BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1083 Length=88 Score E Sequences producing significant alignments: (Bits) Value gi|289555134|ref|ZP_06444344.1| conserved hypothetical protein [... 176 8e-43 gi|15608223|ref|NP_215599.1| hypothetical protein Rv1083 [Mycoba... 175 2e-42 gi|340626095|ref|YP_004744547.1| hypothetical protein MCAN_10901... 146 1e-33 gi|118616087|ref|YP_904419.1| hypothetical protein MUL_0197 [Myc... 104 4e-21 gi|240170284|ref|ZP_04748943.1| hypothetical protein MkanA1_1330... 96.7 1e-18 gi|226307745|ref|YP_002767705.1| hypothetical protein RER_42580 ... 91.7 3e-17 gi|229491939|ref|ZP_04385759.1| u1740e [Rhodococcus erythropolis... 91.3 4e-17 gi|169628297|ref|YP_001701946.1| hypothetical protein MAB_1204 [... 87.0 8e-16 gi|296169948|ref|ZP_06851557.1| conserved hypothetical protein [... 86.7 1e-15 gi|41408805|ref|NP_961641.1| hypothetical protein MAP2707c [Myco... 86.3 1e-15 gi|699260|gb|AAA63023.1| u1740e [Mycobacterium leprae] 83.6 9e-15 gi|15828283|ref|NP_302546.1| hypothetical protein ML2390 [Mycoba... 82.8 2e-14 gi|333921078|ref|YP_004494659.1| hypothetical protein AS9A_3418 ... 82.8 2e-14 gi|108801105|ref|YP_641302.1| hypothetical protein Mmcs_4141 [My... 82.4 2e-14 gi|118464212|ref|YP_880453.1| hypothetical protein MAV_1207 [Myc... 80.9 5e-14 gi|342861674|ref|ZP_08718320.1| hypothetical protein MCOL_22411 ... 80.5 7e-14 gi|118467683|ref|YP_889506.1| hypothetical protein MSMEG_5260 [M... 79.7 1e-13 gi|254820661|ref|ZP_05225662.1| hypothetical protein MintA_12071... 77.4 6e-13 gi|262201595|ref|YP_003272803.1| hypothetical protein Gbro_1640 ... 75.5 3e-12 gi|120405618|ref|YP_955447.1| hypothetical protein Mvan_4666 [My... 73.9 8e-12 gi|343925086|ref|ZP_08764618.1| hypothetical protein GOALK_033_0... 70.5 7e-11 gi|333989669|ref|YP_004522283.1| hypothetical protein JDM601_102... 69.7 1e-10 gi|302530114|ref|ZP_07282456.1| predicted protein [Streptomyces ... 69.7 1e-10 gi|111022816|ref|YP_705788.1| hypothetical protein RHA1_ro05853 ... 69.7 1e-10 gi|226365324|ref|YP_002783107.1| hypothetical protein ROP_59150 ... 69.3 2e-10 gi|300789903|ref|YP_003770194.1| hypothetical protein AMED_8089 ... 64.3 6e-09 gi|325676576|ref|ZP_08156254.1| hypothetical protein HMPREF0724_... 63.9 8e-09 gi|312138732|ref|YP_004006068.1| membrane protein [Rhodococcus e... 63.9 8e-09 gi|296140827|ref|YP_003648070.1| hypothetical protein Tpau_3144 ... 61.6 4e-08 gi|54026797|ref|YP_121039.1| hypothetical protein nfa48230 [Noca... 60.8 6e-08 gi|326381824|ref|ZP_08203517.1| hypothetical protein SCNU_02722 ... 60.1 1e-07 gi|331694811|ref|YP_004331050.1| hypothetical protein Psed_0945 ... 57.0 1e-06 gi|284989521|ref|YP_003408075.1| hypothetical protein Gobs_0942 ... 52.8 2e-05 gi|319949697|ref|ZP_08023728.1| hypothetical membrane protein [D... 52.4 2e-05 gi|296394380|ref|YP_003659264.1| hypothetical protein Srot_1976 ... 51.6 4e-05 gi|317508390|ref|ZP_07966062.1| hypothetical protein HMPREF9336_... 50.1 1e-04 gi|145222639|ref|YP_001133317.1| hypothetical protein Mflv_2051 ... 49.3 2e-04 gi|256374859|ref|YP_003098519.1| hypothetical protein Amir_0710 ... 48.5 3e-04 gi|291298256|ref|YP_003509534.1| hypothetical protein Snas_0729 ... 48.1 4e-04 gi|134097508|ref|YP_001103169.1| hypothetical protein SACE_0910 ... 45.8 0.002 gi|159036525|ref|YP_001535778.1| hypothetical protein Sare_0869 ... 45.4 0.003 gi|340794903|ref|YP_004760366.1| hypothetical protein CVAR_1940 ... 45.4 0.003 gi|145593484|ref|YP_001157781.1| hypothetical protein Strop_0926... 44.7 0.004 gi|258654536|ref|YP_003203692.1| hypothetical protein Namu_4416 ... 44.7 0.005 gi|238062790|ref|ZP_04607499.1| hypothetical protein MCAG_03756 ... 43.9 0.007 gi|330465849|ref|YP_004403592.1| hypothetical protein VAB18032_0... 43.1 0.013 gi|145295139|ref|YP_001137960.1| hypothetical protein cgR_1082 [... 43.1 0.015 gi|19552214|ref|NP_600216.1| hypothetical protein NCgl0949 [Cory... 42.7 0.016 gi|255324386|ref|ZP_05365503.1| conserved hypothetical protein [... 42.7 0.019 gi|302865436|ref|YP_003834073.1| hypothetical protein Micau_0933... 40.4 0.090 >gi|289555134|ref|ZP_06444344.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|298524581|ref|ZP_07011990.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|289439766|gb|EFD22259.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|298494375|gb|EFI29669.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|328459626|gb|AEB05049.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 4207] Length=116 Score = 176 bits (447), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 88/88 (100%), Positives = 88/88 (100%), Gaps = 0/88 (0%) Query 1 VNQILLSVIAEGGPGNTGPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFDRD 60 VNQILLSVIAEGGPGNTGPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFDRD Sbjct 29 VNQILLSVIAEGGPGNTGPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFDRD 88 Query 61 HPELDQAADEGTDRDGPARPPGPPHESG 88 HPELDQAADEGTDRDGPARPPGPPHESG Sbjct 89 HPELDQAADEGTDRDGPARPPGPPHESG 116 >gi|15608223|ref|NP_215599.1| hypothetical protein Rv1083 [Mycobacterium tuberculosis H37Rv] gi|15840519|ref|NP_335556.1| hypothetical protein MT1114 [Mycobacterium tuberculosis CDC1551] gi|31792274|ref|NP_854767.1| hypothetical protein Mb1112 [Mycobacterium bovis AF2122/97] 69 more sequence titles Length=88 Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 87/88 (99%), Positives = 88/88 (100%), Gaps = 0/88 (0%) Query 1 VNQILLSVIAEGGPGNTGPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFDRD 60 +NQILLSVIAEGGPGNTGPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFDRD Sbjct 1 MNQILLSVIAEGGPGNTGPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFDRD 60 Query 61 HPELDQAADEGTDRDGPARPPGPPHESG 88 HPELDQAADEGTDRDGPARPPGPPHESG Sbjct 61 HPELDQAADEGTDRDGPARPPGPPHESG 88 >gi|340626095|ref|YP_004744547.1| hypothetical protein MCAN_10901 [Mycobacterium canettii CIPT 140010059] gi|340004285|emb|CCC43426.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059] Length=88 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 84/87 (97%), Positives = 85/87 (98%), Gaps = 0/87 (0%) Query 1 VNQILLSVIAEGGPGNTGPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFDRD 60 +NQILLSVIAEGGPGNTGPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFD D Sbjct 1 MNQILLSVIAEGGPGNTGPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFDPD 60 Query 61 HPELDQAADEGTDRDGPARPPGPPHES 87 HPE DQAADEGTDRDGPARPPGPPHES Sbjct 61 HPEFDQAADEGTDRDGPARPPGPPHES 87 >gi|118616087|ref|YP_904419.1| hypothetical protein MUL_0197 [Mycobacterium ulcerans Agy99] gi|183984355|ref|YP_001852646.1| hypothetical protein MMAR_4384 [Mycobacterium marinum M] gi|118568197|gb|ABL02948.1| conserved protein [Mycobacterium ulcerans Agy99] gi|183177681|gb|ACC42791.1| conserved protein [Mycobacterium marinum M] Length=99 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 57/73 (79%), Positives = 67/73 (92%), Gaps = 0/73 (0%) Query 1 VNQILLSVIAEGGPGNTGPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFDRD 60 +NQ LL+VIA+ P NTGPDFGKASP+GLLV+V+LVIATLFL+RSMN+QL+KVP+SFDR Sbjct 1 MNQFLLTVIADDAPRNTGPDFGKASPLGLLVVVVLVIATLFLLRSMNRQLRKVPESFDRA 60 Query 61 HPELDQAADEGTD 73 HPE DQAADEGTD Sbjct 61 HPEPDQAADEGTD 73 >gi|240170284|ref|ZP_04748943.1| hypothetical protein MkanA1_13308 [Mycobacterium kansasii ATCC 12478] Length=99 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 68/99 (69%), Positives = 76/99 (77%), Gaps = 11/99 (11%) Query 1 VNQILLSVIAEGGPGNTGPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFDRD 60 +N +LLSVIA+ P N GPDFGKASPVGLLVIVLLV+ATLFLVRSMN+QLKKVP+SFDR Sbjct 1 MNGVLLSVIADDAPRNHGPDFGKASPVGLLVIVLLVVATLFLVRSMNRQLKKVPESFDRQ 60 Query 61 HPELDQAADEGTDR-----------DGPARPPGPPHESG 88 HPE DQAADEGTD +G ARPPGP + G Sbjct 61 HPEPDQAADEGTDPVTPDEPPGADGNGSARPPGPADDPG 99 >gi|226307745|ref|YP_002767705.1| hypothetical protein RER_42580 [Rhodococcus erythropolis PR4] gi|226186862|dbj|BAH34966.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length=104 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 47/76 (62%), Positives = 59/76 (78%), Gaps = 2/76 (2%) Query 14 PGN-TGPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFDRDHPELDQAADEGT 72 P N +GP+FGK+SPVGLLVI+ L+I + LVRSMN+QLKK+P++F+ DHPELDQ ADEGT Sbjct 20 PSNPSGPEFGKSSPVGLLVILALLIGVILLVRSMNRQLKKLPETFEPDHPELDQQADEGT 79 Query 73 DRDGPARP-PGPPHES 87 DR P P P+ S Sbjct 80 DRGAITAPSPAEPNVS 95 >gi|229491939|ref|ZP_04385759.1| u1740e [Rhodococcus erythropolis SK121] gi|229321152|gb|EEN86953.1| u1740e [Rhodococcus erythropolis SK121] Length=104 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 43/62 (70%), Positives = 54/62 (88%), Gaps = 1/62 (1%) Query 14 PGN-TGPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFDRDHPELDQAADEGT 72 P N +GP+FGK+SPVGLLVI+ L+I + LVRSMN+QLKK+P++F+ DHPELDQ ADEGT Sbjct 20 PSNPSGPEFGKSSPVGLLVILALLIGVILLVRSMNRQLKKLPETFEPDHPELDQQADEGT 79 Query 73 DR 74 DR Sbjct 80 DR 81 >gi|169628297|ref|YP_001701946.1| hypothetical protein MAB_1204 [Mycobacterium abscessus ATCC 19977] gi|169240264|emb|CAM61292.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=96 Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 39/68 (58%), Positives = 51/68 (75%), Gaps = 0/68 (0%) Query 5 LLSVIAEGGPGNTGPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFDRDHPEL 64 +L + E P N GPDFGKA P GL V+VLL++ T FL+RSMN L+K+P++FD +HPE Sbjct 7 VLVLADEKSPTNIGPDFGKAGPFGLTVVVLLMVGTFFLIRSMNSHLRKLPETFDPEHPEA 66 Query 65 DQAADEGT 72 DQA D+GT Sbjct 67 DQAVDDGT 74 >gi|296169948|ref|ZP_06851557.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895412|gb|EFG75117.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=102 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/102 (61%), Positives = 76/102 (75%), Gaps = 14/102 (13%) Query 1 VNQILL--SVIAEGGPGNTGPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFD 58 +N+++L S +A+G P +TGPDFGKASP+GLL++VLL+IATLFL+RSMN+QLKKVP+SFD Sbjct 1 MNRLVLTASALADGAPQHTGPDFGKASPIGLLIVVLLLIATLFLLRSMNRQLKKVPESFD 60 Query 59 RDHPELDQAADEGTD------------RDGPARPPGPPHESG 88 HPE DQAADEGTD DG RPPGP E G Sbjct 61 PKHPEPDQAADEGTDAVDEADGQPPDRADGSERPPGPGDEPG 102 >gi|41408805|ref|NP_961641.1| hypothetical protein MAP2707c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397164|gb|AAS05024.1| hypothetical protein MAP_2707c [Mycobacterium avium subsp. paratuberculosis K-10] gi|336458702|gb|EGO37662.1| hypothetical protein MAPs_09850 [Mycobacterium avium subsp. paratuberculosis S397] Length=106 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/89 (65%), Positives = 70/89 (79%), Gaps = 4/89 (4%) Query 4 ILLSVIAEGGPGNTGPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFDRDHPE 63 +L +A+G P +TGPDFGKASPVGLL++VLL+I+TLFL+RSMN+QL+KVP+SFD HPE Sbjct 6 VLSGAVADGAPHHTGPDFGKASPVGLLIVVLLLISTLFLLRSMNRQLRKVPESFDPQHPE 65 Query 64 LDQAADEGTD----RDGPARPPGPPHESG 88 DQAADEGTD D P PGP H +G Sbjct 66 PDQAADEGTDAVDAEDAPDADPGPDHANG 94 >gi|699260|gb|AAA63023.1| u1740e [Mycobacterium leprae] Length=167 Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 59/101 (59%), Positives = 73/101 (73%), Gaps = 13/101 (12%) Query 1 VNQILLSVIAEGGPGNTGPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFDRD 60 V+ I L++IA+G GPDFGKASP+GLLVIVLL++ATL L+ SMN+QLKK+P SFD + Sbjct 67 VSHIFLTLIADGELQYHGPDFGKASPMGLLVIVLLLVATLLLLWSMNRQLKKIPASFDSE 126 Query 61 HPELDQAADEG-------------TDRDGPARPPGPPHESG 88 HPELDQAADEG TDR+GP+ PP P +SG Sbjct 127 HPELDQAADEGTELGGYLDEEPSDTDRNGPSLPPEPGADSG 167 >gi|15828283|ref|NP_302546.1| hypothetical protein ML2390 [Mycobacterium leprae TN] gi|221230760|ref|YP_002504176.1| putative secreted protein [Mycobacterium leprae Br4923] gi|13093976|emb|CAC31906.1| possible secreted protein [Mycobacterium leprae] gi|219933867|emb|CAR72488.1| possible secreted protein [Mycobacterium leprae Br4923] Length=101 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 58/101 (58%), Positives = 73/101 (73%), Gaps = 13/101 (12%) Query 1 VNQILLSVIAEGGPGNTGPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFDRD 60 ++ I L++IA+G GPDFGKASP+GLLVIVLL++ATL L+ SMN+QLKK+P SFD + Sbjct 1 MSHIFLTLIADGELQYHGPDFGKASPMGLLVIVLLLVATLLLLWSMNRQLKKIPASFDSE 60 Query 61 HPELDQAADEG-------------TDRDGPARPPGPPHESG 88 HPELDQAADEG TDR+GP+ PP P +SG Sbjct 61 HPELDQAADEGTELGGYLDEEPSDTDRNGPSLPPEPGADSG 101 >gi|333921078|ref|YP_004494659.1| hypothetical protein AS9A_3418 [Amycolicicoccus subflavus DQS3-9A1] gi|333483299|gb|AEF41859.1| Hypothetical membrane protein [Amycolicicoccus subflavus DQS3-9A1] Length=93 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 37/69 (54%), Positives = 57/69 (83%), Gaps = 0/69 (0%) Query 8 VIAEGGPGNTGPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFDRDHPELDQA 67 +IA+ TGP+FGKASP+GL+VI++L+ + +FL+RSMN+ L+++P++F+ ++PE DQ Sbjct 18 IIAQDAVVPTGPEFGKASPIGLVVILVLMASMVFLLRSMNKHLRRLPETFEPENPEPDQE 77 Query 68 ADEGTDRDG 76 ADEGTDR G Sbjct 78 ADEGTDRGG 86 >gi|108801105|ref|YP_641302.1| hypothetical protein Mmcs_4141 [Mycobacterium sp. MCS] gi|119870246|ref|YP_940198.1| hypothetical protein Mkms_4216 [Mycobacterium sp. KMS] gi|126436943|ref|YP_001072634.1| hypothetical protein Mjls_4372 [Mycobacterium sp. JLS] gi|108771524|gb|ABG10246.1| conserved hypothetical protein [Mycobacterium sp. MCS] gi|119696335|gb|ABL93408.1| conserved hypothetical protein [Mycobacterium sp. KMS] gi|126236743|gb|ABO00144.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length=101 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 39/74 (53%), Positives = 54/74 (73%), Gaps = 2/74 (2%) Query 1 VNQILLSV--IAEGGPGNTGPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFD 58 + +LL+ +A+ P TGPDFGKASP GLL++ L++A LV SMN+ LK++P+SFD Sbjct 2 IETVLLATEWLAQEQPRETGPDFGKASPFGLLIVAALLVAVFLLVWSMNRHLKRLPESFD 61 Query 59 RDHPELDQAADEGT 72 +HPE DQA D+GT Sbjct 62 PEHPEPDQAVDDGT 75 >gi|118464212|ref|YP_880453.1| hypothetical protein MAV_1207 [Mycobacterium avium 104] gi|254774090|ref|ZP_05215606.1| hypothetical protein MaviaA2_05375 [Mycobacterium avium subsp. avium ATCC 25291] gi|118165499|gb|ABK66396.1| conserved hypothetical protein [Mycobacterium avium 104] Length=106 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 50/70 (72%), Positives = 62/70 (89%), Gaps = 0/70 (0%) Query 4 ILLSVIAEGGPGNTGPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFDRDHPE 63 +L +A+G P +TGPDFGKASPVGLL++VLL+I+TLFL+RSMN+QL+KVP+SFD HPE Sbjct 6 VLSGAVADGAPHHTGPDFGKASPVGLLIVVLLLISTLFLLRSMNRQLRKVPESFDPQHPE 65 Query 64 LDQAADEGTD 73 DQAADEGTD Sbjct 66 PDQAADEGTD 75 >gi|342861674|ref|ZP_08718320.1| hypothetical protein MCOL_22411 [Mycobacterium colombiense CECT 3035] gi|342130808|gb|EGT84104.1| hypothetical protein MCOL_22411 [Mycobacterium colombiense CECT 3035] Length=103 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 60/103 (59%), Positives = 73/103 (71%), Gaps = 15/103 (14%) Query 1 VNQILLSVIA-----EGGPGNTGPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPK 55 +N + L++ A +G P +TGPDFGKASPVGLL++VLL+I+TLFL+RSMN+QLKKVP+ Sbjct 1 MNHLYLALTAAGWQADGPPHHTGPDFGKASPVGLLIVVLLLISTLFLLRSMNRQLKKVPE 60 Query 56 SFDRDHPELDQAADEGTD----------RDGPARPPGPPHESG 88 SFD HPE DQAADEGTD DG R PGP E G Sbjct 61 SFDPKHPEPDQAADEGTDAVDRGGAPDHEDGSPRAPGPGDEPG 103 >gi|118467683|ref|YP_889506.1| hypothetical protein MSMEG_5260 [Mycobacterium smegmatis str. MC2 155] gi|118168970|gb|ABK69866.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=92 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 36/59 (62%), Positives = 47/59 (80%), Gaps = 0/59 (0%) Query 14 PGNTGPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFDRDHPELDQAADEGT 72 P NTGP+FGKA+P GLL+ V+L++ T LV SMN+ L+ +P+SFD +HPE DQ ADEGT Sbjct 16 PRNTGPEFGKAAPFGLLITVVLLVGTFALVWSMNRHLRNLPESFDPEHPEPDQEADEGT 74 >gi|254820661|ref|ZP_05225662.1| hypothetical protein MintA_12071 [Mycobacterium intracellulare ATCC 13950] Length=105 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 60/105 (58%), Positives = 71/105 (68%), Gaps = 17/105 (16%) Query 1 VNQILLSVIAEG-----GPGNTGPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPK 55 +N ++L A G P +TGPDFGKASPVGLL++VLL+I+TLFL+RSMN+QLKKVP+ Sbjct 1 MNHLVLLASAAGWQADNAPQHTGPDFGKASPVGLLIVVLLLISTLFLLRSMNRQLKKVPE 60 Query 56 SFDRDHPELDQAADEGTD------------RDGPARPPGPPHESG 88 SFD HPE DQAADEGTD DG RPPG E G Sbjct 61 SFDPKHPEPDQAADEGTDAVDPGAGQAPDRADGSPRPPGSGDEPG 105 >gi|262201595|ref|YP_003272803.1| hypothetical protein Gbro_1640 [Gordonia bronchialis DSM 43247] gi|262084942|gb|ACY20910.1| hypothetical protein Gbro_1640 [Gordonia bronchialis DSM 43247] Length=93 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 45/71 (64%), Positives = 56/71 (79%), Gaps = 2/71 (2%) Query 18 GPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFDRDHPELDQAADEGTDRDGP 77 GP+FGKASP+GLL+I++L+IAT FL+ SMN+QLKK+PK+FD +HPE DQA DEGT D P Sbjct 14 GPEFGKASPLGLLIIIVLLIATAFLIWSMNRQLKKLPKTFDAEHPEADQAFDEGT--DAP 71 Query 78 ARPPGPPHESG 88 A ESG Sbjct 72 ATTDSATTESG 82 >gi|120405618|ref|YP_955447.1| hypothetical protein Mvan_4666 [Mycobacterium vanbaalenii PYR-1] gi|119958436|gb|ABM15441.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=98 Score = 73.9 bits (180), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 41/88 (47%), Positives = 52/88 (60%), Gaps = 5/88 (5%) Query 6 LSVIAEGGPGNTGPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFDRDHPELD 65 L +A+ P TGPDFGKASP GL+++VLL+IA LV SMN+ L+++PKSFD D Sbjct 11 LMTLAQDSPRQTGPDFGKASPFGLIIVVLLLIAVFGLVWSMNKHLRRLPKSFDEDETAAA 70 Query 66 QAADEGT-----DRDGPARPPGPPHESG 88 AD G+ D R G ESG Sbjct 71 APADGGSVAAEPDPTNDNRTDGTERESG 98 >gi|343925086|ref|ZP_08764618.1| hypothetical protein GOALK_033_00770 [Gordonia alkanivorans NBRC 16433] gi|343765017|dbj|GAA11544.1| hypothetical protein GOALK_033_00770 [Gordonia alkanivorans NBRC 16433] Length=106 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 45/77 (59%), Positives = 60/77 (78%), Gaps = 4/77 (5%) Query 1 VNQILLSVIAEGGPGNTGPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFDRD 60 VN ++ V+A P GP+FGK+SP+GLLVI+LL++ T FL+ SM++QLKK+P+SFD + Sbjct 6 VNTVM--VVAAEEP--QGPEFGKSSPLGLLVILLLLVGTAFLIWSMSRQLKKLPESFDTE 61 Query 61 HPELDQAADEGTDRDGP 77 HPE DQA DEGTD GP Sbjct 62 HPEADQAFDEGTDPSGP 78 >gi|333989669|ref|YP_004522283.1| hypothetical protein JDM601_1029 [Mycobacterium sp. JDM601] gi|333485637|gb|AEF35029.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=84 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/64 (68%), Positives = 50/64 (79%), Gaps = 0/64 (0%) Query 14 PGNTGPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFDRDHPELDQAADEGTD 73 P TGPDFGKASP GLLV+VLL++ T LV SMN+ LK+VP+SFDR+ P DQAADEGT Sbjct 17 PRETGPDFGKASPFGLLVVVLLLLGTFGLVWSMNRHLKRVPESFDREDPAADQAADEGTL 76 Query 74 RDGP 77 GP Sbjct 77 DPGP 80 >gi|302530114|ref|ZP_07282456.1| predicted protein [Streptomyces sp. AA4] gi|302439009|gb|EFL10825.1| predicted protein [Streptomyces sp. AA4] Length=119 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 34/65 (53%), Positives = 47/65 (73%), Gaps = 5/65 (7%) Query 12 GGPGNTGPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFDRDHPELDQAADEG 71 G G G DFGK+SPVGLLV++L ++A +FLVRSM++ LKKVP++FD+ ++AA E Sbjct 27 GDNGGQGEDFGKSSPVGLLVLILFLVAVVFLVRSMSKHLKKVPQTFDQ-----EEAASET 81 Query 72 TDRDG 76 DG Sbjct 82 GSADG 86 >gi|111022816|ref|YP_705788.1| hypothetical protein RHA1_ro05853 [Rhodococcus jostii RHA1] gi|110822346|gb|ABG97630.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=106 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 36/67 (54%), Positives = 52/67 (78%), Gaps = 0/67 (0%) Query 8 VIAEGGPGNTGPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFDRDHPELDQA 67 V+A+ +GP+FGKASP+GL+VI+ L+ + LVRSMN++LK +P++F+ +HPE DQ Sbjct 15 VLAQTPSTPSGPEFGKASPIGLVVILALLAGVVLLVRSMNKKLKNLPETFEPEHPEPDQE 74 Query 68 ADEGTDR 74 DEGTDR Sbjct 75 VDEGTDR 81 >gi|226365324|ref|YP_002783107.1| hypothetical protein ROP_59150 [Rhodococcus opacus B4] gi|226243814|dbj|BAH54162.1| hypothetical membrane protein [Rhodococcus opacus B4] Length=105 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 36/67 (54%), Positives = 52/67 (78%), Gaps = 0/67 (0%) Query 8 VIAEGGPGNTGPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFDRDHPELDQA 67 V+A+ +GP+FGKASP+GL+VI+ L+ + LVRSMN++LK +P++F+ +HPE DQ Sbjct 15 VLAQTPSTPSGPEFGKASPIGLVVILALLAGVVLLVRSMNKKLKNLPETFEPEHPEPDQE 74 Query 68 ADEGTDR 74 DEGTDR Sbjct 75 VDEGTDR 81 >gi|300789903|ref|YP_003770194.1| hypothetical protein AMED_8089 [Amycolatopsis mediterranei U32] gi|299799417|gb|ADJ49792.1| conserved hypothetical protein [Amycolatopsis mediterranei U32] gi|340531574|gb|AEK46779.1| hypothetical protein RAM_41560 [Amycolatopsis mediterranei S699] Length=109 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 33/59 (56%), Positives = 41/59 (70%), Gaps = 1/59 (1%) Query 11 EGGPGNTGPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFDRDHPELDQAAD 69 G G G DFGK+SPVG LV++L +IA FLVRSM + LK+VP SFD D P + +AD Sbjct 26 NGDNGGQGEDFGKSSPVGFLVLILFLIAVAFLVRSMTKHLKRVPASFD-DPPAEEASAD 83 >gi|325676576|ref|ZP_08156254.1| hypothetical protein HMPREF0724_14037 [Rhodococcus equi ATCC 33707] gi|325552754|gb|EGD22438.1| hypothetical protein HMPREF0724_14037 [Rhodococcus equi ATCC 33707] Length=111 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 36/56 (65%), Positives = 49/56 (88%), Gaps = 0/56 (0%) Query 18 GPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFDRDHPELDQAADEGTD 73 GP+FGKASP+GL+++V L++ T+ L+RSMN+QLKK+P +F +HPE DQAADEGTD Sbjct 21 GPEFGKASPLGLVLVVALLVGTVLLIRSMNKQLKKLPDTFQPEHPEADQAADEGTD 76 >gi|312138732|ref|YP_004006068.1| membrane protein [Rhodococcus equi 103S] gi|311888071|emb|CBH47383.1| putative membrane protein [Rhodococcus equi 103S] Length=112 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 36/56 (65%), Positives = 49/56 (88%), Gaps = 0/56 (0%) Query 18 GPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFDRDHPELDQAADEGTD 73 GP+FGKASP+GL+++V L++ T+ L+RSMN+QLKK+P +F +HPE DQAADEGTD Sbjct 22 GPEFGKASPLGLVLVVALLVGTVLLIRSMNKQLKKLPDTFQPEHPEADQAADEGTD 77 >gi|296140827|ref|YP_003648070.1| hypothetical protein Tpau_3144 [Tsukamurella paurometabola DSM 20162] gi|296028961|gb|ADG79731.1| conserved hypothetical protein [Tsukamurella paurometabola DSM 20162] Length=99 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 33/64 (52%), Positives = 44/64 (69%), Gaps = 3/64 (4%) Query 14 PGNTGPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFDRDHP-ELDQAADEGT 72 P GP+FGKA+P+GL VIV L+ T L+RSMN+ +K +P+SFD + P E D+A GT Sbjct 19 PKPKGPEFGKATPLGLAVIVALLAVTFLLIRSMNKHVKNLPESFDDEQPGEGDEAG--GT 76 Query 73 DRDG 76 D G Sbjct 77 DHAG 80 >gi|54026797|ref|YP_121039.1| hypothetical protein nfa48230 [Nocardia farcinica IFM 10152] gi|54018305|dbj|BAD59675.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=95 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 38/70 (55%), Positives = 55/70 (79%), Gaps = 0/70 (0%) Query 4 ILLSVIAEGGPGNTGPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFDRDHPE 63 ++L ++A+ TGP+FGKASP+GL +++LL++ T LVRSMN+ LK +P +F+ +HPE Sbjct 1 MILELLAQTPGTPTGPEFGKASPLGLAIVLLLLVGTFLLVRSMNRHLKNLPPTFEPEHPE 60 Query 64 LDQAADEGTD 73 DQAADEGTD Sbjct 61 PDQAADEGTD 70 >gi|326381824|ref|ZP_08203517.1| hypothetical protein SCNU_02722 [Gordonia neofelifaecis NRRL B-59395] gi|326199250|gb|EGD56431.1| hypothetical protein SCNU_02722 [Gordonia neofelifaecis NRRL B-59395] Length=109 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/57 (65%), Positives = 49/57 (86%), Gaps = 0/57 (0%) Query 18 GPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFDRDHPELDQAADEGTDR 74 GP+FGKASP+GLL+I+LL++A L+RSMN+QL+K+P SFD D+P DQA D+GTDR Sbjct 21 GPEFGKASPLGLLIILLLLVAVFLLIRSMNKQLRKLPDSFDADNPAADQAFDDGTDR 77 >gi|331694811|ref|YP_004331050.1| hypothetical protein Psed_0945 [Pseudonocardia dioxanivorans CB1190] gi|326949500|gb|AEA23197.1| hypothetical protein Psed_0945 [Pseudonocardia dioxanivorans CB1190] Length=107 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/56 (49%), Positives = 39/56 (70%), Gaps = 0/56 (0%) Query 14 PGNTGPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFDRDHPELDQAAD 69 P G +FG+ASP L+VI++L IAT+ L+ SM ++L+K+PKSFD D D A + Sbjct 29 PPGKGEEFGEASPTALVVIIVLGIATVLLIVSMTRRLRKLPKSFDDDENAEDTAGE 84 >gi|284989521|ref|YP_003408075.1| hypothetical protein Gobs_0942 [Geodermatophilus obscurus DSM 43160] gi|284062766|gb|ADB73704.1| conserved hypothetical protein [Geodermatophilus obscurus DSM 43160] Length=108 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/39 (62%), Positives = 29/39 (75%), Gaps = 0/39 (0%) Query 20 DFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFD 58 D GKA P+G L+ VLL IA L LVRSM L++VP+SFD Sbjct 16 DVGKAGPIGALLTVLLFIAILLLVRSMTTHLRRVPRSFD 54 >gi|319949697|ref|ZP_08023728.1| hypothetical membrane protein [Dietzia cinnamea P4] gi|319436627|gb|EFV91716.1| hypothetical membrane protein [Dietzia cinnamea P4] Length=108 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/65 (57%), Positives = 52/65 (80%), Gaps = 0/65 (0%) Query 18 GPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFDRDHPELDQAADEGTDRDGP 77 GP+FGKASP+G+ +++LL+IAT+ LVR+MN+ +K +P+SFD ++P DQ ADEGTDR G Sbjct 36 GPEFGKASPLGIPLVLLLLIATVLLVRNMNKHIKNLPESFDVENPAPDQLADEGTDRSGV 95 Query 78 ARPPG 82 PG Sbjct 96 IGAPG 100 >gi|296394380|ref|YP_003659264.1| hypothetical protein Srot_1976 [Segniliparus rotundus DSM 44985] gi|296181527|gb|ADG98433.1| conserved hypothetical protein [Segniliparus rotundus DSM 44985] Length=72 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/76 (43%), Positives = 46/76 (61%), Gaps = 8/76 (10%) Query 2 NQILLSVIAEGGPGNTGPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFDRDH 61 + ++ ++A G PG P+ GK SP G++V++LL IA L SM + LKK+PKSFD Sbjct 3 SDFVIQLLAVGPPG---PEQGKGSPWGVVVMLLLAIAVFVLGWSMQKHLKKIPKSFDT-- 57 Query 62 PELDQAADEGTDRDGP 77 P+ + AD D D P Sbjct 58 PDAQERAD---DEDAP 70 >gi|317508390|ref|ZP_07966062.1| hypothetical protein HMPREF9336_02434 [Segniliparus rugosus ATCC BAA-974] gi|316253314|gb|EFV12712.1| hypothetical protein HMPREF9336_02434 [Segniliparus rugosus ATCC BAA-974] Length=74 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/68 (42%), Positives = 40/68 (59%), Gaps = 3/68 (4%) Query 4 ILLSVIAEGGPGNTGPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFDRDHPE 63 ++ ++A G PG P+ GK SP G+++ + LVIA L SM + LKK+PKSFD Sbjct 5 LVFQLLAVGPPG---PEQGKGSPWGVVITLFLVIAVFLLGWSMQKHLKKLPKSFDDPEAG 61 Query 64 LDQAADEG 71 A+EG Sbjct 62 EQDEAEEG 69 >gi|145222639|ref|YP_001133317.1| hypothetical protein Mflv_2051 [Mycobacterium gilvum PYR-GCK] gi|315443104|ref|YP_004075983.1| hypothetical protein Mspyr1_14750 [Mycobacterium sp. Spyr1] gi|145215125|gb|ABP44529.1| hypothetical protein Mflv_2051 [Mycobacterium gilvum PYR-GCK] gi|315261407|gb|ADT98148.1| hypothetical protein Mspyr1_14750 [Mycobacterium sp. Spyr1] Length=78 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/70 (55%), Positives = 52/70 (75%), Gaps = 5/70 (7%) Query 4 ILLSVIAEGGPGNTGPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFDRDHPE 63 ++ V+A+ P TGPDFGKASPVGL+V++LL++A FLV SMN+ L+++PKSFD+ Sbjct 11 LMAGVLAQDEPRQTGPDFGKASPVGLIVLLLLLVAVFFLVWSMNRHLRRLPKSFDK---- 66 Query 64 LDQAADEGTD 73 D AAD G D Sbjct 67 -DDAADGGVD 75 >gi|256374859|ref|YP_003098519.1| hypothetical protein Amir_0710 [Actinosynnema mirum DSM 43827] gi|255919162|gb|ACU34673.1| hypothetical protein Amir_0710 [Actinosynnema mirum DSM 43827] Length=119 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/45 (63%), Positives = 36/45 (80%), Gaps = 0/45 (0%) Query 14 PGNTGPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFD 58 PG DFGK+SPVGLL++VLL+ + LVRSMN++LKK+P SFD Sbjct 23 PGGQKEDFGKSSPVGLLMLVLLLASVFLLVRSMNKKLKKLPASFD 67 >gi|291298256|ref|YP_003509534.1| hypothetical protein Snas_0729 [Stackebrandtia nassauensis DSM 44728] gi|290567476|gb|ADD40441.1| hypothetical protein Snas_0729 [Stackebrandtia nassauensis DSM 44728] Length=71 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/71 (36%), Positives = 41/71 (58%), Gaps = 2/71 (2%) Query 5 LLSVIAEGGPGNTGPDFGK--ASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFDRDHP 62 ++ ++AE G N G G A P GL +IV+L I T+ L+R+MN+++K++P F R Sbjct 1 MIEILAEEGVNNFGDTRGGGLAGPTGLFIIVVLAIVTVLLIRNMNKRIKRLPAEFPRQDD 60 Query 63 ELDQAADEGTD 73 + + TD Sbjct 61 TAVNSEAKKTD 71 >gi|134097508|ref|YP_001103169.1| hypothetical protein SACE_0910 [Saccharopolyspora erythraea NRRL 2338] gi|291009351|ref|ZP_06567324.1| hypothetical protein SeryN2_32930 [Saccharopolyspora erythraea NRRL 2338] gi|133910131|emb|CAM00244.1| hypothetical protein SACE_0910 [Saccharopolyspora erythraea NRRL 2338] Length=112 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/41 (59%), Positives = 34/41 (83%), Gaps = 0/41 (0%) Query 20 DFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFDRD 60 DFGK+SP+GLL++VL IA +FL+RSM + LKK+P +FD + Sbjct 26 DFGKSSPLGLLLLVLFAIAVVFLIRSMTKHLKKLPTTFDEE 66 >gi|159036525|ref|YP_001535778.1| hypothetical protein Sare_0869 [Salinispora arenicola CNS-205] gi|157915360|gb|ABV96787.1| conserved hypothetical protein [Salinispora arenicola CNS-205] Length=93 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 35/50 (70%), Gaps = 1/50 (2%) Query 8 VIAEGGPGNTGPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSF 57 V+A+ GNT G A P+GL +I++L IAT+ L+R+MN +L+++P F Sbjct 7 VLAQNNFGNTRTG-GLAGPMGLFLILVLAIATVLLIRNMNARLRRLPDRF 55 >gi|340794903|ref|YP_004760366.1| hypothetical protein CVAR_1940 [Corynebacterium variabile DSM 44702] gi|340534813|gb|AEK37293.1| hypothetical protein CVAR_1940 [Corynebacterium variabile DSM 44702] Length=134 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/72 (41%), Positives = 40/72 (56%), Gaps = 11/72 (15%) Query 15 GNTGPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKS-----------FDRDHPE 63 G GPDFGKASPVGLLVIV L+ A L + N+++K + + FD + + Sbjct 27 GPEGPDFGKASPVGLLVIVALLAAILTIGVLFNRRMKAMTRRREYAEKHDMDPFDIEAVD 86 Query 64 LDQAADEGTDRD 75 AAD+G + D Sbjct 87 AAMAADQGLNDD 98 >gi|145593484|ref|YP_001157781.1| hypothetical protein Strop_0926 [Salinispora tropica CNB-440] gi|145302821|gb|ABP53403.1| hypothetical protein Strop_0926 [Salinispora tropica CNB-440] Length=96 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 35/50 (70%), Gaps = 1/50 (2%) Query 8 VIAEGGPGNTGPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSF 57 V+A+ GNT G A P+GL +I++L IAT+ L+R+MN +L+++P F Sbjct 7 VLAQNNFGNTRTG-GLAGPMGLFLILVLAIATVLLIRNMNARLRRLPAQF 55 >gi|258654536|ref|YP_003203692.1| hypothetical protein Namu_4416 [Nakamurella multipartita DSM 44233] gi|258557761|gb|ACV80703.1| hypothetical protein Namu_4416 [Nakamurella multipartita DSM 44233] Length=123 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 30/65 (47%), Positives = 47/65 (73%), Gaps = 7/65 (10%) Query 1 VNQILLSVIAEG-GPGN------TGPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKV 53 +N+++ +++ G PG+ GP++GKA+P+GLL+I+LL +A FL+RS +QLKKV Sbjct 1 MNRLVTTLMLAGPQPGDYDPSTGKGPEWGKAAPIGLLIILLLGVALYFLLRSFTRQLKKV 60 Query 54 PKSFD 58 P SFD Sbjct 61 PASFD 65 >gi|238062790|ref|ZP_04607499.1| hypothetical protein MCAG_03756 [Micromonospora sp. ATCC 39149] gi|237884601|gb|EEP73429.1| hypothetical protein MCAG_03756 [Micromonospora sp. ATCC 39149] Length=105 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 18/36 (50%), Positives = 27/36 (75%), Gaps = 0/36 (0%) Query 22 GKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSF 57 G A P+GL +IVLL AT+ L+R+MN +L+++P F Sbjct 20 GLAGPMGLFLIVLLATATVLLIRNMNSRLRRLPDHF 55 >gi|330465849|ref|YP_004403592.1| hypothetical protein VAB18032_09370 [Verrucosispora maris AB-18-032] gi|328808820|gb|AEB42992.1| hypothetical protein VAB18032_09370 [Verrucosispora maris AB-18-032] Length=97 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 22/58 (38%), Positives = 37/58 (64%), Gaps = 1/58 (1%) Query 6 LSVIAEGGPGNTGPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSFDRDHPE 63 + V+A+ G+T G A P+GL +I++L AT+ L+R+MN +L+++P F PE Sbjct 5 VQVLAQNNFGDTRTG-GLAGPMGLFLILVLGAATVLLIRNMNARLRRLPDEFPAQQPE 61 >gi|145295139|ref|YP_001137960.1| hypothetical protein cgR_1082 [Corynebacterium glutamicum R] gi|140845059|dbj|BAF54058.1| hypothetical protein [Corynebacterium glutamicum R] Length=106 Score = 43.1 bits (100), Expect = 0.015, Method: Compositional matrix adjust. Identities = 23/41 (57%), Positives = 31/41 (76%), Gaps = 2/41 (4%) Query 2 NQILLSVIAEGGPGNTGPDFGKASPVGLLVIVLLVIATLFL 42 N I+L+ +GGP GP+FGKASPVGLL+IV +++A L L Sbjct 19 NAIILAQQQQGGP--LGPEFGKASPVGLLLIVAMLVAILVL 57 >gi|19552214|ref|NP_600216.1| hypothetical protein NCgl0949 [Corynebacterium glutamicum ATCC 13032] gi|62389879|ref|YP_225281.1| hypothetical protein cg1128 [Corynebacterium glutamicum ATCC 13032] gi|21323756|dbj|BAB98382.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032] gi|41325215|emb|CAF19695.1| similar to ribosomal protein S2 [Corynebacterium glutamicum ATCC 13032] gi|344044411|gb|EGV40088.1| hypothetical protein CgS9114_09743 [Corynebacterium glutamicum S9114] Length=106 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 23/41 (57%), Positives = 31/41 (76%), Gaps = 2/41 (4%) Query 2 NQILLSVIAEGGPGNTGPDFGKASPVGLLVIVLLVIATLFL 42 N I+L+ +GGP GP+FGKASPVGLL+IV +++A L L Sbjct 19 NAIILAQQQQGGP--LGPEFGKASPVGLLLIVAMLVAILVL 57 >gi|255324386|ref|ZP_05365503.1| conserved hypothetical protein [Corynebacterium tuberculostearicum SK141] gi|311740760|ref|ZP_07714587.1| conserved hypothetical protein [Corynebacterium pseudogenitalium ATCC 33035] gi|255298292|gb|EET77592.1| conserved hypothetical protein [Corynebacterium tuberculostearicum SK141] gi|311304280|gb|EFQ80356.1| conserved hypothetical protein [Corynebacterium pseudogenitalium ATCC 33035] Length=103 Score = 42.7 bits (99), Expect = 0.019, Method: Compositional matrix adjust. Identities = 20/32 (63%), Positives = 26/32 (82%), Gaps = 2/32 (6%) Query 10 AEGGPGNTGPDFGKASPVGLLVIVLLVIATLF 41 AEGGP GP+FGKASP+GLL++ L+ +A LF Sbjct 24 AEGGP--MGPEFGKASPIGLLILALMGVAVLF 53 >gi|302865436|ref|YP_003834073.1| hypothetical protein Micau_0933 [Micromonospora aurantiaca ATCC 27029] gi|315501984|ref|YP_004080871.1| hypothetical protein ML5_1181 [Micromonospora sp. L5] gi|302568295|gb|ADL44497.1| hypothetical protein Micau_0933 [Micromonospora aurantiaca ATCC 27029] gi|315408603|gb|ADU06720.1| hypothetical protein ML5_1181 [Micromonospora sp. L5] Length=94 Score = 40.4 bits (93), Expect = 0.090, Method: Compositional matrix adjust. Identities = 20/52 (39%), Positives = 33/52 (64%), Gaps = 1/52 (1%) Query 6 LSVIAEGGPGNTGPDFGKASPVGLLVIVLLVIATLFLVRSMNQQLKKVPKSF 57 + V+A+ G+T G A P+GL +IV L T+ L+R+MN +L+++P F Sbjct 5 VEVLAQNNFGDTRTG-GLAGPMGLFLIVALATVTVLLIRNMNARLRRLPDRF 55 Lambda K H 0.315 0.139 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 130095868320 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40