BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1046c

Length=174
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|57116815|ref|NP_215562.2|  hypothetical protein Rv1046c [Mycob...   342    1e-92
gi|15840476|ref|NP_335513.1|  hypothetical protein MT1075.1 [Myco...   339    1e-91
gi|31792237|ref|NP_854730.1|  hypothetical protein Mb1075c [Mycob...   338    2e-91
gi|289749579|ref|ZP_06508957.1|  LOW QUALITY PROTEIN: hypothetica...   337    3e-91
gi|289744786|ref|ZP_06504164.1|  conserved hypothetical protein [...   337    4e-91
gi|289757129|ref|ZP_06516507.1|  LOW QUALITY PROTEIN: conserved h...   335    1e-90


>gi|57116815|ref|NP_215562.2| hypothetical protein Rv1046c [Mycobacterium tuberculosis H37Rv]
 gi|41353637|emb|CAB06874.2| HYPOTHETICAL PROTEIN Rv1046c [Mycobacterium tuberculosis H37Rv]
Length=174

 Score =  342 bits (877),  Expect = 1e-92, Method: Compositional matrix adjust.
 Identities = 173/174 (99%), Positives = 174/174 (100%), Gaps = 0/174 (0%)

Query  1    LKVQARVGWNRRQLSAVGGRGQQLFANAPGHIPSTSHRRGTGDINRKIDESLAGAARPQA  60
            +KVQARVGWNRRQLSAVGGRGQQLFANAPGHIPSTSHRRGTGDINRKIDESLAGAARPQA
Sbjct  1    MKVQARVGWNRRQLSAVGGRGQQLFANAPGHIPSTSHRRGTGDINRKIDESLAGAARPQA  60

Query  61   NANYGATSDPPLTHQPKPGSPTQVGPRSPSPPGLRGLVKQLPEVHQSSLHLDTVASLPSS  120
            NANYGATSDPPLTHQPKPGSPTQVGPRSPSPPGLRGLVKQLPEVHQSSLHLDTVASLPSS
Sbjct  61   NANYGATSDPPLTHQPKPGSPTQVGPRSPSPPGLRGLVKQLPEVHQSSLHLDTVASLPSS  120

Query  121  RPSPHHTPLALRSRSGHFSPDEIRNRRSRKRSQSHMPPRTPPRGRCLRAPEALA  174
            RPSPHHTPLALRSRSGHFSPDEIRNRRSRKRSQSHMPPRTPPRGRCLRAPEALA
Sbjct  121  RPSPHHTPLALRSRSGHFSPDEIRNRRSRKRSQSHMPPRTPPRGRCLRAPEALA  174


>gi|15840476|ref|NP_335513.1| hypothetical protein MT1075.1 [Mycobacterium tuberculosis CDC1551]
 gi|148822256|ref|YP_001287009.1| hypothetical protein TBFG_11064 [Mycobacterium tuberculosis F11]
 gi|167970111|ref|ZP_02552388.1| hypothetical protein MtubH3_19598 [Mycobacterium tuberculosis 
H37Ra]
 34 more sequence titles
 
gi|253799921|ref|YP_003032922.1| hypothetical protein TBMG_02942 [Mycobacterium tuberculosis KZN 
1435]
 gi|254231337|ref|ZP_04924664.1| hypothetical protein TBCG_01034 [Mycobacterium tuberculosis C]
 gi|254363961|ref|ZP_04980007.1| hypothetical protein TBHG_01030 [Mycobacterium tuberculosis str. 
Haarlem]
 gi|289446627|ref|ZP_06436371.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289555171|ref|ZP_06444381.1| hypothetical protein TBXG_02922 [Mycobacterium tuberculosis KZN 
605]
 gi|289569027|ref|ZP_06449254.1| hypothetical protein TBJG_01532 [Mycobacterium tuberculosis T17]
 gi|289573686|ref|ZP_06453913.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289753108|ref|ZP_06512486.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289761182|ref|ZP_06520560.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|308370592|ref|ZP_07666975.1| hypothetical protein TMCG_00665 [Mycobacterium tuberculosis SUMu003]
 gi|308375336|ref|ZP_07667996.1| hypothetical protein TMGG_03122 [Mycobacterium tuberculosis SUMu007]
 gi|308377597|ref|ZP_07668547.1| hypothetical protein TMIG_03614 [Mycobacterium tuberculosis SUMu009]
 gi|308378807|ref|ZP_07668827.1| hypothetical protein TMJG_02720 [Mycobacterium tuberculosis SUMu010]
 gi|308379950|ref|ZP_07669080.1| hypothetical protein TMKG_01539 [Mycobacterium tuberculosis SUMu011]
 gi|308398328|ref|ZP_07669380.1| hypothetical protein TMLG_01756 [Mycobacterium tuberculosis SUMu012]
 gi|13880649|gb|AAK45327.1| hypothetical protein MT1075.1 [Mycobacterium tuberculosis CDC1551]
 gi|124600396|gb|EAY59406.1| hypothetical protein TBCG_01034 [Mycobacterium tuberculosis C]
 gi|134149475|gb|EBA41520.1| hypothetical protein TBHG_01030 [Mycobacterium tuberculosis str. 
Haarlem]
 gi|148720783|gb|ABR05408.1| hypothetical protein TBFG_11064 [Mycobacterium tuberculosis F11]
 gi|253321423|gb|ACT26026.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
1435]
 gi|289419585|gb|EFD16786.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289439803|gb|EFD22296.1| hypothetical protein TBXG_02922 [Mycobacterium tuberculosis KZN 
605]
 gi|289538117|gb|EFD42695.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289542781|gb|EFD46429.1| hypothetical protein TBJG_01532 [Mycobacterium tuberculosis T17]
 gi|289693695|gb|EFD61124.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289708688|gb|EFD72704.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|308331476|gb|EFP20327.1| hypothetical protein TMCG_00665 [Mycobacterium tuberculosis SUMu003]
 gi|308346649|gb|EFP35500.1| hypothetical protein TMGG_03122 [Mycobacterium tuberculosis SUMu007]
 gi|308355219|gb|EFP44070.1| hypothetical protein TMIG_03614 [Mycobacterium tuberculosis SUMu009]
 gi|308359176|gb|EFP48027.1| hypothetical protein TMJG_02720 [Mycobacterium tuberculosis SUMu010]
 gi|308363087|gb|EFP51938.1| hypothetical protein TMKG_01539 [Mycobacterium tuberculosis SUMu011]
 gi|308366739|gb|EFP55590.1| hypothetical protein TMLG_01756 [Mycobacterium tuberculosis SUMu012]
 gi|328459665|gb|AEB05088.1| hypothetical protein TBSG_02960 [Mycobacterium tuberculosis KZN 
4207]
 gi|344218873|gb|AEM99503.1| hypothetical protein MTCTRI2_1073 [Mycobacterium tuberculosis 
CTRI-2]
Length=262

 Score =  339 bits (869),  Expect = 1e-91, Method: Compositional matrix adjust.
 Identities = 171/172 (99%), Positives = 172/172 (100%), Gaps = 0/172 (0%)

Query  1    LKVQARVGWNRRQLSAVGGRGQQLFANAPGHIPSTSHRRGTGDINRKIDESLAGAARPQA  60
            LKVQARVGWNRRQLSAVGGRGQQLFANAPGHIPSTSHRRGTGDINRKIDESLAGAARPQA
Sbjct  66   LKVQARVGWNRRQLSAVGGRGQQLFANAPGHIPSTSHRRGTGDINRKIDESLAGAARPQA  125

Query  61   NANYGATSDPPLTHQPKPGSPTQVGPRSPSPPGLRGLVKQLPEVHQSSLHLDTVASLPSS  120
            NANYGATSDPPLTHQPKPGSPTQVGPRSPSPPGLRGLVKQLPEVHQSSLHLDTVASLPSS
Sbjct  126  NANYGATSDPPLTHQPKPGSPTQVGPRSPSPPGLRGLVKQLPEVHQSSLHLDTVASLPSS  185

Query  121  RPSPHHTPLALRSRSGHFSPDEIRNRRSRKRSQSHMPPRTPPRGRCLRAPEA  172
            RPSPHHTPLALRSRSGHFSPDEIRNRRSRKRSQSHMPPRTPPRGRCLRAPE+
Sbjct  186  RPSPHHTPLALRSRSGHFSPDEIRNRRSRKRSQSHMPPRTPPRGRCLRAPES  237


>gi|31792237|ref|NP_854730.1| hypothetical protein Mb1075c [Mycobacterium bovis AF2122/97]
 gi|121636975|ref|YP_977198.1| hypothetical protein BCG_1104c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|148660830|ref|YP_001282353.1| hypothetical protein MRA_1055 [Mycobacterium tuberculosis H37Ra]
 10 more sequence titles
 
gi|224989447|ref|YP_002644134.1| hypothetical protein JTY_1076 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|289442469|ref|ZP_06432213.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|308371844|ref|ZP_07667253.1| hypothetical protein TMDG_04038 [Mycobacterium tuberculosis SUMu004]
 gi|31617825|emb|CAD93935.1| HYPOTHETICAL PROTEIN Mb1075c [Mycobacterium bovis AF2122/97]
 gi|121492622|emb|CAL71091.1| Hypothetical protein BCG_1104c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|148504982|gb|ABQ72791.1| hypothetical protein MRA_1055 [Mycobacterium tuberculosis H37Ra]
 gi|224772560|dbj|BAH25366.1| hypothetical protein JTY_1076 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|289415388|gb|EFD12628.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|308335281|gb|EFP24132.1| hypothetical protein TMDG_04038 [Mycobacterium tuberculosis SUMu004]
 gi|341600991|emb|CCC63663.1| hypothetical protein BCGM_1070c [Mycobacterium bovis BCG str. 
Moreau RDJ]
Length=197

 Score =  338 bits (867),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 170/172 (99%), Positives = 172/172 (100%), Gaps = 0/172 (0%)

Query  1    LKVQARVGWNRRQLSAVGGRGQQLFANAPGHIPSTSHRRGTGDINRKIDESLAGAARPQA  60
            +KVQARVGWNRRQLSAVGGRGQQLFANAPGHIPSTSHRRGTGDINRKIDESLAGAARPQA
Sbjct  1    MKVQARVGWNRRQLSAVGGRGQQLFANAPGHIPSTSHRRGTGDINRKIDESLAGAARPQA  60

Query  61   NANYGATSDPPLTHQPKPGSPTQVGPRSPSPPGLRGLVKQLPEVHQSSLHLDTVASLPSS  120
            NANYGATSDPPLTHQPKPGSPTQVGPRSPSPPGLRGLVKQLPEVHQSSLHLDTVASLPSS
Sbjct  61   NANYGATSDPPLTHQPKPGSPTQVGPRSPSPPGLRGLVKQLPEVHQSSLHLDTVASLPSS  120

Query  121  RPSPHHTPLALRSRSGHFSPDEIRNRRSRKRSQSHMPPRTPPRGRCLRAPEA  172
            RPSPHHTPLALRSRSGHFSPDEIRNRRSRKRSQSHMPPRTPPRGRCLRAPE+
Sbjct  121  RPSPHHTPLALRSRSGHFSPDEIRNRRSRKRSQSHMPPRTPPRGRCLRAPES  172


>gi|289749579|ref|ZP_06508957.1| LOW QUALITY PROTEIN: hypothetical protein TBDG_01804 [Mycobacterium 
tuberculosis T92]
 gi|339631109|ref|YP_004722751.1| hypothetical protein MAF_10580 [Mycobacterium africanum GM041182]
 gi|289690166|gb|EFD57595.1| LOW QUALITY PROTEIN: hypothetical protein TBDG_01804 [Mycobacterium 
tuberculosis T92]
 gi|339330465|emb|CCC26130.1| hypothetical protein MAF_10580 [Mycobacterium africanum GM041182]
Length=175

 Score =  337 bits (865),  Expect = 3e-91, Method: Compositional matrix adjust.
 Identities = 170/172 (99%), Positives = 172/172 (100%), Gaps = 0/172 (0%)

Query  1    LKVQARVGWNRRQLSAVGGRGQQLFANAPGHIPSTSHRRGTGDINRKIDESLAGAARPQA  60
            +KVQARVGWNRRQLSAVGGRGQQLFANAPGHIPSTSHRRGTGDINRKIDESLAGAARPQA
Sbjct  1    MKVQARVGWNRRQLSAVGGRGQQLFANAPGHIPSTSHRRGTGDINRKIDESLAGAARPQA  60

Query  61   NANYGATSDPPLTHQPKPGSPTQVGPRSPSPPGLRGLVKQLPEVHQSSLHLDTVASLPSS  120
            NANYGATSDPPLTHQPKPGSPTQVGPRSPSPPGLRGLVKQLPEVHQSSLHLDTVASLPSS
Sbjct  61   NANYGATSDPPLTHQPKPGSPTQVGPRSPSPPGLRGLVKQLPEVHQSSLHLDTVASLPSS  120

Query  121  RPSPHHTPLALRSRSGHFSPDEIRNRRSRKRSQSHMPPRTPPRGRCLRAPEA  172
            RPSPHHTPLALRSRSGHFSPDEIRNRRSRKRSQSHMPPRTPPRGRCLRAPE+
Sbjct  121  RPSPHHTPLALRSRSGHFSPDEIRNRRSRKRSQSHMPPRTPPRGRCLRAPES  172


>gi|289744786|ref|ZP_06504164.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289685314|gb|EFD52802.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|326904727|gb|EGE51660.1| hypothetical protein TBPG_02641 [Mycobacterium tuberculosis W-148]
Length=262

 Score =  337 bits (864),  Expect = 4e-91, Method: Compositional matrix adjust.
 Identities = 170/172 (99%), Positives = 171/172 (99%), Gaps = 0/172 (0%)

Query  1    LKVQARVGWNRRQLSAVGGRGQQLFANAPGHIPSTSHRRGTGDINRKIDESLAGAARPQA  60
            LKVQARVGWNRRQLSAVGGRGQQLFANAPGHIPSTSHRRGTGDINRKIDESLAGAARPQA
Sbjct  66   LKVQARVGWNRRQLSAVGGRGQQLFANAPGHIPSTSHRRGTGDINRKIDESLAGAARPQA  125

Query  61   NANYGATSDPPLTHQPKPGSPTQVGPRSPSPPGLRGLVKQLPEVHQSSLHLDTVASLPSS  120
            NANYGATSDPPLTHQPKPGSPTQVGPRSPSPPGLRGLVKQLPEVHQSSLHLDTVASLPSS
Sbjct  126  NANYGATSDPPLTHQPKPGSPTQVGPRSPSPPGLRGLVKQLPEVHQSSLHLDTVASLPSS  185

Query  121  RPSPHHTPLALRSRSGHFSPDEIRNRRSRKRSQSHMPPRTPPRGRCLRAPEA  172
            RPSPHHTPLALRSRSGHFSPDEIRNRRSRK SQSHMPPRTPPRGRCLRAPE+
Sbjct  186  RPSPHHTPLALRSRSGHFSPDEIRNRRSRKSSQSHMPPRTPPRGRCLRAPES  237


>gi|289757129|ref|ZP_06516507.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium 
tuberculosis T85]
 gi|289712693|gb|EFD76705.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium 
tuberculosis T85]
Length=175

 Score =  335 bits (860),  Expect = 1e-90, Method: Compositional matrix adjust.
 Identities = 169/172 (99%), Positives = 171/172 (99%), Gaps = 0/172 (0%)

Query  1    LKVQARVGWNRRQLSAVGGRGQQLFANAPGHIPSTSHRRGTGDINRKIDESLAGAARPQA  60
            +KVQARVGWNRRQLSAVGGRGQQLFANAPGHIPSTSHRRGTGDINRKIDESLAGAARPQA
Sbjct  1    MKVQARVGWNRRQLSAVGGRGQQLFANAPGHIPSTSHRRGTGDINRKIDESLAGAARPQA  60

Query  61   NANYGATSDPPLTHQPKPGSPTQVGPRSPSPPGLRGLVKQLPEVHQSSLHLDTVASLPSS  120
            NANYGATSDPPLTHQPKPGSPTQVGPRSPSPPGLRGLVKQLPEVHQSSLHLDTVASLPSS
Sbjct  61   NANYGATSDPPLTHQPKPGSPTQVGPRSPSPPGLRGLVKQLPEVHQSSLHLDTVASLPSS  120

Query  121  RPSPHHTPLALRSRSGHFSPDEIRNRRSRKRSQSHMPPRTPPRGRCLRAPEA  172
            RPSPHHTPLALRSRSGHFSPDEIRNRRSRK SQSHMPPRTPPRGRCLRAPE+
Sbjct  121  RPSPHHTPLALRSRSGHFSPDEIRNRRSRKSSQSHMPPRTPPRGRCLRAPES  172



Lambda     K      H
   0.314    0.131    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 142560794112


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40