BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1052

Length=129
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15608192|ref|NP_215568.1|  hypothetical protein Rv1052 [Mycoba...   264    3e-69
gi|167967674|ref|ZP_02549951.1|  hypothetical protein MtubH3_0640...   167    5e-40
gi|189347716|ref|YP_001944245.1|  mobile mystery protein B [Chlor...  43.5    0.011
gi|189499707|ref|YP_001959177.1|  mobile mystery protein B [Chlor...  39.3    0.19 
gi|319954701|ref|YP_004165968.1|  mobile mystery protein b [Cellu...  39.3    0.21 
gi|121607008|ref|YP_994815.1|  mobile mystery protein B [Verminep...  37.7    0.52 
gi|338731216|ref|YP_004660608.1|  sugar isomerase (SIS) [Thermoto...  36.6    1.2  
gi|310789339|gb|EFQ24872.1|  peptidase family C50 [Glomerella gra...  35.4    2.5  
gi|192359940|ref|YP_001981706.1|  Fic family protein [Cellvibrio ...  35.0    3.4  
gi|312963984|ref|ZP_07778455.1|  mobile mystery protein B [Pseudo...  35.0    3.5  
gi|338740684|ref|YP_004677646.1|  serine-glyoxylate aminotransfer...  34.7    4.4  
gi|326496719|dbj|BAJ98386.1|  predicted protein [Hordeum vulgare ...  34.7    4.9  
gi|293602773|ref|ZP_06685213.1|  fic family toxin-antitoxin syste...  34.3    5.8  


>gi|15608192|ref|NP_215568.1| hypothetical protein Rv1052 [Mycobacterium tuberculosis H37Rv]
 gi|15840484|ref|NP_335521.1| hypothetical protein MT1083 [Mycobacterium tuberculosis CDC1551]
 gi|31792243|ref|NP_854736.1| hypothetical protein Mb1081 [Mycobacterium bovis AF2122/97]
 57 more sequence titles
 
gi|121636981|ref|YP_977204.1| hypothetical protein BCG_1110 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|148660836|ref|YP_001282359.1| hypothetical protein MRA_1061 [Mycobacterium tuberculosis H37Ra]
 gi|148822262|ref|YP_001287016.1| hypothetical protein TBFG_11071 [Mycobacterium tuberculosis F11]
 gi|224989453|ref|YP_002644140.1| hypothetical protein JTY_1082 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253799914|ref|YP_003032915.1| hypothetical protein TBMG_04082 [Mycobacterium tuberculosis KZN 
1435]
 gi|254363967|ref|ZP_04980013.1| hypothetical protein TBHG_01037 [Mycobacterium tuberculosis str. 
Haarlem]
 gi|289442476|ref|ZP_06432220.1| hypothetical protein TBLG_03219 [Mycobacterium tuberculosis T46]
 gi|289446634|ref|ZP_06436378.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289555165|ref|ZP_06444375.1| hypothetical protein TBXG_02915 [Mycobacterium tuberculosis KZN 
605]
 gi|289569036|ref|ZP_06449263.1| hypothetical protein TBJG_01541 [Mycobacterium tuberculosis T17]
 gi|289573693|ref|ZP_06453920.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289744792|ref|ZP_06504170.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289749586|ref|ZP_06508964.1| hypothetical protein TBDG_01811 [Mycobacterium tuberculosis T92]
 gi|289753114|ref|ZP_06512492.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289757136|ref|ZP_06516514.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289761189|ref|ZP_06520567.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|298524551|ref|ZP_07011960.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308231715|ref|ZP_07413531.2| hypothetical protein TMAG_00996 [Mycobacterium tuberculosis SUMu001]
 gi|308370595|ref|ZP_07666976.1| hypothetical protein TMCG_00674 [Mycobacterium tuberculosis SUMu003]
 gi|308375337|ref|ZP_07667997.1| hypothetical protein TMGG_03130 [Mycobacterium tuberculosis SUMu007]
 gi|308376601|ref|ZP_07668308.1| hypothetical protein TMHG_00231 [Mycobacterium tuberculosis SUMu008]
 gi|308377599|ref|ZP_07668548.1| hypothetical protein TMIG_03798 [Mycobacterium tuberculosis SUMu009]
 gi|308378809|ref|ZP_07483961.2| hypothetical protein TMJG_02728 [Mycobacterium tuberculosis SUMu010]
 gi|308379952|ref|ZP_07488199.2| hypothetical protein TMKG_01547 [Mycobacterium tuberculosis SUMu011]
 gi|339631116|ref|YP_004722758.1| hypothetical protein MAF_10650 [Mycobacterium africanum GM041182]
 gi|2896689|emb|CAA17168.1| HYPOTHETICAL PROTEIN Rv1052 [Mycobacterium tuberculosis H37Rv]
 gi|13880658|gb|AAK45335.1| hypothetical protein MT1083 [Mycobacterium tuberculosis CDC1551]
 gi|31617831|emb|CAD93941.1| HYPOTHETICAL PROTEIN Mb1081 [Mycobacterium bovis AF2122/97]
 gi|121492628|emb|CAL71097.1| Hypothetical protein BCG_1110 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|134149481|gb|EBA41526.1| hypothetical protein TBHG_01037 [Mycobacterium tuberculosis str. 
Haarlem]
 gi|148504988|gb|ABQ72797.1| hypothetical protein MRA_1061 [Mycobacterium tuberculosis H37Ra]
 gi|148720789|gb|ABR05414.1| hypothetical protein TBFG_11071 [Mycobacterium tuberculosis F11]
 gi|224772566|dbj|BAH25372.1| hypothetical protein JTY_1082 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253321417|gb|ACT26020.1| hypothetical protein TBMG_04082 [Mycobacterium tuberculosis KZN 
1435]
 gi|289415395|gb|EFD12635.1| hypothetical protein TBLG_03219 [Mycobacterium tuberculosis T46]
 gi|289419592|gb|EFD16793.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289439797|gb|EFD22290.1| hypothetical protein TBXG_02915 [Mycobacterium tuberculosis KZN 
605]
 gi|289538124|gb|EFD42702.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289542790|gb|EFD46438.1| hypothetical protein TBJG_01541 [Mycobacterium tuberculosis T17]
 gi|289685320|gb|EFD52808.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289690173|gb|EFD57602.1| hypothetical protein TBDG_01811 [Mycobacterium tuberculosis T92]
 gi|289693701|gb|EFD61130.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289708695|gb|EFD72711.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|289712700|gb|EFD76712.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298494345|gb|EFI29639.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308216269|gb|EFO75668.1| hypothetical protein TMAG_00996 [Mycobacterium tuberculosis SUMu001]
 gi|308331457|gb|EFP20308.1| hypothetical protein TMCG_00674 [Mycobacterium tuberculosis SUMu003]
 gi|308346629|gb|EFP35480.1| hypothetical protein TMGG_03130 [Mycobacterium tuberculosis SUMu007]
 gi|308350548|gb|EFP39399.1| hypothetical protein TMHG_00231 [Mycobacterium tuberculosis SUMu008]
 gi|308355200|gb|EFP44051.1| hypothetical protein TMIG_03798 [Mycobacterium tuberculosis SUMu009]
 gi|308359155|gb|EFP48006.1| hypothetical protein TMJG_02728 [Mycobacterium tuberculosis SUMu010]
 gi|308363070|gb|EFP51921.1| hypothetical protein TMKG_01547 [Mycobacterium tuberculosis SUMu011]
 gi|326904720|gb|EGE51653.1| hypothetical protein TBPG_02634 [Mycobacterium tuberculosis W-148]
 gi|328459659|gb|AEB05082.1| hypothetical protein TBSG_02953 [Mycobacterium tuberculosis KZN 
4207]
 gi|339330472|emb|CCC26137.1| hypothetical protein MAF_10650 [Mycobacterium africanum GM041182]
 gi|341600997|emb|CCC63669.1| hypothetical protein BCGM_1076 [Mycobacterium bovis BCG str. 
Moreau RDJ]
 gi|344218879|gb|AEM99509.1| hypothetical protein MTCTRI2_1079 [Mycobacterium tuberculosis 
CTRI-2]
Length=129

 Score =  264 bits (674),  Expect = 3e-69, Method: Compositional matrix adjust.
 Identities = 129/129 (100%), Positives = 129/129 (100%), Gaps = 0/129 (0%)

Query  1    MDCCEERGVARHKGLSQVGTPGCPRWSQAVSCRCSAYREAAVTAVQMPLTPGYGETPLPH  60
            MDCCEERGVARHKGLSQVGTPGCPRWSQAVSCRCSAYREAAVTAVQMPLTPGYGETPLPH
Sbjct  1    MDCCEERGVARHKGLSQVGTPGCPRWSQAVSCRCSAYREAAVTAVQMPLTPGYGETPLPH  60

Query  61   DELAALLPEVVEVLDKPITRADVYDLEQGLQDQVFDLLMPTAVEGSLSLDELLSDHFVRD  120
            DELAALLPEVVEVLDKPITRADVYDLEQGLQDQVFDLLMPTAVEGSLSLDELLSDHFVRD
Sbjct  61   DELAALLPEVVEVLDKPITRADVYDLEQGLQDQVFDLLMPTAVEGSLSLDELLSDHFVRD  120

Query  121  LHARMFGPV  129
            LHARMFGPV
Sbjct  121  LHARMFGPV  129


>gi|167967674|ref|ZP_02549951.1| hypothetical protein MtubH3_06406 [Mycobacterium tuberculosis 
H37Ra]
 gi|254231342|ref|ZP_04924669.1| hypothetical protein TBCG_01040 [Mycobacterium tuberculosis C]
 gi|254550040|ref|ZP_05140487.1| hypothetical protein Mtube_06213 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|294995245|ref|ZP_06800936.1| hypothetical protein Mtub2_12222 [Mycobacterium tuberculosis 
210]
 gi|297633584|ref|ZP_06951364.1| hypothetical protein MtubK4_05648 [Mycobacterium tuberculosis 
KZN 4207]
 gi|297730570|ref|ZP_06959688.1| hypothetical protein MtubKR_05733 [Mycobacterium tuberculosis 
KZN R506]
 gi|313657898|ref|ZP_07814778.1| hypothetical protein MtubKV_05728 [Mycobacterium tuberculosis 
KZN V2475]
 gi|124600401|gb|EAY59411.1| hypothetical protein TBCG_01040 [Mycobacterium tuberculosis C]
Length=83

 Score =  167 bits (423),  Expect = 5e-40, Method: Compositional matrix adjust.
 Identities = 83/83 (100%), Positives = 83/83 (100%), Gaps = 0/83 (0%)

Query  47   MPLTPGYGETPLPHDELAALLPEVVEVLDKPITRADVYDLEQGLQDQVFDLLMPTAVEGS  106
            MPLTPGYGETPLPHDELAALLPEVVEVLDKPITRADVYDLEQGLQDQVFDLLMPTAVEGS
Sbjct  1    MPLTPGYGETPLPHDELAALLPEVVEVLDKPITRADVYDLEQGLQDQVFDLLMPTAVEGS  60

Query  107  LSLDELLSDHFVRDLHARMFGPV  129
            LSLDELLSDHFVRDLHARMFGPV
Sbjct  61   LSLDELLSDHFVRDLHARMFGPV  83


>gi|189347716|ref|YP_001944245.1| mobile mystery protein B [Chlorobium limicola DSM 245]
 gi|189341863|gb|ACD91266.1| mobile mystery protein B [Chlorobium limicola DSM 245]
Length=198

 Score = 43.5 bits (101),  Expect = 0.011, Method: Compositional matrix adjust.
 Identities = 29/80 (37%), Positives = 44/80 (55%), Gaps = 18/80 (22%)

Query  54   GETPLPHDELAALLPEVVEVLDKPITRADVYDLEQGLQDQVFDLLMPTAVEGSLSL----  109
            G+TP+  DE A LL   +       T++++ + EQ   +Q        AV+ SLS     
Sbjct  10   GQTPISEDEKAGLLIPTIS------TKSELDEFEQKNIEQ--------AVQWSLSRRFRQ  55

Query  110  DELLSDHFVRDLHARMFGPV  129
            +E+L++ FVR+LH RMFG V
Sbjct  56   EEILTERFVRELHRRMFGSV  75


>gi|189499707|ref|YP_001959177.1| mobile mystery protein B [Chlorobium phaeobacteroides BS1]
 gi|189495148|gb|ACE03696.1| mobile mystery protein B [Chlorobium phaeobacteroides BS1]
Length=198

 Score = 39.3 bits (90),  Expect = 0.19, Method: Compositional matrix adjust.
 Identities = 26/80 (33%), Positives = 42/80 (53%), Gaps = 18/80 (22%)

Query  54   GETPLPHDELAALLPEVVEVLDKPITRADVYDLEQGLQDQVFDLLMPTAVEGSLSL----  109
            G+TP+  D+   LL   +       TR ++ + EQ        L +  AV+ +LS     
Sbjct  10   GQTPIEEDDKQGLLVPTIS------TRGELDEFEQ--------LNIEQAVQWTLSRRFRQ  55

Query  110  DELLSDHFVRDLHARMFGPV  129
            +++L++ FVRD+H RMFG V
Sbjct  56   EDILTERFVRDVHKRMFGNV  75


>gi|319954701|ref|YP_004165968.1| mobile mystery protein b [Cellulophaga algicola DSM 14237]
 gi|319423361|gb|ADV50470.1| mobile mystery protein B [Cellulophaga algicola DSM 14237]
Length=198

 Score = 39.3 bits (90),  Expect = 0.21, Method: Compositional matrix adjust.
 Identities = 20/46 (44%), Positives = 29/46 (64%), Gaps = 4/46 (8%)

Query  88   QGLQDQVFDLLMPTAVEGS----LSLDELLSDHFVRDLHARMFGPV  129
            QG  D+   L +  AVE +    L L+++L++ FVRDLH RM+G V
Sbjct  30   QGELDEFEQLNIEKAVEWTIHTKLKLEKILTEKFVRDLHKRMYGDV  75


>gi|121607008|ref|YP_994815.1| mobile mystery protein B [Verminephrobacter eiseniae EF01-2]
 gi|121551648|gb|ABM55797.1| mobile mystery protein B [Verminephrobacter eiseniae EF01-2]
Length=196

 Score = 37.7 bits (86),  Expect = 0.52, Method: Compositional matrix adjust.
 Identities = 25/76 (33%), Positives = 38/76 (50%), Gaps = 12/76 (15%)

Query  54   GETPLPHDELAALLPEVVEVLDKPITRADVYDLEQGLQDQVFDLLMPTAVEGSLSLDELL  113
            G+TPL  DE A L+PE +      +T+ D+ D EQ       ++L            ++L
Sbjct  10   GQTPLDPDEKAGLIPEHL------VTKGDLNDWEQE------NILRAVRWLKRARAPDVL  57

Query  114  SDHFVRDLHARMFGPV  129
            S+ F R+LH +MFG  
Sbjct  58   SEGFCRELHKQMFGKT  73


>gi|338731216|ref|YP_004660608.1| sugar isomerase (SIS) [Thermotoga thermarum DSM 5069]
 gi|335365567|gb|AEH51512.1| sugar isomerase (SIS) [Thermotoga thermarum DSM 5069]
Length=598

 Score = 36.6 bits (83),  Expect = 1.2, Method: Composition-based stats.
 Identities = 22/64 (35%), Positives = 37/64 (58%), Gaps = 10/64 (15%)

Query  68   PEVVEVLDKPITRADVYDLEQGLQDQVFDLLMPTAVEGSLSLDELLSDHFVRDLHARMF-  126
            P+++E++D  I  AD Y L  G       ++ P A+EG+L + E++ +H V  LH+  F 
Sbjct  444  PQILELIDSGIDFADSYMLGYG-------IMHPIALEGALKIKEVVYNH-VEGLHSSEFK  495

Query  127  -GPV  129
             GP+
Sbjct  496  HGPL  499


>gi|310789339|gb|EFQ24872.1| peptidase family C50 [Glomerella graminicola M1.001]
Length=2134

 Score = 35.4 bits (80),  Expect = 2.5, Method: Compositional matrix adjust.
 Identities = 22/67 (33%), Positives = 38/67 (57%), Gaps = 7/67 (10%)

Query  55   ETPLPHDELAALLPEVVEVLDKPITRADVYDLEQ------GLQDQVFDLLMPTAVEGSLS  108
            +TPLPH++L+ALL EV + L   + + DV +LE+        +  V  +L     +GS  
Sbjct  507  QTPLPHEQLSALLREVTDALQGTL-KGDVTELEELMVNLSAARRSVVGILASKTGDGSED  565

Query  109  LDELLSD  115
            + EL+++
Sbjct  566  VHELMNN  572


>gi|192359940|ref|YP_001981706.1| Fic family protein [Cellvibrio japonicus Ueda107]
 gi|190686105|gb|ACE83783.1| Fic family protein [Cellvibrio japonicus Ueda107]
Length=200

 Score = 35.0 bits (79),  Expect = 3.4, Method: Compositional matrix adjust.
 Identities = 30/77 (39%), Positives = 37/77 (49%), Gaps = 14/77 (18%)

Query  54   GETPLPHDELAAL-LPEVVEVLDKPITRADVYDLEQGLQDQVFDLLMPTAVEGSLSLDEL  112
            G TPL  DELA L  P V        TR ++  LEQ   +    L +    +G     E+
Sbjct  10   GATPLDPDELAGLKFPHVS-------TRGELDHLEQANIESGL-LWLKRGRKG-----EV  56

Query  113  LSDHFVRDLHARMFGPV  129
            L D FVR LH R+FG V
Sbjct  57   LDDQFVRTLHKRLFGEV  73


>gi|312963984|ref|ZP_07778455.1| mobile mystery protein B [Pseudomonas fluorescens WH6]
 gi|311282019|gb|EFQ60629.1| mobile mystery protein B [Pseudomonas fluorescens WH6]
Length=195

 Score = 35.0 bits (79),  Expect = 3.5, Method: Compositional matrix adjust.
 Identities = 25/83 (31%), Positives = 41/83 (50%), Gaps = 14/83 (16%)

Query  44   AVQMPLTPGYGETPLPHDELAALLPEVVEVLDKPITRADVYDLEQGLQDQVFDLLMPTAV  103
            A+++ L PG  +TPL  DE+A L P  +         A   +L++     +       A 
Sbjct  2    AIELELKPG--QTPLDPDEVAGLKPRHI---------ATQGELDEWEAQNILKASRWVAR  50

Query  104  EGSLSLDELLSDHFVRDLHARMF  126
            +  L   ++L+DHF R+LH +MF
Sbjct  51   QKKL---DVLNDHFCRELHVKMF  70


>gi|338740684|ref|YP_004677646.1| serine-glyoxylate aminotransferase [Hyphomicrobium sp. MC1]
 gi|337761247|emb|CCB67080.1| serine-glyoxylate aminotransferase [Hyphomicrobium sp. MC1]
Length=403

 Score = 34.7 bits (78),  Expect = 4.4, Method: Composition-based stats.
 Identities = 18/52 (35%), Positives = 25/52 (49%), Gaps = 4/52 (7%)

Query  1    MDCCEERGV----ARHKGLSQVGTPGCPRWSQAVSCRCSAYREAAVTAVQMP  48
            +D   E G+    ARH+ L++        W   + CR + Y   AVT VQMP
Sbjct  262  IDMINEEGLENVFARHRRLAEATRRAVRAWGFEIQCRDAKYYSPAVTTVQMP  313


>gi|326496719|dbj|BAJ98386.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length=730

 Score = 34.7 bits (78),  Expect = 4.9, Method: Composition-based stats.
 Identities = 23/53 (44%), Positives = 27/53 (51%), Gaps = 4/53 (7%)

Query  5    EERGVARHKGL--SQVGTPGCPRWSQAVSCRCSAYREAAVTAVQMPLTPGYGE  55
            E R VAR+ GL  + VG PGCP   +    R SA + A V  V  P  P  GE
Sbjct  512  ERRPVARYTGLKHANVGNPGCPSTPERCLSRGSAAKHADV--VITPCRPSTGE  562


>gi|293602773|ref|ZP_06685213.1| fic family toxin-antitoxin system [Achromobacter piechaudii ATCC 
43553]
 gi|292818789|gb|EFF77830.1| fic family toxin-antitoxin system [Achromobacter piechaudii ATCC 
43553]
Length=196

 Score = 34.3 bits (77),  Expect = 5.8, Method: Compositional matrix adjust.
 Identities = 24/73 (33%), Positives = 36/73 (50%), Gaps = 12/73 (16%)

Query  54   GETPLPHDELAALLPEVVEVLDKPITRADVYDLEQGLQDQVFDLLMPTAVEGSLSLDELL  113
            G+TPL  DE A L+PE +       T+ D+ D EQ       +LL        +   ++L
Sbjct  10   GQTPLDPDERAGLIPEHLS------TKGDLNDWEQE------NLLRAVRWLKRVRSQDVL  57

Query  114  SDHFVRDLHARMF  126
            ++ F R LH +MF
Sbjct  58   TEGFCRTLHLKMF  70



Lambda     K      H
   0.320    0.137    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128283502052


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40