BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1088

Length=144
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15840525|ref|NP_335562.1|  PE family protein [Mycobacterium tu...   285    2e-75
gi|31792280|ref|NP_854773.1|  PE family protein [Mycobacterium bo...   285    2e-75
gi|341601034|emb|CCC63706.1|  PE family protein [Mycobacterium bo...   283    9e-75
gi|308231730|ref|ZP_07663916.1|  putative PE family protein [Myco...   277    3e-73
gi|308378825|ref|ZP_07668831.1|  LOW QUALITY PROTEIN: PE family p...   199    1e-49
gi|240173448|ref|ZP_04752106.1|  PE-PGRS family protein [Mycobact...  85.1    3e-15
gi|340627405|ref|YP_004745857.1|  pe_pgrs 33 [Mycobacterium canet...  83.2    1e-14
gi|298525877|ref|ZP_07013286.1|  pe-pgrs family protein wag22a [M...  80.9    6e-14
gi|289750999|ref|ZP_06510377.1|  predicted protein [Mycobacterium...  80.5    7e-14
gi|289754501|ref|ZP_06513879.1|  PE-PGRS family protein [Mycobact...  80.5    8e-14
gi|340626105|ref|YP_004744557.1|  PE-PGRS family protein [Mycobac...  80.1    9e-14
gi|306804144|ref|ZP_07440812.1|  putative PE family protein [Myco...  80.1    1e-13
gi|289746174|ref|ZP_06505552.1|  PE-PGRS family protein [Mycobact...  79.7    1e-13
gi|308232121|ref|ZP_07414999.2|  hypothetical protein TMAG_02954 ...  79.7    1e-13
gi|308374569|ref|ZP_07436571.2|  putative PE family protein [Myco...  79.7    1e-13
gi|308373401|ref|ZP_07432174.2|  putative PE family protein [Myco...  79.7    1e-13
gi|289758522|ref|ZP_06517900.1|  conserved hypothetical protein [...  79.3    1e-13
gi|308375874|ref|ZP_07445383.2|  putative PE family protein [Myco...  79.3    2e-13
gi|289448038|ref|ZP_06437782.1|  PE-PGRS family protein [Mycobact...  79.3    2e-13
gi|308371000|ref|ZP_07423508.2|  hypothetical protein TMCG_00495 ...  79.3    2e-13
gi|308379191|ref|ZP_07485435.2|  putative PE family protein [Myco...  79.3    2e-13
gi|323719062|gb|EGB28210.1|  PE-PGRS family protein [Mycobacteriu...  79.3    2e-13
gi|307080479|ref|ZP_07489649.1|  putative PE family protein [Myco...  79.3    2e-13
gi|297731991|ref|ZP_06961109.1|  PE-PGRS family protein [Mycobact...  79.3    2e-13
gi|15841912|ref|NP_336949.1|  PE_PGRS family protein [Mycobacteri...  79.3    2e-13
gi|326904012|gb|EGE50945.1|  PE-PGRS family protein [Mycobacteriu...  79.3    2e-13
gi|167968722|ref|ZP_02550999.1|  PE-PGRS family protein [Mycobact...  79.3    2e-13
gi|313659326|ref|ZP_07816206.1|  PE-PGRS family protein [Mycobact...  79.3    2e-13
gi|224990770|ref|YP_002645457.1|  PE-PGRS family protein [Mycobac...  79.3    2e-13
gi|339295295|gb|AEJ47406.1|  hypothetical protein CCDC5079_2216 [...  79.0    2e-13
gi|148662229|ref|YP_001283752.1|  PE-PGRS family protein [Mycobac...  79.0    2e-13
gi|57116982|ref|YP_177878.1|  PE-PGRS family protein [Mycobacteri...  79.0    2e-13
gi|289761390|ref|ZP_06520768.1|  predicted protein [Mycobacterium...  79.0    2e-13
gi|289575089|ref|ZP_06455316.1|  PE-PGRS family protein [Mycobact...  79.0    2e-13
gi|341602314|emb|CCC64988.1|  PE-PGRS family protein [Mycobacteri...  79.0    2e-13
gi|31793574|ref|NP_856067.1|  PE-PGRS family protein [Mycobacteri...  79.0    2e-13
gi|339298914|gb|AEJ51024.1|  hypothetical protein CCDC5180_2187 [...  79.0    2e-13
gi|254551443|ref|ZP_05141890.1|  PE-PGRS family protein [Mycobact...  79.0    2e-13
gi|289446834|ref|ZP_06436578.1|  PE-PGRS family protein [Mycobact...  79.0    2e-13
gi|289753314|ref|ZP_06512692.1|  predicted protein [Mycobacterium...  78.6    3e-13
gi|289569248|ref|ZP_06449475.1|  predicted protein [Mycobacterium...  78.6    3e-13
gi|289744988|ref|ZP_06504366.1|  PE-PGRS family protein [Mycobact...  78.6    3e-13
gi|308371915|ref|ZP_07426649.2|  putative PE family protein [Myco...  78.6    3e-13
gi|298524745|ref|ZP_07012154.1|  predicted protein [Mycobacterium...  78.2    3e-13
gi|148822460|ref|YP_001287214.1|  PE-PGRS family protein [Mycobac...  78.2    3e-13
gi|308380021|ref|ZP_07488404.2|  putative PE family protein [Myco...  78.2    3e-13
gi|289749785|ref|ZP_06509163.1|  PE-PGRS family protein [Mycobact...  78.2    4e-13
gi|15840688|ref|NP_335725.1|  PE_PGRS family protein [Mycobacteri...  78.2    4e-13
gi|289757341|ref|ZP_06516719.1|  predicted protein [Mycobacterium...  78.2    4e-13
gi|254364143|ref|ZP_04980189.1|  PE-PGRS family protein [Mycobact...  78.2    4e-13


>gi|15840525|ref|NP_335562.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|148660874|ref|YP_001282397.1| PE family protein [Mycobacterium tuberculosis H37Ra]
 gi|167966603|ref|ZP_02548880.1| PE family protein [Mycobacterium tuberculosis H37Ra]
 11 more sequence titles
 
gi|254231369|ref|ZP_04924696.1| PE family protein [Mycobacterium tuberculosis C]
 gi|254550082|ref|ZP_05140529.1| PE family protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|289744829|ref|ZP_06504207.1| PE family protein [Mycobacterium tuberculosis 02_1987]
 gi|294992928|ref|ZP_06798619.1| PE family protein [Mycobacterium tuberculosis 210]
 gi|297633624|ref|ZP_06951404.1| PE family protein [Mycobacterium tuberculosis KZN 4207]
 gi|297730610|ref|ZP_06959728.1| PE family protein [Mycobacterium tuberculosis KZN R506]
 gi|313657938|ref|ZP_07814818.1| PE family protein [Mycobacterium tuberculosis KZN V2475]
 gi|13880701|gb|AAK45376.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|124600428|gb|EAY59438.1| PE family protein [Mycobacterium tuberculosis C]
 gi|148505026|gb|ABQ72835.1| PE family protein [Mycobacterium tuberculosis H37Ra]
 gi|289685357|gb|EFD52845.1| PE family protein [Mycobacterium tuberculosis 02_1987]
Length=150

 Score =  285 bits (729),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 144/144 (100%), Positives = 144/144 (100%), Gaps = 0/144 (0%)

Query  1    MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
            MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE
Sbjct  7    MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  66

Query  61   EYHALSAQVAAFQTLFVRTLTGGCGVFRRRRGRQCVTAAEHRAAGAGRRQRRRRSGDGQW  120
            EYHALSAQVAAFQTLFVRTLTGGCGVFRRRRGRQCVTAAEHRAAGAGRRQRRRRSGDGQW
Sbjct  67   EYHALSAQVAAFQTLFVRTLTGGCGVFRRRRGRQCVTAAEHRAAGAGRRQRRRRSGDGQW  126

Query  121  RLRQQRHFGCGGQPEFRQHSEHRR  144
            RLRQQRHFGCGGQPEFRQHSEHRR
Sbjct  127  RLRQQRHFGCGGQPEFRQHSEHRR  150


>gi|31792280|ref|NP_854773.1| PE family protein [Mycobacterium bovis AF2122/97]
 gi|57116823|ref|YP_177784.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 gi|121637018|ref|YP_977241.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 45 more sequence titles
 
gi|148822298|ref|YP_001287052.1| PE family protein [Mycobacterium tuberculosis F11]
 gi|224989491|ref|YP_002644178.1| PE family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253799875|ref|YP_003032876.1| PE family protein [Mycobacterium tuberculosis KZN 1435]
 gi|254363996|ref|ZP_04980042.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
 gi|289442516|ref|ZP_06432260.1| PE family protein [Mycobacterium tuberculosis T46]
 gi|289446676|ref|ZP_06436420.1| PE family protein [Mycobacterium tuberculosis CPHL_A]
 gi|289555128|ref|ZP_06444338.1| PE family protein [Mycobacterium tuberculosis KZN 605]
 gi|289569077|ref|ZP_06449304.1| PE family protein [Mycobacterium tuberculosis T17]
 gi|289573734|ref|ZP_06453961.1| PE family protein [Mycobacterium tuberculosis K85]
 gi|289749622|ref|ZP_06509000.1| PE family protein [Mycobacterium tuberculosis T92]
 gi|289753152|ref|ZP_06512530.1| PE family protein [Mycobacterium tuberculosis EAS054]
 gi|289757175|ref|ZP_06516553.1| PE family protein [Mycobacterium tuberculosis T85]
 gi|289761227|ref|ZP_06520605.1| PE family protein [Mycobacterium tuberculosis GM 1503]
 gi|298524584|ref|ZP_07011993.1| PE family protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308375352|ref|ZP_07668000.1| PE family protein [Mycobacterium tuberculosis SUMu007]
 gi|308376615|ref|ZP_07668310.1| PE family protein [Mycobacterium tuberculosis SUMu008]
 gi|308377617|ref|ZP_07668550.1| PE family protein [Mycobacterium tuberculosis SUMu009]
 gi|339631153|ref|YP_004722795.1| PE family protein [Mycobacterium africanum GM041182]
 gi|340626101|ref|YP_004744553.1| PE family protein [Mycobacterium canettii CIPT 140010059]
 gi|7478593|pir||F70895 probable PE protein - Mycobacterium tuberculosis (strain H37RV)
 gi|31617868|emb|CAD93978.1| PE FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
 gi|41353645|emb|CAE55356.1| PE FAMILY PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|121492665|emb|CAL71134.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|134149510|gb|EBA41555.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
 gi|148720825|gb|ABR05450.1| PE family protein [Mycobacterium tuberculosis F11]
 gi|224772604|dbj|BAH25410.1| PE family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253321378|gb|ACT25981.1| PE family protein [Mycobacterium tuberculosis KZN 1435]
 gi|289415435|gb|EFD12675.1| PE family protein [Mycobacterium tuberculosis T46]
 gi|289419634|gb|EFD16835.1| PE family protein [Mycobacterium tuberculosis CPHL_A]
 gi|289439760|gb|EFD22253.1| PE family protein [Mycobacterium tuberculosis KZN 605]
 gi|289538165|gb|EFD42743.1| PE family protein [Mycobacterium tuberculosis K85]
 gi|289542831|gb|EFD46479.1| PE family protein [Mycobacterium tuberculosis T17]
 gi|289690209|gb|EFD57638.1| PE family protein [Mycobacterium tuberculosis T92]
 gi|289693739|gb|EFD61168.1| PE family protein [Mycobacterium tuberculosis EAS054]
 gi|289708733|gb|EFD72749.1| PE family protein [Mycobacterium tuberculosis GM 1503]
 gi|289712739|gb|EFD76751.1| PE family protein [Mycobacterium tuberculosis T85]
 gi|298494378|gb|EFI29672.1| PE family protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308346599|gb|EFP35450.1| PE family protein [Mycobacterium tuberculosis SUMu007]
 gi|308350521|gb|EFP39372.1| PE family protein [Mycobacterium tuberculosis SUMu008]
 gi|308355169|gb|EFP44020.1| PE family protein [Mycobacterium tuberculosis SUMu009]
 gi|326904686|gb|EGE51619.1| PE family protein [Mycobacterium tuberculosis W-148]
 gi|328459620|gb|AEB05043.1| PE family protein [Mycobacterium tuberculosis KZN 4207]
 gi|339330509|emb|CCC26174.1| PE family protein [Mycobacterium africanum GM041182]
 gi|340004291|emb|CCC43432.1| PE family protein [Mycobacterium canettii CIPT 140010059]
 gi|344218916|gb|AEM99546.1| PE family protein [Mycobacterium tuberculosis CTRI-2]
Length=144

 Score =  285 bits (728),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 144/144 (100%), Positives = 144/144 (100%), Gaps = 0/144 (0%)

Query  1    MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
            MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE
Sbjct  1    MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60

Query  61   EYHALSAQVAAFQTLFVRTLTGGCGVFRRRRGRQCVTAAEHRAAGAGRRQRRRRSGDGQW  120
            EYHALSAQVAAFQTLFVRTLTGGCGVFRRRRGRQCVTAAEHRAAGAGRRQRRRRSGDGQW
Sbjct  61   EYHALSAQVAAFQTLFVRTLTGGCGVFRRRRGRQCVTAAEHRAAGAGRRQRRRRSGDGQW  120

Query  121  RLRQQRHFGCGGQPEFRQHSEHRR  144
            RLRQQRHFGCGGQPEFRQHSEHRR
Sbjct  121  RLRQQRHFGCGGQPEFRQHSEHRR  144


>gi|341601034|emb|CCC63706.1| PE family protein [Mycobacterium bovis BCG str. Moreau RDJ]
Length=144

 Score =  283 bits (723),  Expect = 9e-75, Method: Compositional matrix adjust.
 Identities = 143/144 (99%), Positives = 143/144 (99%), Gaps = 0/144 (0%)

Query  1    MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
            MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE
Sbjct  1    MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60

Query  61   EYHALSAQVAAFQTLFVRTLTGGCGVFRRRRGRQCVTAAEHRAAGAGRRQRRRRSGDGQW  120
            EYHALSA VAAFQTLFVRTLTGGCGVFRRRRGRQCVTAAEHRAAGAGRRQRRRRSGDGQW
Sbjct  61   EYHALSAHVAAFQTLFVRTLTGGCGVFRRRRGRQCVTAAEHRAAGAGRRQRRRRSGDGQW  120

Query  121  RLRQQRHFGCGGQPEFRQHSEHRR  144
            RLRQQRHFGCGGQPEFRQHSEHRR
Sbjct  121  RLRQQRHFGCGGQPEFRQHSEHRR  144


>gi|308231730|ref|ZP_07663916.1| putative PE family protein [Mycobacterium tuberculosis SUMu001]
 gi|308374201|ref|ZP_07667732.1| putative PE family protein [Mycobacterium tuberculosis SUMu006]
 gi|308216237|gb|EFO75636.1| putative PE family protein [Mycobacterium tuberculosis SUMu001]
 gi|308342722|gb|EFP31573.1| putative PE family protein [Mycobacterium tuberculosis SUMu006]
 gi|323720449|gb|EGB29537.1| PE family protein [Mycobacterium tuberculosis CDC1551A]
Length=141

 Score =  277 bits (709),  Expect = 3e-73, Method: Compositional matrix adjust.
 Identities = 141/141 (100%), Positives = 141/141 (100%), Gaps = 0/141 (0%)

Query  4    MIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAEEYH  63
            MIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAEEYH
Sbjct  1    MIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAEEYH  60

Query  64   ALSAQVAAFQTLFVRTLTGGCGVFRRRRGRQCVTAAEHRAAGAGRRQRRRRSGDGQWRLR  123
            ALSAQVAAFQTLFVRTLTGGCGVFRRRRGRQCVTAAEHRAAGAGRRQRRRRSGDGQWRLR
Sbjct  61   ALSAQVAAFQTLFVRTLTGGCGVFRRRRGRQCVTAAEHRAAGAGRRQRRRRSGDGQWRLR  120

Query  124  QQRHFGCGGQPEFRQHSEHRR  144
            QQRHFGCGGQPEFRQHSEHRR
Sbjct  121  QQRHFGCGGQPEFRQHSEHRR  141


>gi|308378825|ref|ZP_07668831.1| LOW QUALITY PROTEIN: PE family protein [Mycobacterium tuberculosis 
SUMu010]
 gi|308359123|gb|EFP47974.1| LOW QUALITY PROTEIN: PE family protein [Mycobacterium tuberculosis 
SUMu010]
Length=109

 Score =  199 bits (506),  Expect = 1e-49, Method: Compositional matrix adjust.
 Identities = 103/103 (100%), Positives = 103/103 (100%), Gaps = 0/103 (0%)

Query  1    MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
            MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE
Sbjct  7    MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  66

Query  61   EYHALSAQVAAFQTLFVRTLTGGCGVFRRRRGRQCVTAAEHRA  103
            EYHALSAQVAAFQTLFVRTLTGGCGVFRRRRGRQCVTAAEHRA
Sbjct  67   EYHALSAQVAAFQTLFVRTLTGGCGVFRRRRGRQCVTAAEHRA  109


>gi|240173448|ref|ZP_04752106.1| PE-PGRS family protein [Mycobacterium kansasii ATCC 12478]
Length=304

 Score = 85.1 bits (209),  Expect = 3e-15, Method: Compositional matrix adjust.
 Identities = 48/81 (60%), Positives = 58/81 (72%), Gaps = 0/81 (0%)

Query  1   MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
           MSY++  P  + AAATD+  IGSA+S A+A A A TT +LAAG DEV AAIA LF A+A+
Sbjct  1   MSYVVVAPEIVVAAATDLTNIGSALSEASAVAAAPTTAILAAGADEVSAAIAALFGAHAQ  60

Query  61  EYHALSAQVAAFQTLFVRTLT  81
            Y ALSAQ  AF T FV+ LT
Sbjct  61  VYQALSAQAEAFHTQFVQALT  81


>gi|340627405|ref|YP_004745857.1| pe_pgrs 33 [Mycobacterium canettii CIPT 140010059]
 gi|340005595|emb|CCC44759.1| pe_pgrs 33 [Mycobacterium canettii CIPT 140010059]
Length=506

 Score = 83.2 bits (204),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 53/88 (61%), Positives = 63/88 (72%), Gaps = 0/88 (0%)

Query  1   MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
           MS++IA+P AL A ATD+ GIGSA+S ANA A A TT +LAAG DEV  AI+ LF A+A+
Sbjct  1   MSFLIASPEALAATATDLTGIGSAISAANAVAAAPTTEILAAGTDEVSTAISALFGAHAQ  60

Query  61  EYHALSAQVAAFQTLFVRTLTGGCGVFR  88
            Y ALSA VAAF   FV TLT G G + 
Sbjct  61  AYQALSAHVAAFHDQFVHTLTAGAGSYM  88


>gi|298525877|ref|ZP_07013286.1| pe-pgrs family protein wag22a [Mycobacterium tuberculosis 94_M4241A]
 gi|298495671|gb|EFI30965.1| pe-pgrs family protein wag22a [Mycobacterium tuberculosis 94_M4241A]
Length=161

 Score = 80.9 bits (198),  Expect = 6e-14, Method: Compositional matrix adjust.
 Identities = 52/87 (60%), Positives = 62/87 (72%), Gaps = 0/87 (0%)

Query  1   MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
           MS++IA+P AL A AT + GIGSA+S ANA A A TT +LAAG DEV  AI+ LF A+A+
Sbjct  1   MSFLIASPEALAATATYLTGIGSAISAANAVAAAPTTEILAAGTDEVSTAISALFGAHAQ  60

Query  61  EYHALSAQVAAFQTLFVRTLTGGCGVF  87
            Y ALSA VAAF   FV TLT G G +
Sbjct  61  AYQALSAHVAAFHDQFVHTLTAGAGSY  87


>gi|289750999|ref|ZP_06510377.1| predicted protein [Mycobacterium tuberculosis T92]
 gi|289691586|gb|EFD59015.1| predicted protein [Mycobacterium tuberculosis T92]
Length=189

 Score = 80.5 bits (197),  Expect = 7e-14, Method: Compositional matrix adjust.
 Identities = 52/87 (60%), Positives = 62/87 (72%), Gaps = 0/87 (0%)

Query  1    MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
            MS++IA+P AL A AT + GIGSA+S ANA A A TT +LAAG DEV  AI+ LF A+A+
Sbjct  22   MSFLIASPEALAATATYLTGIGSAISAANAVAAAPTTEILAAGTDEVSTAISALFGAHAQ  81

Query  61   EYHALSAQVAAFQTLFVRTLTGGCGVF  87
             Y ALSA VAAF   FV TLT G G +
Sbjct  82   AYQALSAHVAAFHDQFVHTLTAGAGSY  108


>gi|289754501|ref|ZP_06513879.1| PE-PGRS family protein [Mycobacterium tuberculosis EAS054]
 gi|289695088|gb|EFD62517.1| PE-PGRS family protein [Mycobacterium tuberculosis EAS054]
Length=155

 Score = 80.5 bits (197),  Expect = 8e-14, Method: Compositional matrix adjust.
 Identities = 52/87 (60%), Positives = 62/87 (72%), Gaps = 0/87 (0%)

Query  1    MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
            MS++IA+P AL A AT + GIGSA+S ANA A A TT +LAAG DEV  AI+ LF A+A+
Sbjct  22   MSFLIASPEALAATATYLTGIGSAISAANAVAAAPTTEILAAGTDEVSTAISALFGAHAQ  81

Query  61   EYHALSAQVAAFQTLFVRTLTGGCGVF  87
             Y ALSA VAAF   FV TLT G G +
Sbjct  82   AYQALSAHVAAFHDQFVHTLTAGAGSY  108


>gi|340626105|ref|YP_004744557.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059]
 gi|340004295|emb|CCC43436.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059]
Length=856

 Score = 80.1 bits (196),  Expect = 9e-14, Method: Compositional matrix adjust.
 Identities = 44/78 (57%), Positives = 58/78 (75%), Gaps = 0/78 (0%)

Query  1   MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
           MS++IA P AL A A+D+ GIGSA++ ANAA +A TTG+LAAG DEV +AIA LF A+ +
Sbjct  1   MSFVIAAPEALVAVASDLAGIGSALAEANAAVLAPTTGLLAAGADEVSSAIAALFGAHGQ  60

Query  61  EYHALSAQVAAFQTLFVR  78
            Y  +SAQ +AF   FV+
Sbjct  61  AYQTVSAQASAFHAQFVQ  78


>gi|306804144|ref|ZP_07440812.1| putative PE family protein [Mycobacterium tuberculosis SUMu008]
 gi|308349288|gb|EFP38139.1| putative PE family protein [Mycobacterium tuberculosis SUMu008]
Length=140

 Score = 80.1 bits (196),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 52/87 (60%), Positives = 62/87 (72%), Gaps = 0/87 (0%)

Query  1   MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
           MS++IA+P AL A AT + GIGSA+S ANA A A TT +LAAG DEV  AI+ LF A+A+
Sbjct  1   MSFLIASPEALAATATYLTGIGSAISAANAVAAAPTTEILAAGTDEVSTAISALFGAHAQ  60

Query  61  EYHALSAQVAAFQTLFVRTLTGGCGVF  87
            Y ALSA VAAF   FV TLT G G +
Sbjct  61  AYQALSAHVAAFHDQFVHTLTAGAGSY  87


>gi|289746174|ref|ZP_06505552.1| PE-PGRS family protein [Mycobacterium tuberculosis 02_1987]
 gi|289686702|gb|EFD54190.1| PE-PGRS family protein [Mycobacterium tuberculosis 02_1987]
Length=140

 Score = 79.7 bits (195),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 52/87 (60%), Positives = 62/87 (72%), Gaps = 0/87 (0%)

Query  1    MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
            MS++IA+P AL A AT + GIGSA+S ANA A A TT +LAAG DEV  AI+ LF A+A+
Sbjct  22   MSFLIASPEALAATATYLTGIGSAISAANAVAAAPTTEILAAGTDEVSTAISALFGAHAQ  81

Query  61   EYHALSAQVAAFQTLFVRTLTGGCGVF  87
             Y ALSA VAAF   FV TLT G G +
Sbjct  82   AYQALSAHVAAFHDQFVHTLTAGAGSY  108


>gi|308232121|ref|ZP_07414999.2| hypothetical protein TMAG_02954 [Mycobacterium tuberculosis SUMu001]
 gi|308378003|ref|ZP_07481207.2| putative PE family protein [Mycobacterium tuberculosis SUMu009]
 gi|308214977|gb|EFO74376.1| hypothetical protein TMAG_02954 [Mycobacterium tuberculosis SUMu001]
 gi|308353908|gb|EFP42759.1| putative PE family protein [Mycobacterium tuberculosis SUMu009]
Length=162

 Score = 79.7 bits (195),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 52/87 (60%), Positives = 62/87 (72%), Gaps = 0/87 (0%)

Query  1    MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
            MS++IA+P AL A AT + GIGSA+S ANA A A TT +LAAG DEV  AI+ LF A+A+
Sbjct  22   MSFLIASPEALAATATYLTGIGSAISAANAVAAAPTTEILAAGTDEVSTAISALFGAHAQ  81

Query  61   EYHALSAQVAAFQTLFVRTLTGGCGVF  87
             Y ALSA VAAF   FV TLT G G +
Sbjct  82   AYQALSAHVAAFHDQFVHTLTAGAGSY  108


>gi|308374569|ref|ZP_07436571.2| putative PE family protein [Mycobacterium tuberculosis SUMu006]
 gi|308341492|gb|EFP30343.1| putative PE family protein [Mycobacterium tuberculosis SUMu006]
Length=153

 Score = 79.7 bits (195),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 52/87 (60%), Positives = 62/87 (72%), Gaps = 0/87 (0%)

Query  1    MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
            MS++IA+P AL A AT + GIGSA+S ANA A A TT +LAAG DEV  AI+ LF A+A+
Sbjct  22   MSFLIASPEALAATATYLTGIGSAISAANAVAAAPTTEILAAGTDEVSTAISALFGAHAQ  81

Query  61   EYHALSAQVAAFQTLFVRTLTGGCGVF  87
             Y ALSA VAAF   FV TLT G G +
Sbjct  82   AYQALSAHVAAFHDQFVHTLTAGAGSY  108


>gi|308373401|ref|ZP_07432174.2| putative PE family protein [Mycobacterium tuberculosis SUMu005]
 gi|308337810|gb|EFP26661.1| putative PE family protein [Mycobacterium tuberculosis SUMu005]
Length=156

 Score = 79.7 bits (195),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 52/87 (60%), Positives = 62/87 (72%), Gaps = 0/87 (0%)

Query  1    MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
            MS++IA+P AL A AT + GIGSA+S ANA A A TT +LAAG DEV  AI+ LF A+A+
Sbjct  22   MSFLIASPEALAATATYLTGIGSAISAANAVAAAPTTEILAAGTDEVSTAISALFGAHAQ  81

Query  61   EYHALSAQVAAFQTLFVRTLTGGCGVF  87
             Y ALSA VAAF   FV TLT G G +
Sbjct  82   AYQALSAHVAAFHDQFVHTLTAGAGSY  108


>gi|289758522|ref|ZP_06517900.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289714086|gb|EFD78098.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
Length=179

 Score = 79.3 bits (194),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 52/87 (60%), Positives = 62/87 (72%), Gaps = 0/87 (0%)

Query  1    MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
            MS++IA+P AL A AT + GIGSA+S ANA A A TT +LAAG DEV  AI+ LF A+A+
Sbjct  22   MSFLIASPEALAATATYLTGIGSAISAANAVAAAPTTEILAAGTDEVSTAISALFGAHAQ  81

Query  61   EYHALSAQVAAFQTLFVRTLTGGCGVF  87
             Y ALSA VAAF   FV TLT G G +
Sbjct  82   AYQALSAHVAAFHDQFVHTLTAGAGSY  108


>gi|308375874|ref|ZP_07445383.2| putative PE family protein [Mycobacterium tuberculosis SUMu007]
 gi|308344977|gb|EFP33828.1| putative PE family protein [Mycobacterium tuberculosis SUMu007]
Length=169

 Score = 79.3 bits (194),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 52/87 (60%), Positives = 62/87 (72%), Gaps = 0/87 (0%)

Query  1    MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
            MS++IA+P AL A AT + GIGSA+S ANA A A TT +LAAG DEV  AI+ LF A+A+
Sbjct  42   MSFLIASPEALAATATYLTGIGSAISAANAVAAAPTTEILAAGTDEVSTAISALFGAHAQ  101

Query  61   EYHALSAQVAAFQTLFVRTLTGGCGVF  87
             Y ALSA VAAF   FV TLT G G +
Sbjct  102  AYQALSAHVAAFHDQFVHTLTAGAGSY  128


>gi|289448038|ref|ZP_06437782.1| PE-PGRS family protein [Mycobacterium tuberculosis CPHL_A]
 gi|289420996|gb|EFD18197.1| PE-PGRS family protein [Mycobacterium tuberculosis CPHL_A]
Length=162

 Score = 79.3 bits (194),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 52/87 (60%), Positives = 62/87 (72%), Gaps = 0/87 (0%)

Query  1    MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
            MS++IA+P AL A AT + GIGSA+S ANA A A TT +LAAG DEV  AI+ LF A+A+
Sbjct  22   MSFLIASPEALAATATYLTGIGSAISAANAVAAAPTTEILAAGTDEVSTAISALFGAHAQ  81

Query  61   EYHALSAQVAAFQTLFVRTLTGGCGVF  87
             Y ALSA VAAF   FV TLT G G +
Sbjct  82   AYQALSAHVAAFHDQFVHTLTAGAGSY  108


>gi|308371000|ref|ZP_07423508.2| hypothetical protein TMCG_00495 [Mycobacterium tuberculosis SUMu003]
 gi|308372222|ref|ZP_07427869.2| putative PE family protein [Mycobacterium tuberculosis SUMu004]
 gi|308330167|gb|EFP19018.1| hypothetical protein TMCG_00495 [Mycobacterium tuberculosis SUMu003]
 gi|308333990|gb|EFP22841.1| putative PE family protein [Mycobacterium tuberculosis SUMu004]
Length=168

 Score = 79.3 bits (194),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 52/87 (60%), Positives = 62/87 (72%), Gaps = 0/87 (0%)

Query  1    MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
            MS++IA+P AL A AT + GIGSA+S ANA A A TT +LAAG DEV  AI+ LF A+A+
Sbjct  22   MSFLIASPEALAATATYLTGIGSAISAANAVAAAPTTEILAAGTDEVSTAISALFGAHAQ  81

Query  61   EYHALSAQVAAFQTLFVRTLTGGCGVF  87
             Y ALSA VAAF   FV TLT G G +
Sbjct  82   AYQALSAHVAAFHDQFVHTLTAGAGSY  108


>gi|308379191|ref|ZP_07485435.2| putative PE family protein [Mycobacterium tuberculosis SUMu010]
 gi|308357853|gb|EFP46704.1| putative PE family protein [Mycobacterium tuberculosis SUMu010]
Length=155

 Score = 79.3 bits (194),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 52/87 (60%), Positives = 62/87 (72%), Gaps = 0/87 (0%)

Query  1    MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
            MS++IA+P AL A AT + GIGSA+S ANA A A TT +LAAG DEV  AI+ LF A+A+
Sbjct  22   MSFLIASPEALAATATYLTGIGSAISAANAVAAAPTTEILAAGTDEVSTAISALFGAHAQ  81

Query  61   EYHALSAQVAAFQTLFVRTLTGGCGVF  87
             Y ALSA VAAF   FV TLT G G +
Sbjct  82   AYQALSAHVAAFHDQFVHTLTAGAGSY  108


>gi|323719062|gb|EGB28210.1| PE-PGRS family protein [Mycobacterium tuberculosis CDC1551A]
Length=136

 Score = 79.3 bits (194),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 52/88 (60%), Positives = 62/88 (71%), Gaps = 0/88 (0%)

Query  1   MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
           MS++IA+P AL A AT + GIGSA+S ANA A A TT +LAAG DEV  AI+ LF A+A+
Sbjct  1   MSFLIASPEALAATATYLTGIGSAISAANAVAAAPTTEILAAGTDEVSTAISALFGAHAQ  60

Query  61  EYHALSAQVAAFQTLFVRTLTGGCGVFR  88
            Y ALSA VAAF   FV TLT G G + 
Sbjct  61  AYQALSAHVAAFHDQFVHTLTAGAGSYM  88


>gi|307080479|ref|ZP_07489649.1| putative PE family protein [Mycobacterium tuberculosis SUMu011]
 gi|308361799|gb|EFP50650.1| putative PE family protein [Mycobacterium tuberculosis SUMu011]
Length=153

 Score = 79.3 bits (194),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 52/88 (60%), Positives = 62/88 (71%), Gaps = 0/88 (0%)

Query  1   MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
           MS++IA+P AL A AT + GIGSA+S ANA A A TT +LAAG DEV  AI+ LF A+A+
Sbjct  1   MSFLIASPEALAATATYLTGIGSAISAANAVAAAPTTEILAAGTDEVSTAISALFGAHAQ  60

Query  61  EYHALSAQVAAFQTLFVRTLTGGCGVFR  88
            Y ALSA VAAF   FV TLT G G + 
Sbjct  61  AYQALSAHVAAFHDQFVHTLTAGAGSYM  88


>gi|297731991|ref|ZP_06961109.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN R506]
Length=164

 Score = 79.3 bits (194),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 52/88 (60%), Positives = 62/88 (71%), Gaps = 0/88 (0%)

Query  1   MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
           MS++IA+P AL A AT + GIGSA+S ANA A A TT +LAAG DEV  AI+ LF A+A+
Sbjct  1   MSFLIASPEALAATATYLTGIGSAISAANAVAAAPTTEILAAGTDEVSTAISALFGAHAQ  60

Query  61  EYHALSAQVAAFQTLFVRTLTGGCGVFR  88
            Y ALSA VAAF   FV TLT G G + 
Sbjct  61  AYQALSAHVAAFHDQFVHTLTAGAGSYM  88


>gi|15841912|ref|NP_336949.1| PE_PGRS family protein [Mycobacterium tuberculosis CDC1551]
 gi|148823599|ref|YP_001288353.1| PE-PGRS family protein [Mycobacterium tuberculosis F11]
 gi|253798527|ref|YP_003031528.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 1435]
 6 more sequence titles
 
gi|289553815|ref|ZP_06443025.1| predicted protein [Mycobacterium tuberculosis KZN 605]
 gi|13882182|gb|AAK46763.1| PE_PGRS family protein [Mycobacterium tuberculosis CDC1551]
 gi|148722126|gb|ABR06751.1| PE-PGRS family protein [Mycobacterium tuberculosis F11]
 gi|253320030|gb|ACT24633.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 1435]
 gi|289438447|gb|EFD20940.1| predicted protein [Mycobacterium tuberculosis KZN 605]
 gi|328458295|gb|AEB03718.1| hypothetical protein TBSG_01589 [Mycobacterium tuberculosis KZN 
4207]
Length=382

 Score = 79.3 bits (194),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 52/87 (60%), Positives = 62/87 (72%), Gaps = 0/87 (0%)

Query  1    MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
            MS++IA+P AL A AT + GIGSA+S ANA A A TT +LAAG DEV  AI+ LF A+A+
Sbjct  22   MSFLIASPEALAATATYLTGIGSAISAANAVAAAPTTEILAAGTDEVSTAISALFGAHAQ  81

Query  61   EYHALSAQVAAFQTLFVRTLTGGCGVF  87
             Y ALSA VAAF   FV TLT G G +
Sbjct  82   AYQALSAHVAAFHDQFVHTLTAGAGSY  108


>gi|326904012|gb|EGE50945.1| PE-PGRS family protein [Mycobacterium tuberculosis W-148]
Length=361

 Score = 79.3 bits (194),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 52/88 (60%), Positives = 62/88 (71%), Gaps = 0/88 (0%)

Query  1   MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
           MS++IA+P AL A AT + GIGSA+S ANA A A TT +LAAG DEV  AI+ LF A+A+
Sbjct  1   MSFLIASPEALAATATYLTGIGSAISAANAVAAAPTTEILAAGTDEVSTAISALFGAHAQ  60

Query  61  EYHALSAQVAAFQTLFVRTLTGGCGVFR  88
            Y ALSA VAAF   FV TLT G G + 
Sbjct  61  AYQALSAHVAAFHDQFVHTLTAGAGSYM  88


>gi|167968722|ref|ZP_02550999.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Ra]
 gi|297634999|ref|ZP_06952779.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 4207]
Length=171

 Score = 79.3 bits (194),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 52/88 (60%), Positives = 62/88 (71%), Gaps = 0/88 (0%)

Query  1   MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
           MS++IA+P AL A AT + GIGSA+S ANA A A TT +LAAG DEV  AI+ LF A+A+
Sbjct  1   MSFLIASPEALAATATYLTGIGSAISAANAVAAAPTTEILAAGTDEVSTAISALFGAHAQ  60

Query  61  EYHALSAQVAAFQTLFVRTLTGGCGVFR  88
            Y ALSA VAAF   FV TLT G G + 
Sbjct  61  AYQALSAHVAAFHDQFVHTLTAGAGSYM  88


>gi|313659326|ref|ZP_07816206.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN V2475]
Length=163

 Score = 79.3 bits (194),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 52/88 (60%), Positives = 62/88 (71%), Gaps = 0/88 (0%)

Query  1   MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
           MS++IA+P AL A AT + GIGSA+S ANA A A TT +LAAG DEV  AI+ LF A+A+
Sbjct  1   MSFLIASPEALAATATYLTGIGSAISAANAVAAAPTTEILAAGTDEVSTAISALFGAHAQ  60

Query  61  EYHALSAQVAAFQTLFVRTLTGGCGVFR  88
            Y ALSA VAAF   FV TLT G G + 
Sbjct  61  AYQALSAHVAAFHDQFVHTLTAGAGSYM  88


>gi|224990770|ref|YP_002645457.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|224773883|dbj|BAH26689.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Tokyo 172]
Length=360

 Score = 79.3 bits (194),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 51/88 (58%), Positives = 62/88 (71%), Gaps = 0/88 (0%)

Query  1   MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
           MS++IA+P AL A AT + GIGSA++ ANA A A TT +LAAG DEV  AI+ LF A+A+
Sbjct  1   MSFLIASPEALAATATYLTGIGSAINAANAVAAAPTTEILAAGTDEVSTAISALFGAHAQ  60

Query  61  EYHALSAQVAAFQTLFVRTLTGGCGVFR  88
            Y ALSA VAAF   FV TLT G G + 
Sbjct  61  AYQALSAHVAAFHDQFVHTLTAGAGSYM  88


>gi|339295295|gb|AEJ47406.1| hypothetical protein CCDC5079_2216 [Mycobacterium tuberculosis 
CCDC5079]
Length=361

 Score = 79.0 bits (193),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 52/88 (60%), Positives = 62/88 (71%), Gaps = 0/88 (0%)

Query  1   MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
           MS++IA+P AL A AT + GIGSA+S ANA A A TT +LAAG DEV  AI+ LF A+A+
Sbjct  1   MSFLIASPEALAATATYLTGIGSAISAANAVAAAPTTEILAAGTDEVSTAISALFGAHAQ  60

Query  61  EYHALSAQVAAFQTLFVRTLTGGCGVFR  88
            Y ALSA VAAF   FV TLT G G + 
Sbjct  61  AYQALSAHVAAFHDQFVHTLTAGAGSYM  88


>gi|148662229|ref|YP_001283752.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Ra]
 gi|148506381|gb|ABQ74190.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Ra]
Length=361

 Score = 79.0 bits (193),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 52/88 (60%), Positives = 62/88 (71%), Gaps = 0/88 (0%)

Query  1   MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
           MS++IA+P AL A AT + GIGSA+S ANA A A TT +LAAG DEV  AI+ LF A+A+
Sbjct  1   MSFLIASPEALAATATYLTGIGSAISAANAVAAAPTTEILAAGTDEVSTAISALFGAHAQ  60

Query  61  EYHALSAQVAAFQTLFVRTLTGGCGVFR  88
            Y ALSA VAAF   FV TLT G G + 
Sbjct  61  AYQALSAHVAAFHDQFVHTLTAGAGSYM  88


>gi|57116982|ref|YP_177878.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Rv]
 gi|289443918|ref|ZP_06433662.1| PE-PGRS family protein [Mycobacterium tuberculosis T46]
 gi|294994496|ref|ZP_06800187.1| PE-PGRS family protein [Mycobacterium tuberculosis 210]
 6 more sequence titles
 
gi|339632422|ref|YP_004724064.1| PE-PGRS family protein [Mycobacterium africanum GM041182]
 gi|7476143|pir||G70682 hypothetical glycine-rich protein Rv2396 - Mycobacterium tuberculosis 
(strain H37RV)
 gi|41353696|emb|CAE55484.1| PE-PGRS FAMILY PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|289416837|gb|EFD14077.1| PE-PGRS family protein [Mycobacterium tuberculosis T46]
 gi|339331778|emb|CCC27480.1| PE-PGRS family protein [Mycobacterium africanum GM041182]
 gi|344220223|gb|AEN00854.1| PE-PGRS family protein [Mycobacterium tuberculosis CTRI-2]
Length=361

 Score = 79.0 bits (193),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 52/88 (60%), Positives = 62/88 (71%), Gaps = 0/88 (0%)

Query  1   MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
           MS++IA+P AL A AT + GIGSA+S ANA A A TT +LAAG DEV  AI+ LF A+A+
Sbjct  1   MSFLIASPEALAATATYLTGIGSAISAANAVAAAPTTEILAAGTDEVSTAISALFGAHAQ  60

Query  61  EYHALSAQVAAFQTLFVRTLTGGCGVFR  88
            Y ALSA VAAF   FV TLT G G + 
Sbjct  61  AYQALSAHVAAFHDQFVHTLTAGAGSYM  88


>gi|289761390|ref|ZP_06520768.1| predicted protein [Mycobacterium tuberculosis GM 1503]
 gi|289708896|gb|EFD72912.1| predicted protein [Mycobacterium tuberculosis GM 1503]
Length=305

 Score = 79.0 bits (193),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 49/78 (63%), Positives = 57/78 (74%), Gaps = 0/78 (0%)

Query  1    MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
            M Y+IA    L AAA D++GIGSA++ AN AA A TTG+LAAG DEV AAIA LF+ NA+
Sbjct  25   MEYLIAAQDVLVAAAADLEGIGSALAAANRAAEAPTTGLLAAGADEVSAAIASLFSGNAQ  84

Query  61   EYHALSAQVAAFQTLFVR  78
             Y ALSAQ AAF   FVR
Sbjct  85   AYQALSAQAAAFHQQFVR  102


>gi|289575089|ref|ZP_06455316.1| PE-PGRS family protein [Mycobacterium tuberculosis K85]
 gi|289539520|gb|EFD44098.1| PE-PGRS family protein [Mycobacterium tuberculosis K85]
Length=361

 Score = 79.0 bits (193),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 52/88 (60%), Positives = 62/88 (71%), Gaps = 0/88 (0%)

Query  1   MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
           MS++IA+P AL A AT + GIGSA+S ANA A A TT +LAAG DEV  AI+ LF A+A+
Sbjct  1   MSFLIASPEALAATATYLTGIGSAISAANAVAAAPTTEILAAGTDEVSTAISALFGAHAQ  60

Query  61  EYHALSAQVAAFQTLFVRTLTGGCGVFR  88
            Y ALSA VAAF   FV TLT G G + 
Sbjct  61  AYQALSAHVAAFHDQFVHTLTAGAGSYM  88


>gi|341602314|emb|CCC64988.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Moreau RDJ]
Length=360

 Score = 79.0 bits (193),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 51/88 (58%), Positives = 62/88 (71%), Gaps = 0/88 (0%)

Query  1   MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
           MS++IA+P AL A AT + GIGSA++ ANA A A TT +LAAG DEV  AI+ LF A+A+
Sbjct  1   MSFLIASPEALAATATYLTGIGSAINAANAVAAAPTTEILAAGTDEVSTAISALFGAHAQ  60

Query  61  EYHALSAQVAAFQTLFVRTLTGGCGVFR  88
            Y ALSA VAAF   FV TLT G G + 
Sbjct  61  AYQALSAHVAAFHDQFVHTLTAGAGSYM  88


>gi|31793574|ref|NP_856067.1| PE-PGRS family protein [Mycobacterium bovis AF2122/97]
 gi|121638276|ref|YP_978500.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|31619167|emb|CAD97279.1| PE-PGRS FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121493924|emb|CAL72399.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Pasteur 
1173P2]
Length=360

 Score = 79.0 bits (193),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 51/88 (58%), Positives = 62/88 (71%), Gaps = 0/88 (0%)

Query  1   MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
           MS++IA+P AL A AT + GIGSA++ ANA A A TT +LAAG DEV  AI+ LF A+A+
Sbjct  1   MSFLIASPEALAATATYLTGIGSAINAANAVAAAPTTEILAAGTDEVSTAISALFGAHAQ  60

Query  61  EYHALSAQVAAFQTLFVRTLTGGCGVFR  88
            Y ALSA VAAF   FV TLT G G + 
Sbjct  61  AYQALSAHVAAFHDQFVHTLTAGAGSYM  88


>gi|339298914|gb|AEJ51024.1| hypothetical protein CCDC5180_2187 [Mycobacterium tuberculosis 
CCDC5180]
Length=361

 Score = 79.0 bits (193),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 52/88 (60%), Positives = 62/88 (71%), Gaps = 0/88 (0%)

Query  1   MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
           MS++IA+P AL A AT + GIGSA+S ANA A A TT +LAAG DEV  AI+ LF A+A+
Sbjct  1   MSFLIASPEALAATATYLTGIGSAISAANAVAAAPTTEILAAGTDEVSTAISALFGAHAQ  60

Query  61  EYHALSAQVAAFQTLFVRTLTGGCGVFR  88
            Y ALSA VAAF   FV TLT G G + 
Sbjct  61  AYQALSAHVAAFHDQFVHTLTAGAGSYM  88


>gi|254551443|ref|ZP_05141890.1| PE-PGRS family protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
Length=361

 Score = 79.0 bits (193),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 52/88 (60%), Positives = 62/88 (71%), Gaps = 0/88 (0%)

Query  1   MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
           MS++IA+P AL A AT + GIGSA+S ANA A A TT +LAAG DEV  AI+ LF A+A+
Sbjct  1   MSFLIASPEALAATATYLTGIGSAISAANAVAAAPTTEILAAGTDEVSTAISALFGAHAQ  60

Query  61  EYHALSAQVAAFQTLFVRTLTGGCGVFR  88
            Y ALSA VAAF   FV TLT G G + 
Sbjct  61  AYQALSAHVAAFHDQFVHTLTAGAGSYM  88


>gi|289446834|ref|ZP_06436578.1| PE-PGRS family protein [Mycobacterium tuberculosis CPHL_A]
 gi|289419792|gb|EFD16993.1| PE-PGRS family protein [Mycobacterium tuberculosis CPHL_A]
Length=416

 Score = 79.0 bits (193),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 49/78 (63%), Positives = 57/78 (74%), Gaps = 0/78 (0%)

Query  1    MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
            M Y+IA    L AAA D++GIGSA++ AN AA A TTG+LAAG DEV AAIA LF+ NA+
Sbjct  25   MEYLIAAQDVLVAAAADLEGIGSALAAANRAAEAPTTGLLAAGADEVSAAIASLFSGNAQ  84

Query  61   EYHALSAQVAAFQTLFVR  78
             Y ALSAQ AAF   FVR
Sbjct  85   AYQALSAQAAAFHQQFVR  102


>gi|289753314|ref|ZP_06512692.1| predicted protein [Mycobacterium tuberculosis EAS054]
 gi|289693901|gb|EFD61330.1| predicted protein [Mycobacterium tuberculosis EAS054]
Length=266

 Score = 78.6 bits (192),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 49/78 (63%), Positives = 57/78 (74%), Gaps = 0/78 (0%)

Query  1    MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
            M Y+IA    L AAA D++GIGSA++ AN AA A TTG+LAAG DEV AAIA LF+ NA+
Sbjct  25   MEYLIAAQDVLVAAAADLEGIGSALAAANRAAEAPTTGLLAAGADEVSAAIASLFSGNAQ  84

Query  61   EYHALSAQVAAFQTLFVR  78
             Y ALSAQ AAF   FVR
Sbjct  85   AYQALSAQAAAFHQQFVR  102


>gi|289569248|ref|ZP_06449475.1| predicted protein [Mycobacterium tuberculosis T17]
 gi|289543002|gb|EFD46650.1| predicted protein [Mycobacterium tuberculosis T17]
Length=437

 Score = 78.6 bits (192),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 49/78 (63%), Positives = 57/78 (74%), Gaps = 0/78 (0%)

Query  1    MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
            M Y+IA    L AAA D++GIGSA++ AN AA A TTG+LAAG DEV AAIA LF+ NA+
Sbjct  99   MEYLIAAQDVLVAAAADLEGIGSALAAANRAAEAPTTGLLAAGADEVSAAIASLFSGNAQ  158

Query  61   EYHALSAQVAAFQTLFVR  78
             Y ALSAQ AAF   FVR
Sbjct  159  AYQALSAQAAAFHQQFVR  176


>gi|289744988|ref|ZP_06504366.1| PE-PGRS family protein [Mycobacterium tuberculosis 02_1987]
 gi|289685516|gb|EFD53004.1| PE-PGRS family protein [Mycobacterium tuberculosis 02_1987]
Length=551

 Score = 78.6 bits (192),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 49/78 (63%), Positives = 57/78 (74%), Gaps = 0/78 (0%)

Query  1    MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
            M Y+IA    L AAA D++GIGSA++ AN AA A TTG+LAAG DEV AAIA LF+ NA+
Sbjct  25   MEYLIAAQDVLVAAAADLEGIGSALAAANRAAEAPTTGLLAAGADEVSAAIASLFSGNAQ  84

Query  61   EYHALSAQVAAFQTLFVR  78
             Y ALSAQ AAF   FVR
Sbjct  85   AYQALSAQAAAFHQQFVR  102


>gi|308371915|ref|ZP_07426649.2| putative PE family protein [Mycobacterium tuberculosis SUMu004]
 gi|308335014|gb|EFP23865.1| putative PE family protein [Mycobacterium tuberculosis SUMu004]
Length=222

 Score = 78.6 bits (192),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 49/78 (63%), Positives = 57/78 (74%), Gaps = 0/78 (0%)

Query  1    MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
            M Y+IA    L AAA D++GIGSA++ AN AA A TTG+LAAG DEV AAIA LF+ NA+
Sbjct  25   MEYLIAAQDVLVAAAADLEGIGSALAAANRAAEAPTTGLLAAGADEVSAAIASLFSGNAQ  84

Query  61   EYHALSAQVAAFQTLFVR  78
             Y ALSAQ AAF   FVR
Sbjct  85   AYQALSAQAAAFHQQFVR  102


>gi|298524745|ref|ZP_07012154.1| predicted protein [Mycobacterium tuberculosis 94_M4241A]
 gi|298494539|gb|EFI29833.1| predicted protein [Mycobacterium tuberculosis 94_M4241A]
Length=227

 Score = 78.2 bits (191),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 49/78 (63%), Positives = 57/78 (74%), Gaps = 0/78 (0%)

Query  1    MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
            M Y+IA    L AAA D++GIGSA++ AN AA A TTG+LAAG DEV AAIA LF+ NA+
Sbjct  25   MEYLIAAQDVLVAAAADLEGIGSALAAANRAAEAPTTGLLAAGADEVSAAIASLFSGNAQ  84

Query  61   EYHALSAQVAAFQTLFVR  78
             Y ALSAQ AAF   FVR
Sbjct  85   AYQALSAQAAAFHQQFVR  102


>gi|148822460|ref|YP_001287214.1| PE-PGRS family protein [Mycobacterium tuberculosis F11]
 gi|148720987|gb|ABR05612.1| PE-PGRS family protein [Mycobacterium tuberculosis F11]
Length=414

 Score = 78.2 bits (191),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 49/78 (63%), Positives = 57/78 (74%), Gaps = 0/78 (0%)

Query  1    MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
            M Y+IA    L AAA D++GIGSA++ AN AA A TTG+LAAG DEV AAIA LF+ NA+
Sbjct  25   MEYLIAAQDVLVAAAADLEGIGSALAAANRAAEAPTTGLLAAGADEVSAAIASLFSGNAQ  84

Query  61   EYHALSAQVAAFQTLFVR  78
             Y ALSAQ AAF   FVR
Sbjct  85   AYQALSAQAAAFHQQFVR  102


>gi|308380021|ref|ZP_07488404.2| putative PE family protein [Mycobacterium tuberculosis SUMu011]
 gi|308362854|gb|EFP51705.1| putative PE family protein [Mycobacterium tuberculosis SUMu011]
Length=246

 Score = 78.2 bits (191),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 49/78 (63%), Positives = 57/78 (74%), Gaps = 0/78 (0%)

Query  1    MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
            M Y+IA    L AAA D++GIGSA++ AN AA A TTG+LAAG DEV AAIA LF+ NA+
Sbjct  25   MEYLIAAQDVLVAAAADLEGIGSALAAANRAAEAPTTGLLAAGADEVSAAIASLFSGNAQ  84

Query  61   EYHALSAQVAAFQTLFVR  78
             Y ALSAQ AAF   FVR
Sbjct  85   AYQALSAQAAAFHQQFVR  102


>gi|289749785|ref|ZP_06509163.1| PE-PGRS family protein [Mycobacterium tuberculosis T92]
 gi|289690372|gb|EFD57801.1| PE-PGRS family protein [Mycobacterium tuberculosis T92]
Length=140

 Score = 78.2 bits (191),  Expect = 4e-13, Method: Compositional matrix adjust.
 Identities = 49/78 (63%), Positives = 57/78 (74%), Gaps = 0/78 (0%)

Query  1    MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
            M Y+IA    L AAA D++GIGSA++ AN AA A TTG+LAAG DEV AAIA LF+ NA+
Sbjct  25   MEYLIAAQDVLVAAAADLEGIGSALAAANRAAEAPTTGLLAAGADEVSAAIASLFSGNAQ  84

Query  61   EYHALSAQVAAFQTLFVR  78
             Y ALSAQ AAF   FVR
Sbjct  85   AYQALSAQAAAFHQQFVR  102


>gi|15840688|ref|NP_335725.1| PE_PGRS family protein [Mycobacterium tuberculosis CDC1551]
 gi|253799712|ref|YP_003032713.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 1435]
 gi|289554968|ref|ZP_06444178.1| predicted protein [Mycobacterium tuberculosis KZN 605]
 gi|13880875|gb|AAK45539.1| PE_PGRS family protein [Mycobacterium tuberculosis CDC1551]
 gi|253321215|gb|ACT25818.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 1435]
 gi|289439600|gb|EFD22093.1| predicted protein [Mycobacterium tuberculosis KZN 605]
 gi|328459458|gb|AEB04881.1| hypothetical protein TBSG_02752 [Mycobacterium tuberculosis KZN 
4207]
Length=586

 Score = 78.2 bits (191),  Expect = 4e-13, Method: Compositional matrix adjust.
 Identities = 49/78 (63%), Positives = 57/78 (74%), Gaps = 0/78 (0%)

Query  1    MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
            M Y+IA    L AAA D++GIGSA++ AN AA A TTG+LAAG DEV AAIA LF+ NA+
Sbjct  25   MEYLIAAQDVLVAAAADLEGIGSALAAANRAAEAPTTGLLAAGADEVSAAIASLFSGNAQ  84

Query  61   EYHALSAQVAAFQTLFVR  78
             Y ALSAQ AAF   FVR
Sbjct  85   AYQALSAQAAAFHQQFVR  102


>gi|289757341|ref|ZP_06516719.1| predicted protein [Mycobacterium tuberculosis T85]
 gi|289712905|gb|EFD76917.1| predicted protein [Mycobacterium tuberculosis T85]
Length=362

 Score = 78.2 bits (191),  Expect = 4e-13, Method: Compositional matrix adjust.
 Identities = 49/78 (63%), Positives = 57/78 (74%), Gaps = 0/78 (0%)

Query  1    MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
            M Y+IA    L AAA D++GIGSA++ AN AA A TTG+LAAG DEV AAIA LF+ NA+
Sbjct  25   MEYLIAAQDVLVAAAADLEGIGSALAAANRAAEAPTTGLLAAGADEVSAAIASLFSGNAQ  84

Query  61   EYHALSAQVAAFQTLFVR  78
             Y ALSAQ AAF   FVR
Sbjct  85   AYQALSAQAAAFHQQFVR  102


>gi|254364143|ref|ZP_04980189.1| PE-PGRS family protein [Mycobacterium tuberculosis str. Haarlem]
 gi|134149657|gb|EBA41702.1| PE-PGRS family protein [Mycobacterium tuberculosis str. Haarlem]
Length=597

 Score = 78.2 bits (191),  Expect = 4e-13, Method: Compositional matrix adjust.
 Identities = 49/78 (63%), Positives = 57/78 (74%), Gaps = 0/78 (0%)

Query  1    MSYMIATPAALTAAATDIDGIGSAVSVANAAAVAATTGVLAAGGDEVLAAIARLFNANAE  60
            M Y+IA    L AAA D++GIGSA++ AN AA A TTG+LAAG DEV AAIA LF+ NA+
Sbjct  25   MEYLIAAQDVLVAAAADLEGIGSALAAANRAAEAPTTGLLAAGADEVSAAIASLFSGNAQ  84

Query  61   EYHALSAQVAAFQTLFVR  78
             Y ALSAQ AAF   FVR
Sbjct  85   AYQALSAQAAAFHQQFVR  102



Lambda     K      H
   0.323    0.131    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128702269584


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40