BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1055

Length=44
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|148660839|ref|YP_001282362.1|  putative integrase [Mycobacteri...  93.2    1e-17
gi|340626055|ref|YP_004744507.1|  phage integrase family protein ...  92.8    1e-17
gi|31792246|ref|NP_854739.1|  hypothetical protein Mb1084 [Mycoba...  91.3    4e-17
gi|340627319|ref|YP_004745771.1|  putative integrase (fragment) [...  35.0    4.1  
gi|15609446|ref|NP_216825.1|  hypothetical protein Rv2309c [Mycob...  34.7    4.3  
gi|298525794|ref|ZP_07013203.1|  conserved hypothetical protein [...  34.7    4.5  
gi|289750913|ref|ZP_06510291.1|  integrase [Mycobacterium tubercu...  34.7    5.0  


>gi|148660839|ref|YP_001282362.1| putative integrase [Mycobacterium tuberculosis H37Ra]
 gi|148504991|gb|ABQ72800.1| putative integrase [Mycobacterium tuberculosis H37Ra]
Length=92

 Score = 93.2 bits (230),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 44/44 (100%), Positives = 44/44 (100%), Gaps = 0/44 (0%)

Query  1   MTLDRHGHLLNDDLAVWPMRCAKSSRTLRYHCGMRRRNRVGLRA  44
           MTLDRHGHLLNDDLAVWPMRCAKSSRTLRYHCGMRRRNRVGLRA
Sbjct  49  MTLDRHGHLLNDDLAVWPMRCAKSSRTLRYHCGMRRRNRVGLRA  92


>gi|340626055|ref|YP_004744507.1| phage integrase family protein [Mycobacterium canettii CIPT 140010059]
 gi|340004245|emb|CCC43386.1| phage integrase family protein [Mycobacterium canettii CIPT 140010059]
Length=403

 Score = 92.8 bits (229),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 43/44 (98%), Positives = 43/44 (98%), Gaps = 0/44 (0%)

Query  1    MTLDRHGHLLNDDLAVWPMRCAKSSRTLRYHCGMRRRNRVGLRA  44
            MTLDRHGHLLNDDLAVWPMRCAKSSRTLRYHCGMRRRNRVGL A
Sbjct  360  MTLDRHGHLLNDDLAVWPMRCAKSSRTLRYHCGMRRRNRVGLPA  403


>gi|31792246|ref|NP_854739.1| hypothetical protein Mb1084 [Mycobacterium bovis AF2122/97]
 gi|57116817|ref|NP_215571.2| hypothetical protein Rv1055 [Mycobacterium tuberculosis H37Rv]
 gi|121636984|ref|YP_977207.1| putative integrase [Mycobacterium bovis BCG str. Pasteur 1173P2]
 31 more sequence titles
 Length=44

 Score = 91.3 bits (225),  Expect = 4e-17, Method: Compositional matrix adjust.
 Identities = 44/44 (100%), Positives = 44/44 (100%), Gaps = 0/44 (0%)

Query  1   MTLDRHGHLLNDDLAVWPMRCAKSSRTLRYHCGMRRRNRVGLRA  44
           MTLDRHGHLLNDDLAVWPMRCAKSSRTLRYHCGMRRRNRVGLRA
Sbjct  1   MTLDRHGHLLNDDLAVWPMRCAKSSRTLRYHCGMRRRNRVGLRA  44


>gi|340627319|ref|YP_004745771.1| putative integrase (fragment) [Mycobacterium canettii CIPT 140010059]
 gi|340005509|emb|CCC44670.1| putative integrase (fragment) [Mycobacterium canettii CIPT 140010059]
Length=151

 Score = 35.0 bits (79),  Expect = 4.1, Method: Compositional matrix adjust.
 Identities = 20/36 (56%), Positives = 24/36 (67%), Gaps = 8/36 (22%)

Query  1    MTLDRHGHLLNDDLA------VWPMRCAKSSRTLRY  30
            MTLDRHGHLL+DDLA      V  ++ A +S  LRY
Sbjct  103  MTLDRHGHLLSDDLAGVAGLLVQAIKSAAAS--LRY  136


>gi|15609446|ref|NP_216825.1| hypothetical protein Rv2309c [Mycobacterium tuberculosis H37Rv]
 gi|15841807|ref|NP_336844.1| integrase, putative [Mycobacterium tuberculosis CDC1551]
 gi|31793491|ref|NP_855984.1| hypothetical protein Mb2335c [Mycobacterium bovis AF2122/97]
 66 more sequence titles
 Length=151

 Score = 34.7 bits (78),  Expect = 4.3, Method: Compositional matrix adjust.
 Identities = 20/36 (56%), Positives = 24/36 (67%), Gaps = 8/36 (22%)

Query  1    MTLDRHGHLLNDDLA------VWPMRCAKSSRTLRY  30
            MTLDRHGHLL+DDLA      V  ++ A +S  LRY
Sbjct  103  MTLDRHGHLLSDDLAGVAGLLVQAIKSAAAS--LRY  136


>gi|298525794|ref|ZP_07013203.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|298495588|gb|EFI30882.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
Length=151

 Score = 34.7 bits (78),  Expect = 4.5, Method: Compositional matrix adjust.
 Identities = 20/36 (56%), Positives = 24/36 (67%), Gaps = 8/36 (22%)

Query  1    MTLDRHGHLLNDDLA------VWPMRCAKSSRTLRY  30
            MTLDRHGHLL+DDLA      V  ++ A +S  LRY
Sbjct  103  MTLDRHGHLLSDDLAGVAGLLVQAIKSAAAS--LRY  136


>gi|289750913|ref|ZP_06510291.1| integrase [Mycobacterium tuberculosis T92]
 gi|289691500|gb|EFD58929.1| integrase [Mycobacterium tuberculosis T92]
Length=160

 Score = 34.7 bits (78),  Expect = 5.0, Method: Compositional matrix adjust.
 Identities = 20/36 (56%), Positives = 24/36 (67%), Gaps = 8/36 (22%)

Query  1    MTLDRHGHLLNDDLA------VWPMRCAKSSRTLRY  30
            MTLDRHGHLL+DDLA      V  ++ A +S  LRY
Sbjct  112  MTLDRHGHLLSDDLAGVAGLLVQAIKSAAAS--LRY  145



Lambda     K      H
   0.331    0.139    0.472 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128588243264


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40