BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1107c
Length=85
Score E
Sequences producing significant alignments: (Bits) Value
gi|15840544|ref|NP_335581.1| exodeoxyribonuclease VII small subu... 172 1e-41
gi|15608247|ref|NP_215623.1| exodeoxyribonuclease VII small subu... 172 2e-41
gi|308231737|ref|ZP_07413600.2| exodeoxyribonuclease VII small s... 135 2e-30
gi|240171094|ref|ZP_04749753.1| exodeoxyribonuclease VII small s... 123 1e-26
gi|118616064|ref|YP_904396.1| exodeoxyribonuclease VII small sub... 121 3e-26
gi|183984329|ref|YP_001852620.1| exodeoxyribonuclease VII (small... 121 3e-26
gi|254819705|ref|ZP_05224706.1| exodeoxyribonuclease VII small s... 117 7e-25
gi|296169973|ref|ZP_06851580.1| exodeoxyribonuclease VII small s... 115 2e-24
gi|41408785|ref|NP_961621.1| exodeoxyribonuclease VII small subu... 114 6e-24
gi|15828046|ref|NP_302309.1| exodeoxyribonuclease VII small subu... 113 9e-24
gi|13626719|sp|Q9X784.2|EX7S_MYCLE RecName: Full=Exodeoxyribonuc... 113 1e-23
gi|342861696|ref|ZP_08718342.1| exodeoxyribonuclease VII small s... 110 5e-23
gi|254774111|ref|ZP_05215627.1| exodeoxyribonuclease VII small s... 110 5e-23
gi|226365338|ref|YP_002783121.1| exodeoxyribonuclease VII small ... 99.8 1e-19
gi|120405586|ref|YP_955415.1| exodeoxyribonuclease VII, small su... 99.0 2e-19
gi|111022830|ref|YP_705802.1| exodeoxyribonuclease VII small sub... 99.0 2e-19
gi|296140800|ref|YP_003648043.1| exodeoxyribonuclease VII small ... 96.3 1e-18
gi|229493949|ref|ZP_04387721.1| exodeoxyribonuclease VII, small ... 95.9 2e-18
gi|226307724|ref|YP_002767684.1| exodeoxyribonuclease VII small ... 95.5 2e-18
gi|145222664|ref|YP_001133342.1| exodeoxyribonuclease VII, small... 95.1 3e-18
gi|315443127|ref|YP_004076006.1| exodeoxyribonuclease VII small ... 95.1 3e-18
gi|169628347|ref|YP_001701996.1| exodeoxyribonuclease VII small ... 93.6 1e-17
gi|118470322|ref|YP_889473.1| exodeoxyribonuclease VII small sub... 93.2 1e-17
gi|54026772|ref|YP_121014.1| exodeoxyribonuclease VII small subu... 92.8 2e-17
gi|108801072|ref|YP_641269.1| exodeoxyribonuclease VII small sub... 92.8 2e-17
gi|312138753|ref|YP_004006089.1| exodeoxyribonuclease vii small ... 91.7 4e-17
gi|343925117|ref|ZP_08764649.1| exodeoxyribonuclease 7 small sub... 91.3 4e-17
gi|319950219|ref|ZP_08024146.1| exodeoxyribonuclease VII, small ... 90.5 7e-17
gi|333921061|ref|YP_004494642.1| exodeoxyribonuclease 7 small su... 90.1 1e-16
gi|262201632|ref|YP_003272840.1| exodeoxyribonuclease VII small ... 89.7 1e-16
gi|38233537|ref|NP_939304.1| exodeoxyribonuclease VII small subu... 86.3 2e-15
gi|225022962|ref|ZP_03712154.1| hypothetical protein CORMATOL_03... 85.9 2e-15
gi|305681941|ref|ZP_07404745.1| exodeoxyribonuclease VII, small ... 85.9 2e-15
gi|326381852|ref|ZP_08203545.1| exodeoxyribonuclease VII small s... 84.3 6e-15
gi|300858158|ref|YP_003783141.1| exodeoxyribonuclease small subu... 82.8 1e-14
gi|331694828|ref|YP_004331067.1| Exodeoxyribonuclease 7 small su... 82.8 2e-14
gi|19552245|ref|NP_600247.1| exodeoxyribonuclease VII small subu... 82.0 3e-14
gi|337290409|ref|YP_004629430.1| exodeoxyribonuclease small subu... 82.0 3e-14
gi|213965519|ref|ZP_03393714.1| exodeoxyribonuclease VII, small ... 81.6 4e-14
gi|68536537|ref|YP_251242.1| exodeoxyribonuclease VII small subu... 81.3 4e-14
gi|25027633|ref|NP_737687.1| exodeoxyribonuclease VII small subu... 81.3 4e-14
gi|256374874|ref|YP_003098534.1| exodeoxyribonuclease VII, small... 79.7 1e-13
gi|324997962|ref|ZP_08119074.1| exodeoxyribonuclease VII small s... 79.7 1e-13
gi|296393507|ref|YP_003658391.1| exodeoxyribonuclease VII small ... 79.3 2e-13
gi|317506617|ref|ZP_07964409.1| exodeoxyribonuclease VII [Segnil... 79.0 2e-13
gi|333989697|ref|YP_004522311.1| exodeoxyribonuclease [Mycobacte... 77.0 9e-13
gi|227501576|ref|ZP_03931625.1| exodeoxyribonuclease VII small s... 76.6 1e-12
gi|306835736|ref|ZP_07468740.1| exodeoxyribonuclease VII small s... 76.6 1e-12
gi|227487857|ref|ZP_03918173.1| exodeoxyribonuclease VII small s... 76.6 1e-12
gi|29829754|ref|NP_824388.1| exodeoxyribonuclease VII small subu... 76.6 1e-12
>gi|15840544|ref|NP_335581.1| exodeoxyribonuclease VII small subunit [Mycobacterium tuberculosis
CDC1551]
gi|254231385|ref|ZP_04924712.1| exodeoxyribonuclease VII (small subunit) xseB [Mycobacterium
tuberculosis C]
gi|13880721|gb|AAK45395.1| exodeoxyribonuclease, small subunit [Mycobacterium tuberculosis
CDC1551]
gi|124600444|gb|EAY59454.1| exodeoxyribonuclease VII (small subunit) xseB [Mycobacterium
tuberculosis C]
Length=90
Score = 172 bits (436), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 85/85 (100%), Positives = 85/85 (100%), Gaps = 0/85 (0%)
Query 1 MVCDPNGDDTGRTHATVPVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAK 60
MVCDPNGDDTGRTHATVPVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAK
Sbjct 6 MVCDPNGDDTGRTHATVPVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAK 65
Query 61 RCEEHLAGARQRVSDVLAGDEAQNG 85
RCEEHLAGARQRVSDVLAGDEAQNG
Sbjct 66 RCEEHLAGARQRVSDVLAGDEAQNG 90
>gi|15608247|ref|NP_215623.1| exodeoxyribonuclease VII small subunit [Mycobacterium tuberculosis
H37Rv]
gi|31792300|ref|NP_854793.1| exodeoxyribonuclease VII small subunit [Mycobacterium bovis AF2122/97]
gi|121637038|ref|YP_977261.1| exodeoxyribonuclease VII small subunit [Mycobacterium bovis BCG
str. Pasteur 1173P2]
63 more sequence titles
Length=85
Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/85 (100%), Positives = 85/85 (100%), Gaps = 0/85 (0%)
Query 1 MVCDPNGDDTGRTHATVPVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAK 60
MVCDPNGDDTGRTHATVPVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAK
Sbjct 1 MVCDPNGDDTGRTHATVPVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAK 60
Query 61 RCEEHLAGARQRVSDVLAGDEAQNG 85
RCEEHLAGARQRVSDVLAGDEAQNG
Sbjct 61 RCEEHLAGARQRVSDVLAGDEAQNG 85
>gi|308231737|ref|ZP_07413600.2| exodeoxyribonuclease VII small subunit xseB [Mycobacterium tuberculosis
SUMu001]
gi|308370062|ref|ZP_07420160.2| exodeoxyribonuclease VII small subunit xseB [Mycobacterium tuberculosis
SUMu002]
gi|308370618|ref|ZP_07422141.2| exodeoxyribonuclease VII small subunit xseB [Mycobacterium tuberculosis
SUMu003]
13 more sequence titles
Length=69
Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/69 (99%), Positives = 69/69 (100%), Gaps = 0/69 (0%)
Query 17 VPVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEHLAGARQRVSDV 76
+PVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEHLAGARQRVSDV
Sbjct 1 MPVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEHLAGARQRVSDV 60
Query 77 LAGDEAQNG 85
LAGDEAQNG
Sbjct 61 LAGDEAQNG 69
>gi|240171094|ref|ZP_04749753.1| exodeoxyribonuclease VII small subunit [Mycobacterium kansasii
ATCC 12478]
Length=85
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/84 (72%), Positives = 68/84 (81%), Gaps = 0/84 (0%)
Query 1 MVCDPNGDDTGRTHATVPVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAK 60
M D NG++ + P+SQLGYEACRDEL+EVVRLLEQGGLDLD SL+LWERGEQLAK
Sbjct 1 MAADENGENHDGNGSITPISQLGYEACRDELIEVVRLLEQGGLDLDTSLKLWERGEQLAK 60
Query 61 RCEEHLAGARQRVSDVLAGDEAQN 84
RCEEHLAGARQRV+D LA A +
Sbjct 61 RCEEHLAGARQRVTDALAAGAASD 84
>gi|118616064|ref|YP_904396.1| exodeoxyribonuclease VII small subunit [Mycobacterium ulcerans
Agy99]
gi|118568174|gb|ABL02925.1| exodeoxyribonuclease VII (small subunit) XseB [Mycobacterium
ulcerans Agy99]
Length=84
Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/77 (77%), Positives = 65/77 (85%), Gaps = 0/77 (0%)
Query 8 DDTGRTHATVPVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEHLA 67
D G T + P+SQLGYEACRDEL+EVVRLLEQGGLDLD SL+LWERGE LAKRCEEHLA
Sbjct 7 DHNGETDSATPISQLGYEACRDELIEVVRLLEQGGLDLDTSLKLWERGEVLAKRCEEHLA 66
Query 68 GARQRVSDVLAGDEAQN 84
GARQRV+D LA EA+
Sbjct 67 GARQRVADALAASEAEQ 83
>gi|183984329|ref|YP_001852620.1| exodeoxyribonuclease VII (small subunit) XseB [Mycobacterium
marinum M]
gi|226700109|sp|B2HT44.1|EX7S_MYCMM RecName: Full=Exodeoxyribonuclease 7 small subunit; AltName:
Full=Exodeoxyribonuclease VII small subunit; Short=Exonuclease
VII small subunit
gi|183177655|gb|ACC42765.1| exodeoxyribonuclease vii (small subunit) XseB [Mycobacterium
marinum M]
Length=82
Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/77 (77%), Positives = 65/77 (85%), Gaps = 0/77 (0%)
Query 8 DDTGRTHATVPVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEHLA 67
D G T + P+SQLGYEACRDEL+EVVRLLEQGGLDLD SL+LWERGE LAKRCEEHLA
Sbjct 5 DHNGETDSVTPISQLGYEACRDELIEVVRLLEQGGLDLDTSLKLWERGEVLAKRCEEHLA 64
Query 68 GARQRVSDVLAGDEAQN 84
GARQRV+D LA EA+
Sbjct 65 GARQRVADALAASEAEQ 81
>gi|254819705|ref|ZP_05224706.1| exodeoxyribonuclease VII small subunit [Mycobacterium intracellulare
ATCC 13950]
Length=89
Score = 117 bits (292), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 56/72 (78%), Positives = 64/72 (89%), Gaps = 0/72 (0%)
Query 13 THATVPVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEHLAGARQR 72
T + P+SQLGYEACRDEL+EVVRLLEQGGLDLDASL+LWERGEQLAKRCEEHLAGAR+R
Sbjct 17 TESITPISQLGYEACRDELIEVVRLLEQGGLDLDASLQLWERGEQLAKRCEEHLAGARKR 76
Query 73 VSDVLAGDEAQN 84
+ D LA +A +
Sbjct 77 IEDALASGDADD 88
>gi|296169973|ref|ZP_06851580.1| exodeoxyribonuclease VII small subunit [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295895377|gb|EFG75083.1| exodeoxyribonuclease VII small subunit [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=79
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/71 (77%), Positives = 63/71 (89%), Gaps = 0/71 (0%)
Query 14 HATVPVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEHLAGARQRV 73
+ P+S LGYEACRDEL+EVVRLLEQGGLDLDASL+LWERGEQLAKRCEEHLAGAR+R+
Sbjct 8 QSITPISSLGYEACRDELIEVVRLLEQGGLDLDASLQLWERGEQLAKRCEEHLAGARKRI 67
Query 74 SDVLAGDEAQN 84
D L+ +A+N
Sbjct 68 EDALSAGDAEN 78
>gi|41408785|ref|NP_961621.1| exodeoxyribonuclease VII small subunit [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|118465063|ref|YP_880473.1| exodeoxyribonuclease VII small subunit [Mycobacterium avium 104]
gi|67460343|sp|Q73WH3.1|EX7S_MYCPA RecName: Full=Exodeoxyribonuclease 7 small subunit; AltName:
Full=Exodeoxyribonuclease VII small subunit; Short=Exonuclease
VII small subunit
gi|158512432|sp|A0QC35.1|EX7S_MYCA1 RecName: Full=Exodeoxyribonuclease 7 small subunit; AltName:
Full=Exodeoxyribonuclease VII small subunit; Short=Exonuclease
VII small subunit
gi|41397143|gb|AAS05004.1| XseB [Mycobacterium avium subsp. paratuberculosis K-10]
gi|118166350|gb|ABK67247.1| exodeoxyribonuclease VII, small subunit [Mycobacterium avium
104]
gi|336458722|gb|EGO37682.1| exodeoxyribonuclease VII, small subunit [Mycobacterium avium
subsp. paratuberculosis S397]
Length=82
Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 56/79 (71%), Positives = 63/79 (80%), Gaps = 0/79 (0%)
Query 6 NGDDTGRTHATVPVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEH 65
N + A P+S+LGYEACRDEL+EVVR LEQGGLDLDASL LWERGEQLAKRCEEH
Sbjct 3 NNKKDEQAAAATPISRLGYEACRDELIEVVRQLEQGGLDLDASLNLWERGEQLAKRCEEH 62
Query 66 LAGARQRVSDVLAGDEAQN 84
LAGAR+R+ D LA EA +
Sbjct 63 LAGARKRIEDALAAGEADD 81
>gi|15828046|ref|NP_302309.1| exodeoxyribonuclease VII small subunit [Mycobacterium leprae
TN]
gi|221230523|ref|YP_002503939.1| exodeoxyribonuclease VII small subunit [Mycobacterium leprae
Br4923]
gi|4539097|emb|CAB39815.1| putative exodeoxyribonuclease small subunit [Mycobacterium leprae]
gi|13093599|emb|CAC30896.1| exonuclease VII small subunit [Mycobacterium leprae]
gi|219933630|emb|CAR72038.1| exonuclease VII small subunit [Mycobacterium leprae Br4923]
Length=87
Score = 113 bits (283), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 53/70 (76%), Positives = 62/70 (89%), Gaps = 0/70 (0%)
Query 16 TVPVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEHLAGARQRVSD 75
T P++QLGYEACRDEL+EVVRLLEQGGL+LD SL+LWERGEQLAKRCEEHL GARQRV+D
Sbjct 18 TTPINQLGYEACRDELIEVVRLLEQGGLNLDMSLKLWERGEQLAKRCEEHLDGARQRVAD 77
Query 76 VLAGDEAQNG 85
VL+ + +
Sbjct 78 VLSARQVEEA 87
>gi|13626719|sp|Q9X784.2|EX7S_MYCLE RecName: Full=Exodeoxyribonuclease 7 small subunit; AltName:
Full=Exodeoxyribonuclease VII small subunit; Short=Exonuclease
VII small subunit
Length=78
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/68 (78%), Positives = 62/68 (92%), Gaps = 0/68 (0%)
Query 16 TVPVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEHLAGARQRVSD 75
T P++QLGYEACRDEL+EVVRLLEQGGL+LD SL+LWERGEQLAKRCEEHL GARQRV+D
Sbjct 9 TTPINQLGYEACRDELIEVVRLLEQGGLNLDMSLKLWERGEQLAKRCEEHLDGARQRVAD 68
Query 76 VLAGDEAQ 83
VL+ + +
Sbjct 69 VLSARQVE 76
>gi|342861696|ref|ZP_08718342.1| exodeoxyribonuclease VII small subunit [Mycobacterium colombiense
CECT 3035]
gi|342130830|gb|EGT84126.1| exodeoxyribonuclease VII small subunit [Mycobacterium colombiense
CECT 3035]
Length=89
Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 52/71 (74%), Positives = 60/71 (85%), Gaps = 0/71 (0%)
Query 15 ATVPVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEHLAGARQRVS 74
+ P+S L YEACRDEL+EVVR LEQGGLDLD SL+LWERGEQLAKRCEEHLAGAR+R+
Sbjct 19 SITPISHLAYEACRDELIEVVRALEQGGLDLDESLKLWERGEQLAKRCEEHLAGARKRIE 78
Query 75 DVLAGDEAQNG 85
D LA EA++
Sbjct 79 DALAAGEAEDA 89
>gi|254774111|ref|ZP_05215627.1| exodeoxyribonuclease VII small subunit [Mycobacterium avium subsp.
avium ATCC 25291]
Length=82
Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 55/77 (72%), Positives = 61/77 (80%), Gaps = 0/77 (0%)
Query 6 NGDDTGRTHATVPVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEH 65
N + A P+S+LGYEACR EL+EVVR LEQGGLDLDASL LWERGEQLAKRCEEH
Sbjct 3 NNKKDEQAAAATPISRLGYEACRGELIEVVRQLEQGGLDLDASLNLWERGEQLAKRCEEH 62
Query 66 LAGARQRVSDVLAGDEA 82
LAGAR+R+ D LA EA
Sbjct 63 LAGARKRIEDALAAGEA 79
>gi|226365338|ref|YP_002783121.1| exodeoxyribonuclease VII small subunit [Rhodococcus opacus B4]
gi|226243828|dbj|BAH54176.1| exodeoxyribonuclease VII small subunit [Rhodococcus opacus B4]
Length=76
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/77 (65%), Positives = 61/77 (80%), Gaps = 7/77 (9%)
Query 2 VCDPNGDDTGRTHATVPVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKR 61
+ +P G+DT +++LGYEA RDEL++VV++LEQGGLDLDASL LWERGE LAKR
Sbjct 1 MSNPTGNDT-------DIAELGYEAARDELVDVVKVLEQGGLDLDASLALWERGEALAKR 53
Query 62 CEEHLAGARQRVSDVLA 78
CEEHLAGAR+RV LA
Sbjct 54 CEEHLAGARKRVETALA 70
>gi|120405586|ref|YP_955415.1| exodeoxyribonuclease VII, small subunit [Mycobacterium vanbaalenii
PYR-1]
gi|119958404|gb|ABM15409.1| Exodeoxyribonuclease VII small subunit [Mycobacterium vanbaalenii
PYR-1]
Length=70
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/68 (74%), Positives = 56/68 (83%), Gaps = 1/68 (1%)
Query 18 PVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEHLAGARQRVSDVL 77
P+S+LGYE RDEL+EVV LE GGLDLD SL+LWERGEQLAKRCEEHLAGAR RV L
Sbjct 3 PISELGYEQARDELIEVVERLEHGGLDLDTSLKLWERGEQLAKRCEEHLAGARSRVEKAL 62
Query 78 AG-DEAQN 84
A DEA++
Sbjct 63 AANDEAED 70
>gi|111022830|ref|YP_705802.1| exodeoxyribonuclease VII small subunit [Rhodococcus jostii RHA1]
gi|110822360|gb|ABG97644.1| probable exodeoxyribonuclease VII small subunit [Rhodococcus
jostii RHA1]
Length=76
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/74 (68%), Positives = 59/74 (80%), Gaps = 7/74 (9%)
Query 5 PNGDDTGRTHATVPVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEE 64
P G+DT +++LGYEA RDEL++VV++LEQGGLDLDASL LWERGE LAKRCEE
Sbjct 4 PTGNDT-------DIAELGYEAARDELVDVVKVLEQGGLDLDASLALWERGEALAKRCEE 56
Query 65 HLAGARQRVSDVLA 78
HLAGAR+RV LA
Sbjct 57 HLAGARKRVETALA 70
>gi|296140800|ref|YP_003648043.1| exodeoxyribonuclease VII small subunit [Tsukamurella paurometabola
DSM 20162]
gi|296028934|gb|ADG79704.1| exodeoxyribonuclease VII, small subunit [Tsukamurella paurometabola
DSM 20162]
Length=70
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/62 (76%), Positives = 51/62 (83%), Gaps = 0/62 (0%)
Query 16 TVPVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEHLAGARQRVSD 75
PV++LGYE RDEL EVVR+LEQGGLDLD SL LWERGE LAKRCEEHLAGARQR+
Sbjct 5 VTPVAELGYEEARDELAEVVRMLEQGGLDLDESLGLWERGEALAKRCEEHLAGARQRIEK 64
Query 76 VL 77
L
Sbjct 65 AL 66
>gi|229493949|ref|ZP_04387721.1| exodeoxyribonuclease VII, small subunit [Rhodococcus erythropolis
SK121]
gi|229319226|gb|EEN85075.1| exodeoxyribonuclease VII, small subunit [Rhodococcus erythropolis
SK121]
Length=72
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/60 (77%), Positives = 52/60 (87%), Gaps = 0/60 (0%)
Query 19 VSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEHLAGARQRVSDVLA 78
+++LGYEA RDEL+ VV++LEQGGLDLDASL LWERGE LAKRCEEHLAGAR RV LA
Sbjct 9 INELGYEAARDELVSVVKILEQGGLDLDASLSLWERGEALAKRCEEHLAGARARVEKALA 68
>gi|226307724|ref|YP_002767684.1| exodeoxyribonuclease VII small subunit [Rhodococcus erythropolis
PR4]
gi|226186841|dbj|BAH34945.1| putative exodeoxyribonuclease VII small subunit [Rhodococcus
erythropolis PR4]
Length=76
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/60 (77%), Positives = 52/60 (87%), Gaps = 0/60 (0%)
Query 19 VSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEHLAGARQRVSDVLA 78
+++LGYEA RDEL+ VV++LEQGGLDLDASL LWERGE LAKRCEEHLAGAR RV LA
Sbjct 13 INELGYEAARDELVSVVKILEQGGLDLDASLSLWERGEALAKRCEEHLAGARARVEKALA 72
>gi|145222664|ref|YP_001133342.1| exodeoxyribonuclease VII, small subunit [Mycobacterium gilvum
PYR-GCK]
gi|145215150|gb|ABP44554.1| Exodeoxyribonuclease VII small subunit [Mycobacterium gilvum
PYR-GCK]
Length=69
Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/61 (74%), Positives = 53/61 (87%), Gaps = 0/61 (0%)
Query 18 PVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEHLAGARQRVSDVL 77
P+S+LGYE RDEL++VV LE GGLDLDASL+LWERGE+LAKRCE+HLAGAR+RV L
Sbjct 3 PISELGYEEARDELIDVVEQLEHGGLDLDASLKLWERGEELAKRCEQHLAGARERVEKAL 62
Query 78 A 78
A
Sbjct 63 A 63
>gi|315443127|ref|YP_004076006.1| exodeoxyribonuclease VII small subunit [Mycobacterium sp. Spyr1]
gi|315261430|gb|ADT98171.1| Exodeoxyribonuclease VII small subunit [Mycobacterium sp. Spyr1]
Length=69
Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/62 (73%), Positives = 53/62 (86%), Gaps = 0/62 (0%)
Query 18 PVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEHLAGARQRVSDVL 77
P+S+LGYE RDEL++VV LE GGLDLDASL+LWERGE+LAKRCE+HLAGAR+RV L
Sbjct 3 PISELGYEEARDELIDVVEQLEHGGLDLDASLKLWERGEELAKRCEQHLAGARERVEKAL 62
Query 78 AG 79
A
Sbjct 63 AA 64
>gi|169628347|ref|YP_001701996.1| exodeoxyribonuclease VII small subunit [Mycobacterium abscessus
ATCC 19977]
gi|169240314|emb|CAM61342.1| Probable exodeoxyribonuclease VII small subunit [Mycobacterium
abscessus]
Length=69
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/68 (70%), Positives = 52/68 (77%), Gaps = 0/68 (0%)
Query 13 THATVPVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEHLAGARQR 72
T + PV LGYE R EL+EVV+ LEQGGLDLD SL LWERGE LAKRCEEHLAGAR+R
Sbjct 2 TESGKPVDTLGYEEARGELIEVVQQLEQGGLDLDTSLALWERGEALAKRCEEHLAGARKR 61
Query 73 VSDVLAGD 80
+ D L D
Sbjct 62 IEDALDSD 69
>gi|118470322|ref|YP_889473.1| exodeoxyribonuclease VII small subunit [Mycobacterium smegmatis
str. MC2 155]
gi|118171609|gb|ABK72505.1| exodeoxyribonuclease VII, small subunit [Mycobacterium smegmatis
str. MC2 155]
Length=70
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/65 (73%), Positives = 53/65 (82%), Gaps = 0/65 (0%)
Query 18 PVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEHLAGARQRVSDVL 77
P+S+LGYE RDEL+ VV+ LEQGGL LD SL+LWERGE LAKRCEEHLAGARQRV +
Sbjct 3 PISELGYEDARDELVAVVQQLEQGGLSLDDSLQLWERGEALAKRCEEHLAGARQRVEQAI 62
Query 78 AGDEA 82
A EA
Sbjct 63 AAREA 67
>gi|54026772|ref|YP_121014.1| exodeoxyribonuclease VII small subunit [Nocardia farcinica IFM
10152]
gi|67460224|sp|Q5YQ91.1|EX7S_NOCFA RecName: Full=Exodeoxyribonuclease 7 small subunit; AltName:
Full=Exodeoxyribonuclease VII small subunit; Short=Exonuclease
VII small subunit
gi|54018280|dbj|BAD59650.1| putative exodeoxyribonuclease VII small subunit [Nocardia farcinica
IFM 10152]
Length=78
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/66 (67%), Positives = 52/66 (79%), Gaps = 0/66 (0%)
Query 17 VPVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEHLAGARQRVSDV 76
++ GYE RDEL+ VV++LEQGG+DLD SL LWERGE LA RCEEHLAGAR+RV D
Sbjct 10 AEIAGFGYERARDELVNVVKMLEQGGMDLDESLALWERGEALANRCEEHLAGARKRVEDA 69
Query 77 LAGDEA 82
LAG E+
Sbjct 70 LAGSES 75
>gi|108801072|ref|YP_641269.1| exodeoxyribonuclease VII small subunit [Mycobacterium sp. MCS]
gi|119870214|ref|YP_940166.1| exodeoxyribonuclease VII small subunit [Mycobacterium sp. KMS]
gi|126436910|ref|YP_001072601.1| exodeoxyribonuclease VII small subunit [Mycobacterium sp. JLS]
gi|108771491|gb|ABG10213.1| Exodeoxyribonuclease VII small subunit [Mycobacterium sp. MCS]
gi|119696303|gb|ABL93376.1| Exodeoxyribonuclease VII small subunit [Mycobacterium sp. KMS]
gi|126236710|gb|ABO00111.1| Exodeoxyribonuclease VII small subunit [Mycobacterium sp. JLS]
Length=70
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/68 (67%), Positives = 56/68 (83%), Gaps = 0/68 (0%)
Query 18 PVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEHLAGARQRVSDVL 77
P+S++GYE RDEL+ VV+ LEQGGLDLDASL+LWERGE+LA+ CEEHLAGARQR+ L
Sbjct 3 PISEMGYEEARDELIAVVQQLEQGGLDLDASLKLWERGEELARCCEEHLAGARQRIESAL 62
Query 78 AGDEAQNG 85
+A +G
Sbjct 63 GERDADDG 70
>gi|312138753|ref|YP_004006089.1| exodeoxyribonuclease vii small subunit xseb [Rhodococcus equi
103S]
gi|325676554|ref|ZP_08156232.1| exodeoxyribonuclease VII small subunit [Rhodococcus equi ATCC
33707]
gi|311888092|emb|CBH47404.1| exodeoxyribonuclease VII small subunit XseB [Rhodococcus equi
103S]
gi|325552732|gb|EGD22416.1| exodeoxyribonuclease VII small subunit [Rhodococcus equi ATCC
33707]
Length=76
Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/64 (72%), Positives = 52/64 (82%), Gaps = 0/64 (0%)
Query 15 ATVPVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEHLAGARQRVS 74
+ V++LGYEA RDEL+ VV+ LE GGLDLD SL LWERGE LAKRCEEHLAGAR+RV
Sbjct 2 SNTDVAELGYEAARDELVVVVKTLELGGLDLDESLALWERGEALAKRCEEHLAGARKRVE 61
Query 75 DVLA 78
D LA
Sbjct 62 DALA 65
>gi|343925117|ref|ZP_08764649.1| exodeoxyribonuclease 7 small subunit [Gordonia alkanivorans NBRC
16433]
gi|343765048|dbj|GAA11575.1| exodeoxyribonuclease 7 small subunit [Gordonia alkanivorans NBRC
16433]
Length=85
Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/73 (62%), Positives = 54/73 (74%), Gaps = 2/73 (2%)
Query 6 NGDDTGRTHATVPVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEH 65
+ DDTG + PV++LGYE RDEL ++V LE GGLDLD SL LWERGE LA RCEEH
Sbjct 4 DSDDTGEEY--TPVAELGYEEARDELADIVGTLEHGGLDLDTSLALWERGEALATRCEEH 61
Query 66 LAGARQRVSDVLA 78
L GAR+R+ V+A
Sbjct 62 LRGARERIETVIA 74
>gi|319950219|ref|ZP_08024146.1| exodeoxyribonuclease VII, small subunit [Dietzia cinnamea P4]
gi|319436123|gb|EFV91316.1| exodeoxyribonuclease VII, small subunit [Dietzia cinnamea P4]
Length=77
Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/65 (70%), Positives = 51/65 (79%), Gaps = 0/65 (0%)
Query 17 VPVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEHLAGARQRVSDV 76
PVS+LGYE RDEL+EVVR+LE GG DLDASL LWERGE+LA RC EHL GAR R+ V
Sbjct 6 TPVSELGYEQARDELIEVVRILEAGGQDLDASLALWERGEELAARCTEHLDGARARIDAV 65
Query 77 LAGDE 81
L D+
Sbjct 66 LGDDD 70
>gi|333921061|ref|YP_004494642.1| exodeoxyribonuclease 7 small subunit [Amycolicicoccus subflavus
DQS3-9A1]
gi|333483282|gb|AEF41842.1| Exodeoxyribonuclease 7 small subunit [Amycolicicoccus subflavus
DQS3-9A1]
Length=92
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/69 (69%), Positives = 54/69 (79%), Gaps = 3/69 (4%)
Query 19 VSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEHLAGARQRVSDVLA 78
VS LGYE RDEL+EVVR LE+GGLDLD S+ LWERGE LA RCEEHLAGARQR+ +A
Sbjct 18 VSALGYEQARDELVEVVRNLERGGLDLDTSIALWERGEALADRCEEHLAGARQRIETAIA 77
Query 79 ---GDEAQN 84
GDE ++
Sbjct 78 RHSGDENRD 86
>gi|262201632|ref|YP_003272840.1| exodeoxyribonuclease VII small subunit [Gordonia bronchialis
DSM 43247]
gi|262084979|gb|ACY20947.1| exodeoxyribonuclease VII, small subunit [Gordonia bronchialis
DSM 43247]
Length=79
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/68 (64%), Positives = 49/68 (73%), Gaps = 0/68 (0%)
Query 17 VPVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEHLAGARQRVSDV 76
PV QLGYE RDEL E+V LE GGLDLD SLRLWERGE LA RC HL GAR+++ V
Sbjct 8 TPVEQLGYEQARDELAEIVTTLEHGGLDLDESLRLWERGEALATRCTHHLTGAREKIEAV 67
Query 77 LAGDEAQN 84
LA E+ +
Sbjct 68 LAQKESDD 75
>gi|38233537|ref|NP_939304.1| exodeoxyribonuclease VII small subunit [Corynebacterium diphtheriae
NCTC 13129]
gi|67460298|sp|Q6NI38.1|EX7S_CORDI RecName: Full=Exodeoxyribonuclease 7 small subunit; AltName:
Full=Exodeoxyribonuclease VII small subunit; Short=Exonuclease
VII small subunit
gi|38199797|emb|CAE49460.1| Exodeoxyribonuclease VII small subunit [Corynebacterium diphtheriae]
Length=85
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/77 (60%), Positives = 53/77 (69%), Gaps = 1/77 (1%)
Query 1 MVCDPNGDDTGRTHATVPVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAK 60
M D G TG T+A PV +L YE RDEL+EVVR+LE G + LD SL WERGE LAK
Sbjct 1 MPHDIIGQGTG-TNAFAPVEELSYEQARDELVEVVRILELGQMGLDESLAYWERGEALAK 59
Query 61 RCEEHLAGARQRVSDVL 77
RCEEHL GA+QR+ L
Sbjct 60 RCEEHLNGAQQRIEKAL 76
>gi|225022962|ref|ZP_03712154.1| hypothetical protein CORMATOL_03008 [Corynebacterium matruchotii
ATCC 33806]
gi|224944185|gb|EEG25394.1| hypothetical protein CORMATOL_03008 [Corynebacterium matruchotii
ATCC 33806]
Length=150
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/62 (67%), Positives = 46/62 (75%), Gaps = 0/62 (0%)
Query 18 PVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEHLAGARQRVSDVL 77
PV L YE RDEL+EVVR+LE G + LD SL+ WERGE LAKRCEEHLAGA +RV L
Sbjct 18 PVESLNYEQARDELIEVVRILELGQMGLDESLKYWERGEALAKRCEEHLAGAARRVEAAL 77
Query 78 AG 79
G
Sbjct 78 QG 79
>gi|305681941|ref|ZP_07404745.1| exodeoxyribonuclease VII, small subunit [Corynebacterium matruchotii
ATCC 14266]
gi|305658414|gb|EFM47917.1| exodeoxyribonuclease VII, small subunit [Corynebacterium matruchotii
ATCC 14266]
Length=150
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/62 (67%), Positives = 46/62 (75%), Gaps = 0/62 (0%)
Query 18 PVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEHLAGARQRVSDVL 77
PV L YE RDEL+EVVR+LE G + LD SL+ WERGE LAKRCEEHLAGA +RV L
Sbjct 18 PVESLNYEQARDELIEVVRILELGQMGLDESLKYWERGEALAKRCEEHLAGAARRVEAAL 77
Query 78 AG 79
G
Sbjct 78 QG 79
>gi|326381852|ref|ZP_08203545.1| exodeoxyribonuclease VII small subunit [Gordonia neofelifaecis
NRRL B-59395]
gi|326199278|gb|EGD56459.1| exodeoxyribonuclease VII small subunit [Gordonia neofelifaecis
NRRL B-59395]
Length=76
Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/68 (62%), Positives = 49/68 (73%), Gaps = 0/68 (0%)
Query 17 VPVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEHLAGARQRVSDV 76
PV++L YE RDEL +VV LE+GGL LDASL LWERGE LAKRC EHL GAR R+
Sbjct 8 TPVAELDYEQARDELADVVTTLERGGLGLDASLSLWERGEALAKRCTEHLEGARTRIEAA 67
Query 77 LAGDEAQN 84
L DE ++
Sbjct 68 LNSDEDED 75
>gi|300858158|ref|YP_003783141.1| exodeoxyribonuclease small subunit [Corynebacterium pseudotuberculosis
FRC41]
gi|300685612|gb|ADK28534.1| exodeoxyribonuclease small subunit [Corynebacterium pseudotuberculosis
FRC41]
gi|302205880|gb|ADL10222.1| Exodeoxyribonuclease small subunit [Corynebacterium pseudotuberculosis
C231]
gi|308276115|gb|ADO26014.1| exodeoxyribonuclease small subunit [Corynebacterium pseudotuberculosis
I19]
gi|341824551|gb|AEK92072.1| Exodeoxyribonuclease small subunit [Corynebacterium pseudotuberculosis
PAT10]
Length=98
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/77 (56%), Positives = 49/77 (64%), Gaps = 1/77 (1%)
Query 1 MVCDPNGDDTGRTHATVPVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAK 60
M D G TG A + QL YE R+EL E+VR+LE G + LD SL+ WERGE LAK
Sbjct 1 MNSDVIGHGTGEA-AFTAIEQLSYEQARNELAEIVRILELGQMSLDESLKYWERGEALAK 59
Query 61 RCEEHLAGARQRVSDVL 77
RCEEHLAGA RV L
Sbjct 60 RCEEHLAGAAHRVEQAL 76
>gi|331694828|ref|YP_004331067.1| Exodeoxyribonuclease 7 small subunit [Pseudonocardia dioxanivorans
CB1190]
gi|326949517|gb|AEA23214.1| Exodeoxyribonuclease 7 small subunit [Pseudonocardia dioxanivorans
CB1190]
Length=74
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/72 (64%), Positives = 51/72 (71%), Gaps = 2/72 (2%)
Query 13 THATVPVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEHLAGARQR 72
+ A PV LGYE RDEL EVVR LE GGL LD S+ LWERGE LA+RCEE LAGAR+R
Sbjct 2 SDARPPVESLGYEQARDELAEVVRTLEVGGLGLDESVALWERGEALARRCEEQLAGARER 61
Query 73 VSDVLAGDEAQN 84
V L DEA+
Sbjct 62 VEKAL--DEARE 71
>gi|19552245|ref|NP_600247.1| exodeoxyribonuclease VII small subunit [Corynebacterium glutamicum
ATCC 13032]
gi|62389910|ref|YP_225312.1| exodeoxyribonuclease VII small subunit [Corynebacterium glutamicum
ATCC 13032]
gi|145295165|ref|YP_001137986.1| exodeoxyribonuclease VII small subunit [Corynebacterium glutamicum
R]
gi|21323791|dbj|BAB98417.1| Exonuclease VII small subunit [Corynebacterium glutamicum ATCC
13032]
gi|41325246|emb|CAF19726.1| PUTATIVE EXODEOXYRIBONUCLEASE PROTEIN [Corynebacterium glutamicum
ATCC 13032]
gi|140845085|dbj|BAF54084.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344044437|gb|EGV40114.1| exodeoxyribonuclease VII small subunit [Corynebacterium glutamicum
S9114]
Length=81
Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 46/60 (77%), Gaps = 0/60 (0%)
Query 18 PVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEHLAGARQRVSDVL 77
PV+QL YE RDEL+E+V++LE G + LD SL+ WERGE LAKRCEEHLAGA RV L
Sbjct 18 PVAQLSYERARDELVEIVKILELGQMGLDESLKYWERGEALAKRCEEHLAGASARVEQAL 77
>gi|337290409|ref|YP_004629430.1| exodeoxyribonuclease small subunit [Corynebacterium ulcerans
BR-AD22]
gi|334696523|gb|AEG81320.1| exodeoxyribonuclease small subunit [Corynebacterium ulcerans
809]
gi|334698715|gb|AEG83511.1| exodeoxyribonuclease small subunit [Corynebacterium ulcerans
BR-AD22]
Length=96
Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/78 (57%), Positives = 50/78 (65%), Gaps = 1/78 (1%)
Query 1 MVCDPNGDDTGRTHATVPVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAK 60
M D G TG T + QL YE R+EL E+VR+LE G ++LD SL WERGE LAK
Sbjct 1 MNSDVIGHGTGEDSFTA-IEQLSYEQARNELAEIVRILELGQMNLDESLTYWERGEALAK 59
Query 61 RCEEHLAGARQRVSDVLA 78
RCEEHLAGA RV LA
Sbjct 60 RCEEHLAGAAHRVEQALA 77
>gi|213965519|ref|ZP_03393714.1| exodeoxyribonuclease VII, small subunit [Corynebacterium amycolatum
SK46]
gi|213951903|gb|EEB63290.1| exodeoxyribonuclease VII, small subunit [Corynebacterium amycolatum
SK46]
Length=96
Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/63 (64%), Positives = 45/63 (72%), Gaps = 0/63 (0%)
Query 17 VPVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEHLAGARQRVSDV 76
VPV L YE RD L+E V+LLE G + LD SL LWERGE LA+RCEEHLAGAR +V
Sbjct 18 VPVENLSYEQARDALVETVKLLELGQMSLDESLALWERGEALARRCEEHLAGARAKVEAA 77
Query 77 LAG 79
LA
Sbjct 78 LAS 80
>gi|68536537|ref|YP_251242.1| exodeoxyribonuclease VII small subunit [Corynebacterium jeikeium
K411]
gi|68264136|emb|CAI37624.1| exodeoxyribonuclease small subunit [Corynebacterium jeikeium
K411]
Length=95
Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/80 (49%), Positives = 51/80 (64%), Gaps = 0/80 (0%)
Query 6 NGDDTGRTHATVPVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEH 65
N D G P++QL YE RDEL+EVV++LE G + LD SL WERGE+LA CE++
Sbjct 10 NNTDNGEQQKFRPLNQLSYEQARDELVEVVKILELGQMSLDESLNYWERGEELAAYCEDY 69
Query 66 LAGARQRVSDVLAGDEAQNG 85
L GA +R+ L EA+N
Sbjct 70 LNGASKRIEQALQQREARNA 89
>gi|25027633|ref|NP_737687.1| exodeoxyribonuclease VII small subunit [Corynebacterium efficiens
YS-314]
gi|259506966|ref|ZP_05749866.1| exodeoxyribonuclease 7 small subunit (exodeoxyribonuclease VII
small subunit) (exonuclease VII small subunit) [Corynebacterium
efficiens YS-314]
gi|23492915|dbj|BAC17887.1| putative exodeoxyribonuclease, small subunit [Corynebacterium
efficiens YS-314]
gi|259165418|gb|EEW49972.1| exodeoxyribonuclease 7 small subunit (exodeoxyribonuclease VII
small subunit) (exonuclease VII small subunit) [Corynebacterium
efficiens YS-314]
Length=82
Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 46/65 (71%), Gaps = 0/65 (0%)
Query 18 PVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEHLAGARQRVSDVL 77
PV L YE RDEL+E+V++LE G + LD SLR WERGE LA+RCEEHLAGA +RV L
Sbjct 18 PVESLSYEQARDELVEIVKILELGQMGLDESLRYWERGESLARRCEEHLAGASKRVEQAL 77
Query 78 AGDEA 82
A
Sbjct 78 GNQPA 82
>gi|256374874|ref|YP_003098534.1| exodeoxyribonuclease VII, small subunit [Actinosynnema mirum
DSM 43827]
gi|255919177|gb|ACU34688.1| exodeoxyribonuclease VII, small subunit [Actinosynnema mirum
DSM 43827]
Length=69
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/63 (67%), Positives = 48/63 (77%), Gaps = 0/63 (0%)
Query 19 VSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEHLAGARQRVSDVLA 78
+S+ GYEA RDEL+EVVR LE GGL L+ SL LWERGE LAK CE HLAGAR+R+ LA
Sbjct 1 MSEPGYEAARDELVEVVRKLEAGGLSLEDSLALWERGEVLAKTCERHLAGARERIDQALA 60
Query 79 GDE 81
E
Sbjct 61 VSE 63
>gi|324997962|ref|ZP_08119074.1| exodeoxyribonuclease VII small subunit [Pseudonocardia sp. P1]
Length=78
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/67 (65%), Positives = 50/67 (75%), Gaps = 2/67 (2%)
Query 19 VSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEHLAGARQRVSDVLA 78
V LGYE RDEL+EVVR LE GGL LD S+ +WERGE LA RCE+ LAGAR R+ D LA
Sbjct 7 VDTLGYEQARDELVEVVRALEVGGLGLDESVAMWERGEALASRCEDQLAGARTRIEDRLA 66
Query 79 GDEAQNG 85
EA++G
Sbjct 67 --EAESG 71
>gi|296393507|ref|YP_003658391.1| exodeoxyribonuclease VII small subunit [Segniliparus rotundus
DSM 44985]
gi|296180654|gb|ADG97560.1| exodeoxyribonuclease VII, small subunit [Segniliparus rotundus
DSM 44985]
Length=82
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/58 (68%), Positives = 45/58 (78%), Gaps = 0/58 (0%)
Query 16 TVPVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEHLAGARQRV 73
T P +LGYE R+EL++VVR LEQGGL LD S+ LWERGE L KRCEEHL GA +RV
Sbjct 4 TRPTQELGYEEAREELVDVVRQLEQGGLSLDVSVALWERGEALVKRCEEHLDGASKRV 61
>gi|317506617|ref|ZP_07964409.1| exodeoxyribonuclease VII [Segniliparus rugosus ATCC BAA-974]
gi|316255126|gb|EFV14404.1| exodeoxyribonuclease VII [Segniliparus rugosus ATCC BAA-974]
Length=76
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/56 (72%), Positives = 45/56 (81%), Gaps = 0/56 (0%)
Query 22 LGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEHLAGARQRVSDVL 77
LGYE R+EL++VVR LEQGGL LDAS+ LWERGE L KRCEEHL GA +RV VL
Sbjct 4 LGYEQAREELVDVVRQLEQGGLSLDASVALWERGEALVKRCEEHLDGAAKRVDAVL 59
>gi|333989697|ref|YP_004522311.1| exodeoxyribonuclease [Mycobacterium sp. JDM601]
gi|333485665|gb|AEF35057.1| exodeoxyribonuclease [Mycobacterium sp. JDM601]
Length=54
Score = 77.0 bits (188), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/52 (79%), Positives = 45/52 (87%), Gaps = 3/52 (5%)
Query 34 VVRLLEQGGLDLDASLRLWERGEQLAKRCEEHLAGARQRVSDVLAGDEAQNG 85
+V+ LEQGGLDLDASL LWERGEQLAKRCEEHLAGAR+RV D LA A+NG
Sbjct 1 MVQRLEQGGLDLDASLSLWERGEQLAKRCEEHLAGARRRVQDALA---AENG 49
>gi|227501576|ref|ZP_03931625.1| exodeoxyribonuclease VII small subunit [Corynebacterium accolens
ATCC 49725]
gi|227077601|gb|EEI15564.1| exodeoxyribonuclease VII small subunit [Corynebacterium accolens
ATCC 49725]
Length=92
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/63 (58%), Positives = 44/63 (70%), Gaps = 0/63 (0%)
Query 15 ATVPVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEHLAGARQRVS 74
A PV +L YE RDEL+E V++LE G + LD SL+ WERGE LA+ CE HL GA +RV
Sbjct 15 AFTPVEELSYEQARDELIETVKILELGQMGLDESLKYWERGEALARTCESHLDGASKRVE 74
Query 75 DVL 77
D L
Sbjct 75 DAL 77
>gi|306835736|ref|ZP_07468740.1| exodeoxyribonuclease VII small subunit [Corynebacterium accolens
ATCC 49726]
gi|304568367|gb|EFM43928.1| exodeoxyribonuclease VII small subunit [Corynebacterium accolens
ATCC 49726]
Length=92
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/63 (58%), Positives = 44/63 (70%), Gaps = 0/63 (0%)
Query 15 ATVPVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEHLAGARQRVS 74
A PV +L YE RDEL+E V++LE G + LD SL+ WERGE LA+ CE HL GA +RV
Sbjct 15 AFTPVEELSYEQARDELIETVKILELGQMGLDESLKYWERGEALARTCESHLDGASKRVE 74
Query 75 DVL 77
D L
Sbjct 75 DAL 77
>gi|227487857|ref|ZP_03918173.1| exodeoxyribonuclease VII small subunit [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227542498|ref|ZP_03972547.1| exodeoxyribonuclease VII small subunit [Corynebacterium glucuronolyticum
ATCC 51866]
gi|227092184|gb|EEI27496.1| exodeoxyribonuclease VII small subunit [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227181696|gb|EEI62668.1| exodeoxyribonuclease VII small subunit [Corynebacterium glucuronolyticum
ATCC 51866]
Length=86
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/64 (60%), Positives = 43/64 (68%), Gaps = 0/64 (0%)
Query 18 PVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEHLAGARQRVSDVL 77
PV L YE R EL+ VVR+LE G + LD SL WERGE LAKRCEEHL GAR ++ VL
Sbjct 16 PVENLSYEEARSELVNVVRVLELGQMGLDESLAYWERGEALAKRCEEHLNGARNKIEAVL 75
Query 78 AGDE 81
E
Sbjct 76 GTSE 79
>gi|29829754|ref|NP_824388.1| exodeoxyribonuclease VII small subunit [Streptomyces avermitilis
MA-4680]
gi|67460382|sp|Q82IE6.1|EX7S_STRAW RecName: Full=Exodeoxyribonuclease 7 small subunit; AltName:
Full=Exodeoxyribonuclease VII small subunit; Short=Exonuclease
VII small subunit
gi|29606863|dbj|BAC70923.1| putative exoribonuclease small subunit [Streptomyces avermitilis
MA-4680]
Length=80
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/72 (57%), Positives = 48/72 (67%), Gaps = 0/72 (0%)
Query 10 TGRTHATVPVSQLGYEACRDELMEVVRLLEQGGLDLDASLRLWERGEQLAKRCEEHLAGA 69
T RT T + LGYE RDEL+EVVR LE GG L+ SL LWERGE+LAK C L GA
Sbjct 2 TSRTDETANATALGYEQARDELIEVVRRLEAGGTTLEESLALWERGEELAKVCRTWLEGA 61
Query 70 RQRVSDVLAGDE 81
R+R+ LA +E
Sbjct 62 RKRLDAALAEEE 73
Lambda K H
0.316 0.135 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 131466506940
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40