAAGLG  196
            NWASA S L+G+AGGGLLPA  +    +A    AA         +   A   A  AA +G
Sbjct  151  NWASAGSDLLGMAGGGLLPAAASDTGDAAAAAGAADLAASTTPVSPGVAGMGAMPAAAMG  210

Query  197  SASAIGMLSVPPAWAGQATLVSTTSTLP--GAGWTAAAPQAAAGTFIPGMPGVASAARNS  254
             A+ +  LSVPP WAG  T V+ T   P    GWTAAAPQA AGT +PGMPG+ + ARNS
Sbjct  211  QATMVSKLSVPPTWAGAVTPVAGTVAAPLQTVGWTAAAPQAGAGTVVPGMPGMGAMARNS  270

Query  255  AGFGAPRYGVKPIVMPKPATV  275
            AGFGAPRYGVKPIVMPK +T+
Sbjct  271  AGFGAPRYGVKPIVMPKASTL  291


>gi|254365420|ref|ZP_04981465.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
 gi|134150933|gb|EBA42978.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
Length=275

 Score =  124 bits (312),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 62/76 (82%), Positives = 67/76 (89%), Gaps = 0/76 (0%)

Query  198  ASAIGMLSVPPAWAGQATLVSTTSTLPGAGWTAAAPQAAAGTFIPGMPGVASAARNSAGF  257
            AS+IG LSVPP+WAGQA LVS+TSTL GAGWT AAP  AAGT IPGMPG+ASA R+SAGF
Sbjct  199  ASSIGALSVPPSWAGQANLVSSTSTLQGAGWTTAAPHGAAGTVIPGMPGLASATRSSAGF  258

Query  258  GAPRYGVKPIVMPKPA  273
            GAPRYG KPIVMPKPA
Sbjct  259  GAPRYGAKPIVMPKPA  274


>gi|31793944|ref|NP_856437.1| PE family protein [Mycobacterium bovis AF2122/97]
 gi|121638648|ref|YP_978872.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224991140|ref|YP_002645829.1| PE family protein [Mycobacterium bovis BCG str. Tokyo 172]
 14 more sequence titles
 
gi|289448426|ref|ZP_06438170.1| PE family protein [Mycobacterium tuberculosis CPHL_A]
 gi|289575467|ref|ZP_06455694.1| PE family protein [Mycobacterium tuberculosis K85]
 gi|289754875|ref|ZP_06514253.1| PE family protein [Mycobacterium tuberculosis EAS054]
 gi|339632781|ref|YP_004724423.1| PE family protein [Mycobacterium africanum GM041182]
 gi|340627771|ref|YP_004746223.1| PE family protein [Mycobacterium canettii CIPT 140010059]
 gi|31619538|emb|CAD94976.1| PE FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121494296|emb|CAL72774.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224774255|dbj|BAH27061.1| PE family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|289421384|gb|EFD18585.1| PE family protein [Mycobacterium tuberculosis CPHL_A]
 gi|289539898|gb|EFD44476.1| PE family protein [Mycobacterium tuberculosis K85]
 gi|289695462|gb|EFD62891.1| PE family protein [Mycobacterium tuberculosis EAS054]
 gi|339332137|emb|CCC27844.1| PE family protein [Mycobacterium africanum GM041182]
 gi|340005961|emb|CCC45128.1| PE family protein [Mycobacterium canettii CIPT 140010059]
 gi|341602686|emb|CCC65362.1| PE family protein [Mycobacterium bovis BCG str. Moreau RDJ]
Length=275

 Score =  124 bits (312),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 62/76 (82%), Positives = 67/76 (89%), Gaps = 0/76 (0%)

Query  198  ASAIGMLSVPPAWAGQATLVSTTSTLPGAGWTAAAPQAAAGTFIPGMPGVASAARNSAGF  257
            AS+IG LSVPP+WAGQA LVS+TSTL GAGWT AAP  AAGT IPGMPG+ASA R+SAGF
Sbjct  199  ASSIGALSVPPSWAGQANLVSSTSTLQGAGWTTAAPHGAAGTVIPGMPGLASATRSSAGF  258

Query  258  GAPRYGVKPIVMPKPA  273
            GAPRYG KPIVMPKPA
Sbjct  259  GAPRYGAKPIVMPKPA  274


>gi|289444314|ref|ZP_06434058.1| PE family protein [Mycobacterium tuberculosis T46]
 gi|289570948|ref|ZP_06451175.1| PE family protein [Mycobacterium tuberculosis T17]
 gi|289417233|gb|EFD14473.1| PE family protein [Mycobacterium tuberculosis T46]
 gi|289544702|gb|EFD48350.1| PE family protein [Mycobacterium tuberculosis T17]
Length=275

 Score =  124 bits (311),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 62/76 (82%), Positives = 67/76 (89%), Gaps = 0/76 (0%)

Query  198  ASAIGMLSVPPAWAGQATLVSTTSTLPGAGWTAAAPQAAAGTFIPGMPGVASAARNSAGF  257
            AS+IG LSVPP+WAGQA LVS+TSTL GAGWT AAP  AAGT IPGMPG+ASA R+SAGF
Sbjct  199  ASSIGALSVPPSWAGQANLVSSTSTLQGAGWTTAAPHGAAGTVIPGMPGLASATRSSAGF  258

Query  258  GAPRYGVKPIVMPKPA  273
            GAPRYG KPIVMPKPA
Sbjct  259  GAPRYGAKPIVMPKPA  274


>gi|57117023|ref|YP_177907.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 gi|148662611|ref|YP_001284134.1| PE family protein [Mycobacterium tuberculosis H37Ra]
 gi|148823957|ref|YP_001288711.1| PE family protein [Mycobacterium tuberculosis F11]
 37 more sequence titles
 
gi|167968598|ref|ZP_02550875.1| PE family protein [Mycobacterium tuberculosis H37Ra]
 gi|253798148|ref|YP_003031149.1| PE family protein [Mycobacterium tuberculosis KZN 1435]
 gi|254551828|ref|ZP_05142275.1| PE family protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|289553445|ref|ZP_06442655.1| PE family protein [Mycobacterium tuberculosis KZN 605]
 gi|289762941|ref|ZP_06522319.1| PE family protein [Mycobacterium tuberculosis GM 1503]
 gi|297635378|ref|ZP_06953158.1| PE family protein [Mycobacterium tuberculosis KZN 4207]
 gi|297732376|ref|ZP_06961494.1| PE family protein [Mycobacterium tuberculosis KZN R506]
 gi|306777050|ref|ZP_07415387.1| PE family protein [Mycobacterium tuberculosis SUMu001]
 gi|306780952|ref|ZP_07419289.1| PE family protein [Mycobacterium tuberculosis SUMu002]
 gi|306785580|ref|ZP_07423902.1| PE family protein [Mycobacterium tuberculosis SUMu003]
 gi|306790175|ref|ZP_07428497.1| PE family protein [Mycobacterium tuberculosis SUMu004]
 gi|306794259|ref|ZP_07432561.1| PE family protein [Mycobacterium tuberculosis SUMu005]
 gi|306798677|ref|ZP_07436979.1| PE family protein [Mycobacterium tuberculosis SUMu006]
 gi|306804532|ref|ZP_07441200.1| PE family protein [Mycobacterium tuberculosis SUMu008]
 gi|306973165|ref|ZP_07485826.1| PE family protein [Mycobacterium tuberculosis SUMu010]
 gi|307080874|ref|ZP_07490044.1| PE family protein [Mycobacterium tuberculosis SUMu011]
 gi|307085465|ref|ZP_07494578.1| PE family protein [Mycobacterium tuberculosis SUMu012]
 gi|313659708|ref|ZP_07816588.1| PE family protein [Mycobacterium tuberculosis KZN V2475]
 gi|7478605|pir||H70881 probable PE protein - Mycobacterium tuberculosis (strain H37RV)
 gi|41353451|emb|CAE55521.1| PE FAMILY PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|148506763|gb|ABQ74572.1| PE family protein [Mycobacterium tuberculosis H37Ra]
 gi|148722484|gb|ABR07109.1| PE family protein [Mycobacterium tuberculosis F11]
 gi|253319651|gb|ACT24254.1| PE family protein [Mycobacterium tuberculosis KZN 1435]
 gi|289438077|gb|EFD20570.1| PE family protein [Mycobacterium tuberculosis KZN 605]
 gi|289710447|gb|EFD74463.1| PE family protein [Mycobacterium tuberculosis GM 1503]
 gi|308214560|gb|EFO73959.1| PE family protein [Mycobacterium tuberculosis SUMu001]
 gi|308326207|gb|EFP15058.1| PE family protein [Mycobacterium tuberculosis SUMu002]
 gi|308329764|gb|EFP18615.1| PE family protein [Mycobacterium tuberculosis SUMu003]
 gi|308333370|gb|EFP22221.1| PE family protein [Mycobacterium tuberculosis SUMu004]
 gi|308337393|gb|EFP26244.1| PE family protein [Mycobacterium tuberculosis SUMu005]
 gi|308341058|gb|EFP29909.1| PE family protein [Mycobacterium tuberculosis SUMu006]
 gi|308348863|gb|EFP37714.1| PE family protein [Mycobacterium tuberculosis SUMu008]
 gi|308357428|gb|EFP46279.1| PE family protein [Mycobacterium tuberculosis SUMu010]
 gi|308361379|gb|EFP50230.1| PE family protein [Mycobacterium tuberculosis SUMu011]
 gi|308364989|gb|EFP53840.1| PE family protein [Mycobacterium tuberculosis SUMu012]
 gi|328457921|gb|AEB03344.1| PE family protein [Mycobacterium tuberculosis KZN 4207]
 gi|344220597|gb|AEN01228.1| PE family protein [Mycobacterium tuberculosis CTRI-2]
Length=275

 Score =  122 bits (306),  Expect = 6e-26, Method: Compositional matrix adjust.
 Identities = 61/76 (81%), Positives = 67/76 (89%), Gaps = 0/76 (0%)

Query  198  ASAIGMLSVPPAWAGQATLVSTTSTLPGAGWTAAAPQAAAGTFIPGMPGVASAARNSAGF  257
            AS+IG LSVPP+WAGQA LVS+TSTL GAGWT AAP  AAGT IPGMPG+ASA R+SAGF
Sbjct  199  ASSIGALSVPPSWAGQANLVSSTSTLQGAGWTTAAPHGAAGTVIPGMPGLASATRSSAGF  258

Query  258  GAPRYGVKPIVMPKPA  273
            GAPRYG KPIV+PKPA
Sbjct  259  GAPRYGAKPIVVPKPA  274


>gi|254822878|ref|ZP_05227879.1| PE family protein [Mycobacterium intracellulare ATCC 13950]
Length=176

 Score =  112 bits (281),  Expect = 5e-23, Method: Compositional matrix adjust.
 Identities = 67/104 (65%), Positives = 81/104 (78%), Gaps = 1/104 (0%)

Query  1    MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGT  60
            MSF+ T PE L AAA+ L  +G++M AQNAAAAAPTT+IAPAA DEVSALQAA F+AYG 
Sbjct  1    MSFVTTRPEALMAAASMLEALGSSMDAQNAAAAAPTTSIAPAAADEVSALQAAQFSAYGA  60

Query  61   FYQQVSAEAQAMHDMFVNTLGISAGTYGVTESLNS-SAAASPLS  103
            +YQQVSA+A+A+H   VN L  SAG+YG TE+ N  + AAS LS
Sbjct  61   WYQQVSAQAKAIHQTMVNNLDTSAGSYGETETANRVTTAASSLS  104


>gi|298526235|ref|ZP_07013644.1| PE family protein [Mycobacterium tuberculosis 94_M4241A]
 gi|298496029|gb|EFI31323.1| PE family protein [Mycobacterium tuberculosis 94_M4241A]
Length=142

 Score =  112 bits (279),  Expect = 7e-23, Method: Compositional matrix adjust.
 Identities = 83/123 (68%), Positives = 95/123 (78%), Gaps = 5/123 (4%)

Query  1    MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTA-IAPAALDEVSALQAALFTAYG  59
            MSFL T PEEL AAA +L TIG+AM AQNAAAAAPTT  + PAA DE+S LQA LFTAYG
Sbjct  1    MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60

Query  60   TFYQQVSAEAQAMHDMFVNTLGISAGTYGVTESLNSSAAASPLSGITGEASAIIQATTGL  119
            T YQQVSAEA A++D+FV TLG+SAGTY  TE+ NSSAAASPLSGI    ++I+    G 
Sbjct  61   TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGI----ASILVPRPGR  116

Query  120  FPP  122
             PP
Sbjct  117  CPP  119


>gi|333989636|ref|YP_004522250.1| PE family protein PE8 [Mycobacterium sp. JDM601]
 gi|333485604|gb|AEF34996.1| PE family protein PE8 [Mycobacterium sp. JDM601]
Length=273

 Score =  109 bits (273),  Expect = 4e-22, Method: Compositional matrix adjust.
 Identities = 57/92 (62%), Positives = 67/92 (73%), Gaps = 0/92 (0%)

Query  1   MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGT  60
           MSF+ T PE + A A+ L  IG+AM AQN AAAAPTT IAPA  DEVS LQA  F AYG 
Sbjct  1   MSFVTTHPEAMAATASNLQAIGSAMTAQNTAAAAPTTGIAPAGADEVSVLQATQFAAYGQ  60

Query  61  FYQQVSAEAQAMHDMFVNTLGISAGTYGVTES  92
            YQQ+SA+A A+ +MFVNTL  SA +YG TE+
Sbjct  61  LYQQISAQAAAIQEMFVNTLRTSADSYGSTET  92


>gi|254774063|ref|ZP_05215579.1| hypothetical protein MaviaA2_05238 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=287

 Score =  108 bits (271),  Expect = 6e-22, Method: Compositional matrix adjust.
 Identities = 54/79 (69%), Positives = 63/79 (80%), Gaps = 1/79 (1%)

Query  198  ASAIGMLSVPPAWAGQATLV-STTSTLPGAGWTAAAPQAAAGTFIPGMPGVASAARNSAG  256
            A+ +  LSVPP+WAG   +V S+++ L   GWTAAAPQA  GT +PGMPGV + ARNSAG
Sbjct  209  ATTVSKLSVPPSWAGATPVVGSSSAPLQTVGWTAAAPQAGVGTVVPGMPGVGTMARNSAG  268

Query  257  FGAPRYGVKPIVMPKPATV  275
            FGAPRYGVKPIVMPKPATV
Sbjct  269  FGAPRYGVKPIVMPKPATV  287


>gi|254774223|ref|ZP_05215739.1| PE family protein [Mycobacterium avium subsp. avium ATCC 25291]
Length=173

 Score =  106 bits (265),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 63/102 (62%), Positives = 78/102 (77%), Gaps = 3/102 (2%)

Query  1    MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGT  60
            MSF+ T PE L A A+ L  +G++M AQNAAAAAPTT+IAPAA DEVSALQAA F+AYGT
Sbjct  1    MSFVTTRPEALLAVASMLEGLGSSMDAQNAAAAAPTTSIAPAAADEVSALQAAQFSAYGT  60

Query  61   FYQQVSAEAQAMHDMFVNTLGISAGTYGVTE---SLNSSAAA  99
            +YQQVSA+A+A+H   V  L  +A +YG TE    +N+SAAA
Sbjct  61   WYQQVSAQAKAIHQTLVQNLDTNADSYGATEAANRVNTSAAA  102


>gi|342861310|ref|ZP_08717958.1| hypothetical protein MCOL_20601 [Mycobacterium colombiense CECT 
3035]
 gi|342131210|gb|EGT84491.1| hypothetical protein MCOL_20601 [Mycobacterium colombiense CECT 
3035]
Length=99

 Score =  104 bits (259),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 59/91 (65%), Positives = 70/91 (77%), Gaps = 0/91 (0%)

Query  1   MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGT  60
           MSF+ T PE L AAA  L TIG+ ++AQNAAAAAPTT + PAA DEVSAL AA F A+G 
Sbjct  1   MSFVTTQPEALAAAAGNLQTIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHGQ  60

Query  61  FYQQVSAEAQAMHDMFVNTLGISAGTYGVTE  91
            YQ VSA+A A+H+MFVNTL  S+G+Y VTE
Sbjct  61  MYQAVSAQAAAIHEMFVNTLSTSSGSYAVTE  91


>gi|118618471|ref|YP_906803.1| PE family protein [Mycobacterium ulcerans Agy99]
 gi|118570581|gb|ABL05332.1| PE family protein [Mycobacterium ulcerans Agy99]
Length=99

 Score =  103 bits (258),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 54/87 (63%), Positives = 68/87 (79%), Gaps = 0/87 (0%)

Query  1   MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGT  60
           MS++ T PE L AAA+ L  IG+ +++QNAAAAAPTT + PAA DEVSAL AA F A+  
Sbjct  1   MSYVTTQPEALAAAASTLQGIGSTLSSQNAAAAAPTTGVVPAAADEVSALTAAQFVAHAQ  60

Query  61  FYQQVSAEAQAMHDMFVNTLGISAGTY  87
            YQ VSA+A A+H+MFVNTLGIS+G+Y
Sbjct  61  MYQAVSAQASAIHEMFVNTLGISSGSY  87


>gi|183982677|ref|YP_001850968.1| PE family protein, PE19_1 [Mycobacterium marinum M]
 gi|183176003|gb|ACC41113.1| PE family protein, PE19_1 [Mycobacterium marinum M]
Length=99

 Score =  103 bits (257),  Expect = 3e-20, Method: Compositional matrix adjust.
 Identities = 54/87 (63%), Positives = 68/87 (79%), Gaps = 0/87 (0%)

Query  1   MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGT  60
           MS++ T PE L AAA+ L  IG+ +++QNAAAAAPTT + PAA DEVSAL AA F A+  
Sbjct  1   MSYVTTQPEALAAAASTLQGIGSTLSSQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  FYQQVSAEAQAMHDMFVNTLGISAGTY  87
            YQ VSA+A A+H+MFVNTLGIS+G+Y
Sbjct  61  MYQAVSAQASAIHEMFVNTLGISSGSY  87


>gi|240171995|ref|ZP_04750654.1| PE family protein [Mycobacterium kansasii ATCC 12478]
Length=170

 Score = 99.0 bits (245),  Expect = 8e-19, Method: Compositional matrix adjust.
 Identities = 61/98 (63%), Positives = 74/98 (76%), Gaps = 0/98 (0%)

Query  1   MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGT  60
           MSF+ T P  LTAAA+ L  +G++MA QNAAAAAPTT + P A D+ SALQAA F AYGT
Sbjct  1   MSFVTTRPAALTAAASALHIVGSSMATQNAAAAAPTTGLVPTAADQASALQAAQFAAYGT  60

Query  61  FYQQVSAEAQAMHDMFVNTLGISAGTYGVTESLNSSAA  98
           +YQQVSA+A  +H M VNTLG SAG+Y  TE+ N +AA
Sbjct  61  WYQQVSAQAMVIHQMLVNTLGSSAGSYAKTEAANRTAA  98


>gi|254820293|ref|ZP_05225294.1| hypothetical protein MintA_10211 [Mycobacterium intracellulare 
ATCC 13950]
 gi|212596298|gb|ACJ35567.1| PE7 [Mycobacterium intracellulare ATCC 13950]
Length=99

 Score = 94.0 bits (232),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 54/87 (63%), Positives = 65/87 (75%), Gaps = 0/87 (0%)

Query  1   MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGT  60
           MSF+ T PE L AAA  L  IG+ ++AQNAAAAAPTT + PAA DEVSAL AA F A+  
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  FYQQVSAEAQAMHDMFVNTLGISAGTY  87
            YQ VSA+AQA+H+ FVNTL  S+G+Y
Sbjct  61  MYQAVSAQAQAIHEAFVNTLSTSSGSY  87


>gi|342861305|ref|ZP_08717953.1| hypothetical protein MCOL_20576 [Mycobacterium colombiense CECT 
3035]
 gi|342131205|gb|EGT84486.1| hypothetical protein MCOL_20576 [Mycobacterium colombiense CECT 
3035]
Length=99

 Score = 93.6 bits (231),  Expect = 3e-17, Method: Compositional matrix adjust.
 Identities = 54/87 (63%), Positives = 65/87 (75%), Gaps = 0/87 (0%)

Query  1   MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGT  60
           MSF+ T PE L AAA  L  IG+ ++AQNAAAAAPTT + PAA DEVSAL AA F A+  
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  FYQQVSAEAQAMHDMFVNTLGISAGTY  87
            YQ VSA+A A+H+MFVNTL  S+G+Y
Sbjct  61  MYQAVSAQAAAIHEMFVNTLSTSSGSY  87


>gi|296164779|ref|ZP_06847341.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295899880|gb|EFG79324.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99

 Score = 93.6 bits (231),  Expect = 3e-17, Method: Compositional matrix adjust.
 Identities = 58/91 (64%), Positives = 71/91 (79%), Gaps = 0/91 (0%)

Query  1   MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGT  60
           MSF+ T PE L+AAA  L +IG+A+ AQNAAAAAPTT + PAA DEVSAL AA F A+  
Sbjct  1   MSFVTTQPEALSAAAGSLQSIGSALNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  FYQQVSAEAQAMHDMFVNTLGISAGTYGVTE  91
            YQ VSA+A A+H+MFVNTL +S+G+Y VTE
Sbjct  61  MYQAVSAQAAAIHEMFVNTLSMSSGSYAVTE  91


>gi|296166245|ref|ZP_06848684.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898429|gb|EFG77996.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=191

 Score = 92.0 bits (227),  Expect = 8e-17, Method: Compositional matrix adjust.
 Identities = 82/160 (52%), Positives = 105/160 (66%), Gaps = 9/160 (5%)

Query  1    MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGT  60
            MSF+ T PE L  AA +L T+G+A+AA++AAAA PTTAIAPAA DE+SALQAALFTAYG 
Sbjct  1    MSFVTTQPEALLYAAGKLETLGSALAAESAAAAPPTTAIAPAAADEISALQAALFTAYGE  60

Query  61   FYQQVSAEAQAMHDMFVNTLGISAGTYGVTESLNSSAAASPLSGITGEASAIIQATTGLF  120
             YQ V+A+A  +H  FV TL  SAG+Y  TE+ N++A A P +             +GL 
Sbjct  61   LYQSVNAQAANVHQQFVRTLNTSAGSYQATETANTAATALPYAAPAAAPQQAAVPGSGL-  119

Query  121  PPELSGGIGNILNIGAGNWASATSTLIGLAGGGLLPAEEA  160
                     NI ++GAGN+ SATS L+ +AGGGLL   +A
Sbjct  120  --------ANIADVGAGNFGSATSDLLAMAGGGLLIRPDA  151


>gi|296170606|ref|ZP_06852185.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894738|gb|EFG74468.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99

 Score = 91.7 bits (226),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 53/87 (61%), Positives = 65/87 (75%), Gaps = 0/87 (0%)

Query  1   MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGT  60
           MSF+ T PE L AAA  L  IG+ ++AQNAAAAAPTT + PAA DEVSAL AA F A+  
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  FYQQVSAEAQAMHDMFVNTLGISAGTY  87
            YQ VSA+A A+H+ FVNTL +S+G+Y
Sbjct  61  MYQAVSAQAAAIHEAFVNTLSMSSGSY  87


>gi|254775399|ref|ZP_05216915.1| hypothetical protein MaviaA2_12121 [Mycobacterium avium subsp. 
avium ATCC 25291]
 gi|212595819|gb|ACJ35525.1| PE7 [Mycobacterium avium subsp. avium]
 gi|336457654|gb|EGO36658.1| PE family protein [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=99

 Score = 90.5 bits (223),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 53/87 (61%), Positives = 64/87 (74%), Gaps = 0/87 (0%)

Query  1   MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGT  60
           MSF+ T PE L AAA  L  IG+ ++AQNAAAAAPTT + PAA DEVSAL AA F A+  
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  FYQQVSAEAQAMHDMFVNTLGISAGTY  87
            YQ VSA+A A+H+ FVNTL  S+G+Y
Sbjct  61  MYQAVSAQAAAIHEAFVNTLSTSSGSY  87


>gi|41407101|ref|NP_959937.1| hypothetical protein MAP1003c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41395452|gb|AAS03320.1| PE [Mycobacterium avium subsp. paratuberculosis K-10]
Length=696

 Score = 89.7 bits (221),  Expect = 4e-16, Method: Compositional matrix adjust.
 Identities = 81/162 (50%), Positives = 101/162 (63%), Gaps = 18/162 (11%)

Query  1    MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGT  60
            MSFL T  EE+ AA A L  I + +AAQNA AA+ TTAIAPAA D VSA QAA+F+AYGT
Sbjct  1    MSFLTTTTEEMLAAEALLSGINSNLAAQNAGAASATTAIAPAAADPVSAQQAAIFSAYGT  60

Query  61   FYQQVSAEAQAMHDMFVNTLGISAGTYGVTESLNSS-------AAASPL-SGITGEASAI  112
             YQ +++EAQ + + +  TLGIS+ +YG TE++N+S       +AA P  S  TG     
Sbjct  61   QYQAIASEAQTLLEQYSQTLGISSNSYGDTEAVNASQTAMQALSAADPTASAATGSNPID  120

Query  113  IQATTGLFPPELSGGIG----------NILNIGAGNWASATS  144
            I A    F  + SGG+G          NI NIG GNWASATS
Sbjct  121  ILAWLLGFNGQSSGGLGGMFGLSSNGANIGNIGIGNWASATS  162


 Score = 39.3 bits (90),  Expect = 0.72, Method: Compositional matrix adjust.
 Identities = 45/91 (50%), Positives = 62/91 (69%), Gaps = 5/91 (5%)

Query  189  AGIAAGLGSASAIGMLSVPPAWAGQA---TLVSTTSTLPGAGWTAAAPQAAAGTFIPGMP  245
            AG +A +G ASA+G LSVP +W+  A   +L S+ + L G+GWT A+ +A   T +PGMP
Sbjct  607  AGASAAVGEASAVGGLSVPASWSAAAPATSLASSAAPLEGSGWTVAS-EAEPVTAMPGMP  665

Query  246  GVASAARNSAGFGA-PRYGVKPIVMPKPATV  275
            G A+AA+ +  +G+ PRYG KPIVMPK   V
Sbjct  666  GAAAAAKGAGAYGSGPRYGFKPIVMPKQVVV  696


>gi|336461476|gb|EGO40346.1| PPE-repeat containing protein [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=690

 Score = 89.4 bits (220),  Expect = 5e-16, Method: Compositional matrix adjust.
 Identities = 81/162 (50%), Positives = 101/162 (63%), Gaps = 18/162 (11%)

Query  1    MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGT  60
            MSFL T  EE+ AA A L  I + +AAQNA AA+ TTAIAPAA D VSA QAA+F+AYGT
Sbjct  1    MSFLTTTTEEMLAAEALLSGINSNLAAQNAGAASATTAIAPAAADPVSAQQAAIFSAYGT  60

Query  61   FYQQVSAEAQAMHDMFVNTLGISAGTYGVTESLNSS-------AAASPL-SGITGEASAI  112
             YQ +++EAQ + + +  TLGIS+ +YG TE++N+S       +AA P  S  TG     
Sbjct  61   QYQAIASEAQTLLEQYSQTLGISSNSYGDTEAVNASQTAMQALSAADPTASAATGSNPID  120

Query  113  IQATTGLFPPELSGGIG----------NILNIGAGNWASATS  144
            I A    F  + SGG+G          NI NIG GNWASATS
Sbjct  121  ILAWLLGFNGQSSGGLGGMFGLSSNGANIGNIGIGNWASATS  162


 Score = 39.7 bits (91),  Expect = 0.51, Method: Compositional matrix adjust.
 Identities = 45/91 (50%), Positives = 62/91 (69%), Gaps = 5/91 (5%)

Query  189  AGIAAGLGSASAIGMLSVPPAWAGQA---TLVSTTSTLPGAGWTAAAPQAAAGTFIPGMP  245
            AG +A +G ASA+G LSVP +W+  A   +L S+ + L G+GWT A+ +A   T +PGMP
Sbjct  601  AGASAAVGEASAVGGLSVPASWSAAAPATSLASSAAPLEGSGWTVAS-EAEPVTAMPGMP  659

Query  246  GVASAARNSAGFGA-PRYGVKPIVMPKPATV  275
            G A+AA+ +  +G+ PRYG KPIVMPK   V
Sbjct  660  GAAAAAKGAGAYGSGPRYGFKPIVMPKQVVV  690


>gi|212595780|gb|ACJ35522.1| PE4 [Mycobacterium avium subsp. avium]
Length=297

 Score = 88.6 bits (218),  Expect = 8e-16, Method: Compositional matrix adjust.
 Identities = 81/162 (50%), Positives = 101/162 (63%), Gaps = 18/162 (11%)

Query  1    MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGT  60
            MSFL T  EE+ AA A L  I + +AAQNA AA+ TTAIAPAA D VSA QAA+F+AYGT
Sbjct  1    MSFLTTTTEEMLAAEALLSGINSNLAAQNAGAASATTAIAPAAADPVSAQQAAIFSAYGT  60

Query  61   FYQQVSAEAQAMHDMFVNTLGISAGTYGVTESLNSS-------AAASPL-SGITGEASAI  112
             YQ +++EAQ + + +  TLGIS+ +YG TE++N+S       +AA P  S  TG     
Sbjct  61   QYQAIASEAQTLLEQYSQTLGISSNSYGDTEAVNASQTAMQALSAADPTASAATGSNPID  120

Query  113  IQATTGLFPPELSGGIG----------NILNIGAGNWASATS  144
            I A    F  + SGG+G          NI NIG GNWASATS
Sbjct  121  ILAWLLGFNGQSSGGLGGMFGLSSNGANIGNIGIGNWASATS  162


>gi|183982680|ref|YP_001850971.1| PE family protein, PE19 [Mycobacterium marinum M]
 gi|183176006|gb|ACC41116.1| PE family protein, PE19 [Mycobacterium marinum M]
Length=99

 Score = 88.2 bits (217),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 56/87 (65%), Positives = 65/87 (75%), Gaps = 0/87 (0%)

Query  1   MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGT  60
           MSF+ T PE L AAAA L  IG  M+AQNAAAAAPTT + PAA DEVSAL AA F A+  
Sbjct  1   MSFVTTQPEALAAAAANLQGIGTTMSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  FYQQVSAEAQAMHDMFVNTLGISAGTY  87
            YQ VSA+A A+H+MFVNTL  S+G+Y
Sbjct  61  MYQAVSAQAAAIHEMFVNTLATSSGSY  87


>gi|240173524|ref|ZP_04752182.1| PE family protein, PE19_1 [Mycobacterium kansasii ATCC 12478]
Length=99

 Score = 85.5 bits (210),  Expect = 9e-15, Method: Compositional matrix adjust.
 Identities = 55/87 (64%), Positives = 65/87 (75%), Gaps = 0/87 (0%)

Query  1   MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGT  60
           MSF+ T PE L AAA+ L  IG  M+AQNAAAAAPTT + PAA DEVSAL AA F A+  
Sbjct  1   MSFVTTQPEALAAAASSLQGIGTTMSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  FYQQVSAEAQAMHDMFVNTLGISAGTY  87
            YQ VSA+A A+H+MFVNTL  S+G+Y
Sbjct  61  MYQAVSAQAAAIHEMFVNTLATSSGSY  87


>gi|118618467|ref|YP_906799.1| PE family protein [Mycobacterium ulcerans Agy99]
 gi|118570577|gb|ABL05328.1| PE family protein [Mycobacterium ulcerans Agy99]
Length=99

 Score = 85.1 bits (209),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 54/87 (63%), Positives = 63/87 (73%), Gaps = 0/87 (0%)

Query  1   MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGT  60
           MSF+ T PE L AAAA L  IG  M+AQNAAAAAPTT + PAA DEVSAL AA F  +  
Sbjct  1   MSFVTTQPEALAAAAANLQGIGTTMSAQNAAAAAPTTGVVPAAADEVSALTAAQFAGHAQ  60

Query  61  FYQQVSAEAQAMHDMFVNTLGISAGTY  87
            YQ VSA+A  +H+MFVNTL  S+G+Y
Sbjct  61  MYQAVSAQAAVIHEMFVNTLATSSGSY  87


>gi|15841256|ref|NP_336293.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|31792976|ref|NP_855469.1| PE family protein [Mycobacterium bovis AF2122/97]
 gi|57116910|ref|YP_177834.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 60 more sequence titles
 
gi|121637689|ref|YP_977912.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148661595|ref|YP_001283118.1| PE family protein [Mycobacterium tuberculosis H37Ra]
 gi|148823003|ref|YP_001287757.1| PE family protein [Mycobacterium tuberculosis F11]
 gi|167967963|ref|ZP_02550240.1| hypothetical protein MtubH3_07958 [Mycobacterium tuberculosis 
H37Ra]
 gi|224990173|ref|YP_002644860.1| PE family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253799172|ref|YP_003032173.1| PE family protein [Mycobacterium tuberculosis KZN 1435]
 gi|254231976|ref|ZP_04925303.1| PE family protein [Mycobacterium tuberculosis C]
 gi|289443255|ref|ZP_06432999.1| PE family protein [Mycobacterium tuberculosis T46]
 gi|289447402|ref|ZP_06437146.1| PE family protein [Mycobacterium tuberculosis CPHL_A]
 gi|289554440|ref|ZP_06443650.1| PE family protein [Mycobacterium tuberculosis KZN 605]
 gi|289569853|ref|ZP_06450080.1| PE family protein [Mycobacterium tuberculosis T17]
 gi|289574464|ref|ZP_06454691.1| PE family protein [Mycobacterium tuberculosis K85]
 gi|289745780|ref|ZP_06505158.1| PE family protein [Mycobacterium tuberculosis 02_1987]
 gi|289750355|ref|ZP_06509733.1| PE family protein [Mycobacterium tuberculosis T92]
 gi|289753883|ref|ZP_06513261.1| PE family protein [Mycobacterium tuberculosis EAS054]
 gi|289757890|ref|ZP_06517268.1| PE family protein [Mycobacterium tuberculosis T85]
 gi|289761938|ref|ZP_06521316.1| PE family protein [Mycobacterium tuberculosis GM 1503]
 gi|294996699|ref|ZP_06802390.1| PE family protein [Mycobacterium tuberculosis 210]
 gi|297634346|ref|ZP_06952126.1| PE family protein [Mycobacterium tuberculosis KZN 4207]
 gi|297731335|ref|ZP_06960453.1| PE family protein [Mycobacterium tuberculosis KZN R506]
 gi|298525284|ref|ZP_07012693.1| PE family protein [Mycobacterium tuberculosis 94_M4241A]
 gi|306776001|ref|ZP_07414338.1| PE family protein [Mycobacterium tuberculosis SUMu001]
 gi|306972114|ref|ZP_07484775.1| PE family protein [Mycobacterium tuberculosis SUMu010]
 gi|307079823|ref|ZP_07488993.1| PE family protein [Mycobacterium tuberculosis SUMu011]
 gi|307084400|ref|ZP_07493513.1| PE family protein [Mycobacterium tuberculosis SUMu012]
 gi|313658667|ref|ZP_07815547.1| PE family protein [Mycobacterium tuberculosis KZN V2475]
 gi|339631842|ref|YP_004723484.1| PE family protein [Mycobacterium africanum GM041182]
 gi|340626800|ref|YP_004745252.1| PE family protein [Mycobacterium canettii CIPT 140010059]
 gi|7478594|pir||F70929 probable PE protein - Mycobacterium tuberculosis (strain H37RV)
 gi|13881483|gb|AAK46107.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|31618567|emb|CAD94519.1| PE FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
 gi|38684059|emb|CAE55421.1| PE FAMILY PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|121493336|emb|CAL71807.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124601035|gb|EAY60045.1| PE family protein [Mycobacterium tuberculosis C]
 gi|148505747|gb|ABQ73556.1| PE family protein [Mycobacterium tuberculosis H37Ra]
 gi|148721530|gb|ABR06155.1| PE family protein [Mycobacterium tuberculosis F11]
 gi|224773286|dbj|BAH26092.1| PE family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253320675|gb|ACT25278.1| PE family protein [Mycobacterium tuberculosis KZN 1435]
 gi|289416174|gb|EFD13414.1| PE family protein [Mycobacterium tuberculosis T46]
 gi|289420360|gb|EFD17561.1| PE family protein [Mycobacterium tuberculosis CPHL_A]
 gi|289439072|gb|EFD21565.1| PE family protein [Mycobacterium tuberculosis KZN 605]
 gi|289538895|gb|EFD43473.1| PE family protein [Mycobacterium tuberculosis K85]
 gi|289543607|gb|EFD47255.1| PE family protein [Mycobacterium tuberculosis T17]
 gi|289686308|gb|EFD53796.1| PE family protein [Mycobacterium tuberculosis 02_1987]
 gi|289690942|gb|EFD58371.1| PE family protein [Mycobacterium tuberculosis T92]
 gi|289694470|gb|EFD61899.1| PE family protein [Mycobacterium tuberculosis EAS054]
 gi|289709444|gb|EFD73460.1| PE family protein [Mycobacterium tuberculosis GM 1503]
 gi|289713454|gb|EFD77466.1| PE family protein [Mycobacterium tuberculosis T85]
 gi|298495078|gb|EFI30372.1| PE family protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308215541|gb|EFO74940.1| PE family protein [Mycobacterium tuberculosis SUMu001]
 gi|308358416|gb|EFP47267.1| PE family protein [Mycobacterium tuberculosis SUMu010]
 gi|308362343|gb|EFP51194.1| PE family protein [Mycobacterium tuberculosis SUMu011]
 gi|308365997|gb|EFP54848.1| PE family protein [Mycobacterium tuberculosis SUMu012]
 gi|323719697|gb|EGB28817.1| PE family protein [Mycobacterium tuberculosis CDC1551A]
 gi|326903394|gb|EGE50327.1| PE family protein [Mycobacterium tuberculosis W-148]
 gi|328458927|gb|AEB04350.1| PE family protein [Mycobacterium tuberculosis KZN 4207]
 gi|339331198|emb|CCC26880.1| PE family protein [Mycobacterium africanum GM041182]
 gi|340004990|emb|CCC44138.1| PE family protein [Mycobacterium canettii CIPT 140010059]
 gi|341601716|emb|CCC64389.1| PE family protein [Mycobacterium bovis BCG str. Moreau RDJ]
 gi|344219610|gb|AEN00241.1| PE family protein [Mycobacterium tuberculosis CTRI-2]
Length=99

 Score = 84.0 bits (206),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 54/87 (63%), Positives = 65/87 (75%), Gaps = 0/87 (0%)

Query  1   MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGT  60
           MSF+ T PE L AAA  L  IG+A+ AQNAAAA PTT + PAA DEVSAL AA F A+  
Sbjct  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  FYQQVSAEAQAMHDMFVNTLGISAGTY  87
            YQ VSA+A A+H+MFVNTL +S+G+Y
Sbjct  61  IYQAVSAQAAAIHEMFVNTLQMSSGSY  87


>gi|333990542|ref|YP_004523156.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
 gi|333486510|gb|AEF35902.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
Length=99

 Score = 81.6 bits (200),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 52/87 (60%), Positives = 64/87 (74%), Gaps = 0/87 (0%)

Query  1   MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGT  60
           MSF+ T PE LTAAA  L  IG+A++AQNAAAA PTT + PAA DEVSAL AA F A+ +
Sbjct  1   MSFVNTQPEALTAAAGNLAAIGSALSAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAS  60

Query  61  FYQQVSAEAQAMHDMFVNTLGISAGTY  87
            YQ +SA+A+A+H  FV TL  SA +Y
Sbjct  61  MYQSISAQAEAIHQAFVATLNSSANSY  87


>gi|254364620|ref|ZP_04980666.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
 gi|134150134|gb|EBA42179.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
Length=99

 Score = 81.3 bits (199),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 53/87 (61%), Positives = 64/87 (74%), Gaps = 0/87 (0%)

Query  1   MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGT  60
           M F+ T PE L AAA  L  IG+A+ AQNAAAA PTT + PAA DEVSAL AA F A+  
Sbjct  1   MPFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  FYQQVSAEAQAMHDMFVNTLGISAGTY  87
            YQ VSA+A A+H+MFVNTL +S+G+Y
Sbjct  61  IYQAVSAQAAAIHEMFVNTLQMSSGSY  87


>gi|15841261|ref|NP_336298.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|148823006|ref|YP_001287760.1| PE family protein [Mycobacterium tuberculosis F11]
 gi|253799168|ref|YP_003032169.1| PE family protein [Mycobacterium tuberculosis KZN 1435]
 17 more sequence titles
 
gi|254364623|ref|ZP_04980669.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
 gi|289554436|ref|ZP_06443646.1| PE family protein [Mycobacterium tuberculosis KZN 605]
 gi|289745777|ref|ZP_06505155.1| PE family protein [Mycobacterium tuberculosis 02_1987]
 gi|298525287|ref|ZP_07012696.1| PE family protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308369527|ref|ZP_07418130.2| PE family protein [Mycobacterium tuberculosis SUMu002]
 gi|308402074|ref|ZP_07493517.2| PE family protein [Mycobacterium tuberculosis SUMu012]
 gi|13881488|gb|AAK46112.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|134150137|gb|EBA42182.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
 gi|148721533|gb|ABR06158.1| PE family protein [Mycobacterium tuberculosis F11]
 gi|253320671|gb|ACT25274.1| PE family protein [Mycobacterium tuberculosis KZN 1435]
 gi|289439068|gb|EFD21561.1| PE family protein [Mycobacterium tuberculosis KZN 605]
 gi|289686305|gb|EFD53793.1| PE family protein [Mycobacterium tuberculosis 02_1987]
 gi|298495081|gb|EFI30375.1| PE family protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308327297|gb|EFP16148.1| PE family protein [Mycobacterium tuberculosis SUMu002]
 gi|308365995|gb|EFP54846.1| PE family protein [Mycobacterium tuberculosis SUMu012]
 gi|323719669|gb|EGB28790.1| PE family protein [Mycobacterium tuberculosis CDC1551A]
 gi|328458923|gb|AEB04346.1| PE family protein [Mycobacterium tuberculosis KZN 4207]
Length=105

 Score = 79.0 bits (193),  Expect = 7e-13, Method: Compositional matrix adjust.
 Identities = 56/87 (65%), Positives = 64/87 (74%), Gaps = 0/87 (0%)

Query  1   MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAPAALDEVSALQAALFTAYGT  60
           MSF+ T PE L AAAA L  IG  M AQNAAAAAPTT + PAA DEVSAL AA F A+  
Sbjct  7   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  66

Query  61  FYQQVSAEAQAMHDMFVNTLGISAGTY  87
            YQ VSA+A A+H+MFVNTL  S+G+Y
Sbjct  67  MYQTVSAQAAAIHEMFVNTLVASSGSY  93



Lambda     K      H
   0.311    0.125    0.350 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 432410969436


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40