BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1114 Length=124 Score E Sequences producing significant alignments: (Bits) Value gi|15608254|ref|NP_215630.1| hypothetical protein Rv1114 [Mycoba... 238 2e-61 gi|289446704|ref|ZP_06436448.1| toxin [Mycobacterium tuberculosi... 235 2e-60 gi|254819697|ref|ZP_05224698.1| PilT domain-containing protein [... 168 2e-40 gi|84494706|ref|ZP_00993825.1| hypothetical protein JNB_07909 [J... 154 3e-36 gi|320532937|ref|ZP_08033698.1| toxin-antitoxin system, toxin co... 151 3e-35 gi|325067823|ref|ZP_08126496.1| toxin [Actinomyces oris K20] 149 1e-34 gi|326772427|ref|ZP_08231711.1| toxin-antitoxin system, toxin co... 148 3e-34 gi|41408778|ref|NP_961614.1| hypothetical protein MAP2680c [Myco... 144 5e-33 gi|343521936|ref|ZP_08758902.1| PIN domain protein [Actinomyces ... 139 1e-31 gi|311111850|ref|YP_003983072.1| PilT protein domain-containing ... 119 2e-25 gi|218513815|ref|ZP_03510655.1| hypothetical protein Retl8_08908... 112 1e-23 gi|78061181|ref|YP_371089.1| PilT protein-like [Burkholderia sp.... 111 3e-23 gi|190895428|ref|YP_001985720.1| hypothetical protein RHECIAT_PA... 111 4e-23 gi|227818710|ref|YP_002822681.1| PilT protein-like protein [Sino... 111 4e-23 gi|325168549|ref|YP_004280339.1| nucleic acid-binding protein [A... 111 5e-23 gi|339328581|ref|YP_004688273.1| hypothetical protein CNE_BB1p08... 110 5e-23 gi|209547154|ref|YP_002279072.1| PilT protein domain-containing ... 110 6e-23 gi|170700064|ref|ZP_02891087.1| PilT protein domain protein [Bur... 109 2e-22 gi|317402252|gb|EFV82838.1| PilT protein domain-containing prote... 108 2e-22 gi|320094346|ref|ZP_08026134.1| PilT protein family protein [Act... 108 2e-22 gi|16263656|ref|NP_436449.1| hypothetical protein SMa2231 [Sinor... 108 3e-22 gi|171315720|ref|ZP_02904953.1| PilT protein domain protein [Bur... 108 3e-22 gi|220933794|ref|YP_002512693.1| PilT protein-like protein [Thio... 107 8e-22 gi|222147547|ref|YP_002548504.1| nucleic acid-binding protein [A... 106 9e-22 gi|56130649|ref|YP_145552.1| hypothetical protein pMOL30_022 [Ra... 106 1e-21 gi|107025404|ref|YP_622915.1| PilT protein-like [Burkholderia ce... 106 1e-21 gi|254249823|ref|ZP_04943143.1| PilT protein, N-terminal [Burkho... 105 2e-21 gi|329894756|ref|ZP_08270558.1| PIN domain protein [gamma proteo... 105 3e-21 gi|170737308|ref|YP_001778568.1| PilT domain-containing protein ... 104 5e-21 gi|258592601|emb|CBE68910.1| PilT protein-like [NC10 bacterium '... 102 1e-20 gi|254418320|ref|ZP_05032044.1| hypothetical protein BBAL3_630 [... 101 4e-20 gi|294012927|ref|YP_003546387.1| putative nucleic-acid-binding p... 100 6e-20 gi|154247846|ref|YP_001418804.1| PilT domain-containing protein ... 100 9e-20 gi|218666342|ref|YP_002426005.1| PIN domain protein [Acidithioba... 99.4 2e-19 gi|198283413|ref|YP_002219734.1| PilT protein domain-containing ... 99.0 2e-19 gi|121583527|ref|YP_973953.1| PilT domain-containing protein [Po... 99.0 2e-19 gi|18121449|gb|AAK52345.1| unknown [Burkholderia sacchari] 98.6 2e-19 gi|315606071|ref|ZP_07881102.1| PilT protein family protein [Act... 97.8 4e-19 gi|198282373|ref|YP_002218694.1| PilT protein domain-containing ... 97.8 5e-19 gi|325982850|ref|YP_004295252.1| PilT protein domain-containing ... 97.1 7e-19 gi|241763424|ref|ZP_04761478.1| PilT protein domain protein [Aci... 97.1 8e-19 gi|171057321|ref|YP_001789670.1| PilT domain-containing protein ... 95.1 3e-18 gi|222056352|ref|YP_002538714.1| PilT protein domain protein [Ge... 94.4 5e-18 gi|158520428|ref|YP_001528298.1| PilT domain-containing protein ... 92.4 2e-17 gi|88704037|ref|ZP_01101752.1| conserved hypothetical protein [C... 90.9 6e-17 gi|226946670|ref|YP_002801743.1| PIN-domain-containing protein [... 90.9 6e-17 gi|103486190|ref|YP_615751.1| PilT protein-like protein [Sphingo... 90.5 8e-17 gi|124516228|gb|EAY57736.1| probable PilT protein [Leptospirillu... 90.1 9e-17 gi|148265880|ref|YP_001232586.1| PilT domain-containing protein ... 89.7 1e-16 gi|334129421|ref|ZP_08503226.1| hypothetical protein METUNv1_002... 88.2 3e-16 >gi|15608254|ref|NP_215630.1| hypothetical protein Rv1114 [Mycobacterium tuberculosis H37Rv] gi|15840551|ref|NP_335588.1| hypothetical protein MT1144 [Mycobacterium tuberculosis CDC1551] gi|31792307|ref|NP_854800.1| hypothetical protein Mb1144 [Mycobacterium bovis AF2122/97] 79 more sequence titles Length=124 Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 123/124 (99%), Positives = 124/124 (100%), Gaps = 0/124 (0%) Query 1 VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF 60 +ILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF Sbjct 1 MILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF 60 Query 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGVALA 120 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGVALA Sbjct 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGVALA 120 Query 121 EEVS 124 EEVS Sbjct 121 EEVS 124 >gi|289446704|ref|ZP_06436448.1| toxin [Mycobacterium tuberculosis CPHL_A] gi|289419662|gb|EFD16863.1| toxin [Mycobacterium tuberculosis CPHL_A] Length=124 Score = 235 bits (599), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 122/124 (99%), Positives = 123/124 (99%), Gaps = 0/124 (0%) Query 1 VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF 60 +ILVDTSVWIEHL AADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF Sbjct 1 MILVDTSVWIEHLCAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF 60 Query 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGVALA 120 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGVALA Sbjct 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGVALA 120 Query 121 EEVS 124 EEVS Sbjct 121 EEVS 124 >gi|254819697|ref|ZP_05224698.1| PilT domain-containing protein [Mycobacterium intracellulare ATCC 13950] Length=123 Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 84/122 (69%), Positives = 102/122 (84%), Gaps = 0/122 (0%) Query 1 VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF 60 +ILVDTS+WI+HL A+ RLV L +DE GCH +VIEELALG IKQRD VL LL++L +F Sbjct 1 MILVDTSIWIDHLHVAEQRLVGRLTNDEIGCHQMVIEELALGMIKQRDDVLRLLSHLREF 60 Query 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGVALA 120 P++TH E+L LV RRRLWGRGL A+DA+LLGSVA+V GARLWTRDK+LKAAC E GVA+ Sbjct 61 PLLTHAEILHLVDRRRLWGRGLSAIDAHLLGSVAVVDGARLWTRDKKLKAACKEVGVAIV 120 Query 121 EE 122 +E Sbjct 121 DE 122 >gi|84494706|ref|ZP_00993825.1| hypothetical protein JNB_07909 [Janibacter sp. HTCC2649] gi|84384199|gb|EAQ00079.1| hypothetical protein JNB_07909 [Janibacter sp. HTCC2649] Length=123 Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 80/122 (66%), Positives = 94/122 (78%), Gaps = 0/122 (0%) Query 1 VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF 60 +ILVDTSVWI+HL A + RLV LL DE GCHPLVI+ELALGSI++RD VL LLANL F Sbjct 1 MILVDTSVWIDHLHATEPRLVALLESDEVGCHPLVIQELALGSIRRRDHVLGLLANLRPF 60 Query 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGVALA 120 P + HDEVL V RRLWGRGL A DA+L+G+V LV G ++WTRDKRL AA + GVA+ Sbjct 61 PTLGHDEVLAFVEGRRLWGRGLSAADAHLVGAVTLVSGGQIWTRDKRLVAAANDVGVAVL 120 Query 121 EE 122 E Sbjct 121 PE 122 >gi|320532937|ref|ZP_08033698.1| toxin-antitoxin system, toxin component, PIN family [Actinomyces sp. oral taxon 171 str. F0337] gi|320134846|gb|EFW27033.1| toxin-antitoxin system, toxin component, PIN family [Actinomyces sp. oral taxon 171 str. F0337] Length=125 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 76/121 (63%), Positives = 91/121 (76%), Gaps = 0/121 (0%) Query 1 VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF 60 +ILVDTSVWI+H +D LV LL +DE G HPLV+EELA+GS+K RD VL L++L+QF Sbjct 1 MILVDTSVWIDHFHHSDPVLVNLLHEDEIGAHPLVVEELAMGSLKARDDVLKHLSHLHQF 60 Query 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGVALA 120 P ++HDE+L LV R LWGRGL VDA+LLGSV LV GA LWTRDKRL A E GV+ Sbjct 61 PTLSHDELLALVATRALWGRGLSPVDAHLLGSVMLVPGASLWTRDKRLLRAADEHGVSFV 120 Query 121 E 121 E Sbjct 121 E 121 >gi|325067823|ref|ZP_08126496.1| toxin [Actinomyces oris K20] Length=125 Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 77/121 (64%), Positives = 90/121 (75%), Gaps = 0/121 (0%) Query 1 VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF 60 +ILVDTSVWI+H +D LV LL +DE G HPLV EELA+GS++ RD VL LA+L QF Sbjct 1 MILVDTSVWIDHFHHSDPVLVSLLHEDEIGSHPLVAEELAMGSLRARDDVLKHLAHLRQF 60 Query 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGVALA 120 PV++HDE+L LV LWGRGL VDA+LLGSV LV GARLWTRDKRL A E GV+ Sbjct 61 PVLSHDELLTLVAAHVLWGRGLSPVDAHLLGSVTLVPGARLWTRDKRLLRAAEERGVSFT 120 Query 121 E 121 E Sbjct 121 E 121 >gi|326772427|ref|ZP_08231711.1| toxin-antitoxin system, toxin component, PIN family [Actinomyces viscosus C505] gi|326637059|gb|EGE37961.1| toxin-antitoxin system, toxin component, PIN family [Actinomyces viscosus C505] Length=125 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 76/121 (63%), Positives = 89/121 (74%), Gaps = 0/121 (0%) Query 1 VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF 60 +ILVDTSVWI+H +D LV LL +DE G HPLV EELA+GS++ RD VL L +L QF Sbjct 1 MILVDTSVWIDHFHHSDPVLVSLLHEDEIGSHPLVAEELAMGSLRSRDDVLKHLTHLRQF 60 Query 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGVALA 120 PV++HDE+L LV LWGRGL VDA+LLGSV LV GARLWTRDKRL A E GV+ Sbjct 61 PVLSHDELLTLVAAHALWGRGLSPVDAHLLGSVILVPGARLWTRDKRLLRAAEERGVSFT 120 Query 121 E 121 E Sbjct 121 E 121 >gi|41408778|ref|NP_961614.1| hypothetical protein MAP2680c [Mycobacterium avium subsp. paratuberculosis K-10] gi|118464152|ref|YP_880485.1| PilT domain-containing protein [Mycobacterium avium 104] gi|254774118|ref|ZP_05215634.1| PilT domain-containing protein [Mycobacterium avium subsp. avium ATCC 25291] gi|41397136|gb|AAS04997.1| hypothetical protein MAP_2680c [Mycobacterium avium subsp. paratuberculosis K-10] gi|118165439|gb|ABK66336.1| PIN domain, putative [Mycobacterium avium 104] gi|336458730|gb|EGO37690.1| putative nucleic acid-binding protein [Mycobacterium avium subsp. paratuberculosis S397] Length=123 Score = 144 bits (362), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 78/123 (64%), Positives = 97/123 (79%), Gaps = 0/123 (0%) Query 1 VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF 60 +ILVDTSVWI+HL AD RL+E L +D GCH +VIEELALG+I++R +L LL+NL F Sbjct 1 MILVDTSVWIDHLHVADKRLIEFLTNDAIGCHQMVIEELALGAIRRRADLLRLLSNLRAF 60 Query 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGVALA 120 P++TH EVL LV RLWGRGL A+D +LLGSVALV GARLWTRDK LKAA + G+A+ Sbjct 61 PLLTHAEVLHLVECHRLWGRGLSAIDVHLLGSVALVDGARLWTRDKNLKAAGWDVGIAIV 120 Query 121 EEV 123 +E+ Sbjct 121 DEL 123 >gi|343521936|ref|ZP_08758902.1| PIN domain protein [Actinomyces sp. oral taxon 175 str. F0384] gi|343401345|gb|EGV13851.1| PIN domain protein [Actinomyces sp. oral taxon 175 str. F0384] Length=125 Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 76/121 (63%), Positives = 89/121 (74%), Gaps = 0/121 (0%) Query 1 VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF 60 +ILVDTSVWI+H +D LV LL +DE G HPLV EELA+GS++ RD VL LA+L QF Sbjct 1 MILVDTSVWIDHFHHSDPVLVSLLHEDEIGAHPLVAEELAMGSLRSRDDVLKHLAHLRQF 60 Query 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGVALA 120 P ++HDE+L LV LWGRGL VDA+LLGSV LV GARLWTRDKRL A E GV+ Sbjct 61 PALSHDELLALVAAHALWGRGLSPVDAHLLGSVMLVPGARLWTRDKRLLRAAEERGVSFT 120 Query 121 E 121 E Sbjct 121 E 121 >gi|311111850|ref|YP_003983072.1| PilT protein domain-containing protein [Rothia dentocariosa ATCC 17931] gi|310943344|gb|ADP39638.1| PilT protein domain protein [Rothia dentocariosa ATCC 17931] Length=123 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 61/122 (50%), Positives = 78/122 (64%), Gaps = 0/122 (0%) Query 1 VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF 60 +ILVDT+VWI+HL + L ELL DE CH LV+ ELALGS+K+R+ L L+ L Q Sbjct 1 MILVDTNVWIDHLHRTEPELSELLMSDEICCHDLVLTELALGSLKKRNEFLSALSELKQL 60 Query 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGVALA 120 P V EV + +R+LWGRGL AVD +LL SV +V G LWTRDKRL+ + G Sbjct 61 PTVDDHEVRWFIEKRKLWGRGLSAVDVHLLASVVVVPGTTLWTRDKRLRDVAQDLGCRFE 120 Query 121 EE 122 + Sbjct 121 ND 122 >gi|218513815|ref|ZP_03510655.1| hypothetical protein Retl8_08908 [Rhizobium etli 8C-3] Length=127 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 57/119 (48%), Positives = 80/119 (68%), Gaps = 0/119 (0%) Query 1 VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF 60 +IL DTS+WI+H R AD+ L ++ DD CHP VI ELALGS++ R+ V+ LA + Sbjct 1 MILADTSIWIDHFRHADSELRRIIEDDRLLCHPAVIGELALGSLRDRNNVIAFLAAQREA 60 Query 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGVAL 119 V THDEV+ ++ R ++ G+G DA+L+ SV L A LWTRDKRL+AA ++G +L Sbjct 61 FVATHDEVMMMIDRHAVFSMGIGYTDAHLMASVLLDRRAALWTRDKRLRAAAEKAGASL 119 >gi|78061181|ref|YP_371089.1| PilT protein-like [Burkholderia sp. 383] gi|77969066|gb|ABB10445.1| PilT protein-like protein [Burkholderia sp. 383] Length=123 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 65/118 (56%), Positives = 77/118 (66%), Gaps = 0/118 (0%) Query 1 VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF 60 +ILVDTSVWI+HLRA D L LL D HP VI ELALGS++ R VLD L +L Sbjct 1 MILVDTSVWIDHLRAGDVTLTALLETDRVLIHPFVIGELALGSLRDRQTVLDALRDLPVA 60 Query 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGVA 118 T DEV RLV L G G+G VDA+LL SV L GG++LWTRD+RL +A G+A Sbjct 61 TSATDDEVQRLVDVVPLHGLGIGYVDAHLLASVRLTGGSKLWTRDRRLLSAADRLGLA 118 >gi|190895428|ref|YP_001985720.1| hypothetical protein RHECIAT_PA0000111 [Rhizobium etli CIAT 652] gi|190699373|gb|ACE93457.1| hypothetical conserved protein [Rhizobium etli CIAT 652] Length=127 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 57/119 (48%), Positives = 78/119 (66%), Gaps = 0/119 (0%) Query 1 VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF 60 +IL DTS+WI+H R AD+ L ++ DD CHP VI ELALG ++ R V+ LA Q Sbjct 1 MILADTSIWIDHFRHADSELRRIIEDDRLLCHPAVIGELALGRLRDRSNVIAFLAAQRQA 60 Query 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGVAL 119 V THDEV+ ++ R ++ G+G DA+L+ SV L A LWTRDKRL+AA ++G +L Sbjct 61 LVATHDEVMMMIDRHAIFSMGIGYTDAHLIASVLLDRRAALWTRDKRLRAAAEKAGASL 119 >gi|227818710|ref|YP_002822681.1| PilT protein-like protein [Sinorhizobium fredii NGR234] gi|36958966|gb|AAQ87391.1| IG hypothetical 15992 (cluster function) [Sinorhizobium fredii NGR234] gi|227337709|gb|ACP21928.1| PilT protein-like protein [Sinorhizobium fredii NGR234] Length=127 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 57/119 (48%), Positives = 76/119 (64%), Gaps = 0/119 (0%) Query 1 VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF 60 +IL DTS+WI+H R AD+ L ++ DD CHP VI ELALGS++ R V+ LA + Sbjct 1 MILADTSIWIDHFRHADSELRRIIEDDRLFCHPAVIGELALGSLRDRSNVIAFLAAQREA 60 Query 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGVAL 119 V THDEV+ ++ R ++ G+G DA+L+ SV L A LWTRDKRL+AA G L Sbjct 61 FVATHDEVMMMIDRHAIFSMGIGYTDAHLMASVLLDQRAALWTRDKRLRAAAERVGAPL 119 >gi|325168549|ref|YP_004280339.1| nucleic acid-binding protein [Agrobacterium sp. H13-3] gi|325064272|gb|ADY67961.1| nucleic acid-binding protein [Agrobacterium sp. H13-3] Length=127 Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 55/119 (47%), Positives = 78/119 (66%), Gaps = 0/119 (0%) Query 1 VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF 60 +ILVDTS+WI H R D+ L +++ DD+ CHP V+ ELALGS+++R VL+ LA + Sbjct 1 MILVDTSIWINHFRYDDSELRKIINDDQLLCHPFVVGELALGSLRERAAVLEFLAAQREA 60 Query 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGVAL 119 + TH EV+ ++ R ++ G+G DA+LL S L + LWTRDKRL AA + G AL Sbjct 61 LIATHAEVMTIIDRHSIFSMGIGYTDAHLLTSTLLDRRSSLWTRDKRLVAAAQKVGAAL 119 >gi|339328581|ref|YP_004688273.1| hypothetical protein CNE_BB1p08210 [Cupriavidus necator N-1] gi|338171182|gb|AEI82235.1| hypothetical protein CNE_BB1p08210 [Cupriavidus necator N-1] Length=123 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 57/114 (50%), Positives = 76/114 (67%), Gaps = 0/114 (0%) Query 1 VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF 60 +ILVDTSVWI+H+ A+D L+ LL ++ HP VI E++LGS++ RDVVL L +L + Sbjct 1 MILVDTSVWIDHINASDPVLISLLAEERVLAHPYVIGEISLGSLRDRDVVLGALLDLPRA 60 Query 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAACAE 114 PVVT +E L+ R L+ RG+G VD +LL S L G +WTRDKRLK E Sbjct 61 PVVTPEETFYLIEREGLFNRGIGYVDTSLLASARLQPGITIWTRDKRLKKVADE 114 >gi|209547154|ref|YP_002279072.1| PilT protein domain-containing protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538398|gb|ACI58332.1| PilT protein domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length=127 Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 56/119 (48%), Positives = 78/119 (66%), Gaps = 0/119 (0%) Query 1 VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF 60 +IL DTS+WI+H R AD+ L ++ DD CHP VI ELALGS++ R V+ LA + Sbjct 1 MILADTSIWIDHFRHADSELRRIIEDDRLLCHPAVIGELALGSLRDRGSVMAFLAAQREA 60 Query 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGVAL 119 V HDEV+ ++ R ++ G+G DA+L+ SV L A LWTRDKRL+AA ++G +L Sbjct 61 FVAAHDEVMMMIDRHAIFSMGIGYTDAHLMASVLLDQRAALWTRDKRLRAAAEKAGASL 119 >gi|170700064|ref|ZP_02891087.1| PilT protein domain protein [Burkholderia ambifaria IOP40-10] gi|170135028|gb|EDT03333.1| PilT protein domain protein [Burkholderia ambifaria IOP40-10] Length=123 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 61/112 (55%), Positives = 75/112 (67%), Gaps = 0/112 (0%) Query 1 VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF 60 +ILVDTSVWI+HLRA DA L LL + HP +I ELALGS++ R VLD L +L Sbjct 1 MILVDTSVWIDHLRAGDATLATLLEAERVLIHPFIIGELALGSMRDRQTVLDALRDLPAA 60 Query 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAAC 112 T DEV R++ L G G+G VDA+LL SV L GG++LWTRD+RL AA Sbjct 61 APATDDEVQRMIDVVPLHGLGIGYVDAHLLASVRLTGGSKLWTRDRRLLAAA 112 >gi|317402252|gb|EFV82838.1| PilT protein domain-containing protein [Achromobacter xylosoxidans C54] Length=125 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 58/119 (49%), Positives = 78/119 (66%), Gaps = 0/119 (0%) Query 1 VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF 60 +ILVDTS+WI+HL + LV LL ++ HP V ELALGS+ +RDVVL ++ L Q Sbjct 1 MILVDTSIWIDHLSDGEPYLVRLLEEESVLMHPFVAGELALGSLGRRDVVLGAMSLLPQV 60 Query 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGVAL 119 +HDEV+ + RL+G+G+G VD +LL S L GA LWTRDKRL+A G+A+ Sbjct 61 VRASHDEVMHFLHSERLFGKGIGYVDLHLLASTRLTPGAALWTRDKRLQALATTLGLAV 119 >gi|320094346|ref|ZP_08026134.1| PilT protein family protein [Actinomyces sp. oral taxon 178 str. F0338] gi|319978734|gb|EFW10289.1| PilT protein family protein [Actinomyces sp. oral taxon 178 str. F0338] Length=123 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 62/116 (54%), Positives = 75/116 (65%), Gaps = 0/116 (0%) Query 2 ILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQFP 61 ILVDT+VWI+HLRAA+ LV+LL D+ H VI ELALG++K R ++L L L Sbjct 3 ILVDTNVWIDHLRAAEPVLVDLLERDQVCVHQSVITELALGNLKDRSILLKALERLMMVR 62 Query 62 VVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGV 117 V V LV RRLWGRGL AVDA LL S + G LWTRDKRL+ A ++ GV Sbjct 63 NVDDQGVRHLVEERRLWGRGLSAVDAALLASAIVTPGVSLWTRDKRLRHAASDMGV 118 >gi|16263656|ref|NP_436449.1| hypothetical protein SMa2231 [Sinorhizobium meliloti 1021] gi|14524368|gb|AAK65861.1| conserved hypothetical protein [Sinorhizobium meliloti 1021] gi|333814141|gb|AEG06809.1| PilT protein domain protein [Sinorhizobium meliloti BL225C] gi|336035488|gb|AEH81419.1| conserved hypothetical protein [Sinorhizobium meliloti SM11] Length=127 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 55/119 (47%), Positives = 76/119 (64%), Gaps = 0/119 (0%) Query 1 VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF 60 +IL DTS+WI+H R DA L ++ DD CHP VI ELALGS+++R V+ L + Sbjct 1 MILADTSIWIDHFRHTDAELRRIIEDDRLLCHPAVIGELALGSLRERSSVIAFLMAQREA 60 Query 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGVAL 119 V TH EV+ ++ R ++ G+G DA+LL SV L LWTRDKRL+AA ++G +L Sbjct 61 LVATHQEVMMMIDRHAIFSMGIGYTDAHLLASVLLDQRMALWTRDKRLQAAAEKAGASL 119 >gi|171315720|ref|ZP_02904953.1| PilT protein domain protein [Burkholderia ambifaria MEX-5] gi|171099132|gb|EDT43908.1| PilT protein domain protein [Burkholderia ambifaria MEX-5] Length=123 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 60/112 (54%), Positives = 75/112 (67%), Gaps = 0/112 (0%) Query 1 VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF 60 +ILVDTSVWI+HLRA DA L LL + HP +I ELALGS++ R VL+ L +L Sbjct 1 MILVDTSVWIDHLRAGDATLTTLLEAERVLIHPFIIGELALGSMRNRQTVLEALRDLPAA 60 Query 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAAC 112 T DEV R++ L G G+G VDA+LL SV L GG++LWTRD+RL AA Sbjct 61 TPATDDEVQRMIEVVPLHGLGIGYVDAHLLASVRLTGGSKLWTRDRRLLAAA 112 >gi|220933794|ref|YP_002512693.1| PilT protein-like protein [Thioalkalivibrio sulfidophilus HL-EbGr7] gi|219995104|gb|ACL71706.1| PilT protein-like protein [Thioalkalivibrio sulfidophilus HL-EbGr7] Length=122 Score = 107 bits (266), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 58/122 (48%), Positives = 78/122 (64%), Gaps = 0/122 (0%) Query 1 VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF 60 +ILVDTSVW++HLR DA L ELL + HP V+ ELA G+++ R VL LL +L Q Sbjct 1 MILVDTSVWVDHLRTGDAVLAELLNRSQVLMHPFVVGELACGNLRNRSEVLRLLKDLPQA 60 Query 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGVALA 120 V + +EVL + R L G G+G VDA+LL +V L G +LWTRDKRL++ +A Sbjct 61 VVASDEEVLFFIERNALKGLGIGYVDAHLLAAVTLGGSTQLWTRDKRLRSVAETLNLAYG 120 Query 121 EE 122 E+ Sbjct 121 ED 122 >gi|222147547|ref|YP_002548504.1| nucleic acid-binding protein [Agrobacterium vitis S4] gi|221734535|gb|ACM35498.1| nucleic acid-binding protein [Agrobacterium vitis S4] Length=127 Score = 106 bits (265), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 53/116 (46%), Positives = 74/116 (64%), Gaps = 0/116 (0%) Query 1 VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF 60 +ILVDTS+WI+H R D L +++ DD CHP VI ELALGS+++R+ V+ LA + Sbjct 1 MILVDTSIWIDHFRHGDVELCKIIEDDRLLCHPFVIGELALGSLREREAVIGFLAAQREA 60 Query 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAACAESG 116 + TH EV+ ++ R ++ G+G DA+LL S L LWTRDKRL AA + G Sbjct 61 AIATHAEVMTVIDRYSIFSMGIGYTDAHLLTSTLLDRRVSLWTRDKRLAAAAQKVG 116 >gi|56130649|ref|YP_145552.1| hypothetical protein pMOL30_022 [Ralstonia metallidurans CH34] gi|94152434|ref|YP_581841.1| toxin of a toxin/antitoxin system [Cupriavidus metallidurans CH34] gi|56068640|emb|CAI11204.1| hypothetical protein [Cupriavidus metallidurans CH34] gi|93358804|gb|ABF12891.1| toxin of a toxin/antitoxin system, PIN domain (PilT -like protein) [Cupriavidus metallidurans CH34] Length=123 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 57/114 (50%), Positives = 74/114 (65%), Gaps = 0/114 (0%) Query 1 VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF 60 +ILVDTSVWI+HL A+D L+ LL + HP VI E++LGS++ RDVVL L +L + Sbjct 1 MILVDTSVWIDHLNASDPMLISLLTQERVLIHPYVIGEISLGSLRDRDVVLGALRDLPRA 60 Query 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAACAE 114 PV T +E L L+ R L+ RG+G D +LL S L G +WTRDKRLK E Sbjct 61 PVATPEETLYLIEREGLFNRGIGYGDTSLLASARLQPGIAIWTRDKRLKKVADE 114 >gi|107025404|ref|YP_622915.1| PilT protein-like [Burkholderia cenocepacia AU 1054] gi|116693413|ref|YP_838946.1| PilT domain-containing protein [Burkholderia cenocepacia HI2424] gi|105894778|gb|ABF77942.1| PilT protein-like protein [Burkholderia cenocepacia AU 1054] gi|116651413|gb|ABK12053.1| PilT protein domain protein [Burkholderia cenocepacia HI2424] Length=123 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 58/112 (52%), Positives = 74/112 (67%), Gaps = 0/112 (0%) Query 1 VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF 60 +ILVDTSVWI+HLRA DA L LL + HP ++ ELALGS++ R+ VLD L +L Sbjct 1 MILVDTSVWIDHLRAGDATLTALLEAERVLIHPFIVGELALGSMRHRETVLDALRDLPAA 60 Query 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAAC 112 + T DEV R++ L G G+G VDA+LL S L +RLWTRD+RL AA Sbjct 61 TLATDDEVQRMIDAVPLHGLGIGYVDAHLLASARLTSDSRLWTRDRRLLAAA 112 >gi|254249823|ref|ZP_04943143.1| PilT protein, N-terminal [Burkholderia cenocepacia PC184] gi|124876324|gb|EAY66314.1| PilT protein, N-terminal [Burkholderia cenocepacia PC184] Length=123 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 58/112 (52%), Positives = 74/112 (67%), Gaps = 0/112 (0%) Query 1 VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF 60 +ILVDTSVWI+HLRA DA L LL + HP ++ ELALGS++ R+ VLD L +L Sbjct 1 MILVDTSVWIDHLRAGDATLTALLEAERVLNHPFIVGELALGSMRNRETVLDALRDLPAA 60 Query 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAAC 112 + T DEV R++ L G G+G VDA+LL S L +RLWTRD+RL AA Sbjct 61 TLATDDEVQRMIDAVPLHGLGIGYVDAHLLASARLTSDSRLWTRDRRLLAAA 112 >gi|329894756|ref|ZP_08270558.1| PIN domain protein [gamma proteobacterium IMCC3088] gi|328922803|gb|EGG30135.1| PIN domain protein [gamma proteobacterium IMCC3088] Length=120 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 56/114 (50%), Positives = 74/114 (65%), Gaps = 0/114 (0%) Query 1 VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF 60 +ILVDTSVWI+HLR+ D L +LL + HP VI ELA G++ R VL LLA+L + Sbjct 1 MILVDTSVWIDHLRSGDKLLAQLLDSTQVLTHPFVIGELACGNLGNRTEVLALLADLPRV 60 Query 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAACAE 114 T +EVL + + +L GRG+G +DA+LL S L G ++WTRDKRL A E Sbjct 61 VTATDEEVLFFIEQHQLMGRGVGYIDAHLLSSTFLGGPTKIWTRDKRLAALAVE 114 >gi|170737308|ref|YP_001778568.1| PilT domain-containing protein [Burkholderia cenocepacia MC0-3] gi|169819496|gb|ACA94078.1| PilT protein domain protein [Burkholderia cenocepacia MC0-3] Length=123 Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 57/112 (51%), Positives = 73/112 (66%), Gaps = 0/112 (0%) Query 1 VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF 60 +ILVDTSVWI+HLR DA L LL + HP ++ ELALGS++ R+ VLD L +L Sbjct 1 MILVDTSVWIDHLRGGDATLTALLEAERVLIHPFIVGELALGSMRNRETVLDALRDLPAA 60 Query 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAAC 112 + T DEV R++ L G G+G VDA+LL S L +RLWTRD+RL AA Sbjct 61 TLATDDEVQRMIDAVPLHGLGIGYVDAHLLASARLTSDSRLWTRDRRLLAAA 112 >gi|258592601|emb|CBE68910.1| PilT protein-like [NC10 bacterium 'Dutch sediment'] Length=118 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 57/119 (48%), Positives = 77/119 (65%), Gaps = 1/119 (0%) Query 1 VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF 60 +ILVDTSVWIE LR RL LL D++ CHP +I ELA G+++ R +L LL+ L Q Sbjct 1 MILVDTSVWIEQLRRGSERLQSLLYDEQVLCHPFIIGELACGTLRNRQEILRLLSVLPQV 60 Query 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGVAL 119 V H+EV+ LV R L+GRGLG VD +LL S +++ LWT DKRL+ A +++ Sbjct 61 LVADHEEVVHLVEGRHLYGRGLGWVDVHLLAS-SILTRCTLWTLDKRLRQVAAALKISM 118 >gi|254418320|ref|ZP_05032044.1| hypothetical protein BBAL3_630 [Brevundimonas sp. BAL3] gi|196184497|gb|EDX79473.1| hypothetical protein BBAL3_630 [Brevundimonas sp. BAL3] Length=123 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 54/112 (49%), Positives = 71/112 (64%), Gaps = 0/112 (0%) Query 1 VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF 60 +IL D+SVWI HLR+ D LVE L + CHP +I ELA G++ R LD L+ L Sbjct 1 MILADSSVWIAHLRSTDQTLVERLRGEGILCHPAIIGELAAGNLANRRAFLDQLSRLPTA 60 Query 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAAC 112 +H EVL L+ + RL+G G+G +D +LL S L GARLWTRD+RL+ A Sbjct 61 VAASHQEVLTLIEKNRLFGIGVGYLDLHLLASTRLTPGARLWTRDRRLQEAA 112 >gi|294012927|ref|YP_003546387.1| putative nucleic-acid-binding protein [Sphingobium japonicum UT26S] gi|292676257|dbj|BAI97775.1| putative nucleic-acid-binding protein [Sphingobium japonicum UT26S] Length=123 Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 54/117 (47%), Positives = 73/117 (63%), Gaps = 0/117 (0%) Query 1 VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF 60 +ILVDTSVWI+HLR D L + L + HP +I ELALGS++QRD++L+ L L Sbjct 1 MILVDTSVWIDHLRHDDPVLSQSLSKRQVLSHPFIIGELALGSLRQRDLILEALRGLPSV 60 Query 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGV 117 V +EV + RL+G G+G +DA+LL + L + WTRDKRL+AA GV Sbjct 61 IVAHDEEVHAFIDLHRLFGIGIGYIDAHLLAATLLTPDVQFWTRDKRLRAAALRLGV 117 >gi|154247846|ref|YP_001418804.1| PilT domain-containing protein [Xanthobacter autotrophicus Py2] gi|154161931|gb|ABS69147.1| PilT protein domain protein [Xanthobacter autotrophicus Py2] Length=121 Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 55/120 (46%), Positives = 73/120 (61%), Gaps = 0/120 (0%) Query 1 VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF 60 +ILVDTS+WI+H R + L E L E HP VI EL LG+ + R+ +L LA+L Sbjct 1 MILVDTSIWIDHFRTGETHLAERLEAGEILTHPFVIYELVLGNFRNRNTILGALADLPSA 60 Query 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGVALA 120 V EVL L+ L+GRG+G VDA+L+ SV L ARLWTRD+RL E G+ ++ Sbjct 61 MVANDAEVLALIEAASLYGRGIGLVDAHLIASVRLTPDARLWTRDRRLGVIADELGLDIS 120 >gi|218666342|ref|YP_002426005.1| PIN domain protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|218518555|gb|ACK79141.1| PIN domain protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|339834511|gb|EGQ62272.1| PIN domain protein [Acidithiobacillus sp. GGI-221] Length=124 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 55/124 (45%), Positives = 73/124 (59%), Gaps = 1/124 (0%) Query 1 VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF 60 +ILVDTSVWI+H R+ DA L LL H +I E+A G++K R L LL+ L + Sbjct 1 MILVDTSVWIDHFRSGDAHLSTLLDHAMVQTHDFIIGEIACGNLKNRQQTLYLLSGLPRC 60 Query 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGVALA 120 + +E L +GR L GRG+G +DA++L S LV A LW+RDKRL A E G A + Sbjct 61 TATSPEETLFFIGRHGLMGRGIGYIDASILASAMLV-QANLWSRDKRLMALATELGCAYS 119 Query 121 EEVS 124 S Sbjct 120 PTSS 123 >gi|198283413|ref|YP_002219734.1| PilT protein domain-containing protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198247934|gb|ACH83527.1| PilT protein domain protein [Acidithiobacillus ferrooxidans ATCC 53993] Length=124 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 54/124 (44%), Positives = 73/124 (59%), Gaps = 1/124 (0%) Query 1 VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF 60 +ILVDTSVWI+H R+ DA L LL H +I E+A G++K R L LL+ L + Sbjct 1 MILVDTSVWIDHFRSGDAHLSTLLDHAMVQTHDFIIGEIACGNLKNRQQTLYLLSGLPRC 60 Query 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGVALA 120 + +E L +GR L GRG+G +DA++L S LV A LW+RD+RL A E G A + Sbjct 61 TATSPEETLFFIGRHSLMGRGIGYIDASILASAMLV-QANLWSRDRRLMALATELGCAYS 119 Query 121 EEVS 124 S Sbjct 120 PTSS 123 >gi|121583527|ref|YP_973953.1| PilT domain-containing protein [Polaromonas naphthalenivorans CJ2] gi|120596777|gb|ABM40211.1| PilT protein domain protein [Polaromonas naphthalenivorans CJ2] Length=126 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 50/112 (45%), Positives = 68/112 (61%), Gaps = 0/112 (0%) Query 2 ILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQFP 61 +LVDTSVW+ H + + RL LL D CHP V+ E+A G+ R ++ +LA L P Sbjct 3 VLVDTSVWVGHFKQRNERLAALLEDGRVVCHPYVVTEVACGTPPNRRAIIAMLAELESGP 62 Query 62 VVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAACA 113 + T DE+L L+ RR L+GRG G VD +LL S L +WT DKRL++ A Sbjct 63 LATPDEILELIERRGLYGRGCGFVDMSLLASALLSDQTLIWTLDKRLESVAA 114 >gi|18121449|gb|AAK52345.1| unknown [Burkholderia sacchari] Length=123 Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 52/118 (45%), Positives = 70/118 (60%), Gaps = 0/118 (0%) Query 1 VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF 60 +ILVDTS+WI+H AAD L LL D+ H VI E++LG+++ R+ VL L +L Sbjct 1 MILVDTSIWIDHFNAADPLLTSLLTDERVLAHAYVIGEISLGNLRDRNTVLCALRDLPAV 60 Query 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGVA 118 P T +E L+ +L RG+G VD +LL S L G +WTRDKRL E G+A Sbjct 61 PTATPEETFYLIEHAKLSNRGIGYVDTSLLASARLQPGVTIWTRDKRLGKVAGELGLA 118 >gi|315606071|ref|ZP_07881102.1| PilT protein family protein [Actinomyces sp. oral taxon 180 str. F0310] gi|315312353|gb|EFU60439.1| PilT protein family protein [Actinomyces sp. oral taxon 180 str. F0310] Length=123 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 57/116 (50%), Positives = 69/116 (60%), Gaps = 0/116 (0%) Query 2 ILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQFP 61 ILVD +VWI+HLR D LV+LL D+ H VI ELALG++K R + L L L Sbjct 3 ILVDANVWIDHLRTTDPVLVDLLERDQVCVHQSVITELALGNLKDRSIFLGALERLLIVR 62 Query 62 VVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGV 117 V V + RRLWGRGL AV+A LL SV + G LWTRDK L+ A + GV Sbjct 63 NVDDQGVRHFIEERRLWGRGLSAVNAALLASVVVTPGVSLWTRDKCLRQAARDVGV 118 >gi|198282373|ref|YP_002218694.1| PilT protein domain-containing protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198246894|gb|ACH82487.1| PilT protein domain protein [Acidithiobacillus ferrooxidans ATCC 53993] Length=124 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 54/124 (44%), Positives = 73/124 (59%), Gaps = 1/124 (0%) Query 1 VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF 60 +ILVDTSVWI+H R+ DA L LL H +I E+A G++K R L LL+ L + Sbjct 1 MILVDTSVWIDHFRSGDAHLSTLLDHAMVQTHDFIIGEIACGNLKNRQQTLYLLSCLPRC 60 Query 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGVALA 120 + +E L +GR L GRG+G +DA++L S LV A LW+RD+RL A E G A + Sbjct 61 TATSPEETLFFIGRHGLMGRGIGYIDASILASAMLV-QANLWSRDRRLMALATELGCAYS 119 Query 121 EEVS 124 S Sbjct 120 PTAS 123 >gi|325982850|ref|YP_004295252.1| PilT protein domain-containing protein [Nitrosomonas sp. AL212] gi|325532369|gb|ADZ27090.1| PilT protein domain protein [Nitrosomonas sp. AL212] Length=124 Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 52/106 (50%), Positives = 67/106 (64%), Gaps = 0/106 (0%) Query 1 VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF 60 +ILVDTSVWI HLR D LV LL + HP V ELALG+++QR+ +L L NL Q Sbjct 1 MILVDTSVWINHLRNNDPHLVRLLTGNSVLGHPFVRGELALGNLRQRNEILSALENLPQA 60 Query 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDK 106 V +EV + + L+G G+G +DA+LL S L G RLWT+DK Sbjct 61 AVAFDNEVNFFIEQHALFGLGIGLIDAHLLASTRLSGNTRLWTQDK 106 >gi|241763424|ref|ZP_04761478.1| PilT protein domain protein [Acidovorax delafieldii 2AN] gi|241367366|gb|EER61687.1| PilT protein domain protein [Acidovorax delafieldii 2AN] Length=122 Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 59/121 (49%), Positives = 73/121 (61%), Gaps = 1/121 (0%) Query 2 ILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQFP 61 +LVDTSVWI+HLR +A L L + HP V+ ELA GS++ R VL LL L Q Sbjct 1 MLVDTSVWIDHLRHGEAELTAALQAGQVDMHPFVVGELACGSLRARAEVLGLLQALPQLR 60 Query 62 VVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGVALAE 121 V T EVL + L GRG+G VD +LL + A +G LWTRDKRL A AE G+A E Sbjct 61 VTTDREVLFFMDAHALMGRGIGYVDMHLLAA-ARLGAQLLWTRDKRLHAIAAELGLAHTE 119 Query 122 E 122 + Sbjct 120 K 120 >gi|171057321|ref|YP_001789670.1| PilT domain-containing protein [Leptothrix cholodnii SP-6] gi|170774766|gb|ACB32905.1| PilT protein domain protein [Leptothrix cholodnii SP-6] Length=126 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 51/113 (46%), Positives = 68/113 (61%), Gaps = 0/113 (0%) Query 2 ILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQFP 61 +LVDTSVW+ H + + RLV LL CHP V+ E+A G+ ++++LA L P Sbjct 3 VLVDTSVWVGHFKQRNERLVALLEAGLVVCHPYVVVEIACGTPPGWQSIIEMLAELESVP 62 Query 62 VVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAACAE 114 V DE+ L+ RR L+GRG G VD +LL S L R+WT DKRL+A AE Sbjct 63 VAAPDELRALIERRALFGRGCGFVDVSLLASALLKDQTRIWTLDKRLEAVAAE 115 >gi|222056352|ref|YP_002538714.1| PilT protein domain protein [Geobacter sp. FRC-32] gi|221565641|gb|ACM21613.1| PilT protein domain protein [Geobacter sp. FRC-32] Length=117 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 50/108 (47%), Positives = 67/108 (63%), Gaps = 1/108 (0%) Query 1 VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF 60 +ILVDTSVW+EH R+ L L D + CHP +I ELA G++K R +L LL +L + Sbjct 1 MILVDTSVWVEHFRSGAVGLETFLNDGQVICHPFIIGELACGNLKNRTQILSLLQDLPKA 60 Query 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRL 108 DEV+R + +L G+GLG +D +LL S AL+ LWT DKRL Sbjct 61 FCADDDEVIRFIDDHKLMGKGLGYIDIHLLMS-ALLTQVPLWTMDKRL 107 >gi|158520428|ref|YP_001528298.1| PilT domain-containing protein [Desulfococcus oleovorans Hxd3] gi|158509254|gb|ABW66221.1| PilT protein domain protein [Desulfococcus oleovorans Hxd3] Length=125 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 52/122 (43%), Positives = 65/122 (54%), Gaps = 1/122 (0%) Query 1 VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF 60 ++LVDTSVW+ H R L LL D CHPL++ ELA G++K R V+L L L Sbjct 1 MVLVDTSVWVAHFRDGSPGLAALLNDGRVMCHPLIVGELACGNLKDRAVILTHLQLLPMS 60 Query 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGVALA 120 H EVL + L G+GLG VD +LL S AL G LWT DK+L A G+ Sbjct 61 TEAEHHEVLAFIENHHLMGKGLGYVDMHLLASAALT-GVPLWTFDKKLAQASDILGIKFT 119 Query 121 EE 122 Sbjct 120 SP 121 >gi|88704037|ref|ZP_01101752.1| conserved hypothetical protein [Congregibacter litoralis KT71] gi|88701864|gb|EAQ98968.1| conserved hypothetical protein [Congregibacter litoralis KT71] Length=118 Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 51/115 (45%), Positives = 66/115 (58%), Gaps = 0/115 (0%) Query 3 LVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQFPV 62 LVDTSVWI+H R+ + L LL D H VI ELA G +K R+ VL +L + + Sbjct 3 LVDTSVWIDHFRSDSSDLRRLLEDGMVVTHEFVIGELACGRLKDREAVLGFFESLPRVAL 62 Query 63 VTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGV 117 V+H E L VG +L G GL VD +LL S L G ++WTRD+RL A + V Sbjct 63 VSHSEFLHFVGAHQLEGTGLNFVDIHLLASSRLTEGVQIWTRDERLSRAAGDFPV 117 >gi|226946670|ref|YP_002801743.1| PIN-domain-containing protein [Azotobacter vinelandii DJ] gi|226721597|gb|ACO80768.1| PIN-domain protein [Azotobacter vinelandii DJ] Length=126 Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 52/110 (48%), Positives = 65/110 (60%), Gaps = 1/110 (0%) Query 2 ILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIK-QRDVVLDLLANLYQF 60 +LVDTSVWI+H R +A LVELLG D+A HP+VI E+A G+ R LD L L Sbjct 3 VLVDTSVWIDHFRNGNAALVELLGSDDALTHPMVIAEIACGTPPAPRAQTLDNLGLLQSC 62 Query 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKA 110 T EV+ + R +L+G G G VD LL S + G LWT DKRL + Sbjct 63 RQATLQEVMTFIEREKLYGLGCGLVDIALLASTLITPGTLLWTLDKRLAS 112 >gi|103486190|ref|YP_615751.1| PilT protein-like protein [Sphingopyxis alaskensis RB2256] gi|98976267|gb|ABF52418.1| PilT protein-like protein [Sphingopyxis alaskensis RB2256] Length=121 Score = 90.5 bits (223), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 53/108 (50%), Positives = 69/108 (64%), Gaps = 0/108 (0%) Query 1 VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF 60 +IL+D+SVWI+HLR+A+A L L + HP V ELALGS+ RD + +L L Sbjct 1 MILIDSSVWIDHLRSANAGLALALAEGRIVQHPFVTAELALGSLASRDRFVAMLGLLSPA 60 Query 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRL 108 PVV +L + RL+G GLG VDA+LL S A +G ARLWT D+RL Sbjct 61 PVVESARLLDFITNHRLFGTGLGMVDAHLLASTAELGAARLWTSDRRL 108 >gi|124516228|gb|EAY57736.1| probable PilT protein [Leptospirillum rubarum] Length=124 Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 51/114 (45%), Positives = 67/114 (59%), Gaps = 1/114 (0%) Query 1 VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF 60 +ILVDTSVWI+H R + L ++L + H ++ ELALG + R VL LL +L + Sbjct 1 MILVDTSVWIDHFRTGNIHLRKILEQESVSIHDFILGELALGHFRDRQNVLSLLVSLPRC 60 Query 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAACAE 114 +E+L LV RL GRG+G VDA LL S L G RLWT DK+L + E Sbjct 61 TCANPEEILWLVEHHRLMGRGIGYVDACLLASAKLT-GFRLWTMDKKLASIAKE 113 >gi|148265880|ref|YP_001232586.1| PilT domain-containing protein [Geobacter uraniireducens Rf4] gi|146399380|gb|ABQ28013.1| PilT protein domain protein [Geobacter uraniireducens Rf4] Length=118 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 52/111 (47%), Positives = 67/111 (61%), Gaps = 1/111 (0%) Query 1 VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQF 60 +ILVDTSVW+EHLR+ L LL D + HP VI ELA G++K R +L LL +L Sbjct 1 MILVDTSVWVEHLRSGTIGLDALLTDGQVVIHPFVIGELACGNLKNRTEILSLLQDLPMA 60 Query 61 PVVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAA 111 DEV+ + +L G+GLG +D +LL S AL+ LWT DKRL A Sbjct 61 SCADDDEVIEFINDHKLMGKGLGYIDIHLLMS-ALLTRIPLWTIDKRLHEA 110 >gi|334129421|ref|ZP_08503226.1| hypothetical protein METUNv1_00219 [Methyloversatilis universalis FAM5] gi|333445647|gb|EGK73588.1| hypothetical protein METUNv1_00219 [Methyloversatilis universalis FAM5] Length=126 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 53/117 (46%), Positives = 65/117 (56%), Gaps = 0/117 (0%) Query 2 ILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQFP 61 ILVDTSVW++H R + L+ LL D HPL+I ELA G+ R L LA+L Sbjct 4 ILVDTSVWVDHFRHGNDTLIGLLDRDLVLIHPLIIGELACGTPPSRAQTLTDLASLQPAR 63 Query 62 VVTHDEVLRLVGRRRLWGRGLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGVA 118 + EVL + R L+G G G VD +LL S + GARLWT DKRL GVA Sbjct 64 QASAAEVLAFIDREHLFGLGCGIVDMHLLASTLITQGARLWTLDKRLDMLAERFGVA 120 Lambda K H 0.322 0.139 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 130872486112 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40