BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1078
Length=240
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608218|ref|NP_215594.1| proline-rich antigen [Mycobacterium... 462 1e-128
gi|31792269|ref|NP_854762.1| proline-rich antigen [Mycobacterium... 461 4e-128
gi|289761216|ref|ZP_06520594.1| proline-rich antigen pra [Mycoba... 461 4e-128
gi|289749610|ref|ZP_06508988.1| proline-rich antigen pra [Mycoba... 340 1e-91
gi|298524576|ref|ZP_07011985.1| predicted protein [Mycobacterium... 331 5e-89
gi|254363989|ref|ZP_04980035.1| proline-rich antigen pra [Mycoba... 325 4e-87
gi|296169942|ref|ZP_06851551.1| proline-rich antigen [Mycobacter... 244 1e-62
gi|342861669|ref|ZP_08718315.1| Pra [Mycobacterium colombiense C... 238 7e-61
gi|15828288|ref|NP_302551.1| proline rich antigenic protein [Myc... 233 2e-59
gi|44415|emb|CAA46515.1| proline-rich antigen [Mycobacterium lep... 230 1e-58
gi|336461454|gb|EGO40324.1| hypothetical protein MAPs_30340 [Myc... 229 3e-58
gi|41407123|ref|NP_959959.1| Pra [Mycobacterium avium subsp. par... 228 5e-58
gi|118463979|ref|YP_880448.1| Pra protein [Mycobacterium avium 1... 227 1e-57
gi|240170289|ref|ZP_04748948.1| hypothetical protein MkanA1_1333... 213 3e-53
gi|254774085|ref|ZP_05215601.1| Pra [Mycobacterium avium subsp. ... 209 2e-52
gi|333989664|ref|YP_004522278.1| proline rich antigenic protein ... 191 5e-47
gi|120405624|ref|YP_955453.1| RDD domain-containing protein [Myc... 154 9e-36
gi|118470060|ref|YP_889513.1| RDD family protein [Mycobacterium ... 148 7e-34
gi|315443098|ref|YP_004075977.1| hypothetical protein Mspyr1_146... 135 6e-30
gi|145222633|ref|YP_001133311.1| RDD domain-containing protein [... 132 5e-29
gi|240170812|ref|ZP_04749471.1| hypothetical protein MkanA1_1597... 117 1e-24
gi|32351079|gb|AAP76186.1| proline-rich antigen [Mycobacterium l... 116 4e-24
gi|32351081|gb|AAP76187.1| proline-rich antigen [Mycobacterium l... 115 8e-24
gi|317507687|ref|ZP_07965394.1| RDD family protein [Segniliparus... 113 3e-23
gi|169628289|ref|YP_001701938.1| proline-rich antigen [Mycobacte... 111 1e-22
gi|312195036|ref|YP_004015097.1| hypothetical protein FraEuI1c_1... 109 4e-22
gi|300788454|ref|YP_003768745.1| RDD domain-containing protein [... 108 8e-22
gi|119718777|ref|YP_925742.1| RDD domain-containing protein [Noc... 106 3e-21
gi|256374850|ref|YP_003098510.1| hypothetical protein Amir_0701 ... 102 6e-20
gi|182436508|ref|YP_001824227.1| hypothetical protein SGR_2715 [... 97.4 1e-18
gi|291447177|ref|ZP_06586567.1| RDD domain containing protein [S... 96.3 3e-18
gi|239990166|ref|ZP_04710830.1| hypothetical protein SrosN1_2286... 95.9 5e-18
gi|297201861|ref|ZP_06919258.1| conserved hypothetical protein [... 89.7 3e-16
gi|284028931|ref|YP_003378862.1| RDD domain containing protein [... 88.6 7e-16
gi|302528831|ref|ZP_07281173.1| predicted protein [Streptomyces ... 87.8 1e-15
gi|326329430|ref|ZP_08195754.1| proline-rich antigen [Nocardioid... 85.1 8e-15
gi|309812586|ref|ZP_07706331.1| RDD family protein [Dermacoccus ... 82.8 3e-14
gi|269129002|ref|YP_003302372.1| RDD domain containing protein [... 80.5 2e-13
gi|226304004|ref|YP_002763962.1| hypothetical protein RER_05150 ... 75.5 6e-12
gi|284028930|ref|YP_003378861.1| RDD domain containing protein [... 75.5 6e-12
gi|229494804|ref|ZP_04388560.1| RDD domain containing protein [R... 73.2 3e-11
gi|344265080|ref|XP_003404615.1| PREDICTED: protein diaphanous h... 56.2 4e-06
gi|189233571|ref|XP_967872.2| PREDICTED: similar to AGAP001894-P... 48.5 7e-04
gi|336179278|ref|YP_004584653.1| serine/threonine protein kinase... 43.1 0.033
>gi|15608218|ref|NP_215594.1| proline-rich antigen [Mycobacterium tuberculosis H37Rv]
gi|15840514|ref|NP_335551.1| proline-rich antigen [Mycobacterium tuberculosis CDC1551]
gi|148660863|ref|YP_001282386.1| putative proline rich antigen-like protein [Mycobacterium tuberculosis
H37Ra]
26 more sequence titles
Length=240
Score = 462 bits (1190), Expect = 1e-128, Method: Compositional matrix adjust.
Identities = 240/240 (100%), Positives = 240/240 (100%), Gaps = 0/240 (0%)
Query 1 MTEQPPPGGSYPPPPPPPGPSGGHEPPPAAPPGGSGYAPPPPPSSGSGYPPPPPPPGGGA 60
MTEQPPPGGSYPPPPPPPGPSGGHEPPPAAPPGGSGYAPPPPPSSGSGYPPPPPPPGGGA
Sbjct 1 MTEQPPPGGSYPPPPPPPGPSGGHEPPPAAPPGGSGYAPPPPPSSGSGYPPPPPPPGGGA 60
Query 61 YPPPPPSAGGYAPPPPGPAIRTMPTESYTPWITRVLAAFIDWAPYVVLVGIGWVIMLVTQ 120
YPPPPPSAGGYAPPPPGPAIRTMPTESYTPWITRVLAAFIDWAPYVVLVGIGWVIMLVTQ
Sbjct 61 YPPPPPSAGGYAPPPPGPAIRTMPTESYTPWITRVLAAFIDWAPYVVLVGIGWVIMLVTQ 120
Query 121 TSSCVTSISEYDVGQFCVSQPSMIGQLVQWLLSVGGLAYLVWNYGYRQGTIGSSIGKSVL 180
TSSCVTSISEYDVGQFCVSQPSMIGQLVQWLLSVGGLAYLVWNYGYRQGTIGSSIGKSVL
Sbjct 121 TSSCVTSISEYDVGQFCVSQPSMIGQLVQWLLSVGGLAYLVWNYGYRQGTIGSSIGKSVL 180
Query 181 KFKVVSETTGQPIGFGMSVVRQLAHFIDAIICFVGFLFPLWDAKRQTLADKIMTTVCVPI 240
KFKVVSETTGQPIGFGMSVVRQLAHFIDAIICFVGFLFPLWDAKRQTLADKIMTTVCVPI
Sbjct 181 KFKVVSETTGQPIGFGMSVVRQLAHFIDAIICFVGFLFPLWDAKRQTLADKIMTTVCVPI 240
>gi|31792269|ref|NP_854762.1| proline-rich antigen [Mycobacterium bovis AF2122/97]
gi|121637007|ref|YP_977230.1| hypothetical protein BCG_1136 [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224989480|ref|YP_002644167.1| putative proline-rich antigen homolog [Mycobacterium bovis BCG
str. Tokyo 172]
18 more sequence titles
Length=240
Score = 461 bits (1186), Expect = 4e-128, Method: Compositional matrix adjust.
Identities = 239/240 (99%), Positives = 239/240 (99%), Gaps = 0/240 (0%)
Query 1 MTEQPPPGGSYPPPPPPPGPSGGHEPPPAAPPGGSGYAPPPPPSSGSGYPPPPPPPGGGA 60
MTEQPPPGGSYPPPPPPPGPSGGHEPPPAAPPGGSGYAPPPPPSSGSGYPPPPPPPGGGA
Sbjct 1 MTEQPPPGGSYPPPPPPPGPSGGHEPPPAAPPGGSGYAPPPPPSSGSGYPPPPPPPGGGA 60
Query 61 YPPPPPSAGGYAPPPPGPAIRTMPTESYTPWITRVLAAFIDWAPYVVLVGIGWVIMLVTQ 120
YPPPPPSAGGYAPPPPGPAIRTMPTESYTPWITRVLAAFIDWAPYVVLVGIGWVIMLVTQ
Sbjct 61 YPPPPPSAGGYAPPPPGPAIRTMPTESYTPWITRVLAAFIDWAPYVVLVGIGWVIMLVTQ 120
Query 121 TSSCVTSISEYDVGQFCVSQPSMIGQLVQWLLSVGGLAYLVWNYGYRQGTIGSSIGKSVL 180
TSSCVTSISEYDVGQFCVSQPSMIGQLVQWLLSVGGLAYLVWNYGYRQGT GSSIGKSVL
Sbjct 121 TSSCVTSISEYDVGQFCVSQPSMIGQLVQWLLSVGGLAYLVWNYGYRQGTTGSSIGKSVL 180
Query 181 KFKVVSETTGQPIGFGMSVVRQLAHFIDAIICFVGFLFPLWDAKRQTLADKIMTTVCVPI 240
KFKVVSETTGQPIGFGMSVVRQLAHFIDAIICFVGFLFPLWDAKRQTLADKIMTTVCVPI
Sbjct 181 KFKVVSETTGQPIGFGMSVVRQLAHFIDAIICFVGFLFPLWDAKRQTLADKIMTTVCVPI 240
>gi|289761216|ref|ZP_06520594.1| proline-rich antigen pra [Mycobacterium tuberculosis GM 1503]
gi|289708722|gb|EFD72738.1| proline-rich antigen pra [Mycobacterium tuberculosis GM 1503]
Length=240
Score = 461 bits (1186), Expect = 4e-128, Method: Compositional matrix adjust.
Identities = 239/240 (99%), Positives = 240/240 (100%), Gaps = 0/240 (0%)
Query 1 MTEQPPPGGSYPPPPPPPGPSGGHEPPPAAPPGGSGYAPPPPPSSGSGYPPPPPPPGGGA 60
MT+QPPPGGSYPPPPPPPGPSGGHEPPPAAPPGGSGYAPPPPPSSGSGYPPPPPPPGGGA
Sbjct 1 MTKQPPPGGSYPPPPPPPGPSGGHEPPPAAPPGGSGYAPPPPPSSGSGYPPPPPPPGGGA 60
Query 61 YPPPPPSAGGYAPPPPGPAIRTMPTESYTPWITRVLAAFIDWAPYVVLVGIGWVIMLVTQ 120
YPPPPPSAGGYAPPPPGPAIRTMPTESYTPWITRVLAAFIDWAPYVVLVGIGWVIMLVTQ
Sbjct 61 YPPPPPSAGGYAPPPPGPAIRTMPTESYTPWITRVLAAFIDWAPYVVLVGIGWVIMLVTQ 120
Query 121 TSSCVTSISEYDVGQFCVSQPSMIGQLVQWLLSVGGLAYLVWNYGYRQGTIGSSIGKSVL 180
TSSCVTSISEYDVGQFCVSQPSMIGQLVQWLLSVGGLAYLVWNYGYRQGTIGSSIGKSVL
Sbjct 121 TSSCVTSISEYDVGQFCVSQPSMIGQLVQWLLSVGGLAYLVWNYGYRQGTIGSSIGKSVL 180
Query 181 KFKVVSETTGQPIGFGMSVVRQLAHFIDAIICFVGFLFPLWDAKRQTLADKIMTTVCVPI 240
KFKVVSETTGQPIGFGMSVVRQLAHFIDAIICFVGFLFPLWDAKRQTLADKIMTTVCVPI
Sbjct 181 KFKVVSETTGQPIGFGMSVVRQLAHFIDAIICFVGFLFPLWDAKRQTLADKIMTTVCVPI 240
>gi|289749610|ref|ZP_06508988.1| proline-rich antigen pra [Mycobacterium tuberculosis T92]
gi|289690197|gb|EFD57626.1| proline-rich antigen pra [Mycobacterium tuberculosis T92]
Length=194
Score = 340 bits (871), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 167/168 (99%), Positives = 167/168 (99%), Gaps = 0/168 (0%)
Query 73 PPPPGPAIRTMPTESYTPWITRVLAAFIDWAPYVVLVGIGWVIMLVTQTSSCVTSISEYD 132
PPPPGPAIRTMPTESYTPWITRVLAAFIDWAPYVVLVGIGWVIMLVTQTSSCVTSISEYD
Sbjct 27 PPPPGPAIRTMPTESYTPWITRVLAAFIDWAPYVVLVGIGWVIMLVTQTSSCVTSISEYD 86
Query 133 VGQFCVSQPSMIGQLVQWLLSVGGLAYLVWNYGYRQGTIGSSIGKSVLKFKVVSETTGQP 192
VGQFCVSQPSMIGQLVQWLLSVGGLAYLVWNYGYRQGT GSSIGKSVLKFKVVSETTGQP
Sbjct 87 VGQFCVSQPSMIGQLVQWLLSVGGLAYLVWNYGYRQGTTGSSIGKSVLKFKVVSETTGQP 146
Query 193 IGFGMSVVRQLAHFIDAIICFVGFLFPLWDAKRQTLADKIMTTVCVPI 240
IGFGMSVVRQLAHFIDAIICFVGFLFPLWDAKRQTLADKIMTTVCVPI
Sbjct 147 IGFGMSVVRQLAHFIDAIICFVGFLFPLWDAKRQTLADKIMTTVCVPI 194
>gi|298524576|ref|ZP_07011985.1| predicted protein [Mycobacterium tuberculosis 94_M4241A]
gi|308371854|ref|ZP_07426463.2| proline-rich antigen pra [Mycobacterium tuberculosis SUMu004]
gi|308373026|ref|ZP_07430776.2| proline-rich antigen pra [Mycobacterium tuberculosis SUMu005]
7 more sequence titles
Length=245
Score = 331 bits (849), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 161/161 (100%), Positives = 161/161 (100%), Gaps = 0/161 (0%)
Query 80 IRTMPTESYTPWITRVLAAFIDWAPYVVLVGIGWVIMLVTQTSSCVTSISEYDVGQFCVS 139
IRTMPTESYTPWITRVLAAFIDWAPYVVLVGIGWVIMLVTQTSSCVTSISEYDVGQFCVS
Sbjct 85 IRTMPTESYTPWITRVLAAFIDWAPYVVLVGIGWVIMLVTQTSSCVTSISEYDVGQFCVS 144
Query 140 QPSMIGQLVQWLLSVGGLAYLVWNYGYRQGTIGSSIGKSVLKFKVVSETTGQPIGFGMSV 199
QPSMIGQLVQWLLSVGGLAYLVWNYGYRQGTIGSSIGKSVLKFKVVSETTGQPIGFGMSV
Sbjct 145 QPSMIGQLVQWLLSVGGLAYLVWNYGYRQGTIGSSIGKSVLKFKVVSETTGQPIGFGMSV 204
Query 200 VRQLAHFIDAIICFVGFLFPLWDAKRQTLADKIMTTVCVPI 240
VRQLAHFIDAIICFVGFLFPLWDAKRQTLADKIMTTVCVPI
Sbjct 205 VRQLAHFIDAIICFVGFLFPLWDAKRQTLADKIMTTVCVPI 245
>gi|254363989|ref|ZP_04980035.1| proline-rich antigen pra [Mycobacterium tuberculosis str. Haarlem]
gi|134149503|gb|EBA41548.1| proline-rich antigen pra [Mycobacterium tuberculosis str. Haarlem]
Length=158
Score = 325 bits (832), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 158/158 (100%), Positives = 158/158 (100%), Gaps = 0/158 (0%)
Query 83 MPTESYTPWITRVLAAFIDWAPYVVLVGIGWVIMLVTQTSSCVTSISEYDVGQFCVSQPS 142
MPTESYTPWITRVLAAFIDWAPYVVLVGIGWVIMLVTQTSSCVTSISEYDVGQFCVSQPS
Sbjct 1 MPTESYTPWITRVLAAFIDWAPYVVLVGIGWVIMLVTQTSSCVTSISEYDVGQFCVSQPS 60
Query 143 MIGQLVQWLLSVGGLAYLVWNYGYRQGTIGSSIGKSVLKFKVVSETTGQPIGFGMSVVRQ 202
MIGQLVQWLLSVGGLAYLVWNYGYRQGTIGSSIGKSVLKFKVVSETTGQPIGFGMSVVRQ
Sbjct 61 MIGQLVQWLLSVGGLAYLVWNYGYRQGTIGSSIGKSVLKFKVVSETTGQPIGFGMSVVRQ 120
Query 203 LAHFIDAIICFVGFLFPLWDAKRQTLADKIMTTVCVPI 240
LAHFIDAIICFVGFLFPLWDAKRQTLADKIMTTVCVPI
Sbjct 121 LAHFIDAIICFVGFLFPLWDAKRQTLADKIMTTVCVPI 158
>gi|296169942|ref|ZP_06851551.1| proline-rich antigen [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295895406|gb|EFG75111.1| proline-rich antigen [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=166
Score = 244 bits (622), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 112/158 (71%), Positives = 133/158 (85%), Gaps = 0/158 (0%)
Query 83 MPTESYTPWITRVLAAFIDWAPYVVLVGIGWVIMLVTQTSSCVTSISEYDVGQFCVSQPS 142
MPTESYTPW+TR+ A ID PY V+ GIG I++ TQ +SC+T +++Y V Q+CV+Q S
Sbjct 1 MPTESYTPWLTRLAAFIIDILPYAVVHGIGTGILVATQQTSCITDVTQYSVNQYCVTQNS 60
Query 143 MIGQLVQWLLSVGGLAYLVWNYGYRQGTIGSSIGKSVLKFKVVSETTGQPIGFGMSVVRQ 202
+G QWL S+ GL YL+WNYGYRQGT GSS+GKSV+KFKVVSE TGQPIGFGMSVVR
Sbjct 61 TLGLAAQWLASLIGLLYLIWNYGYRQGTTGSSVGKSVMKFKVVSEVTGQPIGFGMSVVRA 120
Query 203 LAHFIDAIICFVGFLFPLWDAKRQTLADKIMTTVCVPI 240
LAHF+DAIICF+GFLFPLWDAKRQTLADKIMTTVC+P+
Sbjct 121 LAHFVDAIICFIGFLFPLWDAKRQTLADKIMTTVCLPL 158
>gi|342861669|ref|ZP_08718315.1| Pra [Mycobacterium colombiense CECT 3035]
gi|342130803|gb|EGT84099.1| Pra [Mycobacterium colombiense CECT 3035]
Length=240
Score = 238 bits (606), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 163/240 (68%), Positives = 190/240 (80%), Gaps = 9/240 (3%)
Query 1 MTEQPPPGGSYPPPPPPPGPSGGHEPPPAAPPGGSGYAPPPPPSSGSGYPPPPPPPGGGA 60
MTEQPPPGG+YPPPP PGPSG + P GG P + + PPPPPP GG+
Sbjct 1 MTEQPPPGGAYPPPPSSPGPSGEPQQ----PSGGQ-----QVPQAPAASYPPPPPPPGGS 51
Query 61 YPPPPPSAGGYAPPPPGPAIRTMPTESYTPWITRVLAAFIDWAPYVVLVGIGWVIMLVTQ 120
YPPPPPSAGGYAPPPPGPAIRT+PTE YTPW+TR LA ID PYVV+ GIG I++ TQ
Sbjct 52 YPPPPPSAGGYAPPPPGPAIRTLPTEDYTPWLTRALAFVIDILPYVVVHGIGTAILVATQ 111
Query 121 TSSCVTSISEYDVGQFCVSQPSMIGQLVQWLLSVGGLAYLVWNYGYRQGTIGSSIGKSVL 180
++C+T +++Y V Q+C +Q S G + QWL S+ GL YL+WNYGYRQGT GSS+GKSVL
Sbjct 112 QTACITDVTQYAVNQYCATQNSTTGMVAQWLASIIGLFYLIWNYGYRQGTTGSSVGKSVL 171
Query 181 KFKVVSETTGQPIGFGMSVVRQLAHFIDAIICFVGFLFPLWDAKRQTLADKIMTTVCVPI 240
KFKVVSE TGQPIGFGMSVVR LAHF+DA+ICF+GFLFPLWD+KRQTLADKIMTTVC+PI
Sbjct 172 KFKVVSEVTGQPIGFGMSVVRSLAHFVDAVICFIGFLFPLWDSKRQTLADKIMTTVCLPI 231
>gi|15828288|ref|NP_302551.1| proline rich antigenic protein [Mycobacterium leprae TN]
gi|221230765|ref|YP_002504181.1| proline rich antigenic protein [Mycobacterium leprae Br4923]
gi|13432206|sp|P41484.2|PRA_MYCLE RecName: Full=Proline-rich antigen; AltName: Full=36 kDa antigen
gi|699272|gb|AAA63035.1| ag36 [Mycobacterium leprae]
gi|13093981|emb|CAC31911.1| proline rich antigenic protein [Mycobacterium leprae]
gi|219933872|emb|CAR72493.1| proline rich antigenic protein [Mycobacterium leprae Br4923]
Length=249
Score = 233 bits (594), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 107/161 (67%), Positives = 131/161 (82%), Gaps = 0/161 (0%)
Query 80 IRTMPTESYTPWITRVLAAFIDWAPYVVLVGIGWVIMLVTQTSSCVTSISEYDVGQFCVS 139
IR++P E+YT W+TRVLA ID P VL+GIG +I +T+ +CVT I++Y+V Q+C +
Sbjct 89 IRSLPKEAYTFWVTRVLAYVIDNIPATVLLGIGMLIQTLTKQEACVTDITQYNVNQYCAT 148
Query 140 QPSMIGQLVQWLLSVGGLAYLVWNYGYRQGTIGSSIGKSVLKFKVVSETTGQPIGFGMSV 199
QP+ IG L W + AYLVWNYGYRQG GSSIGK+V+KFKV+SE TGQPIGFGMSV
Sbjct 149 QPTGIGMLAFWFAWLMATAYLVWNYGYRQGATGSSIGKTVMKFKVISEATGQPIGFGMSV 208
Query 200 VRQLAHFIDAIICFVGFLFPLWDAKRQTLADKIMTTVCVPI 240
VRQLAHF+DA+IC +GFLFPLWD+KRQTLADKIMTTVC+PI
Sbjct 209 VRQLAHFVDAVICCIGFLFPLWDSKRQTLADKIMTTVCLPI 249
>gi|44415|emb|CAA46515.1| proline-rich antigen [Mycobacterium leprae]
Length=249
Score = 230 bits (586), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 105/161 (66%), Positives = 130/161 (81%), Gaps = 0/161 (0%)
Query 80 IRTMPTESYTPWITRVLAAFIDWAPYVVLVGIGWVIMLVTQTSSCVTSISEYDVGQFCVS 139
IR++P E+YT W+TRVLA ID P VL+GIG +I +T+ +CVT I++Y+V Q+C +
Sbjct 89 IRSLPKEAYTFWVTRVLAYVIDNIPATVLLGIGMLIQTLTKQEACVTDITQYNVNQYCAT 148
Query 140 QPSMIGQLVQWLLSVGGLAYLVWNYGYRQGTIGSSIGKSVLKFKVVSETTGQPIGFGMSV 199
QP+ IG L W + AYLVWNYGYRQG GSSIGK+V+KFKV+SE TGQPIGFGMSV
Sbjct 149 QPTGIGMLAFWFAWLMATAYLVWNYGYRQGATGSSIGKTVMKFKVISEATGQPIGFGMSV 208
Query 200 VRQLAHFIDAIICFVGFLFPLWDAKRQTLADKIMTTVCVPI 240
VR +AHF+DA+IC +GFLFPLWD+KRQTLADKIMTTVC+PI
Sbjct 209 VRHVAHFVDAVICCIGFLFPLWDSKRQTLADKIMTTVCLPI 249
>gi|336461454|gb|EGO40324.1| hypothetical protein MAPs_30340 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=239
Score = 229 bits (583), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 155/240 (65%), Positives = 187/240 (78%), Gaps = 9/240 (3%)
Query 1 MTEQPPPGGSYPPPPPPPGPSGGHEPPPAAPPGGSGYAPPPPPSSGSGYPPPPPPPGGGA 60
MT+QPPPGG+YPPPP PG GG +P P + P G PPPPP GG+
Sbjct 1 MTDQPPPGGAYPPPPSSPGSPGG-QPTP--------HPGGQQPPPPPGGSYPPPPPPGGS 51
Query 61 YPPPPPSAGGYAPPPPGPAIRTMPTESYTPWITRVLAAFIDWAPYVVLVGIGWVIMLVTQ 120
YPPPPP +GGYAPPPPGPAIRT+PT+ YTPW+TR LA ID PYVV+ GIG I++ TQ
Sbjct 52 YPPPPPPSGGYAPPPPGPAIRTLPTQDYTPWLTRALAFVIDILPYVVVHGIGTAILVATQ 111
Query 121 TSSCVTSISEYDVGQFCVSQPSMIGQLVQWLLSVGGLAYLVWNYGYRQGTIGSSIGKSVL 180
++C+T +++Y V Q+C +Q S +G + QWL S+ GL YL+WNYGYRQGT GSS+GKSV+
Sbjct 112 QTACITDVTQYAVNQYCATQNSTLGLVAQWLASIVGLFYLIWNYGYRQGTTGSSVGKSVM 171
Query 181 KFKVVSETTGQPIGFGMSVVRQLAHFIDAIICFVGFLFPLWDAKRQTLADKIMTTVCVPI 240
KFKVVSE TGQP+GFGMSVVR LAHF+DAIICF+GFLFPLWD+KRQTLADKIMTTVC+P+
Sbjct 172 KFKVVSEVTGQPVGFGMSVVRALAHFVDAIICFIGFLFPLWDSKRQTLADKIMTTVCLPL 231
>gi|41407123|ref|NP_959959.1| Pra [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41395474|gb|AAS03342.1| Pra [Mycobacterium avium subsp. paratuberculosis K-10]
Length=241
Score = 228 bits (581), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 155/240 (65%), Positives = 187/240 (78%), Gaps = 9/240 (3%)
Query 1 MTEQPPPGGSYPPPPPPPGPSGGHEPPPAAPPGGSGYAPPPPPSSGSGYPPPPPPPGGGA 60
MT+QPPPGG+YPPPP PG GG +P P + P G PPPPP GG+
Sbjct 3 MTDQPPPGGAYPPPPSSPGSPGG-QPTP--------HPGGQQPPPPPGGSYPPPPPPGGS 53
Query 61 YPPPPPSAGGYAPPPPGPAIRTMPTESYTPWITRVLAAFIDWAPYVVLVGIGWVIMLVTQ 120
YPPPPP +GGYAPPPPGPAIRT+PT+ YTPW+TR LA ID PYVV+ GIG I++ TQ
Sbjct 54 YPPPPPPSGGYAPPPPGPAIRTLPTQDYTPWLTRALAFVIDILPYVVVHGIGTAILVATQ 113
Query 121 TSSCVTSISEYDVGQFCVSQPSMIGQLVQWLLSVGGLAYLVWNYGYRQGTIGSSIGKSVL 180
++C+T +++Y V Q+C +Q S +G + QWL S+ GL YL+WNYGYRQGT GSS+GKSV+
Sbjct 114 QTACITDVTQYAVNQYCATQNSTLGLVAQWLASIVGLFYLIWNYGYRQGTTGSSVGKSVM 173
Query 181 KFKVVSETTGQPIGFGMSVVRQLAHFIDAIICFVGFLFPLWDAKRQTLADKIMTTVCVPI 240
KFKVVSE TGQP+GFGMSVVR LAHF+DAIICF+GFLFPLWD+KRQTLADKIMTTVC+P+
Sbjct 174 KFKVVSEVTGQPVGFGMSVVRALAHFVDAIICFIGFLFPLWDSKRQTLADKIMTTVCLPL 233
>gi|118463979|ref|YP_880448.1| Pra protein [Mycobacterium avium 104]
gi|118165266|gb|ABK66163.1| Pra protein [Mycobacterium avium 104]
Length=239
Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 154/240 (65%), Positives = 184/240 (77%), Gaps = 9/240 (3%)
Query 1 MTEQPPPGGSYPPPPPPPGPSGGHEPPPAAPPGGSGYAPPPPPSSGSGYPPPPPPPGGGA 60
MT+QPPPGG+YPPPP PG GG PP P G PPPPP GG+
Sbjct 1 MTDQPPPGGAYPPPPSSPGSPGGQPTPP---------PGGQQPPPPPGGSYPPPPPPGGS 51
Query 61 YPPPPPSAGGYAPPPPGPAIRTMPTESYTPWITRVLAAFIDWAPYVVLVGIGWVIMLVTQ 120
YPPPPP +GGYAPPPPGPAIRT+PT+ Y PW+TR LA ID PYVV+ GIG I++ TQ
Sbjct 52 YPPPPPPSGGYAPPPPGPAIRTLPTQDYAPWLTRALAFVIDILPYVVVHGIGTAILVATQ 111
Query 121 TSSCVTSISEYDVGQFCVSQPSMIGQLVQWLLSVGGLAYLVWNYGYRQGTIGSSIGKSVL 180
++C+T +++Y V Q+C +Q S +G + QWL S+ GL YL+WNYGYRQGT GSS+GKSV+
Sbjct 112 QTACITDVTQYAVNQYCATQNSTLGLVAQWLASIVGLFYLIWNYGYRQGTTGSSVGKSVM 171
Query 181 KFKVVSETTGQPIGFGMSVVRQLAHFIDAIICFVGFLFPLWDAKRQTLADKIMTTVCVPI 240
KFKVVSE TGQP+GFGMSVVR LAHF+DAIICF+GFLFPLWD+KRQTLADKIMTTVC+P+
Sbjct 172 KFKVVSEVTGQPVGFGMSVVRALAHFVDAIICFIGFLFPLWDSKRQTLADKIMTTVCLPL 231
>gi|240170289|ref|ZP_04748948.1| hypothetical protein MkanA1_13333 [Mycobacterium kansasii ATCC
12478]
Length=127
Score = 213 bits (541), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 100/127 (79%), Positives = 113/127 (89%), Gaps = 0/127 (0%)
Query 114 VIMLVTQTSSCVTSISEYDVGQFCVSQPSMIGQLVQWLLSVGGLAYLVWNYGYRQGTIGS 173
+I LVTQ SSCVTS+++YDV Q+C Q S+IG L Q L S+ LAY VWNYGYRQGT GS
Sbjct 1 MIALVTQQSSCVTSVNQYDVSQYCYVQDSIIGVLAQGLASLAILAYWVWNYGYRQGTTGS 60
Query 174 SIGKSVLKFKVVSETTGQPIGFGMSVVRQLAHFIDAIICFVGFLFPLWDAKRQTLADKIM 233
SIGKSVLKFKVVSETTGQP+GFGMS+VRQLAHF+DAIIC+VGFLFPLWDAKRQTLADKIM
Sbjct 61 SIGKSVLKFKVVSETTGQPLGFGMSLVRQLAHFVDAIICYVGFLFPLWDAKRQTLADKIM 120
Query 234 TTVCVPI 240
TTVC+P+
Sbjct 121 TTVCLPV 127
>gi|254774085|ref|ZP_05215601.1| Pra [Mycobacterium avium subsp. avium ATCC 25291]
Length=142
Score = 209 bits (533), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 91/131 (70%), Positives = 113/131 (87%), Gaps = 0/131 (0%)
Query 110 GIGWVIMLVTQTSSCVTSISEYDVGQFCVSQPSMIGQLVQWLLSVGGLAYLVWNYGYRQG 169
GIG I++ TQ ++C+T +++Y V Q+C +Q S +G + QWL S+ GL YL+WNYGYRQG
Sbjct 4 GIGTAILVATQQTACITDVTQYAVNQYCATQNSTLGLVAQWLASIVGLFYLIWNYGYRQG 63
Query 170 TIGSSIGKSVLKFKVVSETTGQPIGFGMSVVRQLAHFIDAIICFVGFLFPLWDAKRQTLA 229
T GSS+GKSV+KFKVVSE TGQP+GFGMSVVR LAHF+DAIICF+GFLFPLWD+KRQTLA
Sbjct 64 TTGSSVGKSVMKFKVVSEVTGQPVGFGMSVVRALAHFVDAIICFIGFLFPLWDSKRQTLA 123
Query 230 DKIMTTVCVPI 240
DKIMTTVC+P+
Sbjct 124 DKIMTTVCLPL 134
>gi|333989664|ref|YP_004522278.1| proline rich antigenic protein [Mycobacterium sp. JDM601]
gi|333485632|gb|AEF35024.1| proline rich antigenic protein [Mycobacterium sp. JDM601]
Length=239
Score = 191 bits (486), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 98/158 (63%), Positives = 116/158 (74%), Gaps = 4/158 (2%)
Query 83 MPTESYTPWITRVLAAFIDWAPYVVLVGIGWVIMLVTQTSSCVTSISEYDVGQFCVSQPS 142
+P ESYTPW+TRV A FID P +++ GI ++ T CVT+ G C PS
Sbjct 85 LPQESYTPWLTRVGAYFIDSIPILLIYGIPAMVAGSTAQRECVTT----SAGFACTVTPS 140
Query 143 MIGQLVQWLLSVGGLAYLVWNYGYRQGTIGSSIGKSVLKFKVVSETTGQPIGFGMSVVRQ 202
G L+ +L +G + +WNYGYRQGT GSSIGKSV+KFKVVSE TGQPIGFGMS+VRQ
Sbjct 141 TAGALLMFLGWLGAFGFGIWNYGYRQGTTGSSIGKSVMKFKVVSEATGQPIGFGMSIVRQ 200
Query 203 LAHFIDAIICFVGFLFPLWDAKRQTLADKIMTTVCVPI 240
LAH ID II F+G+LFPLWDAKRQTLADKIMTTVC+PI
Sbjct 201 LAHLIDGIILFIGYLFPLWDAKRQTLADKIMTTVCLPI 238
>gi|120405624|ref|YP_955453.1| RDD domain-containing protein [Mycobacterium vanbaalenii PYR-1]
gi|119958442|gb|ABM15447.1| RDD domain containing protein [Mycobacterium vanbaalenii PYR-1]
Length=168
Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 82/158 (52%), Positives = 102/158 (65%), Gaps = 5/158 (3%)
Query 83 MPTESYTPWITRVLAAFIDWAPYVVLVGIGWVIMLVTQTSSCVTSISEYDVGQF-CVSQP 141
MP YT W RV A F+D P + GI V+ L + T CVT +D G C S
Sbjct 12 MPRRVYTSWSARVAAFFVDMVPLGLAWGIWEVVALRSATLDCVT----FDNGGVSCSSGI 67
Query 142 SMIGQLVQWLLSVGGLAYLVWNYGYRQGTIGSSIGKSVLKFKVVSETTGQPIGFGMSVVR 201
S +G L L +AYLVWNYG+RQG GSS+GKSVL+F+V+ E T +P+GFG SV+R
Sbjct 68 SSVGYLAFALTVAVSVAYLVWNYGHRQGVSGSSVGKSVLRFQVLDEKTWRPVGFGASVLR 127
Query 202 QLAHFIDAIICFVGFLFPLWDAKRQTLADKIMTTVCVP 239
Q H +DA +CF+GFL PLWD +RQTLADK+ TVCVP
Sbjct 128 QAVHLLDAAVCFIGFLCPLWDRRRQTLADKLTGTVCVP 165
>gi|118470060|ref|YP_889513.1| RDD family protein [Mycobacterium smegmatis str. MC2 155]
gi|118171347|gb|ABK72243.1| RDD family protein [Mycobacterium smegmatis str. MC2 155]
Length=245
Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 82/180 (46%), Positives = 104/180 (58%), Gaps = 55/180 (30%)
Query 86 ESYTPWITRVLAAFIDWAPYVVLVGIGWVIM-------------------------LVTQ 120
++YTPW RV+A ID P V+ IG++++ ++
Sbjct 54 QAYTPWFDRVIAFVIDQLPIAVVTVIGYLVVFGILAGASQGSSDGEITTGVGIVAAVLI- 112
Query 121 TSSCVTSISEYDVGQFCVSQPSMIGQLVQWLLSVGGLAYLVWNYGYRQGTIGSSIGKSVL 180
++LS+ +AY VWN GYRQGT G SIGKSV+
Sbjct 113 -----------------------------FVLSLAPIAYGVWNMGYRQGTTGQSIGKSVM 143
Query 181 KFKVVSETTGQPIGFGMSVVRQLAHFIDAIICFVGFLFPLWDAKRQTLADKIMTTVCVPI 240
KFKVVSE TGQPIGF MS+VRQ+AH +D +IC+VG+LFPLWDAKRQTLADKIMTTVCVP+
Sbjct 144 KFKVVSEQTGQPIGFLMSLVRQVAHIVDGLICYVGYLFPLWDAKRQTLADKIMTTVCVPV 203
>gi|315443098|ref|YP_004075977.1| hypothetical protein Mspyr1_14690 [Mycobacterium sp. Spyr1]
gi|315261401|gb|ADT98142.1| uncharacterized conserved protein [Mycobacterium sp. Spyr1]
Length=184
Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 74/165 (45%), Positives = 101/165 (62%), Gaps = 5/165 (3%)
Query 77 GPAIRTMPTESYTPWITRVLAAFIDWAPYVVLVGIGWVIMLVTQTSSCVTSISEYDVGQF 136
G +RT +T W RV A +D P ++ GI + + ++ CVT YD G
Sbjct 15 GTFVRTAARNPHTSWTRRVAAGILDAVPVMLGWGIWESVAIGAASTECVT----YDNGGV 70
Query 137 -CVSQPSMIGQLVQWLLSVGGLAYLVWNYGYRQGTIGSSIGKSVLKFKVVSETTGQPIGF 195
C + S G +V L+ +AYL WN+G RQG G+SIGKSV+ F++V E T Q +GF
Sbjct 71 ACTAIGSPAGDVVGVLMVFLSVAYLCWNFGLRQGRRGASIGKSVMGFRMVDEKTWQAVGF 130
Query 196 GMSVVRQLAHFIDAIICFVGFLFPLWDAKRQTLADKIMTTVCVPI 240
G S++R L H +DA+ +GFLFPLWD +RQTLADK+M TVCVP+
Sbjct 131 GRSMLRLLVHVVDAVPLGIGFLFPLWDRRRQTLADKLMGTVCVPV 175
>gi|145222633|ref|YP_001133311.1| RDD domain-containing protein [Mycobacterium gilvum PYR-GCK]
gi|145215119|gb|ABP44523.1| RDD domain containing protein [Mycobacterium gilvum PYR-GCK]
Length=167
Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 73/162 (46%), Positives = 100/162 (62%), Gaps = 5/162 (3%)
Query 80 IRTMPTESYTPWITRVLAAFIDWAPYVVLVGIGWVIMLVTQTSSCVTSISEYDVGQF-CV 138
+RT +T W RV A +D P ++ GI + + ++ CVT YD G C
Sbjct 1 MRTAARNPHTSWTRRVAAGILDAVPVMLGWGIWESVAIGAASTECVT----YDNGGVACT 56
Query 139 SQPSMIGQLVQWLLSVGGLAYLVWNYGYRQGTIGSSIGKSVLKFKVVSETTGQPIGFGMS 198
+ S G +V L+ +AYL WN+G RQG G+SIGKSV+ F++V E T Q +GFG S
Sbjct 57 AIGSPAGDVVGVLMVFLSVAYLCWNFGLRQGRRGASIGKSVMGFRMVDEKTWQAVGFGRS 116
Query 199 VVRQLAHFIDAIICFVGFLFPLWDAKRQTLADKIMTTVCVPI 240
++R L H +DA+ +GFLFPLWD +RQTLADK+M TVCVP+
Sbjct 117 MLRLLVHVVDAVPLGIGFLFPLWDRRRQTLADKLMGTVCVPV 158
>gi|240170812|ref|ZP_04749471.1| hypothetical protein MkanA1_15972 [Mycobacterium kansasii ATCC
12478]
Length=296
Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/152 (45%), Positives = 91/152 (60%), Gaps = 15/152 (9%)
Query 87 SYTPWITRVLAAFIDWAPYVVLVGIGWVIMLVTQTSSCVTSISEYDVGQFCVSQPSMIGQ 146
+Y WI RV A ID+ +G+VI + VT+ V S
Sbjct 3 AYASWIRRVGAYLIDYM-------LGFVIGVTLGIVGGVTAT--------LVGGGSRFQG 47
Query 147 LVQWLLSVGGLAYLVWNYGYRQGTIGSSIGKSVLKFKVVSETTGQPIGFGMSVVRQLAHF 206
+V ++++ LAY VWN+GYRQG GS++GKSVL+FKV+ E TG PIG G S+ R AHF
Sbjct 48 IVALIVNLALLAYWVWNWGYRQGITGSTVGKSVLRFKVLGERTGAPIGVGSSIARYFAHF 107
Query 207 IDAIICFVGFLFPLWDAKRQTLADKIMTTVCV 238
+DAI +G+L PL+ AKRQT+AD +M TVCV
Sbjct 108 LDAITFGIGYLLPLFTAKRQTIADMVMDTVCV 139
>gi|32351079|gb|AAP76186.1| proline-rich antigen [Mycobacterium leprae]
Length=164
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 54/100 (54%), Positives = 71/100 (71%), Gaps = 0/100 (0%)
Query 80 IRTMPTESYTPWITRVLAAFIDWAPYVVLVGIGWVIMLVTQTSSCVTSISEYDVGQFCVS 139
IR++P E+Y W+TRVLA ID P VL+GIG +I +T+ +CVT I++Y+V Q+C +
Sbjct 65 IRSLPKEAYAFWVTRVLAYVIDNIPATVLLGIGMLIQTLTKQEACVTDITQYNVNQYCAT 124
Query 140 QPSMIGQLVQWLLSVGGLAYLVWNYGYRQGTIGSSIGKSV 179
QP+ IG L W + AYLVWNYGYRQG GSSIGK+V
Sbjct 125 QPTGIGMLAFWFAWLMATAYLVWNYGYRQGATGSSIGKTV 164
>gi|32351081|gb|AAP76187.1| proline-rich antigen [Mycobacterium leprae]
Length=164
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 54/100 (54%), Positives = 72/100 (72%), Gaps = 0/100 (0%)
Query 80 IRTMPTESYTPWITRVLAAFIDWAPYVVLVGIGWVIMLVTQTSSCVTSISEYDVGQFCVS 139
IR++P E+YT W+TRVLA ID P VL+GIG +I +T+ +CVT I++Y+V Q+C +
Sbjct 65 IRSLPKEAYTFWVTRVLAYVIDNIPATVLLGIGMLIQTLTKQEACVTDITQYNVNQYCAT 124
Query 140 QPSMIGQLVQWLLSVGGLAYLVWNYGYRQGTIGSSIGKSV 179
QP+ IG L + +AYLVWNYGYRQG GSSIGK+V
Sbjct 125 QPTGIGMLAFRFAWLMAMAYLVWNYGYRQGATGSSIGKTV 164
>gi|317507687|ref|ZP_07965394.1| RDD family protein [Segniliparus rugosus ATCC BAA-974]
gi|316254014|gb|EFV13377.1| RDD family protein [Segniliparus rugosus ATCC BAA-974]
Length=165
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/162 (40%), Positives = 89/162 (55%), Gaps = 19/162 (11%)
Query 81 RTMPTESYTPWITRVLAAFID---WAPYVVLVGIGWVIMLVTQTSSCVTSISEYDVGQFC 137
R + Y W +RVLA+ ID P+ VL+G+ + E++
Sbjct 19 RESQRKGYATWGSRVLASVIDSLLLLPFQVLIGV----------------VGEHESSSSP 62
Query 138 VSQPSMIGQLVQWLLSVGGLAYLVWNYGYRQGTIGSSIGKSVLKFKVVSETTGQPIGFGM 197
S + LL +G L VWN +QG G ++GK LK ++V E+TG+PIG G+
Sbjct 63 YSGTPDGAAVASMLLVLGALGVCVWNVIVKQGRTGQTVGKEALKIRLVQESTGRPIGPGV 122
Query 198 SVVRQLAHFIDAIICFVGFLFPLWDAKRQTLADKIMTTVCVP 239
VRQLAH +D + C+VG+L+PLWDAKRQT ADK+M TV V
Sbjct 123 VFVRQLAHILDVVSCYVGYLWPLWDAKRQTFADKVMRTVVVK 164
>gi|169628289|ref|YP_001701938.1| proline-rich antigen [Mycobacterium abscessus ATCC 19977]
gi|169240256|emb|CAM61284.1| Proline-rich antigen (36 kDa antigen) [Mycobacterium abscessus]
Length=190
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/93 (60%), Positives = 70/93 (76%), Gaps = 8/93 (8%)
Query 151 LLSVGGLAYLVWNYGYRQGTIGSSI----GKSVLKFKVVSETTGQPIGFGMSVVRQLAHF 206
L S+ LA+ VWN+G +QGT GSSI L +V+ E TGQPIGFGMSVVRQ+AHF
Sbjct 101 LFSLAALAFAVWNWGLKQGTTGSSIGKGL----LGIRVLGEATGQPIGFGMSVVRQIAHF 156
Query 207 IDAIICFVGFLFPLWDAKRQTLADKIMTTVCVP 239
+DA+IC++GFL PL+ AKRQT+AD ++ TV VP
Sbjct 157 LDAVICYIGFLLPLFTAKRQTIADMLVKTVVVP 189
>gi|312195036|ref|YP_004015097.1| hypothetical protein FraEuI1c_1155 [Frankia sp. EuI1c]
gi|311226372|gb|ADP79227.1| RDD domain containing protein [Frankia sp. EuI1c]
Length=205
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/181 (40%), Positives = 97/181 (54%), Gaps = 38/181 (20%)
Query 61 YPPPPPSAGGYAP-PPPGPAIRTMPTESYTPWITRVLAAFIDWAP-YVVLVGIGWVIMLV 118
YP P P GY P P GP +Y W RV A ID P VVLV G ++
Sbjct 60 YPQPVP---GYGPGQPAGPG-------AYASWAQRVGAYLIDVLPQIVVLVLFGSIL--- 106
Query 119 TQTSSCVTSISEYDVGQFCVSQPSMIGQLVQWLLSVGGLAYLVWNYGYRQGTIGSSIGKS 178
P+++ ++ WL S+G ++V+N + G G S+G+
Sbjct 107 --------------------RGPAVVLLVILWLASLG---WIVYNRWIQAGRTGQSLGRK 143
Query 179 VLKFKVVSETTGQPIGFGMSVVRQLAHFIDAIICFVGFLFPLWDAKRQTLADKIMTTVCV 238
L ++VSE TGQPIG M+ R L HF+D++IC++G+LFPLWD KRQTLADKI+ TV V
Sbjct 144 TLNIRLVSEVTGQPIGPAMAFARDLCHFVDSVICYIGYLFPLWDPKRQTLADKIVKTVVV 203
Query 239 P 239
P
Sbjct 204 P 204
>gi|300788454|ref|YP_003768745.1| RDD domain-containing protein [Amycolatopsis mediterranei U32]
gi|299797968|gb|ADJ48343.1| RDD domain-containing protein [Amycolatopsis mediterranei U32]
gi|340530058|gb|AEK45263.1| RDD domain-containing protein [Amycolatopsis mediterranei S699]
Length=366
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 57/161 (36%), Positives = 85/161 (53%), Gaps = 32/161 (19%)
Query 84 PTESYTPWITRVLAAFIDWAPYVVLVGIGWVIMLVTQTSSCVTSISEYDVGQFCVSQPSM 143
P +Y W R L ID++P +V+ + + + + +
Sbjct 74 PPRNYASWGQRALGWLIDFSPILVIYIVAGLFSAIVGKAGPI------------------ 115
Query 144 IGQLVQWLLSVGGLAYLVW------NYGYRQGTIGSSIGKSVLKFKVVSETTGQPIGFGM 197
L++GGL +L W N +QG G S+GK + K K+V E TGQP+G GM
Sbjct 116 --------LAIGGLGWLAWIAWSIYNRWIQQGNTGQSLGKRIAKIKLVREDTGQPVGPGM 167
Query 198 SVVRQLAHFIDAIICFVGFLFPLWDAKRQTLADKIMTTVCV 238
+ +R LAH +D++IC+VG+L+PLWD K QTLADKI+ TV +
Sbjct 168 AFLRDLAHAVDSVICYVGWLWPLWDDKSQTLADKIVGTVVI 208
>gi|119718777|ref|YP_925742.1| RDD domain-containing protein [Nocardioides sp. JS614]
gi|119539438|gb|ABL84055.1| RDD domain containing protein [Nocardioides sp. JS614]
Length=272
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/164 (40%), Positives = 92/164 (57%), Gaps = 13/164 (7%)
Query 84 PTESYTPWITRVLAAFIDWAPYVVLVGI---GWV---IMLVTQTSSCVTSIS--EYDVGQ 135
P Y W R +D + + +LV I G + I + TQ T + + G+
Sbjct 109 PVYDYAHWGKRAGGYLLD-SLFTMLVAIPAYGLLFGGIAVGTQDMETYTDAAGVSHTTGE 167
Query 136 F-CVSQPSMIGQLVQWLLSVGGLAYLVWNYGYRQGTIGSSIGKSVLKFKVVSETTGQPIG 194
+ P +I V +LL LA+ +WN RQG G S+GK ++ ++V E+ GQPIG
Sbjct 168 WDNAGTPLVILGAVLFLLP---LAFFIWNTCLRQGRTGYSLGKGIVGIRLVGESDGQPIG 224
Query 195 FGMSVVRQLAHFIDAIICFVGFLFPLWDAKRQTLADKIMTTVCV 238
GMS VR L H +D++ C++G+L+PLWDAKRQT ADKI+ TV V
Sbjct 225 GGMSFVRYLLHMLDSLACYLGWLWPLWDAKRQTFADKILRTVVV 268
>gi|256374850|ref|YP_003098510.1| hypothetical protein Amir_0701 [Actinosynnema mirum DSM 43827]
gi|255919153|gb|ACU34664.1| RDD domain containing protein [Actinosynnema mirum DSM 43827]
Length=373
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 63/172 (37%), Positives = 92/172 (54%), Gaps = 26/172 (15%)
Query 69 GGYAPPPPGPAIRTMPTESYTPWITRVLAAFIDWAPYVVLVGIGWVIMLVTQTSSCVTSI 128
GGY P P P Y W +RV+A ID G V+++V + + S+
Sbjct 148 GGYGQPAP-------PAGGYAEWGSRVIAGLIDQ---------GVVVVVVIVAAILMGSV 191
Query 129 SEYDVGQFCVSQPSMIGQLVQWLLSVGGLAYLVWNYGYRQGTIGSSIGKSVLKFKVVSET 188
D+G M+G + +L + + + +N Y GT G S GK + K K++SE
Sbjct 192 GPSDIG-------LMMG--IAGVLYLAAIGWGFYNL-YLMGTTGQSFGKKIAKIKLISEE 241
Query 189 TGQPIGFGMSVVRQLAHFIDAIICFVGFLFPLWDAKRQTLADKIMTTVCVPI 240
TGQ IGFG + VR L HF+D I C +G+L PLW++K+QT ADKI+ T+ V +
Sbjct 242 TGQVIGFGGAFVRGLCHFVDNIACGIGYLAPLWESKKQTWADKIVKTIVVNV 293
>gi|182436508|ref|YP_001824227.1| hypothetical protein SGR_2715 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326777130|ref|ZP_08236395.1| RDD domain containing protein [Streptomyces cf. griseus XylebKG-1]
gi|178465024|dbj|BAG19544.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC
13350]
gi|326657463|gb|EGE42309.1| RDD domain containing protein [Streptomyces griseus XylebKG-1]
Length=208
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/206 (34%), Positives = 101/206 (50%), Gaps = 37/206 (17%)
Query 38 APPPPPSSGSGYPPPPPPPGGGAYPPPPPSAGGYAPPPPGPAIRTMPTESYTPWITRVLA 97
AP P G GYP P GAYP P MP ++ W R
Sbjct 34 APQGVPPQGYGYPQQQPGQPYGAYPQQPGHG-----GQQPGYGGGMPQLAH--WGLRAGG 86
Query 98 AFIDW----APYVVLVGIGWVIMLVTQTSSCVTSISEYDVGQFCVSQPSMIGQLVQWLLS 153
ID PY++L GIG + + + ++ + ++IG LV W L
Sbjct 87 LIIDGLVVGVPYLILGGIGGAM---GDSGGAIIALLGF---------VALIG-LVIWQL- 132
Query 154 VGGLAYLVWNYGYRQGTIGSSIGKSVLKFKVVSETTGQPIGFGMSVVRQLAHFIDAIICF 213
Y++GT G +IGK + +++ E G+P+GFGM+ VR+LAHF+D+I C+
Sbjct 133 ------------YQEGTTGQTIGKKAVGIRLLREADGRPLGFGMAFVRRLAHFLDSIACY 180
Query 214 VGFLFPLWDAKRQTLADKIMTTVCVP 239
+G+L+PLWD K+QT ADK+ ++V V
Sbjct 181 IGWLWPLWDEKKQTFADKVCSSVVVK 206
>gi|291447177|ref|ZP_06586567.1| RDD domain containing protein [Streptomyces roseosporus NRRL
15998]
gi|291350124|gb|EFE77028.1| RDD domain containing protein [Streptomyces roseosporus NRRL
15998]
Length=235
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 39/86 (46%), Positives = 64/86 (75%), Gaps = 1/86 (1%)
Query 154 VGGLAYLVWNYGYRQGTIGSSIGKSVLKFKVVSETTGQPIGFGMSVVRQLAHFIDAIICF 213
+G +A +W Y++GT G +IGK + +++ E G+P+GFGM+ VR+LAHF+D++ C+
Sbjct 149 LGLIAVAIWQL-YQEGTTGQTIGKKAVGIRLLREADGRPLGFGMAFVRRLAHFLDSLACY 207
Query 214 VGFLFPLWDAKRQTLADKIMTTVCVP 239
+G+L+PLWD K+QT ADK+ ++V V
Sbjct 208 IGWLWPLWDEKKQTFADKVCSSVVVK 233
>gi|239990166|ref|ZP_04710830.1| hypothetical protein SrosN1_22868 [Streptomyces roseosporus NRRL
11379]
Length=207
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 39/86 (46%), Positives = 64/86 (75%), Gaps = 1/86 (1%)
Query 154 VGGLAYLVWNYGYRQGTIGSSIGKSVLKFKVVSETTGQPIGFGMSVVRQLAHFIDAIICF 213
+G +A +W Y++GT G +IGK + +++ E G+P+GFGM+ VR+LAHF+D++ C+
Sbjct 121 LGLIAVAIWQL-YQEGTTGQTIGKKAVGIRLLREADGRPLGFGMAFVRRLAHFLDSLACY 179
Query 214 VGFLFPLWDAKRQTLADKIMTTVCVP 239
+G+L+PLWD K+QT ADK+ ++V V
Sbjct 180 IGWLWPLWDEKKQTFADKVCSSVVVK 205
>gi|297201861|ref|ZP_06919258.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
gi|197712771|gb|EDY56805.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
Length=224
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 34/71 (48%), Positives = 55/71 (78%), Gaps = 0/71 (0%)
Query 168 QGTIGSSIGKSVLKFKVVSETTGQPIGFGMSVVRQLAHFIDAIICFVGFLFPLWDAKRQT 227
+G G ++GK L ++V E+ GQP+G GM+ VR+LAHF+D++ C++G+L+P WDAKRQT
Sbjct 151 EGKNGQTLGKKALGIRLVRESDGQPLGVGMAFVRRLAHFLDSLACYLGWLWPAWDAKRQT 210
Query 228 LADKIMTTVCV 238
ADK+ +++ +
Sbjct 211 FADKVCSSIVI 221
>gi|284028931|ref|YP_003378862.1| RDD domain containing protein [Kribbella flavida DSM 17836]
gi|283808224|gb|ADB30063.1| RDD domain containing protein [Kribbella flavida DSM 17836]
Length=241
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/193 (30%), Positives = 89/193 (47%), Gaps = 23/193 (11%)
Query 49 YPPPPPPPGGGAYPPPPPSAGG-YAPPPPGPAIRTMPTESYTPWITRVLAAFIDWAPYVV 107
Y P PGG +YP P S Y P P W RV A ID
Sbjct 71 YGQAPGQPGGSSYPSYPQSGATPYGQQPYAGYGYGNPGGELATWPVRVGAFLID------ 124
Query 108 LVGIGWVIMLVTQTSSCVTSISEYDVGQFCVSQPSMIGQLVQWLLSVGGLAYLVWNYGYR 167
G ++ + S +T+ + ++V +LL + L ++N +
Sbjct 125 ----GLIVAVPNWIGSTLTATDNSGL------------RIVGYLLILVALGLWIYNRIIQ 168
Query 168 QGTIGSSIGKSVLKFKVVSETTGQPIGFGMSVVRQLAHFIDAIICFVGFLFPLWDAKRQT 227
QG G S GK L K+V +GQ +G G + +R++ H +D++ C++G+L+PLWD K+QT
Sbjct 169 QGKTGQSWGKKALGLKLVGADSGQTVGAGKAFLREICHILDSLPCYLGYLWPLWDEKKQT 228
Query 228 LADKIMTTVCVPI 240
+DKI +T V +
Sbjct 229 FSDKINSTYVVKL 241
>gi|302528831|ref|ZP_07281173.1| predicted protein [Streptomyces sp. AA4]
gi|302437726|gb|EFL09542.1| predicted protein [Streptomyces sp. AA4]
Length=328
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/99 (44%), Positives = 64/99 (65%), Gaps = 1/99 (1%)
Query 138 VSQPSMIGQLVQWLLSV-GGLAYLVWNYGYRQGTIGSSIGKSVLKFKVVSETTGQPIGFG 196
VS S + + +LL++ G LA+ V+N G G S+GK ++ K+VSE G+PIG G
Sbjct 61 VSMVSGVASTIVYLLAILGTLAWTVFNRWINGGNTGQSLGKRIVGIKLVSEAAGEPIGAG 120
Query 197 MSVVRQLAHFIDAIICFVGFLFPLWDAKRQTLADKIMTT 235
+ VR LAH +D++ +G+L+PLWD K QT +DKI+ T
Sbjct 121 TAFVRDLAHALDSMAFALGYLWPLWDDKAQTFSDKILGT 159
>gi|326329430|ref|ZP_08195754.1| proline-rich antigen [Nocardioidaceae bacterium Broad-1]
gi|325952756|gb|EGD44772.1| proline-rich antigen [Nocardioidaceae bacterium Broad-1]
Length=186
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/163 (35%), Positives = 85/163 (53%), Gaps = 29/163 (17%)
Query 86 ESYTP-------WITRVLAAFIDWA---PYVVLVGIGWVIMLVTQTSSCVTSISEYDVGQ 135
+SY P W +RV A ID A P+ ++ G+G + +Q S
Sbjct 38 QSYVPAGPPLATWGSRVAGALIDVALLLPFYLVAGVGGGL---SQESG------------ 82
Query 136 FCVSQPSMIGQLVQWLLSVGGLAYLVWNYGYRQGTIGSSIGKSVLKFKVVSETTGQPIGF 195
F V+ ++ + W +GGLA+ VWN+ +QG G +IGK V+ K+V + G
Sbjct 83 FFVTAFGLLVTMAGW---IGGLAFAVWNHVLKQGRTGYTIGKGVVGIKLVRRDSQATTGV 139
Query 196 GMSVVRQLAHFIDAIICFVGFLFPLWDAKRQTLADKIMTTVCV 238
+++ RQ H +D C +G+L+PLWD KRQT ADKI+ T+ V
Sbjct 140 PVALARQFLHVLDG-FCMIGYLWPLWDDKRQTFADKIVGTLVV 181
>gi|309812586|ref|ZP_07706331.1| RDD family protein [Dermacoccus sp. Ellin185]
gi|308433437|gb|EFP57324.1| RDD family protein [Dermacoccus sp. Ellin185]
Length=233
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/177 (34%), Positives = 86/177 (49%), Gaps = 15/177 (8%)
Query 71 YAPPPPGPAIRTMPTESYTPWITRVLAAFID----WAPYVVLVGIGWVIMLVTQTSSCVT 126
Y G R + + Y W +RV A ID P +V+ G+G + L + S V
Sbjct 60 YQGQQYGAPARRVGSAPYGSWGSRVGAYLIDSLLSAVPMIVISGLG--LWLAFKDSYSVE 117
Query 127 SISEYDVGQFCVSQPSMIGQLVQWLLSVGGLAYLVWNYGYRQGTIGSSIGKSVLKFKVVS 186
I+ G + S G + L + L + +WN RQG G S+GK +L KVV
Sbjct 118 DIN----GNSTLHNVSGGGVALALLGPLVALLFNLWNRAIRQGRTGQSLGKKMLHLKVVD 173
Query 187 ETTGQP----IGFGMSVVRQLAHFID-AIICFVGFLFPLWDAKRQTLADKIMTTVCV 238
E TGQP +GFG ++ +A I ++ V L+PLWD +QTL DKI+ T+ V
Sbjct 174 ERTGQPTGAGVGFGRYLLEAVAGGISGGLLLIVDLLWPLWDDTKQTLHDKIVHTIVV 230
>gi|269129002|ref|YP_003302372.1| RDD domain containing protein [Thermomonospora curvata DSM 43183]
gi|268313960|gb|ACZ00335.1| RDD domain containing protein [Thermomonospora curvata DSM 43183]
Length=198
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/162 (36%), Positives = 86/162 (54%), Gaps = 17/162 (10%)
Query 84 PTESYTPWITRVLAAFIDW----APYVVLVGIGWVIMLVTQTSSCVTSISEYDVGQFCVS 139
P+ Y W RV A+ +D P + L +G V+M V E + G +
Sbjct 49 PSRPYAEWGARVAASLLDGLVIGGPALFLSLLGVVLMAV----GFAGGPGEENAGLVGLG 104
Query 140 QPSMIGQLVQWL-LSVGGLAYLVWNYGYRQGTIGSSIGKSVLKFKVVSETTGQPIGFGMS 198
I LV L ++V GL W+ + +GT G + GK + +V+E +GQPIGFG +
Sbjct 105 ---FILLLVACLAVAVAGL----WSV-HLEGTTGQTFGKRRMNIMLVAEHSGQPIGFGAA 156
Query 199 VVRQLAHFIDAIICFVGFLFPLWDAKRQTLADKIMTTVCVPI 240
VR++AH +D +GFL+PL+D K+QT ADK+M TV V +
Sbjct 157 FVRRMAHGLDGFAFCLGFLWPLFDPKKQTFADKVMGTVVVQL 198
>gi|226304004|ref|YP_002763962.1| hypothetical protein RER_05150 [Rhodococcus erythropolis PR4]
gi|226183119|dbj|BAH31223.1| hypothetical membrane protein [Rhodococcus erythropolis PR4]
Length=188
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/189 (33%), Positives = 89/189 (48%), Gaps = 22/189 (11%)
Query 46 GSGYPPPPPPPGGGAYPPPPPSAGGYAPPPPGPAIRTMPTESYTPWITRVLAAFIDW--- 102
G G P PP G PP PP GY PP P + WI+RV A+ +D
Sbjct 7 GPGQPSQNPPYG--QMPPMPPQ--GYQPPTP--------AYPFASWISRVFASILDGFVV 54
Query 103 -APYVVLVGIGWVIMLVTQTSSCVTSISEYDVGQFCVSQPSMIGQLVQWLLSVGGLAYLV 161
P V+L GIG VI + ++ YD G + +G +V + + V
Sbjct 55 PLPGVILAGIGAVIAFSG------SEVTTYDDGSVSAEGGNPVGVIVMVVGILAIFLIEV 108
Query 162 WNYGYRQGTIGSSIGKSVLKFKVVSETTGQPIGFGMSVVRQLAHFIDAIICFVGFLFPLW 221
WN +RQG G ++GK L V+ E+ G P+G M+++R + I CF+ +L+PLW
Sbjct 109 WNLVFRQGNTGQTLGKKWLGISVIRESDGVPLGPVMALLRWIMMAILGGACFLNYLWPLW 168
Query 222 DAKRQTLAD 230
D+K Q D
Sbjct 169 DSKHQCWHD 177
>gi|284028930|ref|YP_003378861.1| RDD domain containing protein [Kribbella flavida DSM 17836]
gi|283808223|gb|ADB30062.1| RDD domain containing protein [Kribbella flavida DSM 17836]
Length=219
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/84 (41%), Positives = 48/84 (58%), Gaps = 0/84 (0%)
Query 157 LAYLVWNYGYRQGTIGSSIGKSVLKFKVVSETTGQPIGFGMSVVRQLAHFIDAIICFVGF 216
A +WN RQG G S+GK V+ KVVS TG+ IG G ++ R++ I CF+
Sbjct 136 FAVQIWNRVIRQGRTGQSLGKKVVGLKVVSPETGELIGMGRTLGREVCAVIFNNFCFLNV 195
Query 217 LFPLWDAKRQTLADKIMTTVCVPI 240
L+PLWD K QT DK+ + + +
Sbjct 196 LWPLWDDKSQTWHDKVAGDIVIKV 219
>gi|229494804|ref|ZP_04388560.1| RDD domain containing protein [Rhodococcus erythropolis SK121]
gi|229318300|gb|EEN84165.1| RDD domain containing protein [Rhodococcus erythropolis SK121]
Length=189
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/189 (33%), Positives = 88/189 (47%), Gaps = 21/189 (11%)
Query 46 GSGYPPPPPPPGGGAYPPPPPSAGGYAPPPPGPAIRTMPTESYTPWITRVLAAFIDW--- 102
G G P PP G PP PP GY PP P Y WI+RV A+ +D
Sbjct 7 GPGQPSQNQPPYG-QMPPMPPQ--GYRPPTP--------AYPYASWISRVFASILDGFVV 55
Query 103 -APYVVLVGIGWVIMLVTQTSSCVTSISEYDVGQFCVSQPSMIGQLVQWLLSVGGLAYLV 161
P V+L IG VI + ++ YD G + +G +V + + V
Sbjct 56 PLPGVILAIIGAVIAFSG------SEVTTYDDGSVSAEGGNPVGVIVMVVGILAIFLIEV 109
Query 162 WNYGYRQGTIGSSIGKSVLKFKVVSETTGQPIGFGMSVVRQLAHFIDAIICFVGFLFPLW 221
WN +RQG G ++GK L V+ E+ G P+G M+++R + I CF+ +L+PLW
Sbjct 110 WNLVFRQGNTGQTLGKKWLGISVIRESDGVPLGPVMALLRWIMMAILGGACFLNYLWPLW 169
Query 222 DAKRQTLAD 230
D+K Q D
Sbjct 170 DSKHQCWHD 178
>gi|344265080|ref|XP_003404615.1| PREDICTED: protein diaphanous homolog 1 [Loxodonta africana]
Length=1275
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 35/107 (33%), Positives = 39/107 (37%), Gaps = 33/107 (30%)
Query 5 PPPGGSYPPPPPP-PGPSG---GHEPPP----------------------------AAPP 32
P P + PP PP PG SG PPP +P
Sbjct 566 PVPSSASIPPAPPLPGDSGTVITSSPPPLTGEVSIPLPPPPPPPCPPLPGDAWISLPSPL 625
Query 33 GGSGYAPPPPPSSGSGYPPPPP-PPGGGAYPPPPPSAGGYAPPPPGP 78
GS +P PPP GS PPPP PG + P PP G PP P
Sbjct 626 PGSATSPHPPPLPGSASVPPPPLLPGSASVPSTPPLPGSARVTPPSP 672
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 21/56 (38%), Positives = 24/56 (43%), Gaps = 2/56 (3%)
Query 14 PPPPPGPSGGHEPPPAAPPGGSGYAPPPPPSSGSGYPPPPPPPGGGAYPPPPPSAG 69
P P PG + PPP PG + PPP + P PP PG PP P G
Sbjct 622 PSPLPGSATSPHPPPL--PGSASVPPPPLLPGSASVPSTPPLPGSARVTPPSPLPG 675
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 29/103 (29%), Positives = 35/103 (34%), Gaps = 24/103 (23%)
Query 17 PPGPSGGHEPPPAAPPGGSG--YAPPPPPSSGS----------------------GYPPP 52
PP PS PP PG SG PPP +G P P
Sbjct 565 PPVPSSASIPPAPPLPGDSGTVITSSPPPLTGEVSIPLPPPPPPPCPPLPGDAWISLPSP 624
Query 53 PPPPGGGAYPPPPPSAGGYAPPPPGPAIRTMPTESYTPWITRV 95
P +PPP P + PPP P ++P+ P RV
Sbjct 625 LPGSATSPHPPPLPGSASVPPPPLLPGSASVPSTPPLPGSARV 667
Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query 2 TEQPPP---GGSYPPPPPPPGPSGGHEPPPAAPPGGSGYAPPPP-PSSGS 47
+ PPP S PPPP PG + PP PG + PP P P S S
Sbjct 631 SPHPPPLPGSASVPPPPLLPGSASVPSTPPL--PGSARVTPPSPLPGSAS 678
>gi|189233571|ref|XP_967872.2| PREDICTED: similar to AGAP001894-PA [Tribolium castaneum]
gi|270014628|gb|EFA11076.1| hypothetical protein TcasGA2_TC004672 [Tribolium castaneum]
Length=514
Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/87 (52%), Positives = 48/87 (56%), Gaps = 21/87 (24%)
Query 5 PPPGGSYPPPPPPPGPSGGHEPPPAA----PPGGSGYAPPP----PPSSGSGYPPPP--- 53
PP GG+YPP PSGG PPP+ PP G Y PP PP SG YPPP
Sbjct 325 PPSGGAYPP------PSGGTYPPPSGGTYPPPSGGTYPPPSGGAYPPPSGGTYPPPSGGT 378
Query 54 -PPPGGGAYPPPPPSAGGYAPPPPGPA 79
PPP GGAYPPP +GG PPP G A
Sbjct 379 YPPPSGGAYPPP---SGGAYPPPSGGA 402
Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 37/70 (53%), Gaps = 14/70 (20%)
Query 24 HEPPPAAPPGGSGYAPPP-----PPSSGSGYPPPP----PPPGGGAYPPP-----PPSAG 69
H P + PP G PPP PP SG YPPP PPP GGAYPPP PP +G
Sbjct 317 HPPTHSYPPPSGGAYPPPSGGTYPPPSGGTYPPPSGGTYPPPSGGAYPPPSGGTYPPPSG 376
Query 70 GYAPPPPGPA 79
G PPP G A
Sbjct 377 GTYPPPSGGA 386
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/71 (51%), Positives = 38/71 (54%), Gaps = 20/71 (28%)
Query 5 PPPGGSYPPPPPPPGPSGGHEPPPAAPPGGSGYAPPPPPSSGSGYPPPP----PPPGGGA 60
PP GG+YPPP GG PPP+ G PPP SG YPPP PPP GGA
Sbjct 349 PPSGGTYPPPS------GGAYPPPSG-----GTYPPP---SGGTYPPPSGGAYPPPSGGA 394
Query 61 YPPPPPSAGGY 71
Y PPPS G Y
Sbjct 395 Y--PPPSGGAY 403
>gi|336179278|ref|YP_004584653.1| serine/threonine protein kinase [Frankia symbiont of Datisca
glomerata]
gi|334860258|gb|AEH10732.1| serine/threonine protein kinase [Frankia symbiont of Datisca
glomerata]
Length=554
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/68 (34%), Positives = 33/68 (49%), Gaps = 24/68 (35%)
Query 171 IGSSIGKSVLKFKVVSETTGQPIGFGMSVVRQLAHFIDAIICFVGFLFPLWDAKRQTLAD 230
+G + + + F +DA+ +VGFL+PLWDAKRQT AD
Sbjct 508 LGRAFVRRLCHF------------------------LDALPFYVGFLWPLWDAKRQTFAD 543
Query 231 KIMTTVCV 238
KIM +V +
Sbjct 544 KIMKSVVI 551
Lambda K H
0.318 0.141 0.475
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 332206503090
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40