BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1053c

Length=91
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15608193|ref|NP_215569.1|  hypothetical protein Rv1053c [Mycob...   191    2e-47
gi|288928980|ref|ZP_06422826.1|  conserved hypothetical protein [...  36.2    1.8  
gi|326664453|ref|XP_001919791.3|  PREDICTED: b-cell receptor CD22...  35.8    2.0  
gi|292610151|ref|XP_001344809.3|  PREDICTED: b-cell receptor CD22...  34.7    5.4  


>gi|15608193|ref|NP_215569.1| hypothetical protein Rv1053c [Mycobacterium tuberculosis H37Rv]
 gi|31792244|ref|NP_854737.1| hypothetical protein Mb1082c [Mycobacterium bovis AF2122/97]
 gi|121636982|ref|YP_977205.1| hypothetical protein BCG_1111c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 38 more sequence titles
 Length=91

 Score =  191 bits (486),  Expect = 2e-47, Method: Compositional matrix adjust.
 Identities = 91/91 (100%), Positives = 91/91 (100%), Gaps = 0/91 (0%)

Query  1   MDSHKVCMNNNTQLPTGPIIGVHPAVRDGVERVAYLDGDLLRCNTDVEFTSSPPPGPVLY  60
           MDSHKVCMNNNTQLPTGPIIGVHPAVRDGVERVAYLDGDLLRCNTDVEFTSSPPPGPVLY
Sbjct  1   MDSHKVCMNNNTQLPTGPIIGVHPAVRDGVERVAYLDGDLLRCNTDVEFTSSPPPGPVLY  60

Query  61  RTKHTRVEIADEMVTEKLIKRQRAFNSRRHQ  91
           RTKHTRVEIADEMVTEKLIKRQRAFNSRRHQ
Sbjct  61  RTKHTRVEIADEMVTEKLIKRQRAFNSRRHQ  91


>gi|288928980|ref|ZP_06422826.1| conserved hypothetical protein [Prevotella sp. oral taxon 317 
str. F0108]
 gi|288329964|gb|EFC68549.1| conserved hypothetical protein [Prevotella sp. oral taxon 317 
str. F0108]
Length=394

 Score = 36.2 bits (82),  Expect = 1.8, Method: Composition-based stats.
 Identities = 30/83 (37%), Positives = 41/83 (50%), Gaps = 9/83 (10%)

Query  15   PTGPIIGVHPAVRDGVERVAYLDGDLLRCNTDV-EFTSSPPPGPVLY---RTKHTRVEIA  70
            P G I  +   + + VERV+  +GD LR   ++  F +S P G + Y   R+K    +IA
Sbjct  63   PNGEISVITAPMTETVERVSAKEGDKLRKGDEILRFRTSSPDGKITYQQERSKEASAQIA  122

Query  71   DEMVTEKLIKRQ--RAFNSRRHQ  91
            D    E L K Q  RAF S   Q
Sbjct  123  D---LELLSKGQCPRAFASAARQ  142


>gi|326664453|ref|XP_001919791.3| PREDICTED: b-cell receptor CD22-like [Danio rerio]
Length=487

 Score = 35.8 bits (81),  Expect = 2.0, Method: Composition-based stats.
 Identities = 27/80 (34%), Positives = 33/80 (42%), Gaps = 11/80 (13%)

Query  2    DSHKVCMNNNTQLPTGPIIGVHPAVRDGV--------ERVAYLDGDLLRCNTDVEFTSSP  53
            D H      NT +  G   G+ P VR  V        ERV   D   L CN+  E T +P
Sbjct  107  DEHDYFFKFNTNVTKGRWTGI-PGVRLSVTDLQLESPERVTEGDSVRLTCNSSCELTDTP  165

Query  54   PPGPVLYRTKHTRVEIADEM  73
                + YR  HT   I DE+
Sbjct  166  TF--IWYRNSHTLTNIGDEL  183


>gi|292610151|ref|XP_001344809.3| PREDICTED: b-cell receptor CD22-like [Danio rerio]
Length=510

 Score = 34.7 bits (78),  Expect = 5.4, Method: Compositional matrix adjust.
 Identities = 26/89 (30%), Positives = 36/89 (41%), Gaps = 11/89 (12%)

Query  2    DSHKVCMNNNTQLPTGPIIGVHPAVRDGV--------ERVAYLDGDLLRCNTDVEFTSSP  53
            D H       T +  G +IG+ P VR  V        ERV   D   L C +    T +P
Sbjct  108  DEHDYYFRFTTNVTFGKVIGI-PGVRLSVTDLQLESPERVTEGDSVRLTCRSSCNLTDTP  166

Query  54   PPGPVLYRTKHTRVEIADEMVTEKLIKRQ  82
                + YR  HT   I DE+    + +R+
Sbjct  167  TF--IWYRNSHTLTNIGDELNIRSVSRRE  193



Lambda     K      H
   0.319    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128725229700


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40