BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1080c
Length=164
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608220|ref|NP_215596.1| transcription elongation factor Gre... 335 2e-90
gi|41407125|ref|NP_959961.1| transcription elongation factor Gre... 327 4e-88
gi|254820658|ref|ZP_05225659.1| transcription elongation factor ... 323 4e-87
gi|118616090|ref|YP_904422.1| transcription elongation factor Gr... 323 7e-87
gi|240170287|ref|ZP_04748946.1| transcription elongation factor ... 322 1e-86
gi|342861671|ref|ZP_08718317.1| transcription elongation factor ... 320 4e-86
gi|699276|gb|AAA63039.1| greA [Mycobacterium leprae] 320 6e-86
gi|15828286|ref|NP_302549.1| transcription elongation factor Gre... 319 1e-85
gi|118462687|ref|YP_880450.1| transcription elongation factor Gr... 317 4e-85
gi|169628294|ref|YP_001701943.1| transcription elongation factor... 312 1e-83
gi|118469204|ref|YP_889509.1| transcription elongation factor Gr... 302 9e-81
gi|120405620|ref|YP_955449.1| transcription elongation factor Gr... 302 1e-80
gi|108801108|ref|YP_641305.1| transcription elongation factor Gr... 302 1e-80
gi|111022813|ref|YP_705785.1| transcription elongation factor Gr... 298 2e-79
gi|312138729|ref|YP_004006065.1| transcription elongation factor... 297 3e-79
gi|145222636|ref|YP_001133314.1| transcription elongation factor... 296 6e-79
gi|229491945|ref|ZP_04385765.1| transcription elongation factor ... 296 9e-79
gi|226307748|ref|YP_002767708.1| transcription elongation factor... 295 1e-78
gi|333989666|ref|YP_004522280.1| transcription elongation factor... 295 1e-78
gi|343925082|ref|ZP_08764614.1| transcription elongation factor ... 293 8e-78
gi|296140831|ref|YP_003648074.1| transcription elongation factor... 290 4e-77
gi|262201591|ref|YP_003272799.1| transcription elongation factor... 288 2e-76
gi|296394382|ref|YP_003659266.1| GreA/GreB family elongation fac... 287 3e-76
gi|54026800|ref|YP_121042.1| transcription elongation factor Gre... 286 1e-75
gi|317508388|ref|ZP_07966060.1| transcription elongation factor ... 283 8e-75
gi|326381820|ref|ZP_08203513.1| transcription elongation factor ... 276 8e-73
gi|333921082|ref|YP_004494663.1| transcription elongation factor... 270 5e-71
gi|319949700|ref|ZP_08023731.1| transcription elongation factor ... 234 3e-60
gi|256374856|ref|YP_003098516.1| transcription elongation factor... 233 6e-60
gi|237785171|ref|YP_002905876.1| transcription elongation factor... 228 2e-58
gi|331694808|ref|YP_004331047.1| transcription elongation factor... 226 9e-58
gi|134097505|ref|YP_001103166.1| transcription elongation factor... 225 1e-57
gi|257057149|ref|YP_003134981.1| transcription elongation factor... 225 2e-57
gi|302530117|ref|ZP_07282459.1| transcription elongation factor ... 223 5e-57
gi|172040278|ref|YP_001799992.1| transcription elongation factor... 222 1e-56
gi|340794906|ref|YP_004760369.1| transcription elongation factor... 222 2e-56
gi|334563797|ref|ZP_08516788.1| transcription elongation factor ... 220 4e-56
gi|68536557|ref|YP_251262.1| transcription elongation factor Gre... 219 9e-56
gi|260577699|ref|ZP_05845634.1| transcription elongation factor ... 218 3e-55
gi|336326159|ref|YP_004606125.1| transcription elongation factor... 216 1e-54
gi|300789906|ref|YP_003770197.1| transcription elongation factor... 215 2e-54
gi|213965457|ref|ZP_03393652.1| transcription elongation factor ... 213 5e-54
gi|258654538|ref|YP_003203694.1| transcription elongation factor... 212 1e-53
gi|325003219|ref|ZP_08124331.1| transcription elongation factor ... 206 6e-52
gi|254231364|ref|ZP_04924691.1| transcription elongation factor ... 198 2e-49
gi|302865433|ref|YP_003834070.1| transcription elongation factor... 197 4e-49
gi|330465846|ref|YP_004403589.1| transcription elongation factor... 194 5e-48
gi|38233521|ref|NP_939288.1| transcription elongation factor Gre... 193 8e-48
gi|227548191|ref|ZP_03978240.1| transcription elongation factor ... 190 6e-47
gi|255324383|ref|ZP_05365500.1| transcription elongation factor ... 190 8e-47
>gi|15608220|ref|NP_215596.1| transcription elongation factor GreA [Mycobacterium tuberculosis
H37Rv]
gi|15840516|ref|NP_335553.1| transcription elongation factor GreA [Mycobacterium tuberculosis
CDC1551]
gi|31792271|ref|NP_854764.1| transcription elongation factor GreA [Mycobacterium bovis AF2122/97]
83 more sequence titles
Length=164
Score = 335 bits (858), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 164/164 (100%), Positives = 164/164 (100%), Gaps = 0/164 (0%)
Query 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ
Sbjct 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
Query 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL 120
EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL
Sbjct 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL 120
Query 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPYHS 164
EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPYHS
Sbjct 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPYHS 164
>gi|41407125|ref|NP_959961.1| transcription elongation factor GreA [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|254774087|ref|ZP_05215603.1| transcription elongation factor GreA [Mycobacterium avium subsp.
avium ATCC 25291]
gi|41395476|gb|AAS03344.1| GreA [Mycobacterium avium subsp. paratuberculosis K-10]
gi|48928144|gb|AAT47750.1| probable transcription elongation factor G [Mycobacterium avium]
gi|336461452|gb|EGO40322.1| transcription elongation factor GreA [Mycobacterium avium subsp.
paratuberculosis S397]
Length=164
Score = 327 bits (838), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 159/164 (97%), Positives = 162/164 (99%), Gaps = 0/164 (0%)
Query 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
MTDT VTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ
Sbjct 1 MTDTSVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
Query 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL 120
EARIRQLQDLL+NAKVGEAPKQSGVALPGSVVKVYYNGDKSD+ETFLIATRQEGV+DGKL
Sbjct 61 EARIRQLQDLLNNAKVGEAPKQSGVALPGSVVKVYYNGDKSDTETFLIATRQEGVNDGKL 120
Query 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPYHS 164
EVYSPNSPLGGALIDAKVGETRSYTVPNGSTV VTLVSAEPYHS
Sbjct 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVEVTLVSAEPYHS 164
>gi|254820658|ref|ZP_05225659.1| transcription elongation factor GreA [Mycobacterium intracellulare
ATCC 13950]
gi|296169944|ref|ZP_06851553.1| transcription elongation factor GreA [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295895408|gb|EFG75113.1| transcription elongation factor GreA [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=164
Score = 323 bits (829), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 157/164 (96%), Positives = 161/164 (99%), Gaps = 0/164 (0%)
Query 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
MTDT VTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ
Sbjct 1 MTDTSVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
Query 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL 120
EARIRQLQDLL+NAKVGEAPKQSGVALPGSVVKVYYNGDKSD+ETFLIATRQEGV+DGKL
Sbjct 61 EARIRQLQDLLNNAKVGEAPKQSGVALPGSVVKVYYNGDKSDTETFLIATRQEGVNDGKL 120
Query 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPYHS 164
EVYSPNSPLGGALIDAKVGETRSY VPNG+TV VTLVSAEPYHS
Sbjct 121 EVYSPNSPLGGALIDAKVGETRSYVVPNGNTVEVTLVSAEPYHS 164
>gi|118616090|ref|YP_904422.1| transcription elongation factor GreA [Mycobacterium ulcerans
Agy99]
gi|183984358|ref|YP_001852649.1| transcription elongation factor GreA [Mycobacterium marinum M]
gi|118568200|gb|ABL02951.1| transcription elongation factor GreA [Mycobacterium ulcerans
Agy99]
gi|183177684|gb|ACC42794.1| transcription elongation factor GreA [Mycobacterium marinum M]
Length=164
Score = 323 bits (827), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 154/164 (94%), Positives = 161/164 (99%), Gaps = 0/164 (0%)
Query 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
MTDTQVTWLTQESHDRLKAELD LIANRP+IAAEINDRREEGDLRENGGYHAAREEQGQQ
Sbjct 1 MTDTQVTWLTQESHDRLKAELDHLIANRPIIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
Query 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL 120
EARIRQLQDLL+NAKVGEAPKQSG+ALPGSVVKVYYNGD+SDSETFLIATRQEGV+DGKL
Sbjct 61 EARIRQLQDLLNNAKVGEAPKQSGIALPGSVVKVYYNGDQSDSETFLIATRQEGVNDGKL 120
Query 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPYHS 164
EVYSPNSPLGGALIDAKVGETRSYTVPNGS + VTL+SAEPYHS
Sbjct 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSVIEVTLISAEPYHS 164
>gi|240170287|ref|ZP_04748946.1| transcription elongation factor GreA [Mycobacterium kansasii
ATCC 12478]
Length=164
Score = 322 bits (825), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 156/164 (96%), Positives = 161/164 (99%), Gaps = 0/164 (0%)
Query 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
MTDTQVTWLTQESHDRLKAELDQLIANRP+IAAEINDRREEGDLRENGGYHAAREEQGQQ
Sbjct 1 MTDTQVTWLTQESHDRLKAELDQLIANRPIIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
Query 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL 120
EARIRQLQDLLSNAKVGEAP QSGVALPGSVVKVYYNGD+SD+ETFLIATRQEGV+DGKL
Sbjct 61 EARIRQLQDLLSNAKVGEAPTQSGVALPGSVVKVYYNGDESDTETFLIATRQEGVNDGKL 120
Query 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPYHS 164
EVYSPNSPLGGALIDAKVGETRSY VPNG+TV VTLVSAEPYHS
Sbjct 121 EVYSPNSPLGGALIDAKVGETRSYKVPNGNTVEVTLVSAEPYHS 164
>gi|342861671|ref|ZP_08718317.1| transcription elongation factor GreA [Mycobacterium colombiense
CECT 3035]
gi|342130805|gb|EGT84101.1| transcription elongation factor GreA [Mycobacterium colombiense
CECT 3035]
Length=164
Score = 320 bits (821), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 155/164 (95%), Positives = 160/164 (98%), Gaps = 0/164 (0%)
Query 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
MTDT VTWLTQESHDRLKAELD LIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ
Sbjct 1 MTDTSVTWLTQESHDRLKAELDHLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
Query 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL 120
EARIRQLQDLL+NAKVGEAPKQSGVALPGSVVKVYYNGDKSD+ETFLIATRQEGV+DGKL
Sbjct 61 EARIRQLQDLLNNAKVGEAPKQSGVALPGSVVKVYYNGDKSDTETFLIATRQEGVNDGKL 120
Query 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPYHS 164
EVYSPNSPLGGALIDAK GETRSYTVPNG+TV VTL+SAEPYHS
Sbjct 121 EVYSPNSPLGGALIDAKEGETRSYTVPNGNTVEVTLISAEPYHS 164
>gi|699276|gb|AAA63039.1| greA [Mycobacterium leprae]
Length=202
Score = 320 bits (819), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 155/164 (95%), Positives = 161/164 (99%), Gaps = 0/164 (0%)
Query 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ
Sbjct 39 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 98
Query 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL 120
EARIRQLQDLL+ AKVGEAPKQSGVALPGSVVKVYYN DKSD+ETFLIATRQEGV++GKL
Sbjct 99 EARIRQLQDLLNIAKVGEAPKQSGVALPGSVVKVYYNDDKSDTETFLIATRQEGVNEGKL 158
Query 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPYHS 164
EVYSPNSPLGGALIDAKVGETRSYTVPNG+TV VTL+SAEPYHS
Sbjct 159 EVYSPNSPLGGALIDAKVGETRSYTVPNGNTVQVTLISAEPYHS 202
>gi|15828286|ref|NP_302549.1| transcription elongation factor GreA [Mycobacterium leprae TN]
gi|221230763|ref|YP_002504179.1| transcription elongation factor GreA [Mycobacterium leprae Br4923]
gi|6226624|sp|P46808.2|GREA_MYCLE RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|254799564|sp|B8ZT53.1|GREA_MYCLB RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|13093979|emb|CAC31909.1| transcription elongation factor G [Mycobacterium leprae]
gi|219933870|emb|CAR72491.1| transcription elongation factor G [Mycobacterium leprae Br4923]
Length=164
Score = 319 bits (817), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 155/164 (95%), Positives = 161/164 (99%), Gaps = 0/164 (0%)
Query 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ
Sbjct 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
Query 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL 120
EARIRQLQDLL+ AKVGEAPKQSGVALPGSVVKVYYN DKSD+ETFLIATRQEGV++GKL
Sbjct 61 EARIRQLQDLLNIAKVGEAPKQSGVALPGSVVKVYYNDDKSDTETFLIATRQEGVNEGKL 120
Query 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPYHS 164
EVYSPNSPLGGALIDAKVGETRSYTVPNG+TV VTL+SAEPYHS
Sbjct 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGNTVQVTLISAEPYHS 164
>gi|118462687|ref|YP_880450.1| transcription elongation factor GreA [Mycobacterium avium 104]
gi|118163974|gb|ABK64871.1| transcription elongation factor GreA [Mycobacterium avium 104]
Length=159
Score = 317 bits (812), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 154/159 (97%), Positives = 158/159 (99%), Gaps = 0/159 (0%)
Query 6 VTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQEARIR 65
+TWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQEARIR
Sbjct 1 MTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQEARIR 60
Query 66 QLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKLEVYSP 125
QLQDLL+NAKVGEAPKQSGVALPGSVVKVYYNGDKSD+ETFLIATRQEGV+DGKLEVYSP
Sbjct 61 QLQDLLNNAKVGEAPKQSGVALPGSVVKVYYNGDKSDTETFLIATRQEGVNDGKLEVYSP 120
Query 126 NSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPYHS 164
NSPLGGALIDAKVGETRSYTVPNGSTV VTLVSAEPYHS
Sbjct 121 NSPLGGALIDAKVGETRSYTVPNGSTVEVTLVSAEPYHS 159
>gi|169628294|ref|YP_001701943.1| transcription elongation factor GreA [Mycobacterium abscessus
ATCC 19977]
gi|238688921|sp|B1MKJ7.1|GREA_MYCA9 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|169240261|emb|CAM61289.1| Hypothetical transcription elongation factor GreA [Mycobacterium
abscessus]
Length=164
Score = 312 bits (799), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 151/163 (93%), Positives = 158/163 (97%), Gaps = 0/163 (0%)
Query 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEIN+RREEGDLRENGGYHAAREEQGQQ
Sbjct 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINERREEGDLRENGGYHAAREEQGQQ 60
Query 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL 120
EARIRQLQ+LL+NAKVGEAP QSGVALPGSVVKVYY+GDK D+ETFLIATRQEGV DGKL
Sbjct 61 EARIRQLQELLNNAKVGEAPTQSGVALPGSVVKVYYDGDKGDTETFLIATRQEGVKDGKL 120
Query 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPYH 163
EVYSP+SPLGGALIDAKVGETRSYTVPNG+ V VTLVSAEPYH
Sbjct 121 EVYSPSSPLGGALIDAKVGETRSYTVPNGTEVQVTLVSAEPYH 163
>gi|118469204|ref|YP_889509.1| transcription elongation factor GreA [Mycobacterium smegmatis
str. MC2 155]
gi|166200678|sp|A0R2X1.1|GREA_MYCS2 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|118170491|gb|ABK71387.1| transcription elongation factor GreA [Mycobacterium smegmatis
str. MC2 155]
Length=164
Score = 302 bits (774), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 145/163 (89%), Positives = 158/163 (97%), Gaps = 0/163 (0%)
Query 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
MTDTQVTWLTQE+ DRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ
Sbjct 1 MTDTQVTWLTQEAFDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
Query 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL 120
EARIRQLQ+LL+NAKVGEAPKQSGVALPGSVVKVYY+ D++D+ETFLIATRQEG+SDGKL
Sbjct 61 EARIRQLQELLNNAKVGEAPKQSGVALPGSVVKVYYDDDENDTETFLIATRQEGISDGKL 120
Query 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPYH 163
EVYSPNSPLGGAL+DAKVGE+R+YTVP+G+ V VTLVSAEPY
Sbjct 121 EVYSPNSPLGGALLDAKVGESRTYTVPSGNVVKVTLVSAEPYQ 163
>gi|120405620|ref|YP_955449.1| transcription elongation factor GreA [Mycobacterium vanbaalenii
PYR-1]
gi|166200681|sp|A1TE43.1|GREA_MYCVP RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|119958438|gb|ABM15443.1| transcription elongation factor GreA [Mycobacterium vanbaalenii
PYR-1]
Length=164
Score = 302 bits (774), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 144/163 (89%), Positives = 159/163 (98%), Gaps = 0/163 (0%)
Query 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
MTDTQVTWLT+ES+DRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAARE+QGQ+
Sbjct 1 MTDTQVTWLTEESYDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREQQGQE 60
Query 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL 120
EARIRQLQ+LL+NAKVGEAPKQSG+ALPGSVVKVYY+ D+ D+ETFLI TR++GVSDGKL
Sbjct 61 EARIRQLQELLNNAKVGEAPKQSGIALPGSVVKVYYDDDEKDTETFLIGTREQGVSDGKL 120
Query 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPYH 163
EVYSPNSPLGGALIDAKVGE+RSYTVP+G+TV VTLVSAEPYH
Sbjct 121 EVYSPNSPLGGALIDAKVGESRSYTVPSGNTVKVTLVSAEPYH 163
>gi|108801108|ref|YP_641305.1| transcription elongation factor GreA [Mycobacterium sp. MCS]
gi|119870249|ref|YP_940201.1| transcription elongation factor GreA [Mycobacterium sp. KMS]
gi|126436946|ref|YP_001072637.1| transcription elongation factor GreA [Mycobacterium sp. JLS]
gi|108771527|gb|ABG10249.1| transcription elongation factor GreA [Mycobacterium sp. MCS]
gi|119696338|gb|ABL93411.1| transcription elongation factor GreA [Mycobacterium sp. KMS]
gi|126236746|gb|ABO00147.1| transcription elongation factor GreA [Mycobacterium sp. JLS]
Length=164
Score = 302 bits (773), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 145/164 (89%), Positives = 158/164 (97%), Gaps = 0/164 (0%)
Query 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
MTDTQVTWLTQES+DRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAARE+QGQ+
Sbjct 1 MTDTQVTWLTQESYDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREQQGQE 60
Query 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL 120
EARIRQLQ+LL+NAKVGEAPKQSGVALPGSVVKVYY+GD+ D+ETFLI TR++ V+DGKL
Sbjct 61 EARIRQLQELLNNAKVGEAPKQSGVALPGSVVKVYYDGDEKDTETFLIGTREQAVNDGKL 120
Query 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPYHS 164
EVYSP SPLG ALIDAKVGETR+YTVP+GSTV VTLVSAEPYHS
Sbjct 121 EVYSPASPLGAALIDAKVGETRTYTVPSGSTVEVTLVSAEPYHS 164
>gi|111022813|ref|YP_705785.1| transcription elongation factor GreA [Rhodococcus jostii RHA1]
gi|226365321|ref|YP_002783104.1| transcription elongation factor GreA [Rhodococcus opacus B4]
gi|110822343|gb|ABG97627.1| transcription elongation factor [Rhodococcus jostii RHA1]
gi|226243811|dbj|BAH54159.1| transcription elongation factor GreA [Rhodococcus opacus B4]
Length=164
Score = 298 bits (763), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 141/164 (86%), Positives = 157/164 (96%), Gaps = 0/164 (0%)
Query 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
MT+TQVTWLTQESHDRLK+ELDQLIANRPVIAAEIN+RREEGDL+ENGGYHAAREEQGQQ
Sbjct 1 MTETQVTWLTQESHDRLKSELDQLIANRPVIAAEINERREEGDLKENGGYHAAREEQGQQ 60
Query 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL 120
EARIRQLQ+LL++AKVGEAP QSGVALPGSVVKVYY+GD+ D+ETFLIATR+EG D KL
Sbjct 61 EARIRQLQELLNSAKVGEAPTQSGVALPGSVVKVYYDGDEKDTETFLIATREEGARDNKL 120
Query 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPYHS 164
EVYSPNSPLGGAL++AKVGETR YT+PNGS++ VTLVSAEPYHS
Sbjct 121 EVYSPNSPLGGALLEAKVGETREYTLPNGSSMKVTLVSAEPYHS 164
>gi|312138729|ref|YP_004006065.1| transcription elongation factor grea/greb [Rhodococcus equi 103S]
gi|325676579|ref|ZP_08156257.1| transcription elongation factor GreA [Rhodococcus equi ATCC 33707]
gi|311888068|emb|CBH47380.1| transcription elongation factor GreA/GreB [Rhodococcus equi 103S]
gi|325552757|gb|EGD22441.1| transcription elongation factor GreA [Rhodococcus equi ATCC 33707]
Length=164
Score = 297 bits (761), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 141/163 (87%), Positives = 155/163 (96%), Gaps = 0/163 (0%)
Query 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
MT+TQVTWLTQESHDRLK ELDQLIANRPVIAAEIN+RREEGDL+ENGGYHAAREEQGQQ
Sbjct 1 MTETQVTWLTQESHDRLKNELDQLIANRPVIAAEINERREEGDLKENGGYHAAREEQGQQ 60
Query 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL 120
EARIRQLQ+LL+NAKVGEAP QSGVALPGSVVKVYY+GD+SD+ETFLIATR+EG D KL
Sbjct 61 EARIRQLQELLNNAKVGEAPTQSGVALPGSVVKVYYDGDESDTETFLIATREEGARDNKL 120
Query 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPYH 163
EVYSPNSPLGGAL++AKVGETR YT+PNGS + VTL+SAEPYH
Sbjct 121 EVYSPNSPLGGALLNAKVGETREYTLPNGSLMKVTLISAEPYH 163
>gi|145222636|ref|YP_001133314.1| transcription elongation factor GreA [Mycobacterium gilvum PYR-GCK]
gi|315443101|ref|YP_004075980.1| transcription elongation factor GreA [Mycobacterium sp. Spyr1]
gi|145215122|gb|ABP44526.1| transcription elongation factor GreA [Mycobacterium gilvum PYR-GCK]
gi|315261404|gb|ADT98145.1| transcription elongation factor GreA [Mycobacterium sp. Spyr1]
Length=164
Score = 296 bits (758), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 140/163 (86%), Positives = 160/163 (99%), Gaps = 0/163 (0%)
Query 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
MTDTQVTWLT+E++DRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAARE+QGQ+
Sbjct 1 MTDTQVTWLTEEAYDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREQQGQE 60
Query 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL 120
EARIRQLQ+LL++AKVGEAPKQSG+ALPGSVVKVYY+ D++D+ETFLI TR++GV+DGKL
Sbjct 61 EARIRQLQELLNDAKVGEAPKQSGIALPGSVVKVYYDDDENDTETFLIGTREQGVNDGKL 120
Query 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPYH 163
EVYSPNSPLGGALIDAKVGE+RSYTVP+G+TV VTLVSAEP+H
Sbjct 121 EVYSPNSPLGGALIDAKVGESRSYTVPSGNTVKVTLVSAEPWH 163
>gi|229491945|ref|ZP_04385765.1| transcription elongation factor GreA [Rhodococcus erythropolis
SK121]
gi|229321158|gb|EEN86959.1| transcription elongation factor GreA [Rhodococcus erythropolis
SK121]
Length=167
Score = 296 bits (757), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 140/164 (86%), Positives = 156/164 (96%), Gaps = 0/164 (0%)
Query 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
MT+TQVTWLTQESHDRLK ELDQLIANRPVIAAEIN+RREEGDL+ENGGYHAAREEQGQQ
Sbjct 4 MTETQVTWLTQESHDRLKNELDQLIANRPVIAAEINERREEGDLKENGGYHAAREEQGQQ 63
Query 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL 120
EARIRQLQ+LL++AKVGEAP QSGVALPGSVVKVYY+GD+SD+ETFLIATR+EG D KL
Sbjct 64 EARIRQLQELLNSAKVGEAPTQSGVALPGSVVKVYYDGDESDTETFLIATREEGARDAKL 123
Query 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPYHS 164
EVYSPNSPLGGAL++AKVG+TR Y +PNGST+ VTL+SAEPYHS
Sbjct 124 EVYSPNSPLGGALLEAKVGDTREYNLPNGSTMKVTLLSAEPYHS 167
>gi|226307748|ref|YP_002767708.1| transcription elongation factor GreA [Rhodococcus erythropolis
PR4]
gi|259647649|sp|C1A2Y4.1|GREA_RHOE4 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|226186865|dbj|BAH34969.1| transcription elongation factor GreA [Rhodococcus erythropolis
PR4]
Length=164
Score = 295 bits (756), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 140/164 (86%), Positives = 156/164 (96%), Gaps = 0/164 (0%)
Query 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
MT+TQVTWLTQESHDRLK ELDQLIANRPVIAAEIN+RREEGDL+ENGGYHAAREEQGQQ
Sbjct 1 MTETQVTWLTQESHDRLKNELDQLIANRPVIAAEINERREEGDLKENGGYHAAREEQGQQ 60
Query 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL 120
EARIRQLQ+LL++AKVGEAP QSGVALPGSVVKVYY+GD+SD+ETFLIATR+EG D KL
Sbjct 61 EARIRQLQELLNSAKVGEAPTQSGVALPGSVVKVYYDGDESDTETFLIATREEGARDAKL 120
Query 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPYHS 164
EVYSPNSPLGGAL++AKVG+TR Y +PNGST+ VTL+SAEPYHS
Sbjct 121 EVYSPNSPLGGALLEAKVGDTREYNLPNGSTMKVTLLSAEPYHS 164
>gi|333989666|ref|YP_004522280.1| transcription elongation factor GreA [Mycobacterium sp. JDM601]
gi|333485634|gb|AEF35026.1| transcription elongation factor GreA [Mycobacterium sp. JDM601]
Length=164
Score = 295 bits (756), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 144/162 (89%), Positives = 154/162 (96%), Gaps = 0/162 (0%)
Query 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ
Sbjct 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
Query 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL 120
EARIRQLQ+LL+NAKVGEAP QSGVALPGSVVKV+Y+GDKSD+ETFLIATRQEG+S+ L
Sbjct 61 EARIRQLQELLNNAKVGEAPTQSGVALPGSVVKVFYDGDKSDTETFLIATRQEGISEENL 120
Query 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPY 162
EVYSPNSPLG AL+ AK GE RSYTVP+G+TV VTLVSAEPY
Sbjct 121 EVYSPNSPLGHALLGAKEGEERSYTVPSGNTVKVTLVSAEPY 162
>gi|343925082|ref|ZP_08764614.1| transcription elongation factor GreA [Gordonia alkanivorans NBRC
16433]
gi|343765013|dbj|GAA11540.1| transcription elongation factor GreA [Gordonia alkanivorans NBRC
16433]
Length=164
Score = 293 bits (749), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 140/163 (86%), Positives = 153/163 (94%), Gaps = 0/163 (0%)
Query 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
MTDTQVTWLTQESHDRLK+ELD LIANRPVIAAEIN+RREEGDL+ENGGYHAAREEQGQQ
Sbjct 1 MTDTQVTWLTQESHDRLKSELDSLIANRPVIAAEINERREEGDLKENGGYHAAREEQGQQ 60
Query 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL 120
EARIRQLQ+LL+NAKVGEAP QSGVALPGSVV VYY+GD+ D+ETFLIATR+EG S GKL
Sbjct 61 EARIRQLQELLNNAKVGEAPTQSGVALPGSVVTVYYDGDEKDTETFLIATREEGASGGKL 120
Query 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPYH 163
E YSP+SPLG ALIDAKVGETR Y+VP+G+TV VTLVSAEPYH
Sbjct 121 ETYSPSSPLGSALIDAKVGETREYSVPSGATVKVTLVSAEPYH 163
>gi|296140831|ref|YP_003648074.1| transcription elongation factor GreA [Tsukamurella paurometabola
DSM 20162]
gi|296028965|gb|ADG79735.1| transcription elongation factor GreA [Tsukamurella paurometabola
DSM 20162]
Length=164
Score = 290 bits (743), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 138/164 (85%), Positives = 153/164 (94%), Gaps = 0/164 (0%)
Query 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
MTDTQVTWL ESH+RLK ELD LIANRPVIAAEIN+RREEGDL+ENGGYHAAREEQGQQ
Sbjct 1 MTDTQVTWLPPESHERLKNELDALIANRPVIAAEINERREEGDLKENGGYHAAREEQGQQ 60
Query 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL 120
EARIRQLQ+LL+NAKVGEAP QSGVALPGSVVKVYY+GD+ D+ETFLIATR+EG DG+L
Sbjct 61 EARIRQLQELLNNAKVGEAPTQSGVALPGSVVKVYYDGDEKDTETFLIATREEGAQDGEL 120
Query 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPYHS 164
EVYSPNSPLG ALIDAKVGE+R YT+P+G+T+ VTLVSAEPYHS
Sbjct 121 EVYSPNSPLGAALIDAKVGESREYTIPSGATIKVTLVSAEPYHS 164
>gi|262201591|ref|YP_003272799.1| transcription elongation factor GreA [Gordonia bronchialis DSM
43247]
gi|262084938|gb|ACY20906.1| transcription elongation factor GreA [Gordonia bronchialis DSM
43247]
Length=164
Score = 288 bits (736), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 138/163 (85%), Positives = 150/163 (93%), Gaps = 0/163 (0%)
Query 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
MTDTQVTWLTQESHDRLK ELD LIANRPVIAAEIN+RREEGDL+ENGGYHAAREEQGQQ
Sbjct 1 MTDTQVTWLTQESHDRLKGELDSLIANRPVIAAEINERREEGDLKENGGYHAAREEQGQQ 60
Query 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL 120
EARIRQLQ+LL+NAKVGEAP QSGVALPGSVV VYY+GD+ D+ETFLIATR+EG G L
Sbjct 61 EARIRQLQELLNNAKVGEAPTQSGVALPGSVVTVYYDGDEKDTETFLIATREEGAQGGDL 120
Query 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPYH 163
E YSP+SPLG ALIDAKVGETR Y+VP+G+TV VTLVSAEPYH
Sbjct 121 ETYSPSSPLGSALIDAKVGETREYSVPSGATVKVTLVSAEPYH 163
>gi|296394382|ref|YP_003659266.1| GreA/GreB family elongation factor [Segniliparus rotundus DSM
44985]
gi|296181529|gb|ADG98435.1| GreA/GreB family elongation factor [Segniliparus rotundus DSM
44985]
Length=163
Score = 287 bits (735), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 139/163 (86%), Positives = 150/163 (93%), Gaps = 1/163 (0%)
Query 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
MT+ VTWLTQE+HDRLKAELD LIANRPV+AAEIN+RREEGDL+ENGGYHAAREEQGQQ
Sbjct 1 MTEN-VTWLTQEAHDRLKAELDSLIANRPVLAAEINERREEGDLKENGGYHAAREEQGQQ 59
Query 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL 120
EARIRQLQDLL+ AKVG AP QSGVALPGSVV VYY+GDKSD+ETFLIATR+EG GKL
Sbjct 60 EARIRQLQDLLATAKVGAAPTQSGVALPGSVVTVYYDGDKSDTETFLIATREEGAQGGKL 119
Query 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPYH 163
EVYSPNSPLGGAL+DAKVGETR YTVPNG+ V VTLVSAEPYH
Sbjct 120 EVYSPNSPLGGALLDAKVGETREYTVPNGAVVKVTLVSAEPYH 162
>gi|54026800|ref|YP_121042.1| transcription elongation factor GreA [Nocardia farcinica IFM
10152]
gi|54018308|dbj|BAD59678.1| putative transcription elongation factor [Nocardia farcinica
IFM 10152]
Length=164
Score = 286 bits (731), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 136/163 (84%), Positives = 152/163 (94%), Gaps = 0/163 (0%)
Query 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
MT+T VTWLTQESHDRLK+ELD LIANRPVIAAEIN+RREEGDL+ENGGYHAAREEQGQQ
Sbjct 1 MTETNVTWLTQESHDRLKSELDALIANRPVIAAEINERREEGDLKENGGYHAAREEQGQQ 60
Query 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL 120
EARIRQLQ+LL+NAKVG AP +SGVALPGSVVKVYY+GD++D+ETFLIATR+EG+ L
Sbjct 61 EARIRQLQELLNNAKVGVAPTKSGVALPGSVVKVYYDGDENDTETFLIATREEGLGHSDL 120
Query 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPYH 163
E YSPNSPLGGALIDAKVGETR YT+PNG+T+ VTLVSAEPYH
Sbjct 121 ETYSPNSPLGGALIDAKVGETREYTLPNGNTMKVTLVSAEPYH 163
>gi|317508388|ref|ZP_07966060.1| transcription elongation factor GreA [Segniliparus rugosus ATCC
BAA-974]
gi|316253312|gb|EFV12710.1| transcription elongation factor GreA [Segniliparus rugosus ATCC
BAA-974]
Length=163
Score = 283 bits (723), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 136/163 (84%), Positives = 148/163 (91%), Gaps = 1/163 (0%)
Query 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
MT+ VTWLTQE+HDRLK ELD LIANRP +AAEIN+RREEGDL+ENGGYHAAREEQGQQ
Sbjct 1 MTE-NVTWLTQEAHDRLKVELDTLIANRPALAAEINERREEGDLKENGGYHAAREEQGQQ 59
Query 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL 120
EARIRQLQDLL+ AKVG AP QSGVALPGSVV VYY+GDK+D+ETFLIATR+EG GKL
Sbjct 60 EARIRQLQDLLATAKVGAAPTQSGVALPGSVVTVYYDGDKNDTETFLIATREEGAQSGKL 119
Query 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPYH 163
EVYSPNSPLGGAL+DAKVGETR YTVPNG+ V VTLVSAEPYH
Sbjct 120 EVYSPNSPLGGALLDAKVGETREYTVPNGAVVKVTLVSAEPYH 162
>gi|326381820|ref|ZP_08203513.1| transcription elongation factor GreA [Gordonia neofelifaecis
NRRL B-59395]
gi|326199246|gb|EGD56427.1| transcription elongation factor GreA [Gordonia neofelifaecis
NRRL B-59395]
Length=162
Score = 276 bits (706), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 134/163 (83%), Positives = 149/163 (92%), Gaps = 2/163 (1%)
Query 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
MTD VTWLT ES+DRLK ELD LIANRPVIAAEIN+RREEGDL+ENGGYHAAREEQGQQ
Sbjct 1 MTDAGVTWLTPESYDRLKGELDSLIANRPVIAAEINERREEGDLKENGGYHAAREEQGQQ 60
Query 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL 120
EARIRQLQDLL+ AKVGEAPKQSGVALPGSVV VYY+GD+SD ETFLIATR+EG G +
Sbjct 61 EARIRQLQDLLNKAKVGEAPKQSGVALPGSVVTVYYDGDESDKETFLIATREEG--SGDI 118
Query 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPYH 163
E+YSP+SPLG ALIDAKVGE+R+YTVP+G+ +SVTLVSAEPYH
Sbjct 119 EIYSPSSPLGAALIDAKVGESRTYTVPSGAEISVTLVSAEPYH 161
>gi|333921082|ref|YP_004494663.1| transcription elongation factor greA [Amycolicicoccus subflavus
DQS3-9A1]
gi|333483303|gb|AEF41863.1| Transcription elongation factor greA [Amycolicicoccus subflavus
DQS3-9A1]
Length=164
Score = 270 bits (690), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 129/163 (80%), Positives = 147/163 (91%), Gaps = 0/163 (0%)
Query 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
MTDT+VTWLTQES+DRL EL LIANRP IAAEIN RREEGDLRENGGYHAAREEQGQQ
Sbjct 1 MTDTKVTWLTQESYDRLDRELQTLIANRPKIAAEINARREEGDLRENGGYHAAREEQGQQ 60
Query 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL 120
EARIRQLQ+LL+NAKVGEAPK+SGVALPGSVVKVYY+GD+SD+ETFL+ATR+E S +L
Sbjct 61 EARIRQLQELLNNAKVGEAPKESGVALPGSVVKVYYDGDESDTETFLLATREESTSSEQL 120
Query 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPYH 163
E YSP+SPLG AL+DAKVG+TR Y +PNG T++VTL+SAEPY
Sbjct 121 ETYSPSSPLGSALLDAKVGDTREYKLPNGGTMTVTLLSAEPYQ 163
>gi|319949700|ref|ZP_08023731.1| transcription elongation factor GreA [Dietzia cinnamea P4]
gi|319436630|gb|EFV91719.1| transcription elongation factor GreA [Dietzia cinnamea P4]
Length=165
Score = 234 bits (597), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 113/162 (70%), Positives = 133/162 (83%), Gaps = 0/162 (0%)
Query 3 DTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQEA 62
DTQV WLTQ+S+DRL AE + LIANRPVIAAEIN+RREEGDL+EN GYHAARE+QGQ+EA
Sbjct 4 DTQVHWLTQDSYDRLMAEKEALIANRPVIAAEINERREEGDLKENAGYHAAREQQGQEEA 63
Query 63 RIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKLEV 122
RIR + DLL+NA+VGE P +SGVAL GSVV+ YYNG++ ETFLI TR EG LE+
Sbjct 64 RIRTIDDLLANAQVGETPTESGVALIGSVVRAYYNGNEDTKETFLIGTRGEGSGKDDLEI 123
Query 123 YSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPYHS 164
YSP+SPLG A++ AK GETR YT PNG VSVT+V+AEPY S
Sbjct 124 YSPDSPLGKAVLGAKNGETREYTAPNGKKVSVTVVTAEPYQS 165
>gi|256374856|ref|YP_003098516.1| transcription elongation factor GreA [Actinosynnema mirum DSM
43827]
gi|255919159|gb|ACU34670.1| transcription elongation factor GreA [Actinosynnema mirum DSM
43827]
Length=162
Score = 233 bits (595), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 116/164 (71%), Positives = 137/164 (84%), Gaps = 2/164 (1%)
Query 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
M+DT+VTWLTQE++DRLKAELD++I NRPVIAAEIN RREEGDLRENGGYHAAREEQG+Q
Sbjct 1 MSDTEVTWLTQEAYDRLKAELDEMIENRPVIAAEINARREEGDLRENGGYHAAREEQGKQ 60
Query 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL 120
EARIRQLQ+LL AKVGEAP +G+A PG V+ V Y GD ++E FL+ATR+EG + G
Sbjct 61 EARIRQLQELLRVAKVGEAPTVTGIAAPGMVLTVRYEGD-DETEEFLLATREEG-AHGGT 118
Query 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPYHS 164
EVYSP+SPLG AL+ AK GETR Y +PNGST+ VTL+ A PY S
Sbjct 119 EVYSPSSPLGKALLGAKEGETREYELPNGSTMKVTLIKAVPYAS 162
>gi|237785171|ref|YP_002905876.1| transcription elongation factor GreA [Corynebacterium kroppenstedtii
DSM 44385]
gi|237758083|gb|ACR17333.1| Transcription elongation factor [Corynebacterium kroppenstedtii
DSM 44385]
Length=168
Score = 228 bits (581), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 111/160 (70%), Positives = 130/160 (82%), Gaps = 0/160 (0%)
Query 3 DTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQEA 62
DT WLTQE++DRLK ELD L ANRPVIAAEIN+RREEGDL+ENGGYHAARE+QGQ+EA
Sbjct 4 DTNTRWLTQEAYDRLKKELDDLKANRPVIAAEINERREEGDLKENGGYHAAREQQGQEEA 63
Query 63 RIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKLEV 122
RI L++LL +A +GEAP QSGVAL GSVV VYY+GD+ D+ETFLI TR S+ LE
Sbjct 64 RIAYLEELLDSATIGEAPSQSGVALVGSVVHVYYDGDEDDTETFLIGTRGVHSSNTDLET 123
Query 123 YSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPY 162
YS ++PLG A++ AK GETR Y PNGSTVSVT+V AEPY
Sbjct 124 YSTDAPLGAAIVGAKEGETREYQTPNGSTVSVTIVKAEPY 163
>gi|331694808|ref|YP_004331047.1| transcription elongation factor GreA [Pseudonocardia dioxanivorans
CB1190]
gi|326949497|gb|AEA23194.1| transcription elongation factor GreA [Pseudonocardia dioxanivorans
CB1190]
Length=163
Score = 226 bits (576), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 113/162 (70%), Positives = 134/162 (83%), Gaps = 3/162 (1%)
Query 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
+TDTQVTWLTQE+ DRLK ELDQLIANRPVIAAEIN RREEGDL+ENGGYHAAREEQGQQ
Sbjct 3 VTDTQVTWLTQEAFDRLKNELDQLIANRPVIAAEINARREEGDLKENGGYHAAREEQGQQ 62
Query 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL 120
EARIRQLQ+LL A+VG AP + VA PG+V+ V Y+ D D+E L+ +R+EG S G L
Sbjct 63 EARIRQLQELLRTAQVGTAPTSTDVASPGTVLTVRYDDD--DTEQVLLGSREEG-SHGDL 119
Query 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPY 162
+V SPNSPLG AL+ AKVGETR Y++P+G T+ VTLV+ EP+
Sbjct 120 QVISPNSPLGAALLGAKVGETREYSLPDGGTMKVTLVAVEPF 161
>gi|134097505|ref|YP_001103166.1| transcription elongation factor G [Saccharopolyspora erythraea
NRRL 2338]
gi|291009354|ref|ZP_06567327.1| transcription elongation factor GreA [Saccharopolyspora erythraea
NRRL 2338]
gi|166200697|sp|A4F866.1|GREA_SACEN RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|133910128|emb|CAM00241.1| transcription elongation factor G [Saccharopolyspora erythraea
NRRL 2338]
Length=162
Score = 225 bits (574), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 109/162 (68%), Positives = 137/162 (85%), Gaps = 2/162 (1%)
Query 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
M++TQVTWLTQ++ DRLK+ELD+L+ NRPVIAA+IN+ REEGDL+ENGGYHAAREEQG
Sbjct 1 MSETQVTWLTQDAFDRLKSELDELVGNRPVIAAKINEAREEGDLKENGGYHAAREEQGHL 60
Query 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL 120
E+RIRQLQ+LL AKVG+ P ++GVA PGSV+ V Y+ D+ ++E FL+ATR+EG + G L
Sbjct 61 ESRIRQLQELLRTAKVGDVPTEAGVAKPGSVLTVRYD-DEDETEKFLLATREEG-AHGDL 118
Query 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPY 162
EVYSP+SPLG AL+DAK GETR Y +PNG T+ VTLV AEP+
Sbjct 119 EVYSPSSPLGQALLDAKEGETREYELPNGGTMKVTLVKAEPF 160
>gi|257057149|ref|YP_003134981.1| transcription elongation factor GreA [Saccharomonospora viridis
DSM 43017]
gi|256587021|gb|ACU98154.1| transcription elongation factor GreA [Saccharomonospora viridis
DSM 43017]
Length=172
Score = 225 bits (573), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 112/162 (70%), Positives = 134/162 (83%), Gaps = 2/162 (1%)
Query 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
++D++VTWLTQ+++DRLK ELD+LIANRPVIAA+IN REEGDL+ENGGYHAAREEQGQQ
Sbjct 4 VSDSKVTWLTQDAYDRLKNELDELIANRPVIAAKINASREEGDLKENGGYHAAREEQGQQ 63
Query 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL 120
EARIR LQ+LL +AKVGEAPK G+A PG V+ V Y+GD D ETFL+ATR+EG S G L
Sbjct 64 EARIRHLQELLRSAKVGEAPKDDGIAEPGMVLTVRYDGD-DDEETFLLATREEGGS-GSL 121
Query 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPY 162
EVYSP+SPLG AL+ AK E+R Y +PNG T VTL+ A PY
Sbjct 122 EVYSPDSPLGKALLGAKENESREYQLPNGKTQKVTLIKAVPY 163
>gi|302530117|ref|ZP_07282459.1| transcription elongation factor greA [Streptomyces sp. AA4]
gi|302439012|gb|EFL10828.1| transcription elongation factor greA [Streptomyces sp. AA4]
Length=163
Score = 223 bits (569), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 110/162 (68%), Positives = 131/162 (81%), Gaps = 2/162 (1%)
Query 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
M+DT+VTWLTQ+++DRLK ELD++I NRPVIAA IND REEGDL+ENGGYHAAREEQGQ
Sbjct 1 MSDTKVTWLTQDAYDRLKHELDEMIENRPVIAARINDSREEGDLKENGGYHAAREEQGQA 60
Query 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL 120
EARIR LQ+LL NAKVGEAP G A PG V+ V Y+GD + E FL+ATR+EG ++G L
Sbjct 61 EARIRHLQELLRNAKVGEAPDDDGTAGPGKVLTVKYDGD-DEEEKFLLATREEG-AEGAL 118
Query 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPY 162
+VYSP SPLG AL+ AK GE+R Y +PNG T+ VTLV A PY
Sbjct 119 DVYSPESPLGKALLGAKEGESREYELPNGKTMKVTLVKAVPY 160
>gi|172040278|ref|YP_001799992.1| transcription elongation factor GreA [Corynebacterium urealyticum
DSM 7109]
gi|171851582|emb|CAQ04558.1| unnamed protein product [Corynebacterium urealyticum DSM 7109]
Length=174
Score = 222 bits (565), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 109/163 (67%), Positives = 129/163 (80%), Gaps = 0/163 (0%)
Query 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
M D Q TWLTQES+DRL AEL L NRPV+AAEIN+RREEGDL+ENGGYHAARE+QGQ+
Sbjct 1 MADNQTTWLTQESYDRLNAELFALKENRPVLAAEINERREEGDLKENGGYHAAREQQGQE 60
Query 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL 120
EARI L++LL NA +GEAP++SGVAL G+VV VYY+ D+ D ETFLI TR S+ +L
Sbjct 61 EARIAYLEELLDNATIGEAPQESGVALVGTVVHVYYDDDEEDKETFLIGTRGLESSNPEL 120
Query 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPYH 163
E YS ++PLG AL+ AKVGETR Y P G TV VTLV AEPY+
Sbjct 121 ETYSTDAPLGAALVGAKVGETREYETPTGDTVRVTLVEAEPYN 163
>gi|340794906|ref|YP_004760369.1| transcription elongation factor [Corynebacterium variabile DSM
44702]
gi|340534816|gb|AEK37296.1| Transcription elongation factor [Corynebacterium variabile DSM
44702]
Length=173
Score = 222 bits (565), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 109/162 (68%), Positives = 127/162 (79%), Gaps = 0/162 (0%)
Query 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
M D Q TWLTQES+DRL EL L NRP +AAEIN+RREEGDL+ENGGYHAARE+QGQ+
Sbjct 1 MADNQTTWLTQESYDRLNDELAALKGNRPALAAEINERREEGDLKENGGYHAAREQQGQE 60
Query 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL 120
EARI L++LL NA +GEAP +SGVAL GSVV VYY+GD+ D ETFLI TR S+ L
Sbjct 61 EARIVYLEELLDNATIGEAPAESGVALVGSVVHVYYDGDEDDKETFLIGTRGLESSNPDL 120
Query 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPY 162
E YS ++PLG AL+ AK GETR Y PNGS +SVTLV+AEPY
Sbjct 121 ETYSTDAPLGAALVGAKEGETREYAAPNGSKISVTLVTAEPY 162
>gi|334563797|ref|ZP_08516788.1| transcription elongation factor GreA [Corynebacterium bovis DSM
20582]
Length=175
Score = 220 bits (561), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 107/162 (67%), Positives = 128/162 (80%), Gaps = 0/162 (0%)
Query 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
M D Q TWLTQES DRL EL L ANRP +AAEIN+RREEGDL+ENGGYHAARE+QGQ+
Sbjct 1 MADNQTTWLTQESFDRLNDELTALKANRPALAAEINERREEGDLKENGGYHAAREQQGQE 60
Query 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL 120
EARI L++LL +A +GEAP++SGVAL GSVV VYY+GD+ D ETFLI TR S+ L
Sbjct 61 EARIAYLEELLDSATIGEAPQESGVALVGSVVHVYYDGDEDDKETFLIGTRGLESSNPDL 120
Query 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPY 162
E YS ++PLG A++ AKVGETR Y+ PNG TV+VT+ AEPY
Sbjct 121 ETYSTDAPLGAAIVGAKVGETREYSTPNGDTVTVTVTQAEPY 162
>gi|68536557|ref|YP_251262.1| transcription elongation factor GreA [Corynebacterium jeikeium
K411]
gi|68264156|emb|CAI37644.1| greA [Corynebacterium jeikeium K411]
Length=173
Score = 219 bits (559), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 107/162 (67%), Positives = 129/162 (80%), Gaps = 0/162 (0%)
Query 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
M + Q WLTQES+DRL AEL L NRPV+AAEIN+RREEGDL+ENGGYHAARE+QGQ+
Sbjct 1 MAENQTRWLTQESYDRLNAELTALKENRPVLAAEINERREEGDLKENGGYHAAREQQGQE 60
Query 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL 120
EARI L++LL +A +GEAP++SGVAL GSV+ VYY+GD+ D ETFLI TR S+ L
Sbjct 61 EARITYLEELLDSATIGEAPQESGVALVGSVIHVYYDGDEDDKETFLIGTRGLESSNPDL 120
Query 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPY 162
E YS ++PLG A++ AKVGETR Y P G TVSVT+VSAEPY
Sbjct 121 ETYSTDAPLGAAIVGAKVGETREYQTPAGDTVSVTIVSAEPY 162
>gi|260577699|ref|ZP_05845634.1| transcription elongation factor GreA [Corynebacterium jeikeium
ATCC 43734]
gi|258604094|gb|EEW17336.1| transcription elongation factor GreA [Corynebacterium jeikeium
ATCC 43734]
Length=173
Score = 218 bits (554), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 106/162 (66%), Positives = 128/162 (80%), Gaps = 0/162 (0%)
Query 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
M + Q WLTQES+DRL EL L NRPV+AAEIN+RREEGDL+ENGGYHAARE+QGQ+
Sbjct 1 MAENQTRWLTQESYDRLNTELTALKENRPVLAAEINERREEGDLKENGGYHAAREQQGQE 60
Query 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL 120
EARI L++LL +A +GEAP++SGVAL GSV+ VYY+GD+ D ETFLI TR S+ L
Sbjct 61 EARITYLEELLDSATIGEAPQESGVALVGSVIHVYYDGDEDDKETFLIGTRGLESSNPDL 120
Query 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPY 162
E YS ++PLG A++ AKVGETR Y P G TVSVT+VSAEPY
Sbjct 121 ETYSTDAPLGAAIVGAKVGETREYQTPAGDTVSVTIVSAEPY 162
>gi|336326159|ref|YP_004606125.1| transcription elongation factor [Corynebacterium resistens DSM
45100]
gi|336102141|gb|AEI09961.1| Transcription elongation factor [Corynebacterium resistens DSM
45100]
Length=173
Score = 216 bits (550), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 108/162 (67%), Positives = 129/162 (80%), Gaps = 0/162 (0%)
Query 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
M D Q TWLTQES+DRL AEL L NRPV+AAEIN+RREEGDL+ENGGYHAARE+QGQ+
Sbjct 1 MADNQTTWLTQESYDRLNAELTALKENRPVLAAEINERREEGDLKENGGYHAAREQQGQE 60
Query 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL 120
EARI L++LL NA +GEAP++SGVAL GSV+ VYY+ D+ D ETFLI TR S+ L
Sbjct 61 EARIAYLEELLDNATIGEAPQESGVALVGSVIHVYYDDDEDDKETFLIGTRGLESSNPDL 120
Query 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPY 162
E YS ++PLG A++ AKVGE+R Y PNG TV VT+VSAEPY
Sbjct 121 ETYSTDAPLGAAIVGAKVGESREYQTPNGDTVKVTIVSAEPY 162
>gi|300789906|ref|YP_003770197.1| transcription elongation factor GreA [Amycolatopsis mediterranei
U32]
gi|299799420|gb|ADJ49795.1| transcription elongation factor GreA [Amycolatopsis mediterranei
U32]
gi|340531577|gb|AEK46782.1| transcription elongation factor GreA [Amycolatopsis mediterranei
S699]
Length=167
Score = 215 bits (547), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 107/162 (67%), Positives = 128/162 (80%), Gaps = 2/162 (1%)
Query 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
++DT+VTWLTQ+++DRLK ELD++I NRPVIAA IND REEGDL+ENGGYHAAREEQGQ
Sbjct 4 VSDTKVTWLTQDAYDRLKHELDEMIENRPVIAARINDSREEGDLKENGGYHAAREEQGQA 63
Query 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL 120
EARIR LQ+LL +AKVGE P G A PG V+ V Y GD D E FL+ATR+EG ++G+L
Sbjct 64 EARIRHLQELLRSAKVGEKPANDGTAGPGKVLTVRYEGDDED-EKFLLATREEG-AEGEL 121
Query 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPY 162
+VYSP SPLG AL+ AK GE+R Y +PNG VTLV A PY
Sbjct 122 DVYSPESPLGKALLGAKEGESREYELPNGKVQKVTLVKAVPY 163
>gi|213965457|ref|ZP_03393652.1| transcription elongation factor GreA [Corynebacterium amycolatum
SK46]
gi|213951841|gb|EEB63228.1| transcription elongation factor GreA [Corynebacterium amycolatum
SK46]
Length=170
Score = 213 bits (543), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 104/156 (67%), Positives = 127/156 (82%), Gaps = 0/156 (0%)
Query 8 WLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQL 67
WLTQES+D+LK+EL+ L NRPVIAAEIN+RREEGDL+EN GY AARE+QGQ+EARIR L
Sbjct 10 WLTQESYDKLKSELEALYENRPVIAAEINERREEGDLKENAGYDAAREQQGQEEARIRYL 69
Query 68 QDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKLEVYSPNS 127
+DLL A VGE P++SGVAL G+VV VYY+GD+ D+ETFLI TR S+ LE YS +S
Sbjct 70 EDLLQRATVGEIPQESGVALVGTVVHVYYDGDEDDTETFLIGTRGADSSNPNLETYSTDS 129
Query 128 PLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPYH 163
PLG AL+ AK GETR+YT P+G VSVT++ AEPY+
Sbjct 130 PLGKALVGAKEGETRTYTSPSGDEVSVTVIKAEPYN 165
>gi|258654538|ref|YP_003203694.1| transcription elongation factor GreA [Nakamurella multipartita
DSM 44233]
gi|258557763|gb|ACV80705.1| transcription elongation factor GreA [Nakamurella multipartita
DSM 44233]
Length=163
Score = 212 bits (540), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 102/162 (63%), Positives = 127/162 (79%), Gaps = 1/162 (0%)
Query 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
MT T VTWLTQE+HDRLK ELD+L+ +RPVIAAEIN RREEGDL+ENGGYHAAR+EQ +Q
Sbjct 1 MTGTGVTWLTQEAHDRLKHELDELVLHRPVIAAEINARREEGDLKENGGYHAARDEQAKQ 60
Query 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL 120
E+RIR LQ+LL +A+VG AP GV PG VV + Y+GD D ETFL+ +R+EGV G +
Sbjct 61 ESRIRHLQELLRDAQVGVAPADDGVVEPGMVVTIAYDGDDDDKETFLLGSREEGVH-GSM 119
Query 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPY 162
VYSP SPLG A++ A GE+R YT+PNG T V++V A+P+
Sbjct 120 PVYSPQSPLGQAILGASRGESREYTLPNGRTQKVSVVEAKPF 161
>gi|325003219|ref|ZP_08124331.1| transcription elongation factor G [Pseudonocardia sp. P1]
Length=162
Score = 206 bits (525), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 103/162 (64%), Positives = 127/162 (79%), Gaps = 2/162 (1%)
Query 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
MTDTQ TWLTQ+++DRLK+ELD LI NRPVIAAEIN RREEGDL+ENGGYHAAREEQGQQ
Sbjct 1 MTDTQATWLTQDAYDRLKSELDGLIENRPVIAAEINARREEGDLKENGGYHAAREEQGQQ 60
Query 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL 120
EARIRQLQ+LL A+VG AP + A PG+V+ + Y D D+E L+ +R+EG S G L
Sbjct 61 EARIRQLQELLRTAQVGTAPSSADEAAPGTVLTLKYE-DDDDTEKVLLGSREEG-SHGDL 118
Query 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPY 162
+V SPNSPLG AL+ AK G+TR Y +P+G ++ V+LV E +
Sbjct 119 QVISPNSPLGAALLGAKPGDTREYQLPDGGSMKVSLVEVEAF 160
>gi|254231364|ref|ZP_04924691.1| transcription elongation factor greA (transcript cleavage factor
greA ) [Mycobacterium tuberculosis C]
gi|124600423|gb|EAY59433.1| transcription elongation factor greA (transcript cleavage factor
greA ) [Mycobacterium tuberculosis C]
Length=110
Score = 198 bits (503), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 96/96 (100%), Positives = 96/96 (100%), Gaps = 0/96 (0%)
Query 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ
Sbjct 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
Query 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYY 96
EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYY
Sbjct 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYY 96
>gi|302865433|ref|YP_003834070.1| transcription elongation factor GreA [Micromonospora aurantiaca
ATCC 27029]
gi|315501981|ref|YP_004080868.1| transcription elongation factor grea [Micromonospora sp. L5]
gi|302568292|gb|ADL44494.1| transcription elongation factor GreA [Micromonospora aurantiaca
ATCC 27029]
gi|315408600|gb|ADU06717.1| transcription elongation factor GreA [Micromonospora sp. L5]
Length=166
Score = 197 bits (501), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 98/156 (63%), Positives = 121/156 (78%), Gaps = 2/156 (1%)
Query 7 TWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQ 66
TWL+Q+++DRL+AELD+LIANRPVIAAEIN RREEGDLRENGGYHAAREEQG+ E RI
Sbjct 11 TWLSQDAYDRLQAELDELIANRPVIAAEINARREEGDLRENGGYHAAREEQGKAEGRILY 70
Query 67 LQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKLEVYSPN 126
L++LL AKVGEAP V+ PG VVK+Y++ D DSETFL+ +R E S L VYSP
Sbjct 71 LKELLRTAKVGEAPDTDAVS-PGMVVKIYFDDDADDSETFLLGSR-EIASTTDLTVYSPE 128
Query 127 SPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPY 162
S LG A++ K G+T +YT P+G+ + VT+VS EPY
Sbjct 129 SALGKAILGGKAGQTCTYTAPSGADIKVTIVSFEPY 164
>gi|330465846|ref|YP_004403589.1| transcription elongation factor grea [Verrucosispora maris AB-18-032]
gi|328808817|gb|AEB42989.1| transcription elongation factor grea [Verrucosispora maris AB-18-032]
Length=165
Score = 194 bits (492), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 95/156 (61%), Positives = 120/156 (77%), Gaps = 2/156 (1%)
Query 7 TWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQ 66
TWL+Q+++DRLKAELD+LIANRP+IAAEIN RREEGDLRENGGYHAAREEQG+ E RI
Sbjct 10 TWLSQDAYDRLKAELDELIANRPIIAAEINARREEGDLRENGGYHAAREEQGKAEGRILY 69
Query 67 LQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKLEVYSPN 126
L++LL A+VGEAP VA PG VV +Y++ D D+ETFL+ +R E S L VYSP
Sbjct 70 LKELLRTAQVGEAPTADAVA-PGMVVTIYFDDDADDTETFLLGSR-EIASTTDLTVYSPE 127
Query 127 SPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPY 162
S LG A++ K G+T +YT P+G+ + VT+VS EP+
Sbjct 128 SALGKAILGGKAGQTCTYTAPSGADIKVTVVSFEPF 163
>gi|38233521|ref|NP_939288.1| transcription elongation factor GreA [Corynebacterium diphtheriae
NCTC 13129]
gi|38199781|emb|CAE49444.1| transcription elongation factor [Corynebacterium diphtheriae]
Length=173
Score = 193 bits (490), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 95/164 (58%), Positives = 121/164 (74%), Gaps = 0/164 (0%)
Query 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
M D Q ++T E+ +L+ EL+ LIA+RPV+AAEIN+RREEGDL+EN GY AARE Q Q+
Sbjct 1 MADNQKQYITPETKAKLEEELNALIAHRPVVAAEINERREEGDLKENAGYDAAREMQDQE 60
Query 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL 120
EARI+Q+ ++L+N+ A GVA GSVV VYYNGDK+D ETFLI TR + L
Sbjct 61 EARIKQISEILANSTTERAGIVEGVAHIGSVVHVYYNGDKNDKETFLIGTRAAASDNKDL 120
Query 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPYHS 164
E YS SPLG A++ A+ GETR Y+ PNG+T+SVT+VSAEPY S
Sbjct 121 ETYSEQSPLGAAVVGAQEGETRQYSAPNGNTISVTIVSAEPYDS 164
>gi|227548191|ref|ZP_03978240.1| transcription elongation factor GreA [Corynebacterium lipophiloflavum
DSM 44291]
gi|227079752|gb|EEI17715.1| transcription elongation factor GreA [Corynebacterium lipophiloflavum
DSM 44291]
Length=174
Score = 190 bits (482), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 94/164 (58%), Positives = 119/164 (73%), Gaps = 0/164 (0%)
Query 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
M +TQ ++T E +L+ EL LI NRPVIAAEIN+RREEGDL+EN GY AARE+Q Q+
Sbjct 1 MAETQKQYITPEMKAKLENELQALIDNRPVIAAEINERREEGDLKENAGYDAAREQQDQE 60
Query 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL 120
EARI+Q+ ++L+NA + GVA GSVV V+YNGD+SD ETFLI TR + L
Sbjct 61 EARIKQISEILANATTERSGVIEGVAQVGSVVHVFYNGDESDKETFLIGTRAASTGNKDL 120
Query 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPYHS 164
E YS NSPLG A++ A GETR+Y+ PNG ++VT+VSAEPY S
Sbjct 121 ETYSENSPLGAAVVGASEGETRTYSAPNGREITVTIVSAEPYDS 164
>gi|255324383|ref|ZP_05365500.1| transcription elongation factor GreA [Corynebacterium tuberculostearicum
SK141]
gi|311740763|ref|ZP_07714590.1| transcription elongation factor GreA [Corynebacterium pseudogenitalium
ATCC 33035]
gi|255298289|gb|EET77589.1| transcription elongation factor GreA [Corynebacterium tuberculostearicum
SK141]
gi|311304283|gb|EFQ80359.1| transcription elongation factor GreA [Corynebacterium pseudogenitalium
ATCC 33035]
Length=173
Score = 190 bits (482), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 94/164 (58%), Positives = 117/164 (72%), Gaps = 0/164 (0%)
Query 1 MTDTQVTWLTQESHDRLKAELDQLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQ 60
M + Q ++T E+ +L+AEL +LI +RPV+AAEIN+RREEGDL+EN GY AARE Q Q+
Sbjct 1 MAEQQKQYITPETKAKLEAELQELIDHRPVVAAEINERREEGDLKENAGYDAAREMQDQE 60
Query 61 EARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKL 120
EARI+Q+ ++L+NA Q GVA GSVV VYYNGDK D ETFLI TR + L
Sbjct 61 EARIKQISEVLANATTERGAVQEGVAHTGSVVHVYYNGDKDDKETFLIGTRAAASDNKDL 120
Query 121 EVYSPNSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAEPYHS 164
E YS SPLG A++ A+ GETR YT PNG T+SVT+ SA PY S
Sbjct 121 ETYSEQSPLGAAILGAQEGETREYTAPNGKTISVTIESAAPYDS 164
Lambda K H
0.308 0.128 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129330420882
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40