BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1111c Length=327 Score E Sequences producing significant alignments: (Bits) Value gi|308231739|ref|ZP_07663917.1| hypothetical protein TMAG_03724 ... 659 0.0 gi|31792304|ref|NP_854797.1| hypothetical protein Mb1141c [Mycob... 659 0.0 gi|289442541|ref|ZP_06432285.1| conserved hypothetical protein [... 656 0.0 gi|15840548|ref|NP_335585.1| hypothetical protein MT1142 [Mycoba... 655 0.0 gi|340626125|ref|YP_004744577.1| hypothetical protein MCAN_11211... 652 0.0 gi|339297745|gb|AEJ49855.1| hypothetical protein CCDC5180_1018 [... 614 7e-174 gi|296169977|ref|ZP_06851584.1| conserved hypothetical protein [... 299 4e-79 gi|15828042|ref|NP_302305.1| integral membrane protein [Mycobact... 281 1e-73 gi|4539093|emb|CAB39811.1| putative membrane protein [Mycobacter... 280 3e-73 gi|41408781|ref|NP_961617.1| hypothetical protein MAP2683 [Mycob... 271 1e-70 gi|336458726|gb|EGO37686.1| hypothetical protein MAPs_10090 [Myc... 259 4e-67 gi|118616060|ref|YP_904392.1| hypothetical protein MUL_0167 [Myc... 231 1e-58 gi|183984325|ref|YP_001852616.1| hypothetical protein MMAR_4354 ... 231 2e-58 gi|108801067|ref|YP_641264.1| hypothetical protein Mmcs_4103 [My... 226 3e-57 gi|342861700|ref|ZP_08718346.1| hypothetical protein MCOL_22541 ... 222 5e-56 gi|126436905|ref|YP_001072596.1| hypothetical protein Mjls_4334 ... 210 2e-52 gi|120405578|ref|YP_955407.1| hypothetical protein Mvan_4626 [My... 209 5e-52 gi|240171090|ref|ZP_04749749.1| hypothetical protein MkanA1_1739... 206 5e-51 gi|333989701|ref|YP_004522315.1| hypothetical protein JDM601_106... 197 2e-48 gi|145222669|ref|YP_001133347.1| hypothetical protein Mflv_2081 ... 190 4e-46 gi|315443131|ref|YP_004076010.1| hypothetical protein Mspyr1_150... 189 4e-46 gi|118462991|ref|YP_880477.1| hypothetical protein MAV_1231 [Myc... 185 9e-45 gi|118472676|ref|YP_889469.1| hypothetical protein MSMEG_5223 [M... 179 6e-43 gi|254774115|ref|ZP_05215631.1| hypothetical protein MaviaA2_055... 178 1e-42 gi|254819701|ref|ZP_05224702.1| hypothetical protein MintA_07249... 174 2e-41 gi|169628351|ref|YP_001702000.1| hypothetical protein MAB_1258c ... 147 2e-33 gi|226365342|ref|YP_002783125.1| hypothetical protein ROP_59330 ... 136 4e-30 gi|111022834|ref|YP_705806.1| hypothetical protein RHA1_ro05871 ... 136 5e-30 gi|226307720|ref|YP_002767680.1| hypothetical protein RER_42330 ... 134 1e-29 gi|229493916|ref|ZP_04387688.1| conserved hypothetical protein [... 134 1e-29 gi|312138757|ref|YP_004006093.1| integral membrane protein [Rhod... 130 3e-28 gi|54026768|ref|YP_121010.1| hypothetical protein nfa47940 [Noca... 120 4e-25 gi|333921057|ref|YP_004494638.1| hypothetical protein AS9A_3397 ... 110 2e-22 gi|325676550|ref|ZP_08156228.1| hypothetical protein HMPREF0724_... 110 3e-22 gi|296393511|ref|YP_003658395.1| hypothetical protein Srot_1091 ... 106 4e-21 gi|343924757|ref|ZP_08764296.1| hypothetical protein GOALK_026_0... 100 3e-19 gi|326381373|ref|ZP_08203067.1| hypothetical protein SCNU_00440 ... 96.3 6e-18 gi|317506623|ref|ZP_07964414.1| hypothetical protein HMPREF9336_... 89.7 6e-16 gi|302530081|ref|ZP_07282423.1| predicted protein [Streptomyces ... 85.9 9e-15 gi|262203281|ref|YP_003274489.1| hypothetical protein Gbro_3398 ... 85.1 1e-14 gi|340531538|gb|AEK46743.1| hypothetical protein RAM_41380 [Amyc... 77.4 3e-12 gi|257057115|ref|YP_003134947.1| hypothetical protein Svir_31470... 76.3 6e-12 gi|319950223|ref|ZP_08024150.1| integral membrane protein [Dietz... 74.3 3e-11 gi|300789867|ref|YP_003770158.1| hypothetical protein AMED_8053 ... 73.2 6e-11 gi|305681791|ref|ZP_07404595.1| conserved hypothetical protein [... 72.4 9e-11 gi|134097538|ref|YP_001103199.1| hypothetical protein SACE_0940 ... 64.3 3e-08 gi|296118158|ref|ZP_06836739.1| putative membrane protein [Coryn... 61.6 2e-07 gi|227487860|ref|ZP_03918176.1| conserved hypothetical protein [... 57.4 3e-06 gi|291009499|ref|ZP_06567472.1| hypothetical protein SeryN2_3370... 57.0 4e-06 gi|258654506|ref|YP_003203662.1| hypothetical protein Namu_4386 ... 53.1 6e-05 >gi|308231739|ref|ZP_07663917.1| hypothetical protein TMAG_03724 [Mycobacterium tuberculosis SUMu001] gi|308370060|ref|ZP_07666860.1| hypothetical protein TMBG_01499 [Mycobacterium tuberculosis SUMu002] gi|308370620|ref|ZP_07666980.1| hypothetical protein TMCG_00736 [Mycobacterium tuberculosis SUMu003] 19 more sequence titles Length=365 Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/327 (100%), Positives = 327/327 (100%), Gaps = 0/327 (0%) Query 1 VSAQRARSAVQASHRSIHPHIPGVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCY 60 VSAQRARSAVQASHRSIHPHIPGVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCY Sbjct 39 VSAQRARSAVQASHRSIHPHIPGVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCY 98 Query 61 IAGCVGAVLAVRQSDLFTALVQPPLILFCAVPGAYWLFHGGTIGKFKDLLINCGYSLIER 120 IAGCVGAVLAVRQSDLFTALVQPPLILFCAVPGAYWLFHGGTIGKFKDLLINCGYSLIER Sbjct 99 IAGCVGAVLAVRQSDLFTALVQPPLILFCAVPGAYWLFHGGTIGKFKDLLINCGYSLIER 158 Query 121 FPLMLGTAAGVLLIGLVRWYLGTALFDSIARKLSSLMTGDSDDDGGRRSAQRPARTRSRH 180 FPLMLGTAAGVLLIGLVRWYLGTALFDSIARKLSSLMTGDSDDDGGRRSAQRPARTRSRH Sbjct 159 FPLMLGTAAGVLLIGLVRWYLGTALFDSIARKLSSLMTGDSDDDGGRRSAQRPARTRSRH 218 Query 181 ARPPSEDNREPIAERRSRRRPRPQNDPHPRRNAHERPAPRSSRFDSYRSYQPSEPSGPAE 240 ARPPSEDNREPIAERRSRRRPRPQNDPHPRRNAHERPAPRSSRFDSYRSYQPSEPSGPAE Sbjct 219 ARPPSEDNREPIAERRSRRRPRPQNDPHPRRNAHERPAPRSSRFDSYRSYQPSEPSGPAE 278 Query 241 PVNRYERRGARYQPYARYEPTYEPQRRRARPSEPTNPTHHPISQVRYRGSATRDARRDNY 300 PVNRYERRGARYQPYARYEPTYEPQRRRARPSEPTNPTHHPISQVRYRGSATRDARRDNY Sbjct 279 PVNRYERRGARYQPYARYEPTYEPQRRRARPSEPTNPTHHPISQVRYRGSATRDARRDNY 338 Query 301 REEQRFDRRDRSRAPRRPPAESWEYDV 327 REEQRFDRRDRSRAPRRPPAESWEYDV Sbjct 339 REEQRFDRRDRSRAPRRPPAESWEYDV 365 >gi|31792304|ref|NP_854797.1| hypothetical protein Mb1141c [Mycobacterium bovis AF2122/97] gi|57116830|ref|NP_215627.2| hypothetical protein Rv1111c [Mycobacterium tuberculosis H37Rv] gi|121637042|ref|YP_977265.1| hypothetical protein BCG_1171c [Mycobacterium bovis BCG str. Pasteur 1173P2] 44 more sequence titles Length=327 Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/327 (99%), Positives = 327/327 (100%), Gaps = 0/327 (0%) Query 1 VSAQRARSAVQASHRSIHPHIPGVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCY 60 +SAQRARSAVQASHRSIHPHIPGVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCY Sbjct 1 MSAQRARSAVQASHRSIHPHIPGVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCY 60 Query 61 IAGCVGAVLAVRQSDLFTALVQPPLILFCAVPGAYWLFHGGTIGKFKDLLINCGYSLIER 120 IAGCVGAVLAVRQSDLFTALVQPPLILFCAVPGAYWLFHGGTIGKFKDLLINCGYSLIER Sbjct 61 IAGCVGAVLAVRQSDLFTALVQPPLILFCAVPGAYWLFHGGTIGKFKDLLINCGYSLIER 120 Query 121 FPLMLGTAAGVLLIGLVRWYLGTALFDSIARKLSSLMTGDSDDDGGRRSAQRPARTRSRH 180 FPLMLGTAAGVLLIGLVRWYLGTALFDSIARKLSSLMTGDSDDDGGRRSAQRPARTRSRH Sbjct 121 FPLMLGTAAGVLLIGLVRWYLGTALFDSIARKLSSLMTGDSDDDGGRRSAQRPARTRSRH 180 Query 181 ARPPSEDNREPIAERRSRRRPRPQNDPHPRRNAHERPAPRSSRFDSYRSYQPSEPSGPAE 240 ARPPSEDNREPIAERRSRRRPRPQNDPHPRRNAHERPAPRSSRFDSYRSYQPSEPSGPAE Sbjct 181 ARPPSEDNREPIAERRSRRRPRPQNDPHPRRNAHERPAPRSSRFDSYRSYQPSEPSGPAE 240 Query 241 PVNRYERRGARYQPYARYEPTYEPQRRRARPSEPTNPTHHPISQVRYRGSATRDARRDNY 300 PVNRYERRGARYQPYARYEPTYEPQRRRARPSEPTNPTHHPISQVRYRGSATRDARRDNY Sbjct 241 PVNRYERRGARYQPYARYEPTYEPQRRRARPSEPTNPTHHPISQVRYRGSATRDARRDNY 300 Query 301 REEQRFDRRDRSRAPRRPPAESWEYDV 327 REEQRFDRRDRSRAPRRPPAESWEYDV Sbjct 301 REEQRFDRRDRSRAPRRPPAESWEYDV 327 >gi|289442541|ref|ZP_06432285.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289569104|ref|ZP_06449331.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289749647|ref|ZP_06509025.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289753177|ref|ZP_06512555.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|289415460|gb|EFD12700.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289542858|gb|EFD46506.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289690234|gb|EFD57663.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289693764|gb|EFD61193.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] Length=327 Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/327 (99%), Positives = 326/327 (99%), Gaps = 0/327 (0%) Query 1 VSAQRARSAVQASHRSIHPHIPGVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCY 60 +SAQRARSAVQASHRSIHPHIPGVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCY Sbjct 1 MSAQRARSAVQASHRSIHPHIPGVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCY 60 Query 61 IAGCVGAVLAVRQSDLFTALVQPPLILFCAVPGAYWLFHGGTIGKFKDLLINCGYSLIER 120 IAGCVGAVLAVRQSDLFTALVQPPLILFCAVPGAYWLFHGGTIGKFKDLLINCGYSLIER Sbjct 61 IAGCVGAVLAVRQSDLFTALVQPPLILFCAVPGAYWLFHGGTIGKFKDLLINCGYSLIER 120 Query 121 FPLMLGTAAGVLLIGLVRWYLGTALFDSIARKLSSLMTGDSDDDGGRRSAQRPARTRSRH 180 FPLMLGTAAGVLLIGLVRWYLGTALFDSIARKLSSLMTGDSDDDGGRRSAQRPARTRSRH Sbjct 121 FPLMLGTAAGVLLIGLVRWYLGTALFDSIARKLSSLMTGDSDDDGGRRSAQRPARTRSRH 180 Query 181 ARPPSEDNREPIAERRSRRRPRPQNDPHPRRNAHERPAPRSSRFDSYRSYQPSEPSGPAE 240 ARPPSEDNREPIAERRSRRRPRPQNDPHPRRNAHERPAPRSSRFDSYRSYQPSEPSGPAE Sbjct 181 ARPPSEDNREPIAERRSRRRPRPQNDPHPRRNAHERPAPRSSRFDSYRSYQPSEPSGPAE 240 Query 241 PVNRYERRGARYQPYARYEPTYEPQRRRARPSEPTNPTHHPISQVRYRGSATRDARRDNY 300 PVNRYERRGARYQPYARYEPTYE QRRRARPSEPTNPTHHPISQVRYRGSATRDARRDNY Sbjct 241 PVNRYERRGARYQPYARYEPTYESQRRRARPSEPTNPTHHPISQVRYRGSATRDARRDNY 300 Query 301 REEQRFDRRDRSRAPRRPPAESWEYDV 327 REEQRFDRRDRSRAPRRPPAESWEYDV Sbjct 301 REEQRFDRRDRSRAPRRPPAESWEYDV 327 >gi|15840548|ref|NP_335585.1| hypothetical protein MT1142 [Mycobacterium tuberculosis CDC1551] gi|13880726|gb|AAK45399.1| hypothetical protein MT1142 [Mycobacterium tuberculosis CDC1551] gi|323720392|gb|EGB29486.1| hypothetical protein TMMG_01802 [Mycobacterium tuberculosis CDC1551A] Length=327 Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/327 (99%), Positives = 326/327 (99%), Gaps = 0/327 (0%) Query 1 VSAQRARSAVQASHRSIHPHIPGVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCY 60 +SAQRARSAVQASHRSIHPHIPGVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCY Sbjct 1 MSAQRARSAVQASHRSIHPHIPGVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCY 60 Query 61 IAGCVGAVLAVRQSDLFTALVQPPLILFCAVPGAYWLFHGGTIGKFKDLLINCGYSLIER 120 IAGCVGAVLAVRQSDLFTALVQPPLILFCAVPGAYWLFHGGTIGKFKDLLINCGYSLIER Sbjct 61 IAGCVGAVLAVRQSDLFTALVQPPLILFCAVPGAYWLFHGGTIGKFKDLLINCGYSLIER 120 Query 121 FPLMLGTAAGVLLIGLVRWYLGTALFDSIARKLSSLMTGDSDDDGGRRSAQRPARTRSRH 180 FPLMLGTAAGVLLIGLVRWYLGTALFDSIARKLSSLMTGDSDDDGGRRSAQRPARTRSRH Sbjct 121 FPLMLGTAAGVLLIGLVRWYLGTALFDSIARKLSSLMTGDSDDDGGRRSAQRPARTRSRH 180 Query 181 ARPPSEDNREPIAERRSRRRPRPQNDPHPRRNAHERPAPRSSRFDSYRSYQPSEPSGPAE 240 ARPPSEDNREPIAERRSRRRPRPQNDPHPR NAHERPAPRSSRFDSYRSYQPSEPSGPAE Sbjct 181 ARPPSEDNREPIAERRSRRRPRPQNDPHPRGNAHERPAPRSSRFDSYRSYQPSEPSGPAE 240 Query 241 PVNRYERRGARYQPYARYEPTYEPQRRRARPSEPTNPTHHPISQVRYRGSATRDARRDNY 300 PVNRYERRGARYQPYARYEPTYEPQRRRARPSEPTNPTHHPISQVRYRGSATRDARRDNY Sbjct 241 PVNRYERRGARYQPYARYEPTYEPQRRRARPSEPTNPTHHPISQVRYRGSATRDARRDNY 300 Query 301 REEQRFDRRDRSRAPRRPPAESWEYDV 327 REEQRFDRRDRSRAPRRPPAESWEYDV Sbjct 301 REEQRFDRRDRSRAPRRPPAESWEYDV 327 >gi|340626125|ref|YP_004744577.1| hypothetical protein MCAN_11211 [Mycobacterium canettii CIPT 140010059] gi|340004315|emb|CCC43457.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059] Length=327 Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/327 (99%), Positives = 325/327 (99%), Gaps = 0/327 (0%) Query 1 VSAQRARSAVQASHRSIHPHIPGVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCY 60 +SAQRARSAVQASHRSIHPHIPGVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCY Sbjct 1 MSAQRARSAVQASHRSIHPHIPGVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCY 60 Query 61 IAGCVGAVLAVRQSDLFTALVQPPLILFCAVPGAYWLFHGGTIGKFKDLLINCGYSLIER 120 IAGCVGAVLAVRQSDLFTALVQPPLILFCAVPGAYWLFHGGTIGKFKDLLINCGY LIER Sbjct 61 IAGCVGAVLAVRQSDLFTALVQPPLILFCAVPGAYWLFHGGTIGKFKDLLINCGYPLIER 120 Query 121 FPLMLGTAAGVLLIGLVRWYLGTALFDSIARKLSSLMTGDSDDDGGRRSAQRPARTRSRH 180 FPLMLGTAAGVLLIGLVRWYLGTALFDSIARKLSSLMTGDSDDDGGRRSAQRPARTRSRH Sbjct 121 FPLMLGTAAGVLLIGLVRWYLGTALFDSIARKLSSLMTGDSDDDGGRRSAQRPARTRSRH 180 Query 181 ARPPSEDNREPIAERRSRRRPRPQNDPHPRRNAHERPAPRSSRFDSYRSYQPSEPSGPAE 240 ARPPSEDNREPIAERRSRRRPRPQNDPHPRRNAHERPAPRSSRFDSYRSYQPSEPS PAE Sbjct 181 ARPPSEDNREPIAERRSRRRPRPQNDPHPRRNAHERPAPRSSRFDSYRSYQPSEPSEPAE 240 Query 241 PVNRYERRGARYQPYARYEPTYEPQRRRARPSEPTNPTHHPISQVRYRGSATRDARRDNY 300 PVNRYERRGARYQPYARY+PTYEPQRRRARPSEPTNPTHHPISQVRYRGSATRDARRDNY Sbjct 241 PVNRYERRGARYQPYARYQPTYEPQRRRARPSEPTNPTHHPISQVRYRGSATRDARRDNY 300 Query 301 REEQRFDRRDRSRAPRRPPAESWEYDV 327 REEQRFDRRDRSRAPRRPPAESWEYDV Sbjct 301 REEQRFDRRDRSRAPRRPPAESWEYDV 327 >gi|339297745|gb|AEJ49855.1| hypothetical protein CCDC5180_1018 [Mycobacterium tuberculosis CCDC5180] Length=304 Score = 614 bits (1583), Expect = 7e-174, Method: Compositional matrix adjust. Identities = 303/304 (99%), Positives = 304/304 (100%), Gaps = 0/304 (0%) Query 24 VPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCYIAGCVGAVLAVRQSDLFTALVQP 83 +PWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCYIAGCVGAVLAVRQSDLFTALVQP Sbjct 1 MPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCYIAGCVGAVLAVRQSDLFTALVQP 60 Query 84 PLILFCAVPGAYWLFHGGTIGKFKDLLINCGYSLIERFPLMLGTAAGVLLIGLVRWYLGT 143 PLILFCAVPGAYWLFHGGTIGKFKDLLINCGYSLIERFPLMLGTAAGVLLIGLVRWYLGT Sbjct 61 PLILFCAVPGAYWLFHGGTIGKFKDLLINCGYSLIERFPLMLGTAAGVLLIGLVRWYLGT 120 Query 144 ALFDSIARKLSSLMTGDSDDDGGRRSAQRPARTRSRHARPPSEDNREPIAERRSRRRPRP 203 ALFDSIARKLSSLMTGDSDDDGGRRSAQRPARTRSRHARPPSEDNREPIAERRSRRRPRP Sbjct 121 ALFDSIARKLSSLMTGDSDDDGGRRSAQRPARTRSRHARPPSEDNREPIAERRSRRRPRP 180 Query 204 QNDPHPRRNAHERPAPRSSRFDSYRSYQPSEPSGPAEPVNRYERRGARYQPYARYEPTYE 263 QNDPHPRRNAHERPAPRSSRFDSYRSYQPSEPSGPAEPVNRYERRGARYQPYARYEPTYE Sbjct 181 QNDPHPRRNAHERPAPRSSRFDSYRSYQPSEPSGPAEPVNRYERRGARYQPYARYEPTYE 240 Query 264 PQRRRARPSEPTNPTHHPISQVRYRGSATRDARRDNYREEQRFDRRDRSRAPRRPPAESW 323 PQRRRARPSEPTNPTHHPISQVRYRGSATRDARRDNYREEQRFDRRDRSRAPRRPPAESW Sbjct 241 PQRRRARPSEPTNPTHHPISQVRYRGSATRDARRDNYREEQRFDRRDRSRAPRRPPAESW 300 Query 324 EYDV 327 EYDV Sbjct 301 EYDV 304 >gi|296169977|ref|ZP_06851584.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895381|gb|EFG75087.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=389 Score = 299 bits (765), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 195/407 (48%), Positives = 221/407 (55%), Gaps = 107/407 (26%) Query 10 VQASHRSIHPHIPGVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCYIAGCVGAVL 69 ++ SHRSIHP IPGVPW+AA+L AVTATAIGY IDAG HK LT VF G YIAGCV AVL Sbjct 1 MEPSHRSIHPDIPGVPWYAALLFAVTATAIGYGIDAG--HKELTHVFAGFYIAGCVAAVL 58 Query 70 AVRQSDLFTALVQPPLILFCAVPGAYWLFHGGTIGKFKDLLINCGYSLIERFPLMLGTAA 129 AVRQ LFTA++QPPLILFCAVPGAYWLFH G +G KDLLINCGY LIERFPLMLGTA Sbjct 59 AVRQDGLFTAIIQPPLILFCAVPGAYWLFHDGKVGHLKDLLINCGYPLIERFPLMLGTAG 118 Query 130 GVLLIGLVRWYLGT--------------------ALFDSIARKLSSLM-------TGDSD 162 VLLIGL RWY G ++ + KL +++ TGD D Sbjct 119 IVLLIGLTRWYFGMSHQTTSAPNAPDEAPPSDVKSVVSGVVAKLQAMLRAESGRETGDDD 178 Query 163 DDG-----------------------GRRSAQRPARTRSRHARPPSEDNREPIAERRSRR 199 D G RSA R AR SR R +D E ERR R Sbjct 179 ADEAPPRKARAGRGAASSSRARRTARGDRSASRSARAHSRRTRETLDDAGE-AGERRPNR 237 Query 200 R----------------------------PRPQN------DPHPRRNAHERP--APRSSR 223 R PR Q+ +P RR+ +ERP PRSSR Sbjct 238 RGSSAARDYDTAEPPRRSRRRPRPDGDLDPRGQSPRESRREPRTRRSPYERPYEQPRSSR 297 Query 224 FDSYRSYQPSEPSGPAEPVNRYERRGARYQPYARYEPTYEPQRRRARPSEPTNPTHHPIS 283 FD Y Y P P P + RY Y RYEP YEP+RRR P+ N THHPIS Sbjct 298 FDGYDRYDP--PGAPEQ--------FGRYDSYDRYEPAYEPRRRRPAPNG-NNGTHHPIS 346 Query 284 QVRYRGSATRDARRDNYREEQRFDRRDRSRA---PRRPPAESWEYDV 327 QVRYRG+ D E R +RR+RSRA P+RP A+SWEYDV Sbjct 347 QVRYRGAGA----SDEPAAEPRPERRNRSRAYGRPQRPSADSWEYDV 389 >gi|15828042|ref|NP_302305.1| integral membrane protein [Mycobacterium leprae TN] gi|221230519|ref|YP_002503935.1| putative integral membrane protein [Mycobacterium leprae Br4923] gi|13093595|emb|CAC30892.1| probable integral membrane protein [Mycobacterium leprae] gi|219933626|emb|CAR72034.1| probable integral membrane protein [Mycobacterium leprae Br4923] Length=410 Score = 281 bits (718), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 185/397 (47%), Positives = 224/397 (57%), Gaps = 88/397 (22%) Query 1 VSAQRARSAVQASHRSIHPHIPGVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCY 60 VS Q+ARS V++++RSI P+IPGVPWWAA+LIA TA+AIGYAIDAG + LT VFTG Y Sbjct 32 VSKQQARSTVESTYRSILPNIPGVPWWAALLIATTASAIGYAIDAG--NTDLTTVFTGFY 89 Query 61 IAGCVGAVLAVRQSDLFTALVQPPLILFCAVPGAYWLFHGGTIGKFKDLLINCGYSLIER 120 I GCV AVLAVRQS LFTA++QPPLILFCAVP AYWLFHG I KDLLINCGY LIER Sbjct 90 ITGCVAAVLAVRQSGLFTAVIQPPLILFCAVPAAYWLFHGSKIKSLKDLLINCGYPLIER 149 Query 121 FPLMLGTAAGVLLIGLVRWYL--------GTALFDSIARKLSSLMTGDS----------D 162 FPLMLGTA VLLIGLVRW+ + D K +SL++G + Sbjct 150 FPLMLGTAGSVLLIGLVRWFFQLMYRTTASSNSEDDTVSKPNSLISGITAVLNSILCIYS 209 Query 163 DDGGRRSAQRPARTRSRHARPP------SEDNR-----------------EPIAE----- 194 +D R+ Q A T H+ PP + DNR EP+ E Sbjct 210 NDQNHRANQDTADTELMHSDPPLRTRQTARDNRSARTHSGQARRVVEYTSEPLVEPWQHS 269 Query 195 -----------------RRSRRRPRPQNDPHPRRNAHERPAPRSSRFDSY--RS--YQ-P 232 RRSRR+P PQ+DP R PR R D+Y RS Y+ P Sbjct 270 SQRSSEQARDFDAGESPRRSRRQPTPQSDPELRSQ-----PPREIRRDAYGHRSGPYEWP 324 Query 233 SEPSGPAEPVNRYERRG--ARYQPYARYEPTYEPQRRRARPSEPTNPTHHPISQVRYRGS 290 + S EP RY++ G + + + Y+ RRRA P P + +PISQVRYRGS Sbjct 325 TNHSSHLEPYRRYKQPGPPEHFTEHGQLYERYKQPRRRATP--PRASSVNPISQVRYRGS 382 Query 291 ATRDARRDNYREEQRFDRRDRSRAPRRPPAESWEYDV 327 RD + R DR+ RS+ PRRP ESWE+DV Sbjct 383 TARD--------DPRVDRQ-RSQTPRRPVTESWEFDV 410 >gi|4539093|emb|CAB39811.1| putative membrane protein [Mycobacterium leprae] Length=379 Score = 280 bits (715), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 184/397 (47%), Positives = 224/397 (57%), Gaps = 88/397 (22%) Query 1 VSAQRARSAVQASHRSIHPHIPGVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCY 60 +S Q+ARS V++++RSI P+IPGVPWWAA+LIA TA+AIGYAIDAG + LT VFTG Y Sbjct 1 MSKQQARSTVESTYRSILPNIPGVPWWAALLIATTASAIGYAIDAG--NTDLTTVFTGFY 58 Query 61 IAGCVGAVLAVRQSDLFTALVQPPLILFCAVPGAYWLFHGGTIGKFKDLLINCGYSLIER 120 I GCV AVLAVRQS LFTA++QPPLILFCAVP AYWLFHG I KDLLINCGY LIER Sbjct 59 ITGCVAAVLAVRQSGLFTAVIQPPLILFCAVPAAYWLFHGSKIKSLKDLLINCGYPLIER 118 Query 121 FPLMLGTAAGVLLIGLVRWYL--------GTALFDSIARKLSSLMTGDS----------D 162 FPLMLGTA VLLIGLVRW+ + D K +SL++G + Sbjct 119 FPLMLGTAGSVLLIGLVRWFFQLMYRTTASSNSEDDTVSKPNSLISGITAVLNSILCIYS 178 Query 163 DDGGRRSAQRPARTRSRHARPP------SEDNR-----------------EPIAE----- 194 +D R+ Q A T H+ PP + DNR EP+ E Sbjct 179 NDQNHRANQDTADTELMHSDPPLRTRQTARDNRSARTHSGQARRVVEYTSEPLVEPWQHS 238 Query 195 -----------------RRSRRRPRPQNDPHPRRNAHERPAPRSSRFDSY--RS--YQ-P 232 RRSRR+P PQ+DP R PR R D+Y RS Y+ P Sbjct 239 SQRSSEQARDFDAGESPRRSRRQPTPQSDPELRSQ-----PPREIRRDAYGHRSGPYEWP 293 Query 233 SEPSGPAEPVNRYERRG--ARYQPYARYEPTYEPQRRRARPSEPTNPTHHPISQVRYRGS 290 + S EP RY++ G + + + Y+ RRRA P P + +PISQVRYRGS Sbjct 294 TNHSSHLEPYRRYKQPGPPEHFTEHGQLYERYKQPRRRATP--PRASSVNPISQVRYRGS 351 Query 291 ATRDARRDNYREEQRFDRRDRSRAPRRPPAESWEYDV 327 RD + R DR+ RS+ PRRP ESWE+DV Sbjct 352 TARD--------DPRVDRQ-RSQTPRRPVTESWEFDV 379 >gi|41408781|ref|NP_961617.1| hypothetical protein MAP2683 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397139|gb|AAS05000.1| hypothetical protein MAP_2683 [Mycobacterium avium subsp. paratuberculosis K-10] Length=402 Score = 271 bits (693), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 193/424 (46%), Positives = 223/424 (53%), Gaps = 121/424 (28%) Query 1 VSAQRARSAVQASHRSIHPHIPGVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCY 60 +SAQRA S V+++H SIHP+IPG+PW+AA+L+AVTATAIGY IDAG HK LT VF G Y Sbjct 1 MSAQRASSTVESAHHSIHPNIPGLPWYAAVLVAVTATAIGYGIDAG--HKELTHVFAGFY 58 Query 61 IAGCVGAVLAVRQSDLFTALVQPPLILFCAVPGAYWLFHGGTIGKFKDLLINCGYSLIER 120 IAGCV AVLAVRQ +FT ++QPPLILFCAVPGAYWLFH +G+ KDLLINCGY LIER Sbjct 59 IAGCVAAVLAVRQDGIFTTIIQPPLILFCAVPGAYWLFHDAKVGRLKDLLINCGYPLIER 118 Query 121 FPLMLGTAAGVLLIGLVRWYLG----------------------TALFDSIARKLSSLMT 158 FPLMLGTA VL IGLVRWY G +L + K+ + + Sbjct 119 FPLMLGTAGAVLAIGLVRWYFGHGQRSTTAAGSDDAAAGPSVDVQSLVGGLVAKVRAALH 178 Query 159 GDSDDDGGRRSAQ------------------------RPARTRSRHARPPSEDNREPIAE 194 DSD D SAQ +RTRSRHARPP +D EP AE Sbjct 179 PDSDGDTTEESAQRRRTRRSGSSSRTRRTARSTRSSASSSRTRSRHARPPLDDAAEP-AE 237 Query 195 RRSRRR--------------------------------PRPQNDPHPRRNA--------- 213 R R+R PRP DP R Sbjct 238 RPERQRRATRRSAASARNYDTAGRNYDAAEPPRRTRRRPRPDADPELRGQTPREPRREPR 297 Query 214 -----HERPAPRSSRFDSYRSYQPSEPSGPAEPVNRYERRGARYQPYARYEPTYEPQRRR 268 +ERP PRSSRFD Y PSGP E + RY+ +RY+ P R Sbjct 298 PRRSPYERPVPRSSRFDGY-----DPPSGP-ENLGRYD---------SRYDTPEPPYEPR 342 Query 269 ARPSEPT--NPTHHPISQVRYRGSATRDARRDNYREEQRFDRRDRSRAP----RRPPAES 322 R T N THHPISQVRYRG+A R+ + E RR RSR P RPP ES Sbjct 343 RRRPASTGANGTHHPISQVRYRGAAAPGQPREPHTE-----RRTRSRTPGRTQGRPPTES 397 Query 323 WEYD 326 WEYD Sbjct 398 WEYD 401 >gi|336458726|gb|EGO37686.1| hypothetical protein MAPs_10090 [Mycobacterium avium subsp. paratuberculosis S397] Length=393 Score = 259 bits (662), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 186/415 (45%), Positives = 216/415 (53%), Gaps = 121/415 (29%) Query 10 VQASHRSIHPHIPGVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCYIAGCVGAVL 69 ++++H SIHP+IPG+PW+AA+L+AVTATAIGY IDAG HK LT VF G YIAGCV AVL Sbjct 1 MESAHHSIHPNIPGLPWYAAVLVAVTATAIGYGIDAG--HKELTHVFAGFYIAGCVAAVL 58 Query 70 AVRQSDLFTALVQPPLILFCAVPGAYWLFHGGTIGKFKDLLINCGYSLIERFPLMLGTAA 129 AVRQ +FT ++QPPLILFCAVPGAYWLFH +G+ KDLLINCGY LIERFPLMLGTA Sbjct 59 AVRQDGIFTTIIQPPLILFCAVPGAYWLFHDAKVGRLKDLLINCGYPLIERFPLMLGTAG 118 Query 130 GVLLIGLVRWYLG----------------------TALFDSIARKLSSLMTGDSDDDGGR 167 VL IGLVRWY G +L + K+ + + DSD D Sbjct 119 AVLAIGLVRWYFGHGQRSTTAAGSDDAAAGPSVDVQSLVGGLVAKVRAALHPDSDGDTTE 178 Query 168 RSAQ------------------------RPARTRSRHARPPSEDNREPIAERRSRRR--- 200 SAQ +RTRSRHARPP +D EP AER R+R Sbjct 179 ESAQRRRTRRSGSSSRTRRTARSTRSSASSSRTRSRHARPPLDDAAEP-AERPERQRRAT 237 Query 201 -----------------------------PRPQNDPHPRRNA--------------HERP 217 PRP DP R +ERP Sbjct 238 RRSAASARNYDTAGRNYDAAEPPRRTRRRPRPDADPELRGQTPREPRREPRPRRSPYERP 297 Query 218 APRSSRFDSYRSYQPSEPSGPAEPVNRYERRGARYQPYARYEPTYEPQRRRARPSEPT-- 275 PRSSRFD Y PSGP E + RY+ +RY+ P R R T Sbjct 298 VPRSSRFDGY-----DPPSGP-ENLGRYD---------SRYDTPEPPYEPRRRRPASTGA 342 Query 276 NPTHHPISQVRYRGSATRDARRDNYREEQRFDRRDRSRAP----RRPPAESWEYD 326 N THHPISQVRYRG+A R+ + E RR RSR P RPP ESWEYD Sbjct 343 NGTHHPISQVRYRGAAAPGQPREPHTE-----RRTRSRTPGRTQGRPPTESWEYD 392 >gi|118616060|ref|YP_904392.1| hypothetical protein MUL_0167 [Mycobacterium ulcerans Agy99] gi|118568170|gb|ABL02921.1| conserved hypothetical transmembrane protein [Mycobacterium ulcerans Agy99] Length=406 Score = 231 bits (589), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 115/172 (67%), Positives = 132/172 (77%), Gaps = 11/172 (6%) Query 1 VSAQRARSAVQASHRSIHPHIPGVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCY 60 +SA RAR+AV SHRSI P+IPG PWW A+LIAV+ TA+GYA DAG HK LT VF G Y Sbjct 1 MSADRARTAVPPSHRSIVPNIPGAPWWGAVLIAVSTTALGYAFDAG--HKDLTHVFAGFY 58 Query 61 IAGCVGAVLAVRQSDLFTALVQPPLILFCAVPGAYWLFHGGTIGKFKDLLINCGYSLIER 120 I GC+ AVLAVRQS +FTA++QPPLILF VPGAYWLFH IGKFKDLLINCGY LIER Sbjct 59 IVGCIAAVLAVRQSGVFTAVIQPPLILFITVPGAYWLFHSAKIGKFKDLLINCGYPLIER 118 Query 121 FPLMLGTAAGVLLIGLVRWYLGTALFDSIARKLSSLMTGDSDDDGGRRSAQR 172 FPLMLGTA VLLIGL+RWY+G +A++ S+L TG DDG +A R Sbjct 119 FPLMLGTAGTVLLIGLIRWYIG------MAQRTSALATG---DDGEPTTAAR 161 >gi|183984325|ref|YP_001852616.1| hypothetical protein MMAR_4354 [Mycobacterium marinum M] gi|183177651|gb|ACC42761.1| conserved hypothetical transmembrane protein [Mycobacterium marinum M] Length=405 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 115/172 (67%), Positives = 132/172 (77%), Gaps = 11/172 (6%) Query 1 VSAQRARSAVQASHRSIHPHIPGVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCY 60 +SA RAR+AV SHRSI P+IPG PWW A+LIAV+ TA+GYA DAG HK LT VF G Y Sbjct 1 MSADRARTAVPPSHRSIVPNIPGAPWWGAVLIAVSTTALGYAFDAG--HKDLTHVFAGFY 58 Query 61 IAGCVGAVLAVRQSDLFTALVQPPLILFCAVPGAYWLFHGGTIGKFKDLLINCGYSLIER 120 I GC+ AVLAVRQS +FTA++QPPLILF VPGAYWLFH IGKFKDLLINCGY LIER Sbjct 59 IVGCIAAVLAVRQSGVFTAVIQPPLILFITVPGAYWLFHSAKIGKFKDLLINCGYPLIER 118 Query 121 FPLMLGTAAGVLLIGLVRWYLGTALFDSIARKLSSLMTGDSDDDGGRRSAQR 172 FPLMLGTA VLLIGL+RWY+G +A++ S+L TG DDG +A R Sbjct 119 FPLMLGTAGTVLLIGLIRWYIG------MAQRTSALATG---DDGEPTTAAR 161 >gi|108801067|ref|YP_641264.1| hypothetical protein Mmcs_4103 [Mycobacterium sp. MCS] gi|119870209|ref|YP_940161.1| hypothetical protein Mkms_4179 [Mycobacterium sp. KMS] gi|108771486|gb|ABG10208.1| conserved hypothetical protein [Mycobacterium sp. MCS] gi|119696298|gb|ABL93371.1| conserved hypothetical protein [Mycobacterium sp. KMS] Length=387 Score = 226 bits (577), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 160/416 (39%), Positives = 201/416 (49%), Gaps = 118/416 (28%) Query 1 VSAQRARSAVQASHRSIHPHIPGVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCY 60 +S QRARSAV A HRS+HP PG+PWW A+++A T TA+G+A DAGSG + L VF+ CY Sbjct 1 MSGQRARSAVPADHRSVHPLFPGLPWWGAVVLAFTVTAVGFAFDAGSGSRELGSVFSACY 60 Query 61 IAGCVGAVLAVRQSDLFTALVQPPLILFCAVPGAYWLFHGGTIGKFKDLLINCGYSLIER 120 + GC+ AVLAVRQ+ LFTA++QPPL+LF VPGAY+LFHG I KDL INCGY LIER Sbjct 61 VLGCLLAVLAVRQAGLFTAVIQPPLLLFITVPGAYFLFHGSEIHGLKDLAINCGYPLIER 120 Query 121 FPLMLGTAAGVLLIGLVRWYLGTALFDSIA------------------------------ 150 FPLM T+A VLLIG+ RWYLG + + Sbjct 121 FPLMFFTSAAVLLIGMGRWYLGMSSRHATGTSAPAAKGTTRDVSKGASAAAAAGGLVAAL 180 Query 151 -RKLSSLMTGDSDDDGGR--------------RSAQRPARTRSR---------------- 179 K+S L++ + D G+ R A +PA R+R Sbjct 181 KTKVSGLLSAPAATDDGQDEEPPRRRRSSERPRRAAKPAAERTRSSRDAARGAAARKPAK 240 Query 180 ---------HARPPSEDNREPIAE------------------RRSRRR-PRPQNDPHPRR 211 H RPP + EP+ + RRSR + PR +P R Sbjct 241 RAATPSRSRHNRPPETEIIEPVVDRPRRSRSTPRTPESPEPRRRSRTQAPREAREPRETR 300 Query 212 NAHERPAPRSSRFDSYRSYQPSEPSGPAEPVNRYERRGARYQPYARYEPTYEPQRRRARP 271 +A + P PR R SY + R R R Y YEP EP R Sbjct 301 DARKLP-PRERRSSSY------------DRPERRPERSRRLDDYEPYEP-LEPHTRNGSS 346 Query 272 SEPTNPTHHPISQVRYRGSATRDARRDNYREEQRFDRRDRSRAPRRPPAESWEYDV 327 S HHPIS+VRYRG+ D QR + R R RA R A++WEYDV Sbjct 347 S------HHPISRVRYRGADEDD---------QRSEYRSRPRARRSWDADAWEYDV 387 >gi|342861700|ref|ZP_08718346.1| hypothetical protein MCOL_22541 [Mycobacterium colombiense CECT 3035] gi|342130834|gb|EGT84130.1| hypothetical protein MCOL_22541 [Mycobacterium colombiense CECT 3035] Length=402 Score = 222 bits (566), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 107/157 (69%), Positives = 121/157 (78%), Gaps = 3/157 (1%) Query 10 VQASHRSIHPHIPGVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCYIAGCVGAVL 69 ++ +HRSIHP+IPGVPW+AA+LIAVTATAIGY IDAG HK LT VF G YIAGCV AVL Sbjct 1 MEGAHRSIHPNIPGVPWYAALLIAVTATAIGYGIDAG--HKELTHVFAGFYIAGCVAAVL 58 Query 70 AVRQSDLFTALVQPPLILFCAVPGAYWLFHGGTIGKFKDLLINCGYSLIERFPLMLGTAA 129 AVRQ +FT ++QPPLILF AVPGAYWLFH +G+ KDLLINCGY LIERFPLMLGTA Sbjct 59 AVRQDGIFTTIIQPPLILFGAVPGAYWLFHDAKVGRLKDLLINCGYPLIERFPLMLGTAG 118 Query 130 GVLLIGLVRWYLGTALFDSIARKLSSLMTGDSDDDGG 166 GVL IGL RWY G A F + A K S+ + GG Sbjct 119 GVLAIGLARWYFGNAYFGN-ADKDSATANASEEVAGG 154 >gi|126436905|ref|YP_001072596.1| hypothetical protein Mjls_4334 [Mycobacterium sp. JLS] gi|126236705|gb|ABO00106.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length=392 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 93/144 (65%), Positives = 113/144 (79%), Gaps = 0/144 (0%) Query 1 VSAQRARSAVQASHRSIHPHIPGVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCY 60 +S QRARSAV A HRS+HP PG+PWW A+++A T TA+G+A DAGSG + L VF+ CY Sbjct 1 MSGQRARSAVPADHRSVHPLFPGLPWWGAVVLAFTVTAVGFAFDAGSGSRELGSVFSACY 60 Query 61 IAGCVGAVLAVRQSDLFTALVQPPLILFCAVPGAYWLFHGGTIGKFKDLLINCGYSLIER 120 + GC+ AVLAVRQ+ LFTA++QPPL+LF VPGAY+LFHG I KDL INCGY LIER Sbjct 61 VLGCLLAVLAVRQAGLFTAVIQPPLLLFVTVPGAYFLFHGSEIHGLKDLAINCGYPLIER 120 Query 121 FPLMLGTAAGVLLIGLVRWYLGTA 144 FPLM T+A VLLIG+ RWYLG + Sbjct 121 FPLMFFTSAAVLLIGMGRWYLGMS 144 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 60/171 (36%), Positives = 77/171 (46%), Gaps = 48/171 (28%) Query 176 TRSRHARPPSEDNREPIAE------------------RRSRRR-PRPQNDPHPRRNAHER 216 +RSRH RPP + EP+ + RRSR + PR +P R+A + Sbjct 251 SRSRHNRPPETEIIEPVVDRPRRSRSTPRTPESPEPRRRSRTQAPREAREPRETRDARKL 310 Query 217 PAPRSSRFDSYRSYQPSEPSGPAEPVNRYERRGARYQPYARYEPTYEPQRRRARPSEPTN 276 P PR R SY +R ERR R + YEP YEP R + Sbjct 311 P-PRERRSSSY---------------DRPERRTERSRRLDDYEP-YEPLEPHTRNG---S 350 Query 277 PTHHPISQVRYRGSATRDARRDNYREEQRFDRRDRSRAPRRPPAESWEYDV 327 +HHPIS+VRYRG+ D QR + R R RA R A++WEYDV Sbjct 351 SSHHPISRVRYRGADEDD---------QRSEYRSRPRARRSWDADAWEYDV 392 >gi|120405578|ref|YP_955407.1| hypothetical protein Mvan_4626 [Mycobacterium vanbaalenii PYR-1] gi|119958396|gb|ABM15401.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=367 Score = 209 bits (532), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 150/384 (40%), Positives = 191/384 (50%), Gaps = 74/384 (19%) Query 1 VSAQRARSAVQASHRSIHPHIPGVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCY 60 +S QRAR AV H S HP+I G+PWW AIL AV A+AIG+A DAGSG LT F Y Sbjct 1 MSEQRARPAVAPEHSSAHPNIAGIPWWGAILTAVIASAIGFAFDAGSGGGQLTAAFAALY 60 Query 61 IAGCVGAVLAVRQSDLFTALVQPPLILFCAVPGAYWLFHGGTIGKFKDLLINCGYSLIER 120 + GC+ AVLAV+QS+LFTA++QPPL+LF VP AY+L H I KD+LINCGY LIER Sbjct 61 VVGCLVAVLAVQQSNLFTAVIQPPLVLFVTVPAAYFLMHSSDIQGLKDILINCGYPLIER 120 Query 121 FPLMLGTAAGVLLIGLVRWYLGTA--LFDSIAR------------KLSSLMTGDSDDDGG 166 FPLM T+A VL+IGL RWY + F + AR KLSSL+ G + G Sbjct 121 FPLMFFTSAAVLMIGLARWYFAKSGHQFGAQARGKGAPAGAGLSAKLSSLLGGSATAVDG 180 Query 167 RRSAQRPARTRSRHARPPSEDNREPIAERRSRRRPRPQNDPHPRRNAHERPAPRSSRFD- 225 A P R R+ +P A R+S R RP PR A + PAP + D Sbjct 181 DAVADEPPRRRATDR---RRAAPKP-AARKSSRGDRPVKRSAPR--ARQAPAPETEIIDP 234 Query 226 ----------------------------------SYRSYQPSEPSGPAEPVNRYERRGAR 251 + RS P P P + +R Sbjct 235 VADRPRRRRPRPEEQPPTPEPRRRPRTSSAREPRNARSRDPLPPRERRSPYDGDDRHD-- 292 Query 252 YQPYARYEPTYEPQRR-RARPSEPTNP-------THHPISQVRYRGSATRDARRDNYREE 303 ++P P +P+RR R EP +P +HHPIS+VRYRG+ D Sbjct 293 HRPQRDRGPREQPRRRSRFDDHEPFDPYSSAGTSSHHPISRVRYRGADDVD--------- 343 Query 304 QRFDRRDRSRAPRRPPAESWEYDV 327 R + R R +PR A+ WE+D+ Sbjct 344 DRAEHRSRRHSPRDADADRWEFDI 367 >gi|240171090|ref|ZP_04749749.1| hypothetical protein MkanA1_17396 [Mycobacterium kansasii ATCC 12478] Length=375 Score = 206 bits (523), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 96/119 (81%), Positives = 103/119 (87%), Gaps = 2/119 (1%) Query 24 VPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCYIAGCVGAVLAVRQSDLFTALVQP 83 +PWWAA+LIAVTATA+GYA DAG HK LT VF G Y+AGCV AVLAVRQS LFTA++QP Sbjct 1 MPWWAAVLIAVTATAVGYAFDAG--HKDLTHVFAGFYVAGCVAAVLAVRQSGLFTAVIQP 58 Query 84 PLILFCAVPGAYWLFHGGTIGKFKDLLINCGYSLIERFPLMLGTAAGVLLIGLVRWYLG 142 PLILF VPGAYWLFHG IGKFKDLLINCGY LIERFPLMLGTA GVLLIGL+RWY G Sbjct 59 PLILFFTVPGAYWLFHGSKIGKFKDLLINCGYPLIERFPLMLGTAGGVLLIGLIRWYFG 117 >gi|333989701|ref|YP_004522315.1| hypothetical protein JDM601_1061 [Mycobacterium sp. JDM601] gi|333485669|gb|AEF35061.1| integral membrane protein [Mycobacterium sp. JDM601] Length=365 Score = 197 bits (500), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 157/376 (42%), Positives = 190/376 (51%), Gaps = 60/376 (15%) Query 1 VSAQRARSAVQASHRSIHPHIPGVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCY 60 ++AQR SAV A HRSI P+ G PWW A+ +AV ATA+G A DAGSG K L++VF+ Y Sbjct 1 MAAQRQTSAVAADHRSILPNAAGFPWWGAVAVAVVATAVGVAFDAGSGDKELSIVFSALY 60 Query 61 IAGCVGAVLAVRQSDLFTALVQPPLILFCAVPGAYWLFHGGTIGKFKDLLINCGYSLIER 120 GC+ AVL VRQS +FTA+VQPPLILFC VP AYWLF GG K +LINCGY LIER Sbjct 61 AMGCIAAVLTVRQSAVFTAVVQPPLILFCTVPAAYWLFRGGGFPGVKAILINCGYPLIER 120 Query 121 FPLMLGTAAGVLLIGLVRWYLG------TALFDS--------IARKLSSLMTGDSDDDGG 166 FPLML TAA VLL+G+VRWYLG T D + KLS+L+ D Sbjct 121 FPLMLFTAAVVLLLGMVRWYLGMLSGATTPASDDGAPPRRPPLVEKLSALLNAALSRDPA 180 Query 167 RRSAQRPARTRSRHARPPSEDNREPIAER--------------RSRRRPRPQNDPHPRRN 212 A P+ RS R P + R E RS R R N P R+ Sbjct 181 H--AIEPSAARSPRERRPGDRPRRATPEARRAARKTAAGRPAARSGERRRGANGAVPSRS 238 Query 213 AHERPAPR---SSRFDSYRSYQPSEPSGPAEPVNRYE----------RRGARYQPYAR-Y 258 H RP ++ R P E P ++ R A P AR Y Sbjct 239 RHVRPPMDDVPATERPRRRRPAPDESLPRRRPAPDWQDAPPRRRPEPRSRADRDPRARGY 298 Query 259 EPTYEPQ---RRRARP----SEPTNPTHHPISQVRYRGSATRDARRDNYREEQRFDRRDR 311 PT P+ RRR P + THHP+S+VRYR D+ R+ R R Sbjct 299 RPTEAPESLPRRRQPPPTGRDNGADSTHHPVSRVRYRTGGGDDSGREP---------RTR 349 Query 312 SRAPRRPPAESWEYDV 327 SR PR +SWEYD+ Sbjct 350 SRQPRTGEFDSWEYDI 365 >gi|145222669|ref|YP_001133347.1| hypothetical protein Mflv_2081 [Mycobacterium gilvum PYR-GCK] gi|145215155|gb|ABP44559.1| hypothetical protein Mflv_2081 [Mycobacterium gilvum PYR-GCK] Length=375 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 93/168 (56%), Positives = 112/168 (67%), Gaps = 9/168 (5%) Query 1 VSAQRARSAVQASHRSIHPHIPGVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCY 60 +S QRAR AV A HRS HP++ G+PWW AIL AV A+ IG+A DAGSG ALT F Y Sbjct 1 MSGQRARPAVAADHRSAHPNVAGIPWWGAILSAVVASLIGFAFDAGSGGGALTGAFATLY 60 Query 61 IAGCVGAVLAVRQSDLFTALVQPPLILFCAVPGAYWLFHGGTIGKFKDLLINCGYSLIER 120 + GC+ VLAV+QS LFTA++QPPL+LF VP AY+L H I KD+LINCGY LI+R Sbjct 61 VIGCLIGVLAVQQSALFTAVIQPPLVLFVTVPAAYFLMHSSEIQGVKDILINCGYPLIQR 120 Query 121 FPLMLGTAAGVLLIGLVRWYLGT---------ALFDSIARKLSSLMTG 159 FPLM T+A VLLIGL RWY A +A KL+ L+ G Sbjct 121 FPLMFFTSAAVLLIGLARWYFAKSHPAGESQPAGVGGVAAKLAGLVGG 168 >gi|315443131|ref|YP_004076010.1| hypothetical protein Mspyr1_15050 [Mycobacterium sp. Spyr1] gi|315261434|gb|ADT98175.1| hypothetical protein Mspyr1_15050 [Mycobacterium sp. Spyr1] Length=375 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 93/168 (56%), Positives = 112/168 (67%), Gaps = 9/168 (5%) Query 1 VSAQRARSAVQASHRSIHPHIPGVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCY 60 +S QRAR AV A HRS HP++ G+PWW AIL AV A+ IG+A DAGSG ALT F Y Sbjct 1 MSGQRARPAVAADHRSAHPNVAGIPWWGAILSAVVASLIGFAFDAGSGGGALTGAFATLY 60 Query 61 IAGCVGAVLAVRQSDLFTALVQPPLILFCAVPGAYWLFHGGTIGKFKDLLINCGYSLIER 120 + GC+ VLAV+QS LFTA++QPPL+LF VP AY+L H I KD+LINCGY LI+R Sbjct 61 VIGCLIGVLAVQQSALFTAVIQPPLVLFVTVPAAYFLMHSSEIQGVKDILINCGYPLIQR 120 Query 121 FPLMLGTAAGVLLIGLVRWYLGT---------ALFDSIARKLSSLMTG 159 FPLM T+A VLLIGL RWY A +A KL+ L+ G Sbjct 121 FPLMFFTSAAVLLIGLARWYFAKSHPAGESQPAGVGGVAAKLAGLVGG 168 >gi|118462991|ref|YP_880477.1| hypothetical protein MAV_1231 [Mycobacterium avium 104] gi|118164278|gb|ABK65175.1| conserved hypothetical protein [Mycobacterium avium 104] Length=368 Score = 185 bits (469), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 95/164 (58%), Positives = 107/164 (66%), Gaps = 24/164 (14%) Query 30 ILIAVTATAIGYAIDAGSGHKALTLVFTGCYIAGCVGAVLAVRQSDLFTALVQPPLILFC 89 +L+AVTATAIGY IDAG HK LT VF G YIAGCV AVLAVRQ +FT ++QPPLILFC Sbjct 1 MLVAVTATAIGYGIDAG--HKELTHVFAGFYIAGCVAAVLAVRQDGIFTTIIQPPLILFC 58 Query 90 AVPGAYWLFHGGTIGKFKDLLINCGYSLIERFPLMLGTAAGVLLIGLVRWYLG------- 142 AVPGAYWLFH +G+ KDLLINCGY LIERFPLMLGTA VL IGLVRWY G Sbjct 59 AVPGAYWLFHDAKVGRLKDLLINCGYPLIERFPLMLGTAGAVLAIGLVRWYFGHGQRSTT 118 Query 143 ---------------TALFDSIARKLSSLMTGDSDDDGGRRSAQ 171 +L + K+ + + DSD D SAQ Sbjct 119 AAGSDDAAAGPSVDIQSLVGGLVAKVRAALHPDSDGDTTEESAQ 162 >gi|118472676|ref|YP_889469.1| hypothetical protein MSMEG_5223 [Mycobacterium smegmatis str. MC2 155] gi|118173963|gb|ABK74859.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=368 Score = 179 bits (454), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 145/363 (40%), Positives = 179/363 (50%), Gaps = 86/363 (23%) Query 24 VPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCYIAGCVGAVLAVRQSDLFTALVQP 83 +PWW A+L AVTATAIG+A DAG+G + L+ VF CY+ GC+ AVLAVRQS +FTA++QP Sbjct 1 MPWWGAVLAAVTATAIGFAFDAGAGSRELSGVFGFCYVVGCLAAVLAVRQSGVFTAVIQP 60 Query 84 PLILFCAVPGAYWLFHGGTIGKFKDLLINCGYSLIERFPLMLGTAAGVLLIGLVRWYLG- 142 PLILF AVPG+Y+LFHGG I KDL INCGY LIERFPLML T+A VLLIGL RWY+G Sbjct 61 PLILFFAVPGSYFLFHGGEINGLKDLAINCGYPLIERFPLMLFTSAAVLLIGLGRWYVGL 120 Query 143 ------------------------TALFDSIARKLSSLMT-GDSDDDGGRRSAQRPARTR 177 A+ SI KLSSL+ + D R R + R Sbjct 121 TSRDTGDTESATPSTRKRASDEAPNAVVASITSKLSSLLFRKPATDRSASRQRARQSTRR 180 Query 178 SRHARPPS----------------------EDNREPIAERRSRRRP-------RPQNDPH 208 R R + D +EP R +R + Sbjct 181 DRAERAGTGAAPRKRTGERPPRRRPAAAAAADAKEPTRNGRPTKRTAPPRARRPRDPELD 240 Query 209 PRRNAHERP-APRSSRFDSYRSY----------QPSEPSGPAE--PVNR---YE-----R 247 P +A ERP PRS+R + QP EP P + P +R YE R Sbjct 241 PTLDAPERPRRPRSARTEPPVVPPAEPRRRVRTQPREPREPRKQPPGDRLGPYERPQRRR 300 Query 248 RGARYQPY-----ARYEPTYEPQRRRARPSEPTNPTHHPISQVRYRGSATRDARRDNYRE 302 R Y+P+ A EP +EP+ P THHP+S+VRYRG D R YR Sbjct 301 RFDDYRPFEDPFDAPMEPPFEPRTN----GHPGRSTHHPVSRVRYRGGEDED-HRSEYRT 355 Query 303 EQR 305 R Sbjct 356 RPR 358 >gi|254774115|ref|ZP_05215631.1| hypothetical protein MaviaA2_05500 [Mycobacterium avium subsp. avium ATCC 25291] Length=202 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 86/113 (77%), Positives = 93/113 (83%), Gaps = 2/113 (1%) Query 30 ILIAVTATAIGYAIDAGSGHKALTLVFTGCYIAGCVGAVLAVRQSDLFTALVQPPLILFC 89 +L+AVTATAIGY IDAG HK LT VF G YIAGCV AVLAVRQ +FT ++QPPLILFC Sbjct 1 MLVAVTATAIGYGIDAG--HKELTHVFAGFYIAGCVAAVLAVRQDGIFTTIIQPPLILFC 58 Query 90 AVPGAYWLFHGGTIGKFKDLLINCGYSLIERFPLMLGTAAGVLLIGLVRWYLG 142 AVPGAYWLFH +G+ KDLLINCGY LIERFPLMLGTA VL IGLVRWY G Sbjct 59 AVPGAYWLFHDAKVGRLKDLLINCGYPLIERFPLMLGTAGAVLAIGLVRWYFG 111 >gi|254819701|ref|ZP_05224702.1| hypothetical protein MintA_07249 [Mycobacterium intracellulare ATCC 13950] Length=317 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 147/346 (43%), Positives = 165/346 (48%), Gaps = 112/346 (32%) Query 65 VGAVLAVRQSDLFTALVQPPLILFCAVPGAYWLFHGGTIGKFKDLLINCGYSLIERFPLM 124 + AVLAVRQ +FT ++QPPLILFCAVPGAYWLFH IG+ KDLLINCGY LIERFPLM Sbjct 1 MAAVLAVRQDGIFTTIIQPPLILFCAVPGAYWLFHDAKIGRLKDLLINCGYPLIERFPLM 60 Query 125 LGTAAGVLLIGLVRWYLGTA----------------------LFDSIARKLSSLMTGDSD 162 LGTA VL IGL RWY G A F+SI KL S + D+D Sbjct 61 LGTAGAVLAIGLARWYFGNAQGTKATSTSADSAGATGVHVKSFFNSIGAKLQSALQPDAD 120 Query 163 DDG-------GRRSAQRPARTR-------------SRHARPPSEDNREPIAE---RRSRR 199 D GR S ARTR SRHARP +D E R +RR Sbjct 121 DTDEATESRRGRTSGS-SARTRRTARDGRSSTRSRSRHARPSLDDESVERLERPRRSTRR 179 Query 200 RP------------------RPQNDPHPR--------------RNAHERPA--PRSSRFD 225 P RP+ DP R RN +ERP PR SRFD Sbjct 180 NPAAARDYDAEPPRRSRRRPRPEGDPDLRGQTPREPRREPRTRRNPYERPYDRPRGSRFD 239 Query 226 SYRSYQPSEPSGPAEPVNRYERRGARYQPYARYEPTYEPQRRRARPSEPTNPTHHPISQV 285 + EP G +RYE RRR PS + THHPISQV Sbjct 240 GF------EPYG-----DRYEE-----------SREPYEPRRRRPPSTGSGGTHHPISQV 277 Query 286 RYRGSATRDARRDNYREEQRFDRRDRSRAP----RRPPAESWEYDV 327 RYRG T+D R+ + E RR RSR P RP AESWEYDV Sbjct 278 RYRG-GTQDQPREPHTE-----RRSRSRTPGRAHGRPAAESWEYDV 317 >gi|169628351|ref|YP_001702000.1| hypothetical protein MAB_1258c [Mycobacterium abscessus ATCC 19977] gi|169240318|emb|CAM61346.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=289 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 68/119 (58%), Positives = 82/119 (69%), Gaps = 0/119 (0%) Query 24 VPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCYIAGCVGAVLAVRQSDLFTALVQP 83 +PWW AILIAV T G+A+DA + LT F GCY AGCV AVLAVR + +FTA+VQP Sbjct 1 MPWWGAILIAVAGTLFGFALDAMINGEKLTGAFAGCYAAGCVVAVLAVRYASIFTAVVQP 60 Query 84 PLILFCAVPGAYWLFHGGTIGKFKDLLINCGYSLIERFPLMLGTAAGVLLIGLVRWYLG 142 PLILF ++P AY + + K I GY LIERFPLM+ TA GVL+IG+VRWY G Sbjct 61 PLILFASIPMAYLIMSQAPLAGGKSTAITIGYPLIERFPLMISTALGVLIIGVVRWYWG 119 >gi|226365342|ref|YP_002783125.1| hypothetical protein ROP_59330 [Rhodococcus opacus B4] gi|226243832|dbj|BAH54180.1| hypothetical membrane protein [Rhodococcus opacus B4] Length=289 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 80/186 (44%), Positives = 97/186 (53%), Gaps = 12/186 (6%) Query 2 SAQRARSAVQASHRSIHPHIPGVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCYI 61 + QRARS V RSI P +PG+PWW IL+AV T +G+A+DA G + LT F+ Y Sbjct 3 ATQRARSGVPLDRRSIVPTVPGLPWWGVILLAVGVTFVGFAVDAARGTE-LTAAFSTFYF 61 Query 62 AGCVGAVLAVRQSDLFTALVQPPLILFCAVPGAYWLFHGGTIGKFKDLLINCGYSLIERF 121 GCV AV A LFTA+VQPPLILF AVP L KDL IN Y L+ RF Sbjct 62 LGCVLAVAAAGNRALFTAIVQPPLILFVAVPLGQSLIADENSTALKDLAINVAYPLVNRF 121 Query 122 PLMLGTAAGVLLIGLVRWYLGTALFDSIARKLSSLMTGDSDDDGGRRSAQRPARTRSRHA 181 P+ML LLIG +R +L L TG + RR+ + P R R A Sbjct 122 PVMLAATVVTLLIGGLRLFL-----------LQQRKTGPARTSERRRAQRAPRTARPRLA 170 Query 182 RPPSED 187 SE Sbjct 171 AEESEQ 176 >gi|111022834|ref|YP_705806.1| hypothetical protein RHA1_ro05871 [Rhodococcus jostii RHA1] gi|110822364|gb|ABG97648.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=280 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 69/140 (50%), Positives = 83/140 (60%), Gaps = 1/140 (0%) Query 2 SAQRARSAVQASHRSIHPHIPGVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCYI 61 + QRARS V RSI P +PG+PWW IL+AV T +G+A+DA G + LT F+ Y Sbjct 3 ATQRARSGVPLDRRSIVPTVPGLPWWGVILLAVGVTFVGFAVDAARGTE-LTAAFSTFYF 61 Query 62 AGCVGAVLAVRQSDLFTALVQPPLILFCAVPGAYWLFHGGTIGKFKDLLINCGYSLIERF 121 GCV AV A LFTA+VQPPLILF AVP L KDL IN Y L+ RF Sbjct 62 LGCVLAVAAAGNRALFTAIVQPPLILFVAVPLGQSLIADENSTALKDLAINVAYPLVNRF 121 Query 122 PLMLGTAAGVLLIGLVRWYL 141 P+ML LLIG +R +L Sbjct 122 PVMLAATVVTLLIGGLRLFL 141 >gi|226307720|ref|YP_002767680.1| hypothetical protein RER_42330 [Rhodococcus erythropolis PR4] gi|226186837|dbj|BAH34941.1| hypothetical membrane protein [Rhodococcus erythropolis PR4] Length=318 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 63/140 (45%), Positives = 82/140 (59%), Gaps = 0/140 (0%) Query 2 SAQRARSAVQASHRSIHPHIPGVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCYI 61 + QRARS V RS+ +PG+PWW IL+A TA+G IDA G LT VF+ Y Sbjct 3 ATQRARSGVPLDKRSLIVTVPGLPWWGVILLAAGVTAVGVLIDATGGGGELTAVFSTFYF 62 Query 62 AGCVGAVLAVRQSDLFTALVQPPLILFCAVPGAYWLFHGGTIGKFKDLLINCGYSLIERF 121 GC+ AV+A LFTA+ QPPL+LF AVP + L +D+ IN Y L+ RF Sbjct 63 LGCLFAVVAASNKALFTAMAQPPLLLFAAVPIGHTLIGKDNSTALRDIAINIAYPLVNRF 122 Query 122 PLMLGTAAGVLLIGLVRWYL 141 P+ML VL+IG R++L Sbjct 123 PIMLAATVVVLIIGGFRYFL 142 >gi|229493916|ref|ZP_04387688.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|229319193|gb|EEN85042.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length=318 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 87/225 (39%), Positives = 112/225 (50%), Gaps = 21/225 (9%) Query 2 SAQRARSAVQASHRSIHPHIPGVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCYI 61 + QRARS V RS+ +PG+PWW IL+A TA+G IDA G LT VF+ Y Sbjct 3 ATQRARSGVPLDKRSLIVTVPGLPWWGVILLAAGVTAVGVLIDATGGGGELTSVFSTFYF 62 Query 62 AGCVGAVLAVRQSDLFTALVQPPLILFCAVPGAYWLFHGGTIGKFKDLLINCGYSLIERF 121 GC+ AV+A LFTA+ QPPL+LF AVP + L +D+ IN Y L+ RF Sbjct 63 LGCLFAVVAASNKALFTAMAQPPLLLFAAVPIGHTLIGKDNSTALRDIAINIAYPLVNRF 122 Query 122 PLMLGTAAGVLLIGLVRWYLGTALFDSIARKLSSLMTGDSDDDGGRRSAQRPARTRSRHA 181 P+ML VL+IG R++L L+ TG + RRSA A TR A Sbjct 123 PIMLAATVVVLIIGGFRYFL-----------LNQRPTGPARSTRSRRSA---ATTRDSSA 168 Query 182 RPPSEDNREPIAERRSRRRPRPQNDPHPRR----NAHERPAPRSS 222 + +P E RRR P P R E+PA RS+ Sbjct 169 ---AATREQPAPETGRRRRVSDAPVPGPPRRRAPEVDEQPAYRST 210 >gi|312138757|ref|YP_004006093.1| integral membrane protein [Rhodococcus equi 103S] gi|311888096|emb|CBH47408.1| putative integral membrane protein [Rhodococcus equi 103S] Length=307 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 115/303 (38%), Positives = 147/303 (49%), Gaps = 24/303 (7%) Query 2 SAQRARSAVQASHRSIHPHIPGVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCYI 61 + QRARS V RS P +PG+P W A+ +A AT +G+A DA SG + LT F+ Y Sbjct 3 ATQRARSGVPLDQRSALPTVPGIPAWGAVAVAAGATFLGFAFDAVSGSE-LTSAFSAMYF 61 Query 62 AGCVGAVLAVRQSDLFTALVQPPLILFCAVP-GAYWLFHGGTIGKFKDLLINCGYSLIER 120 GCV AVLAVR+ LFTA+VQPPL+LF AVP GA +L G G KD+ IN Y L+ R Sbjct 62 LGCVLAVLAVRKRSLFTAVVQPPLLLFVAVPLGAQFLTDGAGTG-LKDMAINVAYPLVNR 120 Query 121 FPLMLGTAAGVLLIGLVRWYLGTALFDSIARKLSSLMTGDSDDDGGRRSAQRPAR-TRSR 179 FPLML V LI R +L + + AR R+ + R R+ Sbjct 121 FPLMLAATVVVGLIAAARVFLVQSRPSAPARPRDRRAEARPARARRARNDRTATRDDRTT 180 Query 180 HARPPSEDNREPI-AERRSRRRPRPQN---------DPHPRRN--AHERPAPRSS--RFD 225 P ++D R P A R SR P +P+P R A+E PR R + Sbjct 181 VFDPVTDDRRAPTRAARPSRPAAEPATAHIPAGSPGNPYPGREGRAYEDTPPRRDYGRRE 240 Query 226 SYRSYQPSEPSGPAEPVNRYERRGARYQPYARYEPTYEPQRRRARPSEPTNPTHHPISQV 285 RS S EP+ R RR A Y+ + +P ARP HPI +V Sbjct 241 PLRSESGPRESARREPIPRNPRREAAYRDPVQRDPVA------ARPRRTAEVPAHPIPEV 294 Query 286 RYR 288 RYR Sbjct 295 RYR 297 >gi|54026768|ref|YP_121010.1| hypothetical protein nfa47940 [Nocardia farcinica IFM 10152] gi|54018276|dbj|BAD59646.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=285 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 86/219 (40%), Positives = 114/219 (53%), Gaps = 21/219 (9%) Query 2 SAQRARSAVQASHRSIHPHIPGVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCYI 61 ++QR RS V A RSI P +PGVP W+A+LIA+ T +G+ +DA LT F Y+ Sbjct 3 ASQRVRSRVPALQRSILPTVPGVPAWSAVLIAIGCTLLGFLLDARGDAVDLTSTFAVLYV 62 Query 62 AGCVGAVLAVRQSDLFTALVQPPLILFCAVPGAYWLFHGGTIGKFKDLLINCGYSLIERF 121 GCV AVLAVR LFT LV PPL+LF AVP AY GG KD+L+N L+ RF Sbjct 63 VGCVAAVLAVRMRGLFTTLVLPPLLLFVAVPLAYQQLSGGGSTGLKDILLNLAIPLVNRF 122 Query 122 PLMLGTAAGVLLIGLVRWYLGTALFDSIARKLSSLMTGDSDDDGGRRSAQRPARTRSRHA 181 P M+ VLLIG R +++ + G R + A + R Sbjct 123 PTMMLATVLVLLIGGYR-----------------IVSYRRETGAGHRDEVKRATSWGRTP 165 Query 182 RP---PSEDNREPIAERRSRRRPRPQNDPHPRRNAHERP 217 P P+ EP++ R+ RRPRP+ D P + +E P Sbjct 166 APKKKPARKAPEPVSARKKVRRPRPEVD-EPETDKYEAP 203 >gi|333921057|ref|YP_004494638.1| hypothetical protein AS9A_3397 [Amycolicicoccus subflavus DQS3-9A1] gi|333483278|gb|AEF41838.1| Hypothetical membrane protein [Amycolicicoccus subflavus DQS3-9A1] Length=165 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 60/111 (55%), Positives = 77/111 (70%), Gaps = 1/111 (0%) Query 31 LIAVTATAIGYAIDAGSGHKALTLVFTGCYIAGCVGAVLAVRQSDLFTALVQPPLILFCA 90 +IA+ +A+G+AIDA G + LTLVF+ Y AGCV AVLAV+Q LFTA+VQPPLILF Sbjct 1 MIALGLSAVGFAIDAMRGDE-LTLVFSVFYFAGCVAAVLAVQQRALFTAIVQPPLILFVG 59 Query 91 VPGAYWLFHGGTIGKFKDLLINCGYSLIERFPLMLGTAAGVLLIGLVRWYL 141 VP AY L + G + +I+ L+ RFPLML TAA VL+IG +R +L Sbjct 60 VPLAYQLLVPESPGGLRTRIIDLVLPLVTRFPLMLLTAAVVLVIGGIRLFL 110 >gi|325676550|ref|ZP_08156228.1| hypothetical protein HMPREF0724_14011 [Rhodococcus equi ATCC 33707] gi|325552728|gb|EGD22412.1| hypothetical protein HMPREF0724_14011 [Rhodococcus equi ATCC 33707] Length=277 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 103/282 (37%), Positives = 132/282 (47%), Gaps = 38/282 (13%) Query 30 ILIAVTATAIGYAIDAGSGHKALTLVFTGCYIAGCVGAVLAVRQSDLFTALVQPPLILFC 89 + +A AT +G+A DA SG + LT F+ Y GCV AVLAVR+ LFTA+VQPPL+LF Sbjct 1 MAVAAGATFLGFAFDAVSGSE-LTSAFSAMYFLGCVLAVLAVRKRGLFTAVVQPPLLLFV 59 Query 90 AVP-GAYWLFHGGTIGKFKDLLINCGYSLIERFPLMLGTAAGVLLIGLVRWYLGTALFDS 148 AVP GA +L G G KD+ IN Y L+ RFPLML V LI R +L + + Sbjct 60 AVPLGAQFLTDGAGTG-LKDMAINVAYPLVNRFPLMLAATVVVGLIAAARVFLVQSRPSA 118 Query 149 IARKLSSLMTGDSDDDGGRRSAQRPAR-TRSRHARPPSEDNREPI-AERRSRRRPRPQN- 205 AR R+ + R R+ P +++ R P A R SR P Sbjct 119 PARPRDRRAEARPARARRARNDRTATRDDRTTVFDPVTDERRAPTRAARPSRPAAEPATA 178 Query 206 --------DPHPRRN--AHERPAPRSSRFDSYRSYQPSEP----SGPAE-----PVNRYE 246 +P+P R A+E PR R Y EP SGP E P+ R Sbjct 179 HIPAGSPGNPYPGREGRAYEDSPPR-------RDYGRREPLRSESGPRESARRDPIPRSP 231 Query 247 RRGARYQPYARYEPTYEPQRRRARPSEPTNPTHHPISQVRYR 288 RR A Y+ + +P ARP HPI +VRYR Sbjct 232 RREAAYRDPVQRDPVA------ARPRRTAEVPAHPIPEVRYR 267 >gi|296393511|ref|YP_003658395.1| hypothetical protein Srot_1091 [Segniliparus rotundus DSM 44985] gi|296180658|gb|ADG97564.1| conserved hypothetical protein [Segniliparus rotundus DSM 44985] Length=297 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 73/180 (41%), Positives = 91/180 (51%), Gaps = 6/180 (3%) Query 14 HRSIHPHIPGVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCYIAGCVGAVLAVRQ 73 RS +PGVPWW A+ IAV TA+G A D + ++T F Y GCV A L V Sbjct 13 KRSALGGLPGVPWWGAVAIAVGCTALGAAGDILTSAPSVTGAFNWLYAIGCVLAALVVAN 72 Query 74 SDLFTALVQPPLILFCAVPGAYWLFHGGTIGKFKDLLINCGYSLIERFPLMLGTAAGVLL 133 + LFTA VQP LILF AVP WL G K +++ LI RFP M + VL Sbjct 73 AGLFTAAVQPSLILFVAVPLTTWLISPGQQASTKAVVL-IALPLISRFPWMAWVSGVVLA 131 Query 134 IGLVRWYLG--TALFDSIARKLSSLMTGDSDDDGGRRSAQRPARTRSRHARPPSEDNREP 191 I LVRW L A +S+A + + T + G RR+A A R RH P R+P Sbjct 132 ICLVRWALWRLAARRESVAARRAK--TKATKPSGERRAASSVAPPR-RHKGSPDVPARKP 188 >gi|343924757|ref|ZP_08764296.1| hypothetical protein GOALK_026_00280 [Gordonia alkanivorans NBRC 16433] gi|343765264|dbj|GAA11222.1| hypothetical protein GOALK_026_00280 [Gordonia alkanivorans NBRC 16433] Length=286 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 62/165 (38%), Positives = 79/165 (48%), Gaps = 17/165 (10%) Query 18 HPHIPGVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCYIAGCVGAVLAVRQSDLF 77 P + GVPWW A+L+A TA+G AIDAGS + +L ++ CY+ GCV A LAVR+ LF Sbjct 1 MPAVRGVPWWGAVLLATGITALGAAIDAGS-NDSLGGIYKFCYLVGCVVAALAVRRRALF 59 Query 78 TALVQPPLI-LFCAVPGAYWLFHGGTIGKFKDLLINCGYSLIERFPLMLGTAAGVLLIGL 136 TA QPPLI F + Y L K L+ + FP ML L + L Sbjct 60 TAAAQPPLIAFFVGIATLYGLNSEQASSGLKSLIFKVLLPIAADFPWMLTVFLVTLALVL 119 Query 137 VRWYLGTALFDSIARKLSSLMTGDSDDDGGRRSAQRPARTRSRHA 181 VRW+ L GD D + G R R+ SR A Sbjct 120 VRWF---------------LTRGDDDKNSGGRGKPTGTRSASRSA 149 >gi|326381373|ref|ZP_08203067.1| hypothetical protein SCNU_00440 [Gordonia neofelifaecis NRRL B-59395] gi|326199620|gb|EGD56800.1| hypothetical protein SCNU_00440 [Gordonia neofelifaecis NRRL B-59395] Length=356 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 58/140 (42%), Positives = 74/140 (53%), Gaps = 7/140 (5%) Query 12 ASHRSIHPHIPGVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCYIAGCVGAVLAV 71 A RS+ P++ GVPWW A+LIAV AT IG I A S +L F CY+ GC+ A L V Sbjct 3 ADERSVLPNVRGVPWWGAVLIAVGATTIGALIAADS-SSSLGRAFKVCYLIGCLLAALFV 61 Query 72 RQSDLFTALVQPPLILF-CAVPGAYWLFHGGTIGKFKDLLINCGYSLIERFPLMLGTAAG 130 RQ LFTA QPPLI F V Y L G G +D+++ + FP +L Sbjct 62 RQRALFTAAAQPPLIAFIVGVVTLYTLRSDGAKG-MRDIVLKVVLPIATSFPWILLAFLM 120 Query 131 VLLIGLVRWYL----GTALF 146 L + + RW+ G ALF Sbjct 121 TLAVVIARWFFARPSGQALF 140 >gi|317506623|ref|ZP_07964414.1| hypothetical protein HMPREF9336_00784 [Segniliparus rugosus ATCC BAA-974] gi|316255055|gb|EFV14334.1| hypothetical protein HMPREF9336_00784 [Segniliparus rugosus ATCC BAA-974] Length=292 Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 59/160 (37%), Positives = 79/160 (50%), Gaps = 9/160 (5%) Query 24 VPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCYIAGCVGAVLAVRQSDLFTALVQP 83 +PWW A+ +AV TAIG A+D + ++ F Y GCV A L V + LFTA VQP Sbjct 1 MPWWGAVAVAVVCTAIGAAVDVPTPSSSMGDPFNWLYGIGCVLAALVVANTGLFTAAVQP 60 Query 84 PLILFCAVPGAYWLFHGGTIGKFKDLLINCGYSLIERFPLMLGTAAGVLLIGLVRWYLGT 143 L+LF +VP A WLF K ++ LI RFP M + VL I +VRW L Sbjct 61 SLVLFVSVPMAAWLFSPSEQVSGKGGVLFLAVPLISRFPWMAWVSGIVLAICVVRWGLW- 119 Query 144 ALFDSIARKLSSLMTGDSDDDGGRRSAQRPARTRSRHARP 183 +L+ + RSA++PA R+ A P Sbjct 120 --------RLAQRRENVAAALAKTRSAKKPAERRASSAAP 151 >gi|302530081|ref|ZP_07282423.1| predicted protein [Streptomyces sp. AA4] gi|302438976|gb|EFL10792.1| predicted protein [Streptomyces sp. AA4] Length=304 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 51/123 (42%), Positives = 63/123 (52%), Gaps = 10/123 (8%) Query 23 GVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCYIAGCVGAVLAVRQSDLFTALVQ 82 G+PWWAA+L+ +G ID S +L VF Y G V AV AV++ LF +VQ Sbjct 34 GLPWWAAVLVGFGLAVLGAIIDEKS-SGSLGFVFKAGYFLGAVIAVGAVQRRGLFGPMVQ 92 Query 83 PPLILFCAVPGAYWLFHGG-----TIGKFKDLLINCGYSLIERFPLMLGTAAGVLLIGLV 137 PPL+L VPG L GG T+ K L+N G LI+ FP M T LL G Sbjct 93 PPLVLAVTVPGVVLLTGGGPEASDTLSK----LLNIGTPLIKGFPTMAVTTGVTLLFGFF 148 Query 138 RWY 140 R Y Sbjct 149 RIY 151 >gi|262203281|ref|YP_003274489.1| hypothetical protein Gbro_3398 [Gordonia bronchialis DSM 43247] gi|262086628|gb|ACY22596.1| hypothetical protein Gbro_3398 [Gordonia bronchialis DSM 43247] Length=296 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 72/226 (32%), Positives = 106/226 (47%), Gaps = 11/226 (4%) Query 2 SAQRARSAVQASHRSIHPHIPGVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCYI 61 S QRA +++ +S+ P + G+PWW A+L+A TA+G IDA + +++L + Y+ Sbjct 3 SPQRAGASLPLDQQSVLPTVRGLPWWGAVLLATGPTALGAVIDA-TRNESLGATYNFFYL 61 Query 62 AGCVGAVLAVRQSDLFTALVQPPLILF-CAVPGAYWLFHGGTIGKFKDLLINCGYSLIER 120 GCV A LAVR+ LFTA QPPLI F ++ Y L + L++ + Sbjct 62 VGCVAAALAVRRRALFTAAAQPPLIAFVVSIVTLYQLHSQQASSNTRSLIVKVLIPIATN 121 Query 121 FPLMLGTAAGVLLIGLVRWYL--------GTALFDSIARKLSSLMTGDSDDDGGRRSAQR 172 FP M T L + L RWYL A K S T +SD + ++ Sbjct 122 FPWMAVTFLITLALVLTRWYLTRSEAERARRRPGTRRASKRSKPTTAESDGETTAGKSRP 181 Query 173 PARTRSRHARPPSEDNREPIAERRSRRRPRPQNDPHPRRNAHERPA 218 +RTR RP + +R R RP+ P PR A + P+ Sbjct 182 RSRTRGAGERPAPGTRAKSSTAQRPRSAARPKRIP-PRTEAADAPS 226 >gi|340531538|gb|AEK46743.1| hypothetical protein RAM_41380 [Amycolatopsis mediterranei S699] Length=303 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 47/121 (39%), Positives = 66/121 (55%), Gaps = 5/121 (4%) Query 23 GVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCYIAGCVGAVLAVRQSDLFTALVQ 82 G+PWWAA+L+ + +G + S + ++F CYIAG V AV AVR+ LF +V Sbjct 31 GLPWWAAVLVGLVLAVVGALLGKPS-QTNIPVIFIVCYIAGAVIAVCAVRRRGLFGPMVM 89 Query 83 PPLILFCAVPGAYWLFHGGTIGKFKDLL---INCGYSLIERFPLMLGTAAGVLLIGLVRW 139 PPL+L VP L G+ + D+L ++ G LI FP+M T LLIG VR Sbjct 90 PPLVLAVTVP-TVILLTSGSAAQGDDMLSKALSIGTPLINSFPMMAITTGITLLIGFVRI 148 Query 140 Y 140 + Sbjct 149 F 149 >gi|257057115|ref|YP_003134947.1| hypothetical protein Svir_31470 [Saccharomonospora viridis DSM 43017] gi|256586987|gb|ACU98120.1| hypothetical protein Svir_31470 [Saccharomonospora viridis DSM 43017] Length=321 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 51/160 (32%), Positives = 79/160 (50%), Gaps = 16/160 (10%) Query 52 LTLVFTGCYIAGCVGAVLAVRQSDLFTALVQPPLILFCAVPGAYWLFHGGTIGKFKDLL- 110 L+ +F CYI G +GA+LAV++ LF +VQPPL + AVP G + + D+L Sbjct 20 LSTLFHACYIVGSLGAILAVQRKSLFGPMVQPPLAMAVAVPLVVLTASG--LPEGSDMLS 77 Query 111 --INCGYSLIERFPLMLGTAAGVLLIGLVRWYLGTALFDSIARKLSSLMTGDSDDDGGRR 168 + G LI FP+M GT A +L+G+VR + ++ + ++ +GG+R Sbjct 78 KALAIGTPLINSFPIMAGTTAATVLVGIVR----------MVKQRARDEKDEATREGGKR 127 Query 169 SAQRPARTRSRHARPPSEDNREPIAERRSRRRPRPQNDPH 208 S R + +S SE + + R RRRP P Sbjct 128 SPDR-KKPKSDDEAAGSESLEDSRDDARQRRRPDAAGSPE 166 >gi|319950223|ref|ZP_08024150.1| integral membrane protein [Dietzia cinnamea P4] gi|319436127|gb|EFV91320.1| integral membrane protein [Dietzia cinnamea P4] Length=155 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 44/115 (39%), Positives = 64/115 (56%), Gaps = 4/115 (3%) Query 12 ASHRSIHPHIPGVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCYIAGCVGAVLAV 71 A RS+ + G+P W A+L+ V T G A+D+ SG L FT ++ GCV +VLA+ Sbjct 3 ADERSVVSSMRGLPAWTAVLLVVAITLTGVAVDSVSGE--LGAGFTVAFVLGCVMSVLAI 60 Query 72 RQSDLFTALVQPPLILFCAVPGAYWLFHGGTIGKF--KDLLINCGYSLIERFPLM 124 + LF A VQPP+I+ VP Y + G+ G + L+++ L RFPLM Sbjct 61 SRRSLFVAGVQPPIIMTLLVPLVYVISGAGSGGGVFSRTLIVSVALPLATRFPLM 115 >gi|300789867|ref|YP_003770158.1| hypothetical protein AMED_8053 [Amycolatopsis mediterranei U32] gi|299799381|gb|ADJ49756.1| conserved hypothetical protein [Amycolatopsis mediterranei U32] Length=262 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 47/121 (39%), Positives = 66/121 (55%), Gaps = 5/121 (4%) Query 23 GVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCYIAGCVGAVLAVRQSDLFTALVQ 82 G+PWWAA+L+ + +G + S + ++F CYIAG V AV AVR+ LF +V Sbjct 31 GLPWWAAVLVGLVLAVVGALLGKPS-QTNIPVIFIVCYIAGAVIAVCAVRRRGLFGPMVM 89 Query 83 PPLILFCAVPGAYWLFHGGTIGKFKDLL---INCGYSLIERFPLMLGTAAGVLLIGLVRW 139 PPL+L VP L G+ + D+L ++ G LI FP+M T LLIG VR Sbjct 90 PPLVLAVTVP-TVILLTSGSAAQGDDMLSKALSIGTPLINSFPMMAITTGITLLIGFVRI 148 Query 140 Y 140 + Sbjct 149 F 149 >gi|305681791|ref|ZP_07404595.1| conserved hypothetical protein [Corynebacterium matruchotii ATCC 14266] gi|305658264|gb|EFM47767.1| conserved hypothetical protein [Corynebacterium matruchotii ATCC 14266] Length=551 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 37/136 (28%), Positives = 60/136 (45%), Gaps = 8/136 (5%) Query 23 GVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCYIAGCVGAVLAVRQSDLFTALVQ 82 G+P W ++ + +G I SG L L F C+I G V +VL LF ++V Sbjct 19 GIPLWMSLAVLCGGLLVGSLISLASGK--LGLPFVLCFIIGVVFSVLLTEPRSLFLSVVS 76 Query 83 PPLILFCAVPGAYWLFH------GGTIGKFKDLLINCGYSLIERFPLMLGTAAGVLLIGL 136 P+ A W + G+ G K +++ Y L+++FP+M G +I Sbjct 77 IPIFFSIAAGATGWFLNQQISRPNGSGGISKTQILSAIYPLLQQFPVMAIATIGAGIIAY 136 Query 137 VRWYLGTALFDSIARK 152 +RW+L T +K Sbjct 137 LRWHLVTRYVQQSEKK 152 >gi|134097538|ref|YP_001103199.1| hypothetical protein SACE_0940 [Saccharopolyspora erythraea NRRL 2338] gi|133910161|emb|CAM00274.1| hypothetical protein SACE_0940 [Saccharopolyspora erythraea NRRL 2338] Length=289 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 36/114 (32%), Positives = 59/114 (52%), Gaps = 3/114 (2%) Query 30 ILIAVTATAIGYAIDAGSGHKALTLVFTGCYIAGCVGAVLAVRQSDLFTALVQPPLILFC 89 +L+A TA+G +D + L+F C+ G + AV ++++++F +VQPPL+L Sbjct 1 MLLAAVPTAVGTLLDILIWSQP-GLLFKACFFVGSMLAVAFIKRANMFGPMVQPPLVLAM 59 Query 90 AVPGAYWLFHGGT--IGKFKDLLINCGYSLIERFPLMLGTAAGVLLIGLVRWYL 141 +P L GT G + LI FP+M T A ++IGL+R Y+ Sbjct 60 VMPVLVLLTGSGTPKDGGLAAKALAVVNPLIGSFPVMAATTALAVVIGLLRMYV 113 >gi|296118158|ref|ZP_06836739.1| putative membrane protein [Corynebacterium ammoniagenes DSM 20306] gi|295968716|gb|EFG81960.1| putative membrane protein [Corynebacterium ammoniagenes DSM 20306] Length=418 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/165 (27%), Positives = 68/165 (42%), Gaps = 9/165 (5%) Query 23 GVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCYIAGCVGAVLAVRQSDLFTALVQ 82 +P W +I + V A A G I + +++ F C+I G V A V LF + Sbjct 21 ALPVWTSIAVIVAALATGLIISTITA--SVSWPFLICFILGAVAASAMVHVRGLFLTVAS 78 Query 83 PPLILFCAVPGAYWLFHGGTIGK-----FKDLLINCGYSLIERFPLMLGTAAGVLLIGLV 137 PL+ A+ WL T +L+ Y L+E FP + T ++I + Sbjct 79 IPLLFSIAIFITSWLVSRATAADGSPLFSTTILVTSAYPLLEVFPQLAITVIICVIIAVF 138 Query 138 RWYLGTALFDSIARKLSSLMTGDSDDDGGRRSAQRPARTRSRHAR 182 R Y SI+ K L+ S + RR+++ +R R R Sbjct 139 RLYRAKQKATSISSK--ELVNRRSMAESNRRNSETTSRARKTTER 181 >gi|227487860|ref|ZP_03918176.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51867] gi|227542501|ref|ZP_03972550.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51866] gi|227092187|gb|EEI27499.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51867] gi|227181699|gb|EEI62671.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51866] Length=216 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/123 (31%), Positives = 54/123 (44%), Gaps = 4/123 (3%) Query 18 HPHIPGVPWWAAILIAVTATAIGYAIDAGSGHKALTLVFTGCYIAGCVGAVLAVRQSDLF 77 H I G+P WA L+ + A G I G +F+ I+ C+ L V +F Sbjct 4 HESIHGIPLWAVPLLLIAALLTGAVISMAGGTLGWIYLFSFGLISLCIA--LFVEPRGIF 61 Query 78 TALVQPPLILFCAVPGAYWLF-HGGTIGKFK-DLLINCGYSLIERFPLMLGTAAGVLLIG 135 A+ Q PL+ P A WL + F +LI Y L ++FP +L AG IG Sbjct 62 LAVAQIPLVFSIVTPFAGWLVAQTHSDNNFSATVLIGAAYPLFQQFPFLLIITAGAAAIG 121 Query 136 LVR 138 +R Sbjct 122 YLR 124 >gi|291009499|ref|ZP_06567472.1| hypothetical protein SeryN2_33700 [Saccharopolyspora erythraea NRRL 2338] Length=199 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/90 (34%), Positives = 48/90 (54%), Gaps = 2/90 (2%) Query 54 LVFTGCYIAGCVGAVLAVRQSDLFTALVQPPLILFCAVPGAYWLFHGGT--IGKFKDLLI 111 L+F C+ G + AV ++++++F +VQPPL+L +P L GT G + Sbjct 19 LLFKACFFVGSMLAVAFIKRANMFGPMVQPPLVLAMVMPVLVLLTGSGTPKDGGLAAKAL 78 Query 112 NCGYSLIERFPLMLGTAAGVLLIGLVRWYL 141 LI FP+M T A ++IGL+R Y+ Sbjct 79 AVVNPLIGSFPVMAATTALAVVIGLLRMYV 108 >gi|258654506|ref|YP_003203662.1| hypothetical protein Namu_4386 [Nakamurella multipartita DSM 44233] gi|258557731|gb|ACV80673.1| hypothetical protein Namu_4386 [Nakamurella multipartita DSM 44233] Length=155 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 52/129 (41%), Positives = 67/129 (52%), Gaps = 19/129 (14%) Query 16 SIHPHIPGVPWWAAILIAVTATAIGYAIDAGSGHKALTLVF---TGCYIAGCVGAVLAVR 72 S+ + G P WA I++A+ T G AID G TL + G Y+ G VGA L VR Sbjct 15 SVVSSVRGWPSWAVIVLALLCTLAGAAID---GLTTGTLAWGLRIGFYL-GVVGAALLVR 70 Query 73 QSDLFTALVQPPLILFCAVPGAYWLFH--GGTIGKFKDLLINCGYSLIERFPLM-LGTAA 129 + +FTA+VQPPL+L + LF GG G LI FP M +GTAA Sbjct 71 RGSIFTAMVQPPLVLVVGLVVGGMLFTDAGGLYGT--------ALRLIATFPTMAMGTAA 122 Query 130 GVLLIGLVR 138 + LIGL+R Sbjct 123 AI-LIGLIR 130 Lambda K H 0.321 0.136 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 583355386968 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40