BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1054

Length=104
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15840487|ref|NP_335524.1|  hypothetical protein MT1084 [Mycoba...   214    3e-54
gi|31792245|ref|NP_854738.1|  putative integrase (fragment) [Myco...   213    1e-53
gi|294995247|ref|ZP_06800938.1|  integrase [Mycobacterium tubercu...   212    1e-53
gi|289757138|ref|ZP_06516516.1|  integrase [Mycobacterium tubercu...   210    5e-53
gi|340626055|ref|YP_004744507.1|  phage integrase family protein ...   147    5e-34
gi|315443040|ref|YP_004075919.1|  site-specific recombinase XerD ...   141    4e-32
gi|126437019|ref|YP_001072710.1|  phage integrase family protein ...   132    2e-29
gi|240172534|ref|ZP_04751193.1|  phage integrase family protein [...   103    1e-20
gi|289761193|ref|ZP_06520571.1|  LOW QUALITY PROTEIN: hypothetica...  99.8    1e-19
gi|289750913|ref|ZP_06510291.1|  integrase [Mycobacterium tubercu...  88.6    3e-16
gi|340627319|ref|YP_004745771.1|  putative integrase (fragment) [...  87.4    6e-16
gi|15609446|ref|NP_216825.1|  hypothetical protein Rv2309c [Mycob...  87.4    7e-16
gi|298525794|ref|ZP_07013203.1|  conserved hypothetical protein [...  85.9    2e-15
gi|339753976|gb|AEJ93994.1|  gp69 [Mycobacterium phage Thibault]      66.6    1e-09
gi|339752103|gb|AEJ92138.1|  gp79 [Mycobacterium phage Optimus] >...  66.6    1e-09
gi|339783753|gb|AEK09465.1|  gp82 [Mycobacterium phage LittleE]       64.3    6e-09
gi|29566822|ref|NP_818386.1|  gp85 [Mycobacterium phage Omega] >g...  63.9    6e-09
gi|119869100|ref|YP_939052.1|  phage integrase family protein [My...  56.6    1e-06
gi|119717557|ref|YP_924522.1|  hypothetical protein Noca_3333 [No...  48.9    3e-04
gi|32264341|gb|AAP78666.1|  Int [Myxococcus phage Mx9]                38.9    0.23 
gi|298248916|ref|ZP_06972720.1|  bicupin, oxalate decarboxylase f...  37.4    0.65 
gi|333989988|ref|YP_004522602.1|  prophage integrase [Mycobacteri...  35.4    2.6  
gi|256826758|ref|YP_003150717.1|  site-specific recombinase XerC ...  35.4    2.6  
gi|86739910|ref|YP_480310.1|  phage integrase [Frankia sp. CcI3] ...  34.7    5.3  
gi|321473108|gb|EFX84076.1|  hypothetical protein DAPPUDRAFT_2231...  33.5    9.3  


>gi|15840487|ref|NP_335524.1| hypothetical protein MT1084 [Mycobacterium tuberculosis CDC1551]
 gi|148822264|ref|YP_001287018.1| integrase [Mycobacterium tuberculosis F11]
 gi|253799911|ref|YP_003032912.1| integrase [Mycobacterium tuberculosis KZN 1435]
 19 more sequence titles
 Length=118

 Score =  214 bits (546),  Expect = 3e-54, Method: Compositional matrix adjust.
 Identities = 104/104 (100%), Positives = 104/104 (100%), Gaps = 0/104 (0%)

Query  1    VTGKGIVESTTKTKRDRHVPVPEPVWRRLHAELPTDPNALVFPGRKGGFLPLGEYRWAFD  60
            VTGKGIVESTTKTKRDRHVPVPEPVWRRLHAELPTDPNALVFPGRKGGFLPLGEYRWAFD
Sbjct  15   VTGKGIVESTTKTKRDRHVPVPEPVWRRLHAELPTDPNALVFPGRKGGFLPLGEYRWAFD  74

Query  61   NAGDQVGIEGWYRTVWGTPRPRWRSAQALTSRSCNGSLDTQQRR  104
            NAGDQVGIEGWYRTVWGTPRPRWRSAQALTSRSCNGSLDTQQRR
Sbjct  75   NAGDQVGIEGWYRTVWGTPRPRWRSAQALTSRSCNGSLDTQQRR  118


>gi|31792245|ref|NP_854738.1| putative integrase (fragment) [Mycobacterium bovis AF2122/97]
 gi|57116816|ref|NP_215570.2| integrase [Mycobacterium tuberculosis H37Rv]
 gi|121636983|ref|YP_977206.1| putative integrase [Mycobacterium bovis BCG str. Pasteur 1173P2]
 31 more sequence titles
 Length=104

 Score =  213 bits (541),  Expect = 1e-53, Method: Compositional matrix adjust.
 Identities = 103/104 (99%), Positives = 104/104 (100%), Gaps = 0/104 (0%)

Query  1    VTGKGIVESTTKTKRDRHVPVPEPVWRRLHAELPTDPNALVFPGRKGGFLPLGEYRWAFD  60
            +TGKGIVESTTKTKRDRHVPVPEPVWRRLHAELPTDPNALVFPGRKGGFLPLGEYRWAFD
Sbjct  1    MTGKGIVESTTKTKRDRHVPVPEPVWRRLHAELPTDPNALVFPGRKGGFLPLGEYRWAFD  60

Query  61   NAGDQVGIEGWYRTVWGTPRPRWRSAQALTSRSCNGSLDTQQRR  104
            NAGDQVGIEGWYRTVWGTPRPRWRSAQALTSRSCNGSLDTQQRR
Sbjct  61   NAGDQVGIEGWYRTVWGTPRPRWRSAQALTSRSCNGSLDTQQRR  104


>gi|294995247|ref|ZP_06800938.1| integrase [Mycobacterium tuberculosis 210]
 gi|339297692|gb|AEJ49802.1| integrase [Mycobacterium tuberculosis CCDC5180]
Length=118

 Score =  212 bits (540),  Expect = 1e-53, Method: Compositional matrix adjust.
 Identities = 103/104 (99%), Positives = 103/104 (99%), Gaps = 0/104 (0%)

Query  1    VTGKGIVESTTKTKRDRHVPVPEPVWRRLHAELPTDPNALVFPGRKGGFLPLGEYRWAFD  60
            VTGKGIVESTTKTKRDRHVPVPEPVWRRLHAELPTDPNALVFPGRKGGFLPLGEYRWAFD
Sbjct  15   VTGKGIVESTTKTKRDRHVPVPEPVWRRLHAELPTDPNALVFPGRKGGFLPLGEYRWAFD  74

Query  61   NAGDQVGIEGWYRTVWGTPRPRWRSAQALTSRSCNGSLDTQQRR  104
            NAGDQVGIEGWYRTVW TPRPRWRSAQALTSRSCNGSLDTQQRR
Sbjct  75   NAGDQVGIEGWYRTVWDTPRPRWRSAQALTSRSCNGSLDTQQRR  118


>gi|289757138|ref|ZP_06516516.1| integrase [Mycobacterium tuberculosis T85]
 gi|289712702|gb|EFD76714.1| integrase [Mycobacterium tuberculosis T85]
 gi|326904718|gb|EGE51651.1| integrase [Mycobacterium tuberculosis W-148]
 gi|339294052|gb|AEJ46163.1| integrase [Mycobacterium tuberculosis CCDC5079]
Length=104

 Score =  210 bits (535),  Expect = 5e-53, Method: Compositional matrix adjust.
 Identities = 102/104 (99%), Positives = 103/104 (99%), Gaps = 0/104 (0%)

Query  1    VTGKGIVESTTKTKRDRHVPVPEPVWRRLHAELPTDPNALVFPGRKGGFLPLGEYRWAFD  60
            +TGKGIVESTTKTKRDRHVPVPEPVWRRLHAELPTDPNALVFPGRKGGFLPLGEYRWAFD
Sbjct  1    MTGKGIVESTTKTKRDRHVPVPEPVWRRLHAELPTDPNALVFPGRKGGFLPLGEYRWAFD  60

Query  61   NAGDQVGIEGWYRTVWGTPRPRWRSAQALTSRSCNGSLDTQQRR  104
            NAGDQVGIEGWYRTVW TPRPRWRSAQALTSRSCNGSLDTQQRR
Sbjct  61   NAGDQVGIEGWYRTVWDTPRPRWRSAQALTSRSCNGSLDTQQRR  104


>gi|340626055|ref|YP_004744507.1| phage integrase family protein [Mycobacterium canettii CIPT 140010059]
 gi|340004245|emb|CCC43386.1| phage integrase family protein [Mycobacterium canettii CIPT 140010059]
Length=403

 Score =  147 bits (371),  Expect = 5e-34, Method: Compositional matrix adjust.
 Identities = 69/70 (99%), Positives = 69/70 (99%), Gaps = 0/70 (0%)

Query  1    VTGKGIVESTTKTKRDRHVPVPEPVWRRLHAELPTDPNALVFPGRKGGFLPLGEYRWAFD  60
            VTGKGIVESTTKTKRDRHVPVPEPVWRRLHAELPTDPNALVFPGRKGGFLPLGEYRWAFD
Sbjct  256  VTGKGIVESTTKTKRDRHVPVPEPVWRRLHAELPTDPNALVFPGRKGGFLPLGEYRWAFD  315

Query  61   NAGDQVGIEG  70
            NA DQVGIEG
Sbjct  316  NACDQVGIEG  325


>gi|315443040|ref|YP_004075919.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315261343|gb|ADT98084.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
Length=403

 Score =  141 bits (355),  Expect = 4e-32, Method: Compositional matrix adjust.
 Identities = 65/70 (93%), Positives = 67/70 (96%), Gaps = 0/70 (0%)

Query  1    VTGKGIVESTTKTKRDRHVPVPEPVWRRLHAELPTDPNALVFPGRKGGFLPLGEYRWAFD  60
            VTGKGIVESTTKTKRDRHVPVPEPVW+RLHAELPTDPNALVFP RKGGFLPLGEYRWAFD
Sbjct  256  VTGKGIVESTTKTKRDRHVPVPEPVWKRLHAELPTDPNALVFPSRKGGFLPLGEYRWAFD  315

Query  61   NAGDQVGIEG  70
            NA  +VGIEG
Sbjct  316  NACAEVGIEG  325


>gi|126437019|ref|YP_001072710.1| phage integrase family protein [Mycobacterium sp. JLS]
 gi|126236819|gb|ABO00220.1| phage integrase family protein [Mycobacterium sp. JLS]
Length=424

 Score =  132 bits (332),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 60/70 (86%), Positives = 64/70 (92%), Gaps = 0/70 (0%)

Query  1    VTGKGIVESTTKTKRDRHVPVPEPVWRRLHAELPTDPNALVFPGRKGGFLPLGEYRWAFD  60
            VTGKGIVESTTKTKRDRHVPVPEPVW++L AELP DPNALVFP RKGGFLPLGEYRWAFD
Sbjct  277  VTGKGIVESTTKTKRDRHVPVPEPVWKKLKAELPADPNALVFPSRKGGFLPLGEYRWAFD  336

Query  61   NAGDQVGIEG  70
            NA   +GI+G
Sbjct  337  NACADIGIDG  346


>gi|240172534|ref|ZP_04751193.1| phage integrase family protein [Mycobacterium kansasii ATCC 12478]
Length=368

 Score =  103 bits (256),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 48/71 (68%), Positives = 54/71 (77%), Gaps = 0/71 (0%)

Query  1    VTGKGIVESTTKTKRDRHVPVPEPVWRRLHAELPTDPNALVFPGRKGGFLPLGEYRWAFD  60
            VTG+GIVESTTKT R RHVP+P PVW RL  ELP+DPNALVFP  +GG LP+ EYR AFD
Sbjct  216  VTGRGIVESTTKTNRARHVPIPGPVWDRLQPELPSDPNALVFPSHRGGHLPIEEYRRAFD  275

Query  61   NAGDQVGIEGW  71
               + VGI G 
Sbjct  276  KGCNAVGIAGL  286


>gi|289761193|ref|ZP_06520571.1| LOW QUALITY PROTEIN: hypothetical integrase [Mycobacterium tuberculosis 
GM 1503]
 gi|289708699|gb|EFD72715.1| LOW QUALITY PROTEIN: hypothetical integrase [Mycobacterium tuberculosis 
GM 1503]
Length=116

 Score = 99.8 bits (247),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 52/57 (92%), Positives = 52/57 (92%), Gaps = 2/57 (3%)

Query  1   VTGKGIVESTTKTKRDRHVPVPEPVWRRLHAELPTDPNALVFPGRKGGFLPLGEYRW  57
           VTGKGIVESTTKTKRDRHVPVPEPVWRRLHAELPTDPNAL  P RKG  LPLGEYRW
Sbjct  15  VTGKGIVESTTKTKRDRHVPVPEPVWRRLHAELPTDPNALC-PRRKGD-LPLGEYRW  69


>gi|289750913|ref|ZP_06510291.1| integrase [Mycobacterium tuberculosis T92]
 gi|289691500|gb|EFD58929.1| integrase [Mycobacterium tuberculosis T92]
Length=160

 Score = 88.6 bits (218),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 45/68 (67%), Positives = 49/68 (73%), Gaps = 2/68 (2%)

Query  1   VTGKGIVESTTKTKRDRHVPVPEPVWRRLHAELPTDPNALVFPGRKGGFLPLGEYRWAFD  60
           VTG GIVE+TT   R RHVPVPEPV  RL  ELPT+PNALVFP  +GG LP+ EYR AFD
Sbjct  10  VTGAGIVETTTN--RVRHVPVPEPVSERLRDELPTEPNALVFPSYRGGHLPIEEYRRAFD  67

Query  61  NAGDQVGI  68
                VGI
Sbjct  68  KGCKAVGI  75


>gi|340627319|ref|YP_004745771.1| putative integrase (fragment) [Mycobacterium canettii CIPT 140010059]
 gi|340005509|emb|CCC44670.1| putative integrase (fragment) [Mycobacterium canettii CIPT 140010059]
Length=151

 Score = 87.4 bits (215),  Expect = 6e-16, Method: Compositional matrix adjust.
 Identities = 44/68 (65%), Positives = 49/68 (73%), Gaps = 2/68 (2%)

Query  1   VTGKGIVESTTKTKRDRHVPVPEPVWRRLHAELPTDPNALVFPGRKGGFLPLGEYRWAFD  60
           +TG GIVE+TT   R RHVPVPEPV  RL  ELPT+PNALVFP  +GG LP+ EYR AFD
Sbjct  1   MTGAGIVETTTN--RVRHVPVPEPVSERLRDELPTEPNALVFPSYRGGHLPIEEYRRAFD  58

Query  61  NAGDQVGI  68
                VGI
Sbjct  59  KGCKAVGI  66


>gi|15609446|ref|NP_216825.1| hypothetical protein Rv2309c [Mycobacterium tuberculosis H37Rv]
 gi|15841807|ref|NP_336844.1| integrase, putative [Mycobacterium tuberculosis CDC1551]
 gi|31793491|ref|NP_855984.1| hypothetical protein Mb2335c [Mycobacterium bovis AF2122/97]
 66 more sequence titles
 Length=151

 Score = 87.4 bits (215),  Expect = 7e-16, Method: Compositional matrix adjust.
 Identities = 44/68 (65%), Positives = 49/68 (73%), Gaps = 2/68 (2%)

Query  1   VTGKGIVESTTKTKRDRHVPVPEPVWRRLHAELPTDPNALVFPGRKGGFLPLGEYRWAFD  60
           +TG GIVE+TT   R RHVPVPEPV  RL  ELPT+PNALVFP  +GG LP+ EYR AFD
Sbjct  1   MTGAGIVETTTN--RVRHVPVPEPVSERLRDELPTEPNALVFPSYRGGHLPIEEYRRAFD  58

Query  61  NAGDQVGI  68
                VGI
Sbjct  59  KGCKAVGI  66


>gi|298525794|ref|ZP_07013203.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|298495588|gb|EFI30882.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
Length=151

 Score = 85.9 bits (211),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 44/68 (65%), Positives = 48/68 (71%), Gaps = 2/68 (2%)

Query  1   VTGKGIVESTTKTKRDRHVPVPEPVWRRLHAELPTDPNALVFPGRKGGFLPLGEYRWAFD  60
           +TG GIVE+TT   R RHVPVPEPV  RL  ELPT PNALVFP  +GG LP+ EYR AFD
Sbjct  1   MTGAGIVETTTN--RVRHVPVPEPVSERLRDELPTAPNALVFPSYRGGHLPIEEYRRAFD  58

Query  61  NAGDQVGI  68
                VGI
Sbjct  59  KGCKAVGI  66


>gi|339753976|gb|AEJ93994.1| gp69 [Mycobacterium phage Thibault]
Length=409

 Score = 66.6 bits (161),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 32/56 (58%), Positives = 41/56 (74%), Gaps = 3/56 (5%)

Query  7    VESTTKTKRDRHVPVPEPVWRRLHAELPTDPNALVFPGRKGGFLPLGEYRWAFDNA  62
            VE  TKT R R +PVPE VW +L  ++P +P++L+FPGRK G +  GEYRWAFD A
Sbjct  266  VEKDTKTHRARFIPVPEVVWNKL--QMPANPDSLLFPGRK-GHITTGEYRWAFDRA  318


>gi|339752103|gb|AEJ92138.1| gp79 [Mycobacterium phage Optimus]
 gi|339782420|gb|AEK08143.1| gp86 [Mycobacterium phage Baka]
Length=409

 Score = 66.6 bits (161),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 32/56 (58%), Positives = 41/56 (74%), Gaps = 3/56 (5%)

Query  7    VESTTKTKRDRHVPVPEPVWRRLHAELPTDPNALVFPGRKGGFLPLGEYRWAFDNA  62
            VE  TKT R R +PVPE VW +L  ++P +P++L+FPGRK G +  GEYRWAFD A
Sbjct  266  VEKDTKTHRARFIPVPEVVWNKL--QMPANPDSLLFPGRK-GHITTGEYRWAFDRA  318


>gi|339783753|gb|AEK09465.1| gp82 [Mycobacterium phage LittleE]
Length=395

 Score = 64.3 bits (155),  Expect = 6e-09, Method: Compositional matrix adjust.
 Identities = 30/56 (54%), Positives = 41/56 (74%), Gaps = 3/56 (5%)

Query  7    VESTTKTKRDRHVPVPEPVWRRLHAELPTDPNALVFPGRKGGFLPLGEYRWAFDNA  62
            VE  TKT R R +P+P+ VW ++  ++P +P+ALVFPGR+ G +  GEYRWAFD A
Sbjct  247  VEKDTKTHRARFIPIPDVVWNKI--QMPANPDALVFPGRR-GHITNGEYRWAFDGA  299


>gi|29566822|ref|NP_818386.1| gp85 [Mycobacterium phage Omega]
 gi|29425547|gb|AAN12729.1| gp85 [Mycobacterium phage Omega]
Length=424

 Score = 63.9 bits (154),  Expect = 6e-09, Method: Compositional matrix adjust.
 Identities = 30/56 (54%), Positives = 41/56 (74%), Gaps = 3/56 (5%)

Query  7    VESTTKTKRDRHVPVPEPVWRRLHAELPTDPNALVFPGRKGGFLPLGEYRWAFDNA  62
            VE  TKT R R +P+P+ VW ++  ++P +P+ALVFPGR+ G +  GEYRWAFD A
Sbjct  276  VEKDTKTHRARFIPIPDVVWNKI--QMPANPDALVFPGRR-GHITNGEYRWAFDGA  328


>gi|119869100|ref|YP_939052.1| phage integrase family protein [Mycobacterium sp. KMS]
 gi|119695189|gb|ABL92262.1| phage integrase family protein [Mycobacterium sp. KMS]
Length=407

 Score = 56.6 bits (135),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 31/71 (44%), Positives = 42/71 (60%), Gaps = 1/71 (1%)

Query  1    VTGKGIVESTTKTKRDRHVPVPEPVWRRLHAELPTD-PNALVFPGRKGGFLPLGEYRWAF  59
            VTG+G+VE  TK    R VPVP+ +   +  E+     + L+FP R+GG+L  GE RW F
Sbjct  255  VTGQGLVEGPTKNHSARTVPVPKFLAPLIETEVGGRVDDELLFPSRRGGYLTEGEVRWVF  314

Query  60   DNAGDQVGIEG  70
            D A   VG+ G
Sbjct  315  DAAAVAVGVTG  325


>gi|119717557|ref|YP_924522.1| hypothetical protein Noca_3333 [Nocardioides sp. JS614]
 gi|119538218|gb|ABL82835.1| hypothetical protein Noca_3333 [Nocardioides sp. JS614]
Length=182

 Score = 48.9 bits (115),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 38/96 (40%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query  1    VTGKGIVESTTKTKRDRHVPVPEPVWRRLHAELP-----TDPNALVFPG-RKGGFLPLGE  54
            V G G+V  +TKT + R VP+P    R L AEL        P+ LVF G R G  L +  
Sbjct  91   VQGHGLVWGSTKTHQRREVPIP----RFLAAELSQHVMGKQPDDLVFAGIRNGQPLRVST  146

Query  55   YRWAFDNAGDQVGIEGWYRTVWGTPRPRWRSAQALT  90
            +R AF  A   +G+   +    GTP P WRS  A T
Sbjct  147  FRTAFSAAARTIGVLDLHPHRSGTPPPAWRSPAAPT  182


>gi|32264341|gb|AAP78666.1| Int [Myxococcus phage Mx9]
Length=548

 Score = 38.9 bits (89),  Expect = 0.23, Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 24/38 (64%), Gaps = 0/38 (0%)

Query  10   TTKTKRDRHVPVPEPVWRRLHAELPTDPNALVFPGRKG  47
            TTKT R+R VPVP+ +W  L   +   P+ LVFP  KG
Sbjct  263  TTKTGRERRVPVPDELWPVLLDAMQASPSDLVFPNAKG  300


>gi|298248916|ref|ZP_06972720.1| bicupin, oxalate decarboxylase family [Ktedonobacter racemifer 
DSM 44963]
 gi|297546920|gb|EFH80787.1| bicupin, oxalate decarboxylase family [Ktedonobacter racemifer 
DSM 44963]
Length=411

 Score = 37.4 bits (85),  Expect = 0.65, Method: Compositional matrix adjust.
 Identities = 31/107 (29%), Positives = 45/107 (43%), Gaps = 13/107 (12%)

Query  1    VTGKGIVESTTKTKRDRHVPVPEPVWRRLHAELP---------TDPNALVFPGRKGGFLP  51
            +T    V   T T  D   PVPEP+   L A  P          +P+ L  P    G +P
Sbjct  21   ITSVPAVAHATSTPADE--PVPEPIEGNLGATDPGPRNIALDEMNPDTLAPPTTDAGIMP  78

Query  52   LGEYRWAFDNAGDQVGIEGWYRTVWGTPRPRWRSAQALTSRSCNGSL  98
                +++F NA +++   GW R V  T  P   S   +T R   G++
Sbjct  79   --NLKFSFGNAHNRLANGGWARQVTVTELPVSTSVAGVTMRLKEGAV  123


>gi|333989988|ref|YP_004522602.1| prophage integrase [Mycobacterium sp. JDM601]
 gi|333485956|gb|AEF35348.1| prophage integrase [Mycobacterium sp. JDM601]
Length=349

 Score = 35.4 bits (80),  Expect = 2.6, Method: Compositional matrix adjust.
 Identities = 21/41 (52%), Positives = 24/41 (59%), Gaps = 1/41 (2%)

Query  11   TKTKRDRHVPVPEPVWRRLHAELPTDP-NALVFPGRKGGFL  50
            TKT   R VPVP+ V  R+ AE       ALVFPG  GG+L
Sbjct  222  TKTYHRRSVPVPQFVLNRIKAESSGKGREALVFPGPDGGYL  262


>gi|256826758|ref|YP_003150717.1| site-specific recombinase XerC [Cryptobacterium curtum DSM 15641]
 gi|256582901|gb|ACU94035.1| site-specific recombinase XerC [Cryptobacterium curtum DSM 15641]
Length=381

 Score = 35.4 bits (80),  Expect = 2.6, Method: Composition-based stats.
 Identities = 19/45 (43%), Positives = 24/45 (54%), Gaps = 0/45 (0%)

Query  2    TGKGIVESTTKTKRDRHVPVPEPVWRRLHAELPTDPNALVFPGRK  46
            T KG + STTK  R R V +PE +  RLH   P     L + GR+
Sbjct  229  TSKGTIRSTTKNGRARTVHMPESLLARLHKIAPKSGALLQWDGRR  273


>gi|86739910|ref|YP_480310.1| phage integrase [Frankia sp. CcI3]
 gi|86566772|gb|ABD10581.1| phage integrase [Frankia sp. CcI3]
Length=394

 Score = 34.7 bits (78),  Expect = 5.3, Method: Compositional matrix adjust.
 Identities = 23/61 (38%), Positives = 33/61 (55%), Gaps = 5/61 (8%)

Query  1    VTGKGIVESTTKTKRD-RHVPVPEPV--WRRLHAE--LPTDPNALVFPGRKGGFLPLGEY  55
            + G+G+V    K++   R V +P  +  W R+H    +  DP A VF G KGGFL  G +
Sbjct  231  IGGQGVVLGPPKSRAGVRTVSLPAVILPWLRIHLAEYVADDPAAFVFTGPKGGFLRRGNF  290

Query  56   R  56
            R
Sbjct  291  R  291


>gi|321473108|gb|EFX84076.1| hypothetical protein DAPPUDRAFT_223154 [Daphnia pulex]
Length=636

 Score = 33.5 bits (75),  Expect = 9.3, Method: Composition-based stats.
 Identities = 24/87 (28%), Positives = 38/87 (44%), Gaps = 11/87 (12%)

Query  5    GIVESTTKTKRDRHVPVPEPVWRRLHAELPTDPNALVFPGRKGGFLPLGEYRWAFDNAGD  64
            G +ES  K KR         + R  H+        +V+ GRKG  +PLG+  +      +
Sbjct  364  GTIESRLKDKR---------LARMYHSLHLIQSRLIVYGGRKGPCMPLGDLGFIDTERNE  414

Query  65   QVGIEGWYRTVWGTPRPRWRSAQALTS  91
               ++G     W  P PRWR A ++ +
Sbjct  415  IEWLDGQPENGW--PEPRWRHASSIIA  439



Lambda     K      H
   0.318    0.137    0.459 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 127350764394


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40