BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1116

Length=61
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15840553|ref|NP_335590.1|  hypothetical protein MT1147 [Mycoba...   123    9e-27
gi|15608256|ref|NP_215632.1|  hypothetical protein Rv1116 [Mycoba...   123    1e-26


>gi|15840553|ref|NP_335590.1| hypothetical protein MT1147 [Mycobacterium tuberculosis CDC1551]
 gi|167969251|ref|ZP_02551528.1| hypothetical protein MtubH3_14975 [Mycobacterium tuberculosis 
H37Ra]
 gi|289555097|ref|ZP_06444307.1| hypothetical protein TBXG_02847 [Mycobacterium tuberculosis KZN 
605]
 gi|289744859|ref|ZP_06504237.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|13880731|gb|AAK45404.1| hypothetical protein MT1147 [Mycobacterium tuberculosis CDC1551]
 gi|289439729|gb|EFD22222.1| hypothetical protein TBXG_02847 [Mycobacterium tuberculosis KZN 
605]
 gi|289685387|gb|EFD52875.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
Length=77

 Score =  123 bits (309),  Expect = 9e-27, Method: Compositional matrix adjust.
 Identities = 61/61 (100%), Positives = 61/61 (100%), Gaps = 0/61 (0%)

Query  1   MCSRMADEPRLEAGAHPFEEGRDKAPELRATQMDHVRFTEGRRERNRDRLERSQQFRQPG  60
           MCSRMADEPRLEAGAHPFEEGRDKAPELRATQMDHVRFTEGRRERNRDRLERSQQFRQPG
Sbjct  17  MCSRMADEPRLEAGAHPFEEGRDKAPELRATQMDHVRFTEGRRERNRDRLERSQQFRQPG  76

Query  61  R  61
           R
Sbjct  77  R  77


>gi|15608256|ref|NP_215632.1| hypothetical protein Rv1116 [Mycobacterium tuberculosis H37Rv]
 gi|31792309|ref|NP_854802.1| hypothetical protein Mb1146 [Mycobacterium bovis AF2122/97]
 gi|121637047|ref|YP_977270.1| hypothetical protein BCG_1176 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 41 more sequence titles
 Length=61

 Score =  123 bits (308),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 61/61 (100%), Positives = 61/61 (100%), Gaps = 0/61 (0%)

Query  1   MCSRMADEPRLEAGAHPFEEGRDKAPELRATQMDHVRFTEGRRERNRDRLERSQQFRQPG  60
           MCSRMADEPRLEAGAHPFEEGRDKAPELRATQMDHVRFTEGRRERNRDRLERSQQFRQPG
Sbjct  1   MCSRMADEPRLEAGAHPFEEGRDKAPELRATQMDHVRFTEGRRERNRDRLERSQQFRQPG  60

Query  61  R  61
           R
Sbjct  61  R  61



Lambda     K      H
   0.320    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 132083333032


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40