BLAST Search Results


BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1089

Length=120
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|57116824|ref|YP_177785.1|  PE family protein [Mycobacterium tu...   229    1e-58
gi|289442517|ref|ZP_06432261.1|  LOW QUALITY PROTEIN: PE family p...   226    7e-58
gi|31792281|ref|NP_854774.1|  PE family protein [Mycobacterium bo...   192    9e-48
gi|121637019|ref|YP_977242.1|  PE family protein [Mycobacterium b...   191    4e-47
gi|339631154|ref|YP_004722796.1|  PE family protein [Mycobacteriu...   190    6e-47
gi|294992929|ref|ZP_06798620.1|  PE family protein [Mycobacterium...   178    3e-43
gi|289761228|ref|ZP_06520606.1|  pe family protein [Mycobacterium...   173    1e-41
gi|289569078|ref|ZP_06449305.1|  PE family protein [Mycobacterium...   132    3e-29
gi|15840526|ref|NP_335563.1|  PE family protein [Mycobacterium tu...   111    3e-23
gi|289744830|ref|ZP_06504208.1|  PE family protein [Mycobacterium...  80.5    8e-14
gi|118616768|ref|YP_905100.1|  PE-PGRS family protein [Mycobacter...  39.7    0.14 
gi|183984251|ref|YP_001852542.1|  PE-PGRS family protein [Mycobac...  39.7    0.15 
gi|240169119|ref|ZP_04747778.1|  glycoside hydrolase family prote...  37.7    0.61 
gi|118617892|ref|YP_906224.1|  PE family protein [Mycobacterium u...  36.2    1.8  
gi|15843203|ref|NP_338240.1|  PE_PGRS family protein [Mycobacteri...  36.2    1.8  
gi|339300010|gb|AEJ52120.1|  PE-PGRS family protein [Mycobacteriu...  36.2    1.9  
gi|294993710|ref|ZP_06799401.1|  PE-PGRS family protein [Mycobact...  36.2    1.9  
gi|339633589|ref|YP_004725231.1|  PE-PGRS family protein [Mycobac...  35.8    1.9  
gi|240172383|ref|ZP_04751042.1|  PE-PGRS family protein [Mycobact...  35.8    2.0  
gi|240173200|ref|ZP_04751858.1|  PE-PGRS family protein [Mycobact...  35.8    2.1  
gi|254552700|ref|ZP_05143147.1|  PE-PGRS family protein [Mycobact...  35.8    2.4  
gi|289445184|ref|ZP_06434928.1|  PE-PGRS family protein [Mycobact...  35.4    2.9  
gi|183982606|ref|YP_001850897.1|  PE-PGRS family protein [Mycobac...  35.0    3.9  
gi|240171454|ref|ZP_04750113.1|  PE-PGRS family protein [Mycobact...  35.0    3.9  
gi|330467596|ref|YP_004405339.1|  cellulose-binding family II pro...  35.0    3.9  
gi|183984157|ref|YP_001852448.1|  PE-PGRS family protein [Mycobac...  34.7    4.8  
gi|183982972|ref|YP_001851263.1|  PE-PGRS family protein [Mycobac...  33.9    8.4  


>gi|57116824|ref|YP_177785.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 gi|289446677|ref|ZP_06436421.1| LOW QUALITY PROTEIN: PE family protein [Mycobacterium tuberculosis 
CPHL_A]
 gi|308370611|ref|ZP_07666979.1| LOW QUALITY PROTEIN: hypothetical protein TMCG_00711 [Mycobacterium 
tuberculosis SUMu003]
 6 more sequence titles
 gi|340626102|ref|YP_004744554.1| PE family protein [Mycobacterium canettii CIPT 140010059]
 gi|7478599|pir||G70895 probable PE protein - Mycobacterium tuberculosis (strain H37RV)
 gi|41353646|emb|CAE55357.1| PE FAMILY PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|289419635|gb|EFD16836.1| LOW QUALITY PROTEIN: PE family protein [Mycobacterium tuberculosis 
CPHL_A]
 gi|308331428|gb|EFP20279.1| LOW QUALITY PROTEIN: hypothetical protein TMCG_00711 [Mycobacterium 
tuberculosis SUMu003]
 gi|340004292|emb|CCC43433.1| PE family protein [Mycobacterium canettii CIPT 140010059]
Length=120

 Score =  229 bits (584),  Expect = 1e-58, Method: Compositional matrix adjust.
 Identities = 120/120 (100%), Positives = 120/120 (100%), Gaps = 0/120 (0%)

Query  1    SFAGAEAANASQLQSIARQVRGAVNAVAGQVTGNGGSGNSGTSAAAANPNSDNTASIADR  60
            SFAGAEAANASQLQSIARQVRGAVNAVAGQVTGNGGSGNSGTSAAAANPNSDNTASIADR
Sbjct  1    SFAGAEAANASQLQSIARQVRGAVNAVAGQVTGNGGSGNSGTSAAAANPNSDNTASIADR  60

Query  61   GTSAIMTTASATASSTGVDGGIAATYAVASQWDGGYVANYTITQFGRDFDDRLAVAIHFA  120
            GTSAIMTTASATASSTGVDGGIAATYAVASQWDGGYVANYTITQFGRDFDDRLAVAIHFA
Sbjct  61   GTSAIMTTASATASSTGVDGGIAATYAVASQWDGGYVANYTITQFGRDFDDRLAVAIHFA  120


>gi|289442517|ref|ZP_06432261.1| LOW QUALITY PROTEIN: PE family protein [Mycobacterium tuberculosis 
T46]
 gi|289415436|gb|EFD12676.1| LOW QUALITY PROTEIN: PE family protein [Mycobacterium tuberculosis 
T46]
Length=120

 Score =  226 bits (577),  Expect = 7e-58, Method: Compositional matrix adjust.
 Identities = 119/120 (99%), Positives = 119/120 (99%), Gaps = 0/120 (0%)

Query  1    SFAGAEAANASQLQSIARQVRGAVNAVAGQVTGNGGSGNSGTSAAAANPNSDNTASIADR  60
            SFAGAEAANASQLQSIARQVRGAVNAVAGQVTGNGGSGNSGTSAAAANPNSDNTASIADR
Sbjct  1    SFAGAEAANASQLQSIARQVRGAVNAVAGQVTGNGGSGNSGTSAAAANPNSDNTASIADR  60

Query  61   GTSAIMTTASATASSTGVDGGIAATYAVASQWDGGYVANYTITQFGRDFDDRLAVAIHFA  120
            GTSAIMTTASATASSTGVDGGIAATYAVASQWD GYVANYTITQFGRDFDDRLAVAIHFA
Sbjct  61   GTSAIMTTASATASSTGVDGGIAATYAVASQWDDGYVANYTITQFGRDFDDRLAVAIHFA  120


>gi|31792281|ref|NP_854774.1| PE family protein [Mycobacterium bovis AF2122/97]
 gi|148822299|ref|YP_001287053.1| PE family protein [Mycobacterium tuberculosis F11]
 gi|167966602|ref|ZP_02548879.1| pe family protein [Mycobacterium tuberculosis H37Ra]
 28 more sequence titles
 gi|253799874|ref|YP_003032875.1| PE family protein [Mycobacterium tuberculosis KZN 1435]
 gi|254363997|ref|ZP_04980043.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
 gi|289555127|ref|ZP_06444337.1| PE family protein [Mycobacterium tuberculosis KZN 605]
 gi|289753153|ref|ZP_06512531.1| PE family protein [Mycobacterium tuberculosis EAS054]
 gi|308371858|ref|ZP_07667254.1| PE family protein [Mycobacterium tuberculosis SUMu004]
 gi|308373031|ref|ZP_07667495.1| PE family protein [Mycobacterium tuberculosis SUMu005]
 gi|308375353|ref|ZP_07668001.1| PE family protein [Mycobacterium tuberculosis SUMu007]
 gi|308376616|ref|ZP_07668311.1| PE family protein [Mycobacterium tuberculosis SUMu008]
 gi|308377618|ref|ZP_07668551.1| PE family protein [Mycobacterium tuberculosis SUMu009]
 gi|308378826|ref|ZP_07668832.1| PE family protein [Mycobacterium tuberculosis SUMu010]
 gi|308379967|ref|ZP_07669081.1| PE family protein [Mycobacterium tuberculosis SUMu011]
 gi|308398602|ref|ZP_07669383.1| PE family protein [Mycobacterium tuberculosis SUMu012]
 gi|31617869|emb|CAD93979.1| PE FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
 gi|134149511|gb|EBA41556.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
 gi|148720826|gb|ABR05451.1| PE family protein [Mycobacterium tuberculosis F11]
 gi|253321377|gb|ACT25980.1| PE family protein [Mycobacterium tuberculosis KZN 1435]
 gi|289439759|gb|EFD22252.1| PE family protein [Mycobacterium tuberculosis KZN 605]
 gi|289693740|gb|EFD61169.1| PE family protein [Mycobacterium tuberculosis EAS054]
 gi|308335240|gb|EFP24091.1| PE family protein [Mycobacterium tuberculosis SUMu004]
 gi|308339044|gb|EFP27895.1| PE family protein [Mycobacterium tuberculosis SUMu005]
 gi|308346600|gb|EFP35451.1| PE family protein [Mycobacterium tuberculosis SUMu007]
 gi|308350522|gb|EFP39373.1| PE family protein [Mycobacterium tuberculosis SUMu008]
 gi|308355170|gb|EFP44021.1| PE family protein [Mycobacterium tuberculosis SUMu009]
 gi|308359124|gb|EFP47975.1| PE family protein [Mycobacterium tuberculosis SUMu010]
 gi|308363042|gb|EFP51893.1| PE family protein [Mycobacterium tuberculosis SUMu011]
 gi|308366692|gb|EFP55543.1| PE family protein [Mycobacterium tuberculosis SUMu012]
 gi|328459619|gb|AEB05042.1| PE family protein [Mycobacterium tuberculosis KZN 4207]
 gi|344218917|gb|AEM99547.1| PE family protein [Mycobacterium tuberculosis CTRI-2]
Length=101

 Score =  192 bits (489),  Expect = 9e-48, Method: Compositional matrix adjust.
 Identities = 100/101 (99%), Positives = 101/101 (100%), Gaps = 0/101 (0%)

Query  20   VRGAVNAVAGQVTGNGGSGNSGTSAAAANPNSDNTASIADRGTSAIMTTASATASSTGVD  79
            +RGAVNAVAGQVTGNGGSGNSGTSAAAANPNSDNTASIADRGTSAIMTTASATASSTGVD
Sbjct  1    MRGAVNAVAGQVTGNGGSGNSGTSAAAANPNSDNTASIADRGTSAIMTTASATASSTGVD  60

Query  80   GGIAATYAVASQWDGGYVANYTITQFGRDFDDRLAVAIHFA  120
            GGIAATYAVASQWDGGYVANYTITQFGRDFDDRLAVAIHFA
Sbjct  61   GGIAATYAVASQWDGGYVANYTITQFGRDFDDRLAVAIHFA  101


>gi|121637019|ref|YP_977242.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224989492|ref|YP_002644179.1| PE family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|121492666|emb|CAL71135.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224772605|dbj|BAH25411.1| PE family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|341601035|emb|CCC63707.1| PE family protein [Mycobacterium bovis BCG str. Moreau RDJ]
Length=101

 Score =  191 bits (484),  Expect = 4e-47, Method: Compositional matrix adjust.
 Identities = 99/101 (99%), Positives = 100/101 (99%), Gaps = 0/101 (0%)

Query  20   VRGAVNAVAGQVTGNGGSGNSGTSAAAANPNSDNTASIADRGTSAIMTTASATASSTGVD  79
            +RGAVNAVAGQVTGNGGSGNSGTSAAAANPNSDNTASIADRGTSAIMTTASATASSTGVD
Sbjct  1    MRGAVNAVAGQVTGNGGSGNSGTSAAAANPNSDNTASIADRGTSAIMTTASATASSTGVD  60

Query  80   GGIAATYAVASQWDGGYVANYTITQFGRDFDDRLAVAIHFA  120
            GGIAATYAVASQWDGGYVANYTI QFGRDFDDRLAVAIHFA
Sbjct  61   GGIAATYAVASQWDGGYVANYTINQFGRDFDDRLAVAIHFA  101


>gi|339631154|ref|YP_004722796.1| PE family protein [Mycobacterium africanum GM041182]
 gi|339330510|emb|CCC26175.1| PE family protein [Mycobacterium africanum GM041182]
Length=101

 Score =  190 bits (482),  Expect = 6e-47, Method: Compositional matrix adjust.
 Identities = 99/101 (99%), Positives = 100/101 (99%), Gaps = 0/101 (0%)

Query  20   VRGAVNAVAGQVTGNGGSGNSGTSAAAANPNSDNTASIADRGTSAIMTTASATASSTGVD  79
            +RGAVNAVAGQVTGNGGSGNSGTSAAAANPNSDNTASIADR TSAIMTTASATASSTGVD
Sbjct  1    MRGAVNAVAGQVTGNGGSGNSGTSAAAANPNSDNTASIADRDTSAIMTTASATASSTGVD  60

Query  80   GGIAATYAVASQWDGGYVANYTITQFGRDFDDRLAVAIHFA  120
            GGIAATYAVASQWDGGYVANYTITQFGRDFDDRLAVAIHFA
Sbjct  61   GGIAATYAVASQWDGGYVANYTITQFGRDFDDRLAVAIHFA  101


>gi|294992929|ref|ZP_06798620.1| PE family protein [Mycobacterium tuberculosis 210]
Length=128

 Score =  178 bits (451),  Expect = 3e-43, Method: Compositional matrix adjust.
 Identities = 92/96 (96%), Positives = 94/96 (98%), Gaps = 0/96 (0%)

Query  20   VRGAVNAVAGQVTGNGGSGNSGTSAAAANPNSDNTASIADRGTSAIMTTASATASSTGVD  79
            +RGAVNAVAGQVTGNGGSGNSGTSAAAANPNSDNTASIADRGTSAIMTTASATASSTGVD
Sbjct  1    MRGAVNAVAGQVTGNGGSGNSGTSAAAANPNSDNTASIADRGTSAIMTTASATASSTGVD  60

Query  80   GGIAATYAVASQWDGGYVANYTITQFGRDFDDRLAV  115
            GGIAATYAVASQWDGGYVANYTITQFGRDFDDR  +
Sbjct  61   GGIAATYAVASQWDGGYVANYTITQFGRDFDDRWRL  96


>gi|289761228|ref|ZP_06520606.1| pe family protein [Mycobacterium tuberculosis GM 1503]
 gi|289708734|gb|EFD72750.1| pe family protein [Mycobacterium tuberculosis GM 1503]
Length=90

 Score =  173 bits (438),  Expect = 1e-41, Method: Compositional matrix adjust.
 Identities = 89/90 (99%), Positives = 90/90 (100%), Gaps = 0/90 (0%)

Query  31   VTGNGGSGNSGTSAAAANPNSDNTASIADRGTSAIMTTASATASSTGVDGGIAATYAVAS  90
            +TGNGGSGNSGTSAAAANPNSDNTASIADRGTSAIMTTASATASSTGVDGGIAATYAVAS
Sbjct  1    MTGNGGSGNSGTSAAAANPNSDNTASIADRGTSAIMTTASATASSTGVDGGIAATYAVAS  60

Query  91   QWDGGYVANYTITQFGRDFDDRLAVAIHFA  120
            QWDGGYVANYTITQFGRDFDDRLAVAIHFA
Sbjct  61   QWDGGYVANYTITQFGRDFDDRLAVAIHFA  90


>gi|289569078|ref|ZP_06449305.1| PE family protein [Mycobacterium tuberculosis T17]
 gi|289749623|ref|ZP_06509001.1| PE family protein [Mycobacterium tuberculosis T92]
 gi|289542832|gb|EFD46480.1| PE family protein [Mycobacterium tuberculosis T17]
 gi|289690210|gb|EFD57639.1| PE family protein [Mycobacterium tuberculosis T92]
Length=90

 Score =  132 bits (331),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 76/77 (99%), Positives = 76/77 (99%), Gaps = 0/77 (0%)

Query  44   AAAANPNSDNTASIADRGTSAIMTTASATASSTGVDGGIAATYAVASQWDGGYVANYTIT  103
            AAAANPNSDNTASIADRGTSAIMTTASATASSTGVDGGIAATYAVASQWD GYVANYTIT
Sbjct  14   AAAANPNSDNTASIADRGTSAIMTTASATASSTGVDGGIAATYAVASQWDDGYVANYTIT  73

Query  104  QFGRDFDDRLAVAIHFA  120
            QFGRDFDDRLAVAIHFA
Sbjct  74   QFGRDFDDRLAVAIHFA  90


>gi|15840526|ref|NP_335563.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|13880702|gb|AAK45377.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|323720450|gb|EGB29538.1| PE family protein [Mycobacterium tuberculosis CDC1551A]
Length=55

 Score =  111 bits (278),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 55/55 (100%), Positives = 55/55 (100%), Gaps = 0/55 (0%)

Query  66   MTTASATASSTGVDGGIAATYAVASQWDGGYVANYTITQFGRDFDDRLAVAIHFA  120
            MTTASATASSTGVDGGIAATYAVASQWDGGYVANYTITQFGRDFDDRLAVAIHFA
Sbjct  1    MTTASATASSTGVDGGIAATYAVASQWDGGYVANYTITQFGRDFDDRLAVAIHFA  55


>gi|289744830|ref|ZP_06504208.1| PE family protein [Mycobacterium tuberculosis 02_1987]
 gi|289757176|ref|ZP_06516554.1| PE family protein [Mycobacterium tuberculosis T85]
 gi|289685358|gb|EFD52846.1| PE family protein [Mycobacterium tuberculosis 02_1987]
 gi|289712740|gb|EFD76752.1| PE family protein [Mycobacterium tuberculosis T85]
Length=82

 Score = 80.5 bits (197),  Expect = 8e-14, Method: Compositional matrix adjust.
 Identities = 47/50 (94%), Positives = 48/50 (96%), Gaps = 0/50 (0%)

Query  66   MTTASATASSTGVDGGIAATYAVASQWDGGYVANYTITQFGRDFDDRLAV  115
            MTTASATASSTGVDGGIAATYAVASQWDGGYVANYTITQFGRDFDDR  +
Sbjct  1    MTTASATASSTGVDGGIAATYAVASQWDGGYVANYTITQFGRDFDDRWRL  50


>gi|118616768|ref|YP_905100.1| PE-PGRS family protein [Mycobacterium ulcerans Agy99]
 gi|118568878|gb|ABL03629.1| PE-PGRS family protein [Mycobacterium ulcerans Agy99]
Length=847

 Score = 39.7 bits (91),  Expect = 0.14, Method: Compositional matrix adjust.
 Identities = 15/25 (60%), Positives = 20/25 (80%), Gaps = 0/25 (0%)

Query  79   DGGIAATYAVASQWDGGYVANYTIT  103
            DGG+AA Y++ SQWD G++  YTIT
Sbjct  223  DGGVAAAYSLTSQWDSGFIGRYTIT  247


 Score = 38.5 bits (88),  Expect = 0.36, Method: Compositional matrix adjust.
 Identities = 16/25 (64%), Positives = 19/25 (76%), Gaps = 0/25 (0%)

Query  82   IAATYAVASQWDGGYVANYTITQFG  106
            + ATY V SQWD G+VANYTI+  G
Sbjct  411  VPATYTVTSQWDNGFVANYTISNSG  435


>gi|183984251|ref|YP_001852542.1| PE-PGRS family protein [Mycobacterium marinum M]
 gi|183177577|gb|ACC42687.1| PE-PGRS family protein [Mycobacterium marinum M]
Length=899

 Score = 39.7 bits (91),  Expect = 0.15, Method: Compositional matrix adjust.
 Identities = 15/25 (60%), Positives = 20/25 (80%), Gaps = 0/25 (0%)

Query  79   DGGIAATYAVASQWDGGYVANYTIT  103
            DGG+AA Y++ SQWD G++  YTIT
Sbjct  223  DGGVAAAYSLTSQWDSGFIGRYTIT  247


 Score = 39.3 bits (90),  Expect = 0.18, Method: Compositional matrix adjust.
 Identities = 17/25 (68%), Positives = 20/25 (80%), Gaps = 0/25 (0%)

Query  82   IAATYAVASQWDGGYVANYTITQFG  106
            +AATY V SQWD G+VANYTI+  G
Sbjct  455  VAATYTVTSQWDNGFVANYTISNSG  479


>gi|240169119|ref|ZP_04747778.1| glycoside hydrolase family protein [Mycobacterium kansasii ATCC 
12478]
Length=819

 Score = 37.7 bits (86),  Expect = 0.61, Method: Compositional matrix adjust.
 Identities = 17/25 (68%), Positives = 19/25 (76%), Gaps = 0/25 (0%)

Query  82   IAATYAVASQWDGGYVANYTITQFG  106
            I ATYA  SQW+ G+VANYTIT  G
Sbjct  447  ITATYAPTSQWNNGFVANYTITNTG  471


>gi|118617892|ref|YP_906224.1| PE family protein [Mycobacterium ulcerans Agy99]
 gi|118570002|gb|ABL04753.1| PE family protein [Mycobacterium ulcerans Agy99]
Length=400

 Score = 36.2 bits (82),  Expect = 1.8, Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query  1    SFAGAEAANASQLQSIARQVRGAVNAVAGQVTGNGGSGNSGTSAAAANPN  50
            ++A AEA +AS LQ++ R V GA+NA    + G    GN G    AANPN
Sbjct  86   AYASAEAQSASLLQTVGRDVLGAINAPTEFLLGRPLIGN-GADGTAANPN  134


>gi|15843203|ref|NP_338240.1| PE_PGRS family protein [Mycobacterium tuberculosis CDC1551]
 gi|31794767|ref|NP_857260.1| PE-PGRS family protein [Mycobacterium bovis AF2122/97]
 gi|57117129|ref|YP_177993.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Rv]
 17 more sequence titles
 gi|121639510|ref|YP_979734.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|148663454|ref|YP_001284977.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Ra]
 gi|148824796|ref|YP_001289550.1| PE-PGRS family protein [Mycobacterium tuberculosis F11]
 gi|224992007|ref|YP_002646696.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253800631|ref|YP_003033632.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 1435]
 gi|7476153|pir||G70804 hypothetical glycine-rich protein Rv3590c - Mycobacterium tuberculosis 
(strain H37RV)
 gi|13883557|gb|AAK48054.1| PE_PGRS family protein [Mycobacterium tuberculosis CDC1551]
 gi|31620364|emb|CAD95807.1| PE-PGRS FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
 gi|41352810|emb|CAE55618.1| PE-PGRS FAMILY PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|121495158|emb|CAL73644.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|148507606|gb|ABQ75415.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Ra]
 gi|148723323|gb|ABR07948.1| PE-PGRS family protein [Mycobacterium tuberculosis F11]
 gi|224775122|dbj|BAH27928.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253322134|gb|ACT26737.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 1435]
 gi|328460362|gb|AEB05785.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 4207]
 gi|341603531|emb|CCC66212.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Moreau RDJ]
 gi|344221423|gb|AEN02054.1| PE-PGRS family protein [Mycobacterium tuberculosis CTRI-2]
Length=584

 Score = 36.2 bits (82),  Expect = 1.8, Method: Compositional matrix adjust.
 Identities = 19/39 (49%), Positives = 25/39 (65%), Gaps = 0/39 (0%)

Query  1    SFAGAEAANASQLQSIARQVRGAVNAVAGQVTGNGGSGN  39
            S+A AEAANAS LQ++ +QV G +N  A  + G    GN
Sbjct  86   SYASAEAANASPLQAVEQQVLGLINGPAQTLLGRPLIGN  124


>gi|339300010|gb|AEJ52120.1| PE-PGRS family protein [Mycobacterium tuberculosis CCDC5180]
Length=584

 Score = 36.2 bits (82),  Expect = 1.9, Method: Compositional matrix adjust.
 Identities = 19/39 (49%), Positives = 25/39 (65%), Gaps = 0/39 (0%)

Query  1    SFAGAEAANASQLQSIARQVRGAVNAVAGQVTGNGGSGN  39
            S+A AEAANAS LQ++ +QV G +N  A  + G    GN
Sbjct  86   SYASAEAANASPLQAVEQQVLGLINGPAQTLLGRPLIGN  124


>gi|294993710|ref|ZP_06799401.1| PE-PGRS family protein [Mycobacterium tuberculosis 210]
 gi|326905429|gb|EGE52362.1| PE-PGRS family protein [Mycobacterium tuberculosis W-148]
 gi|339296409|gb|AEJ48520.1| PE-PGRS family protein [Mycobacterium tuberculosis CCDC5079]
Length=584

 Score = 36.2 bits (82),  Expect = 1.9, Method: Compositional matrix adjust.
 Identities = 19/39 (49%), Positives = 25/39 (65%), Gaps = 0/39 (0%)

Query  1    SFAGAEAANASQLQSIARQVRGAVNAVAGQVTGNGGSGN  39
            S+A AEAANAS LQ++ +QV G +N  A  + G    GN
Sbjct  86   SYASAEAANASPLQAVEQQVLGLINGPAQTLLGRPLIGN  124


>gi|339633589|ref|YP_004725231.1| PE-PGRS family protein [Mycobacterium africanum GM041182]
 gi|339332945|emb|CCC28672.1| PE-PGRS family protein [Mycobacterium africanum GM041182]
Length=584

 Score = 35.8 bits (81),  Expect = 1.9, Method: Compositional matrix adjust.
 Identities = 19/39 (49%), Positives = 25/39 (65%), Gaps = 0/39 (0%)

Query  1    SFAGAEAANASQLQSIARQVRGAVNAVAGQVTGNGGSGN  39
            S+A AEAANAS LQ++ +QV G +N  A  + G    GN
Sbjct  86   SYASAEAANASPLQAVEQQVLGLINGPAQTLLGRPLIGN  124


>gi|240172383|ref|ZP_04751042.1| PE-PGRS family protein [Mycobacterium kansasii ATCC 12478]
Length=165

 Score = 35.8 bits (81),  Expect = 2.0, Method: Compositional matrix adjust.
 Identities = 34/84 (41%), Positives = 44/84 (53%), Gaps = 11/84 (13%)

Query  1    SFAGAEAANASQLQSIARQVRGAVN----AVAGQ-VTGNGGSGNSGTSAAAANP--NSDN  53
            S+AGAEAAN S LQ++ + +   +N    AV G+ + GNG +G  GT    A P      
Sbjct  86   SYAGAEAANVSPLQAVEQDLLNVINAPTLAVLGRPLIGNGANGAPGTG-PTARPAACCTA  144

Query  54   TASIADRGTSAIMTTASATASSTG  77
            TA  A RG     TT +ATA   G
Sbjct  145  TAEPAGRGRP---TTTAATAGPPG  165


>gi|240173200|ref|ZP_04751858.1| PE-PGRS family protein [Mycobacterium kansasii ATCC 12478]
Length=155

 Score = 35.8 bits (81),  Expect = 2.1, Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query  1    SFAGAEAANASQLQSIARQVRGAVNAVAGQVTGNGGSGNSGTSAAAANPN  50
            ++AGAEAAN + LQ++ + + GA+NA A  + G    GN G    AA+PN
Sbjct  86   AYAGAEAANVTPLQTLEQSLLGAINAPAQTLFGRPFIGN-GADGTAASPN  134


>gi|254552700|ref|ZP_05143147.1| PE-PGRS family protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
Length=463

 Score = 35.8 bits (81),  Expect = 2.4, Method: Compositional matrix adjust.
 Identities = 19/39 (49%), Positives = 25/39 (65%), Gaps = 0/39 (0%)

Query  1    SFAGAEAANASQLQSIARQVRGAVNAVAGQVTGNGGSGN  39
            S+A AEAANAS LQ++ +QV G +N  A  + G    GN
Sbjct  86   SYASAEAANASPLQAVEQQVLGLINGPAQTLLGRPLIGN  124


>gi|289445184|ref|ZP_06434928.1| PE-PGRS family protein [Mycobacterium tuberculosis CPHL_A]
 gi|289418142|gb|EFD15343.1| PE-PGRS family protein [Mycobacterium tuberculosis CPHL_A]
Length=430

 Score = 35.4 bits (80),  Expect = 2.9, Method: Compositional matrix adjust.
 Identities = 19/39 (49%), Positives = 25/39 (65%), Gaps = 0/39 (0%)

Query  1    SFAGAEAANASQLQSIARQVRGAVNAVAGQVTGNGGSGN  39
            S+A AEAANAS LQ++ +QV G +N  A  + G    GN
Sbjct  86   SYASAEAANASPLQAVEQQVLGLINGPAQTLLGRPLIGN  124


>gi|183982606|ref|YP_001850897.1| PE-PGRS family protein [Mycobacterium marinum M]
 gi|183175932|gb|ACC41042.1| PE-PGRS family protein [Mycobacterium marinum M]
Length=506

 Score = 35.0 bits (79),  Expect = 3.9, Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 5/50 (10%)

Query  1    SFAGAEAANASQLQSIARQVRGAVNA-----VAGQVTGNGGSGNSGTSAA  45
            S+A AEAANAS LQ+I +Q+  A+NA     +   + GNG  G  G + A
Sbjct  86   SYALAEAANASPLQAIEQQLLAAINAPTQTLLGRPLIGNGADGAPGQNGA  135


>gi|240171454|ref|ZP_04750113.1| PE-PGRS family protein [Mycobacterium kansasii ATCC 12478]
Length=538

 Score = 35.0 bits (79),  Expect = 3.9, Method: Compositional matrix adjust.
 Identities = 15/25 (60%), Positives = 19/25 (76%), Gaps = 0/25 (0%)

Query  82   IAATYAVASQWDGGYVANYTITQFG  106
            IAATY++ SQWD G+  +YTIT  G
Sbjct  59   IAATYSMGSQWDNGFTGSYTITNSG  83


>gi|330467596|ref|YP_004405339.1| cellulose-binding family II protein [Verrucosispora maris AB-18-032]
 gi|328810567|gb|AEB44739.1| cellulose-binding family II protein [Verrucosispora maris AB-18-032]
Length=570

 Score = 35.0 bits (79),  Expect = 3.9, Method: Compositional matrix adjust.
 Identities = 16/25 (64%), Positives = 19/25 (76%), Gaps = 0/25 (0%)

Query  82   IAATYAVASQWDGGYVANYTITQFG  106
             +ATYAV+SQW GG+ AN TIT  G
Sbjct  40   CSATYAVSSQWQGGFGANVTITNLG  64


>gi|183984157|ref|YP_001852448.1| PE-PGRS family protein [Mycobacterium marinum M]
 gi|183177483|gb|ACC42593.1| PE-PGRS family protein [Mycobacterium marinum M]
Length=683

 Score = 34.7 bits (78),  Expect = 4.8, Method: Compositional matrix adjust.
 Identities = 21/49 (43%), Positives = 29/49 (60%), Gaps = 1/49 (2%)

Query  1    SFAGAEAANASQLQSIARQVRGAVNAVAGQVTGNGGSGNSGTSAAAANP  49
            S+ GAEAANA+ LQ++ +   G +NA    + G    GN G +  AANP
Sbjct  86   SYVGAEAANATPLQTLEQDALGIINAPTQALVGRPLIGN-GANGTAANP  133


>gi|183982972|ref|YP_001851263.1| PE-PGRS family protein [Mycobacterium marinum M]
 gi|183176298|gb|ACC41408.1| PE-PGRS family protein [Mycobacterium marinum M]
Length=609

 Score = 33.9 bits (76),  Expect = 8.4, Method: Compositional matrix adjust.
 Identities = 21/52 (41%), Positives = 29/52 (56%), Gaps = 1/52 (1%)

Query  1    SFAGAEAANASQLQSIARQVRGAVNAVAGQVTGNGGSGNSGTSAAAANPNSD  52
            S+A AEA N   LQS+ + + G VNA    + G    GN G +  AA+PN +
Sbjct  86   SYANAEATNTLTLQSVQQDLLGLVNAPTQALLGRPLIGN-GANGTAADPNGE  136



Lambda     K      H
   0.309    0.121    0.332 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128530997826


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40