BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1126c
Length=201
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608266|ref|NP_215642.1| hypothetical protein Rv1126c [Mycob... 400 7e-110
gi|308375370|ref|ZP_07443662.2| hypothetical protein TMGG_03209 ... 381 3e-104
gi|240172950|ref|ZP_04751608.1| hypothetical protein MkanA1_2679... 290 1e-76
gi|183984303|ref|YP_001852594.1| hypothetical protein MMAR_4332 ... 287 7e-76
gi|118616039|ref|YP_904371.1| hypothetical protein MUL_0142 [Myc... 284 6e-75
gi|296169998|ref|ZP_06851603.1| conserved hypothetical protein [... 272 2e-71
gi|254823163|ref|ZP_05228164.1| hypothetical protein MintA_24759... 266 1e-69
gi|342861715|ref|ZP_08718361.1| hypothetical protein MCOL_22616 ... 266 2e-69
gi|118463406|ref|YP_880503.1| hypothetical protein MAV_1258 [Myc... 261 5e-68
gi|254774135|ref|ZP_05215651.1| hypothetical protein MaviaA2_056... 259 1e-67
gi|41408763|ref|NP_961599.1| hypothetical protein MAP2665 [Mycob... 255 3e-66
gi|118462876|ref|YP_881178.1| hypothetical protein MAV_1959 [Myc... 254 6e-66
gi|126436673|ref|YP_001072364.1| hypothetical protein Mjls_4100 ... 240 1e-61
gi|333992423|ref|YP_004525037.1| hypothetical protein JDM601_378... 236 1e-60
gi|296165499|ref|ZP_06848030.1| conserved hypothetical protein [... 232 2e-59
gi|226304291|ref|YP_002764249.1| hypothetical protein RER_08020 ... 169 2e-40
gi|226361867|ref|YP_002779645.1| hypothetical protein ROP_24530 ... 154 9e-36
gi|333992395|ref|YP_004525009.1| hypothetical protein JDM601_375... 146 2e-33
gi|118463559|ref|YP_884176.1| hypothetical protein MAV_5058 [Myc... 129 2e-28
gi|115360968|ref|YP_778105.1| hypothetical protein Bamb_6227 [Bu... 114 5e-24
gi|336176157|ref|YP_004581532.1| hypothetical protein FsymDg_001... 111 5e-23
gi|2052113|emb|CAB08133.1| unknown [Mycobacterium leprae] 108 6e-22
gi|302541541|ref|ZP_07293883.1| conserved hypothetical protein [... 105 4e-21
gi|269126797|ref|YP_003300167.1| hypothetical protein Tcur_2569 ... 104 6e-21
gi|331695403|ref|YP_004331642.1| hypothetical protein Psed_1551 ... 104 7e-21
gi|256826141|ref|YP_003150101.1| hypothetical protein Ksed_23650... 103 2e-20
gi|331695934|ref|YP_004332173.1| hypothetical protein Psed_2095 ... 99.4 2e-19
gi|336116174|ref|YP_004570940.1| hypothetical protein MLP_05230 ... 98.2 6e-19
gi|271966470|ref|YP_003340666.1| hypothetical protein Sros_5145 ... 94.7 7e-18
gi|226305305|ref|YP_002765263.1| hypothetical protein RER_18160 ... 94.4 1e-17
gi|229818580|ref|YP_002880106.1| transcriptional regulator [Beut... 92.0 5e-17
gi|284030881|ref|YP_003380812.1| hypothetical protein Kfla_2948 ... 90.5 1e-16
gi|297153485|gb|ADI03197.1| hypothetical protein SBI_00076 [Stre... 87.8 7e-16
gi|229490750|ref|ZP_04384588.1| conserved hypothetical protein [... 87.4 1e-15
gi|258652566|ref|YP_003201722.1| hypothetical protein Namu_2358 ... 85.9 3e-15
gi|226365553|ref|YP_002783336.1| hypothetical protein ROP_61440 ... 84.7 7e-15
gi|328880595|emb|CCA53834.1| hypothetical protein SVEN_0547 [Str... 84.3 1e-14
gi|111023049|ref|YP_706021.1| hypothetical protein RHA1_ro06086 ... 83.6 2e-14
gi|312140945|ref|YP_004008281.1| hypothetical protein REQ_36130 ... 83.6 2e-14
gi|296128325|ref|YP_003635575.1| putative transcriptional regula... 83.2 2e-14
gi|332668937|ref|YP_004451945.1| hypothetical protein Celf_0415 ... 80.9 1e-13
gi|226362387|ref|YP_002780165.1| hypothetical protein ROP_29730 ... 79.7 2e-13
gi|124263070|ref|YP_001023540.1| hypothetical protein Mpe_B0535 ... 79.0 4e-13
gi|294816267|ref|ZP_06774910.1| Putative transcriptional regulat... 79.0 4e-13
gi|269957214|ref|YP_003327003.1| hypothetical protein Xcel_2430 ... 75.1 6e-12
gi|159040054|ref|YP_001539307.1| hypothetical protein Sare_4548 ... 74.3 1e-11
gi|226349957|ref|YP_002777070.1| hypothetical protein ROP_pROB02... 68.2 6e-10
gi|119964427|ref|YP_949773.1| hypothetical protein AAur_4106 [Ar... 62.8 3e-08
gi|217979551|ref|YP_002363698.1| hypothetical protein Msil_3441 ... 48.9 4e-04
gi|238059912|ref|ZP_04604621.1| hypothetical protein MCAG_00878 ... 48.5 6e-04
>gi|15608266|ref|NP_215642.1| hypothetical protein Rv1126c [Mycobacterium tuberculosis H37Rv]
gi|15840564|ref|NP_335601.1| hypothetical protein MT1158 [Mycobacterium tuberculosis CDC1551]
gi|31792320|ref|NP_854813.1| hypothetical protein Mb1157c [Mycobacterium bovis AF2122/97]
78 more sequence titles
Length=201
Score = 400 bits (1027), Expect = 7e-110, Method: Compositional matrix adjust.
Identities = 201/201 (100%), Positives = 201/201 (100%), Gaps = 0/201 (0%)
Query 1 MSELTVLQAVRLKGRVITTDLAQTLGEDLADVAATVDRLTAAGLLVDATPLRISPSGRMR 60
MSELTVLQAVRLKGRVITTDLAQTLGEDLADVAATVDRLTAAGLLVDATPLRISPSGRMR
Sbjct 1 MSELTVLQAVRLKGRVITTDLAQTLGEDLADVAATVDRLTAAGLLVDATPLRISPSGRMR 60
Query 61 LDDLLAEERNRADSTVLAAAYRDFRSVNADFKRLVTDWQLKGEKPNTHDDAEYDAAVLSR 120
LDDLLAEERNRADSTVLAAAYRDFRSVNADFKRLVTDWQLKGEKPNTHDDAEYDAAVLSR
Sbjct 61 LDDLLAEERNRADSTVLAAAYRDFRSVNADFKRLVTDWQLKGEKPNTHDDAEYDAAVLSR 120
Query 121 LDGVHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDSYHTVWFELH 180
LDGVHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDSYHTVWFELH
Sbjct 121 LDGVHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDSYHTVWFELH 180
Query 181 EELIQAVGLTRDEAAKSGDAQ 201
EELIQAVGLTRDEAAKSGDAQ
Sbjct 181 EELIQAVGLTRDEAAKSGDAQ 201
>gi|308375370|ref|ZP_07443662.2| hypothetical protein TMGG_03209 [Mycobacterium tuberculosis SUMu007]
gi|308346574|gb|EFP35425.1| hypothetical protein TMGG_03209 [Mycobacterium tuberculosis SUMu007]
Length=192
Score = 381 bits (979), Expect = 3e-104, Method: Compositional matrix adjust.
Identities = 191/192 (99%), Positives = 192/192 (100%), Gaps = 0/192 (0%)
Query 10 VRLKGRVITTDLAQTLGEDLADVAATVDRLTAAGLLVDATPLRISPSGRMRLDDLLAEER 69
+RLKGRVITTDLAQTLGEDLADVAATVDRLTAAGLLVDATPLRISPSGRMRLDDLLAEER
Sbjct 1 MRLKGRVITTDLAQTLGEDLADVAATVDRLTAAGLLVDATPLRISPSGRMRLDDLLAEER 60
Query 70 NRADSTVLAAAYRDFRSVNADFKRLVTDWQLKGEKPNTHDDAEYDAAVLSRLDGVHRRVG 129
NRADSTVLAAAYRDFRSVNADFKRLVTDWQLKGEKPNTHDDAEYDAAVLSRLDGVHRRVG
Sbjct 61 NRADSTVLAAAYRDFRSVNADFKRLVTDWQLKGEKPNTHDDAEYDAAVLSRLDGVHRRVG 120
Query 130 PIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDSYHTVWFELHEELIQAVGL 189
PIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDSYHTVWFELHEELIQAVGL
Sbjct 121 PIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDSYHTVWFELHEELIQAVGL 180
Query 190 TRDEAAKSGDAQ 201
TRDEAAKSGDAQ
Sbjct 181 TRDEAAKSGDAQ 192
>gi|240172950|ref|ZP_04751608.1| hypothetical protein MkanA1_26794 [Mycobacterium kansasii ATCC
12478]
Length=215
Score = 290 bits (741), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 146/199 (74%), Positives = 161/199 (81%), Gaps = 0/199 (0%)
Query 3 ELTVLQAVRLKGRVITTDLAQTLGEDLADVAATVDRLTAAGLLVDATPLRISPSGRMRLD 62
+ VLQAVRLKGRV TDLA TLGEDL + VD+LTA+GLL++ LRISPSGR RL+
Sbjct 17 HVKVLQAVRLKGRVSPTDLATTLGEDLRAITEIVDQLTASGLLLEGATLRISPSGRTRLN 76
Query 63 DLLAEERNRADSTVLAAAYRDFRSVNADFKRLVTDWQLKGEKPNTHDDAEYDAAVLSRLD 122
LLAEER R D +AAAY +FRSVNADFK +VTDWQLKG +PN HDDA YD AVL+RLD
Sbjct 77 ALLAEERTRVDPAAMAAAYNEFRSVNADFKVVVTDWQLKGGQPNVHDDAGYDDAVLARLD 136
Query 123 GVHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDSYHTVWFELHEE 182
VHRRV PII A QLPRL Y KL AALDKVK+GDIAWLTRPLIDSYHTVWFELHEE
Sbjct 137 NVHRRVEPIIAAAATQLPRLHAYSAKLNAALDKVKSGDIAWLTRPLIDSYHTVWFELHEE 196
Query 183 LIQAVGLTRDEAAKSGDAQ 201
LI AVGLTR+EAA+SGDAQ
Sbjct 197 LILAVGLTREEAARSGDAQ 215
>gi|183984303|ref|YP_001852594.1| hypothetical protein MMAR_4332 [Mycobacterium marinum M]
gi|183177629|gb|ACC42739.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=201
Score = 287 bits (734), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 144/201 (72%), Positives = 166/201 (83%), Gaps = 0/201 (0%)
Query 1 MSELTVLQAVRLKGRVITTDLAQTLGEDLADVAATVDRLTAAGLLVDATPLRISPSGRMR 60
M+EL +LQA+RLKGRV DLA+T+ DLA+VA TV RLTAA LLV T LRISP GR+R
Sbjct 1 MTELAILQAIRLKGRVSPPDLAETVSLDLAEVADTVARLTAANLLVGDTTLRISPEGRVR 60
Query 61 LDDLLAEERNRADSTVLAAAYRDFRSVNADFKRLVTDWQLKGEKPNTHDDAEYDAAVLSR 120
L +LL EERN AD+T LA Y DFRSVNADFK LVT+WQL+G KPN+HDDA+YDAA+L++
Sbjct 61 LSELLTEERNAADATTLANVYSDFRSVNADFKALVTEWQLRGGKPNSHDDADYDAAILAQ 120
Query 121 LDGVHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDSYHTVWFELH 180
LD VH+RV PII T A QLPRL Y KL AAL +VKAG+ AWLTRPLIDSYHTVWFELH
Sbjct 121 LDDVHQRVEPIIATAATQLPRLHAYSRKLSAALGRVKAGETAWLTRPLIDSYHTVWFELH 180
Query 181 EELIQAVGLTRDEAAKSGDAQ 201
EELI AVGLTR++AA+SGDAQ
Sbjct 181 EELILAVGLTREQAARSGDAQ 201
>gi|118616039|ref|YP_904371.1| hypothetical protein MUL_0142 [Mycobacterium ulcerans Agy99]
gi|118568149|gb|ABL02900.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=201
Score = 284 bits (726), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 143/201 (72%), Positives = 165/201 (83%), Gaps = 0/201 (0%)
Query 1 MSELTVLQAVRLKGRVITTDLAQTLGEDLADVAATVDRLTAAGLLVDATPLRISPSGRMR 60
M+EL +LQA+RLKGRV DLA+T+ DLA+VA TV RLTAA LLV T LRISP GR+R
Sbjct 1 MTELAILQAIRLKGRVSPPDLAETVSLDLAEVADTVARLTAANLLVGDTTLRISPEGRVR 60
Query 61 LDDLLAEERNRADSTVLAAAYRDFRSVNADFKRLVTDWQLKGEKPNTHDDAEYDAAVLSR 120
L +LL EERN AD+T LA Y DFRSVNADFK LVT+WQL+G KPN+HDDA+YDAA+L++
Sbjct 61 LSELLTEERNAADATTLANVYSDFRSVNADFKALVTEWQLRGGKPNSHDDADYDAAILAQ 120
Query 121 LDGVHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDSYHTVWFELH 180
LD VH+RV PII T A QLPRL Y KL AAL +VKAG+ AWLTRPLIDSYHTVWFELH
Sbjct 121 LDDVHQRVEPIIATAATQLPRLHAYSRKLSAALGRVKAGETAWLTRPLIDSYHTVWFELH 180
Query 181 EELIQAVGLTRDEAAKSGDAQ 201
EELI AVGLTR++AA+S DAQ
Sbjct 181 EELILAVGLTREQAARSDDAQ 201
>gi|296169998|ref|ZP_06851603.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295895316|gb|EFG75024.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=204
Score = 272 bits (696), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 142/204 (70%), Positives = 158/204 (78%), Gaps = 3/204 (1%)
Query 1 MSELTVLQAVRLKGRVITTDLAQTLGEDLADVAATVDRLTAAGLLVDATPLRISPSGRMR 60
M+EL VLQAVRLKGRV +LA TL ED+A VAA V+RLTAAGLLVD +R++P+GR R
Sbjct 1 MTELAVLQAVRLKGRVRPAELAATLNEDVAGVAALVERLTAAGLLVDGATVRLTPAGRER 60
Query 61 LDDLLAEERNRADSTVLAAAYRDFRSVNADFKRLVTDWQLKGE---KPNTHDDAEYDAAV 117
L LL EER D L AAYRDFRSVNADFK LVT+WQLKG PNTHDDA+YDAAV
Sbjct 61 LAALLEEERRGTDHAALGAAYRDFRSVNADFKALVTEWQLKGGPGGSPNTHDDAQYDAAV 120
Query 118 LSRLDGVHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDSYHTVWF 177
L RLD VH RV PII A QLPRL Y KL AAL KV G+ AWLT+PL+DSYHTVWF
Sbjct 121 LDRLDDVHARVLPIIDAAAAQLPRLRGYSAKLVAALGKVHEGETAWLTKPLVDSYHTVWF 180
Query 178 ELHEELIQAVGLTRDEAAKSGDAQ 201
ELHEELI A+GLTR+EAA+SGDAQ
Sbjct 181 ELHEELISAIGLTREEAARSGDAQ 204
>gi|254823163|ref|ZP_05228164.1| hypothetical protein MintA_24759 [Mycobacterium intracellulare
ATCC 13950]
Length=204
Score = 266 bits (681), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 136/204 (67%), Positives = 159/204 (78%), Gaps = 3/204 (1%)
Query 1 MSELTVLQAVRLKGRVITTDLAQTLGEDLADVAATVDRLTAAGLLVDATPLRISPSGRMR 60
M+EL VLQ VRLKGRV TDLA TLG D D+ V++LTAAGLL + ++I+ +G R
Sbjct 1 MTELDVLQGVRLKGRVSRTDLAATLGADPGDITTIVEQLTAAGLLAEGATVQITRAGSDR 60
Query 61 LDDLLAEERNRADSTVLAAAYRDFRSVNADFKRLVTDWQLKGEK---PNTHDDAEYDAAV 117
L LLAEER D+ +AAAY+DFR+VNADFKRLVTDWQL+G PNTHDDAEYDAAV
Sbjct 61 LATLLAEEREGIDAGAMAAAYKDFRAVNADFKRLVTDWQLRGGPGGVPNTHDDAEYDAAV 120
Query 118 LSRLDGVHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDSYHTVWF 177
L+RLD VH R PI+ A QLPRL+ Y KL AALDK+KAG+ +WL RPL+DSYHTVWF
Sbjct 121 LARLDDVHARAVPIVEAAAAQLPRLNAYATKLAAALDKIKAGETSWLARPLVDSYHTVWF 180
Query 178 ELHEELIQAVGLTRDEAAKSGDAQ 201
ELHEELI AVGLTR+EAA+SGDAQ
Sbjct 181 ELHEELIVAVGLTREEAARSGDAQ 204
>gi|342861715|ref|ZP_08718361.1| hypothetical protein MCOL_22616 [Mycobacterium colombiense CECT
3035]
gi|342130849|gb|EGT84145.1| hypothetical protein MCOL_22616 [Mycobacterium colombiense CECT
3035]
Length=204
Score = 266 bits (679), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 139/204 (69%), Positives = 156/204 (77%), Gaps = 3/204 (1%)
Query 1 MSELTVLQAVRLKGRVITTDLAQTLGEDLADVAATVDRLTAAGLLVDATPLRISPSGRMR 60
M+EL VLQ VRLKGRV DLA TLG D+AD+ V+RLTAAGLL + LRI+ SG R
Sbjct 1 MTELAVLQGVRLKGRVSPADLAATLGTDVADITPVVERLTAAGLLTEGETLRITLSGTER 60
Query 61 LDDLLAEERNRADSTVLAAAYRDFRSVNADFKRLVTDWQLKGEK---PNTHDDAEYDAAV 117
L LLAEER D +AAAY DFR+VN D KRLVTDWQLKG PNTHDDA+YD AV
Sbjct 61 LTALLAEERKGIDPRAMAAAYDDFRAVNEDLKRLVTDWQLKGGPDGVPNTHDDADYDTAV 120
Query 118 LSRLDGVHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDSYHTVWF 177
L+RLD VH RV P++ A QLPRL Y KL AALDK+KAG+ AWL+RPLIDSYHTVWF
Sbjct 121 LARLDDVHARVLPVVEAAAAQLPRLGAYATKLVAALDKIKAGETAWLSRPLIDSYHTVWF 180
Query 178 ELHEELIQAVGLTRDEAAKSGDAQ 201
ELHEELI AVGLTR+EAA+SGDAQ
Sbjct 181 ELHEELIVAVGLTREEAARSGDAQ 204
>gi|118463406|ref|YP_880503.1| hypothetical protein MAV_1258 [Mycobacterium avium 104]
gi|118164693|gb|ABK65590.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=201
Score = 261 bits (666), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 139/201 (70%), Positives = 157/201 (79%), Gaps = 0/201 (0%)
Query 1 MSELTVLQAVRLKGRVITTDLAQTLGEDLADVAATVDRLTAAGLLVDATPLRISPSGRMR 60
M+EL VLQA+RLKGRV DLA TLG D ++A TV+RL+AAGL+ LRI+P+G R
Sbjct 1 MTELAVLQAIRLKGRVSRADLAATLGTDPDEIAGTVERLSAAGLVTGDATLRITPAGSAR 60
Query 61 LDDLLAEERNRADSTVLAAAYRDFRSVNADFKRLVTDWQLKGEKPNTHDDAEYDAAVLSR 120
L LLAEER D+ +AA Y DFR++NADFKRLVTDWQLK PN HDDAEYDAAVL+R
Sbjct 61 LTALLAEERRGIDAAAMAAVYDDFRAINADFKRLVTDWQLKDGAPNRHDDAEYDAAVLAR 120
Query 121 LDGVHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDSYHTVWFELH 180
LD H RV P+I A QLPRL+RY KL AAL KV+AGD AWLTRPLIDSYHTVWFELH
Sbjct 121 LDDAHARVTPVIEAAAAQLPRLNRYAAKLAAALGKVRAGDTAWLTRPLIDSYHTVWFELH 180
Query 181 EELIQAVGLTRDEAAKSGDAQ 201
EELI AVGLTR EAA+SGDAQ
Sbjct 181 EELIVAVGLTRQEAARSGDAQ 201
>gi|254774135|ref|ZP_05215651.1| hypothetical protein MaviaA2_05600 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=201
Score = 259 bits (662), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 138/201 (69%), Positives = 157/201 (79%), Gaps = 0/201 (0%)
Query 1 MSELTVLQAVRLKGRVITTDLAQTLGEDLADVAATVDRLTAAGLLVDATPLRISPSGRMR 60
M+EL VLQA+RLKGRV DLA TLG D ++A TV+RL+AAGL+ LRI+P+G R
Sbjct 1 MTELAVLQAIRLKGRVSRADLAATLGTDPDEIAGTVERLSAAGLVTGDATLRITPAGSAR 60
Query 61 LDDLLAEERNRADSTVLAAAYRDFRSVNADFKRLVTDWQLKGEKPNTHDDAEYDAAVLSR 120
L LLAEER D+ +AA Y DFR++NADFKRLVTDWQLK PN HD+AEYDAAVL+R
Sbjct 61 LTALLAEERRGIDAAAMAAVYDDFRAINADFKRLVTDWQLKDGAPNRHDEAEYDAAVLAR 120
Query 121 LDGVHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDSYHTVWFELH 180
LD H RV P+I A QLPRL+RY KL AAL KV+AGD AWLTRPLIDSYHTVWFELH
Sbjct 121 LDDAHARVTPVIEAAAAQLPRLNRYAAKLAAALGKVRAGDTAWLTRPLIDSYHTVWFELH 180
Query 181 EELIQAVGLTRDEAAKSGDAQ 201
EELI AVGLTR EAA+SGDAQ
Sbjct 181 EELIVAVGLTRQEAARSGDAQ 201
>gi|41408763|ref|NP_961599.1| hypothetical protein MAP2665 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41397121|gb|AAS04982.1| hypothetical protein MAP_2665 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336458747|gb|EGO37707.1| hypothetical protein MAPs_10300 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=201
Score = 255 bits (651), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 138/201 (69%), Positives = 156/201 (78%), Gaps = 0/201 (0%)
Query 1 MSELTVLQAVRLKGRVITTDLAQTLGEDLADVAATVDRLTAAGLLVDATPLRISPSGRMR 60
M+EL VLQA+RLKGRV DLA TLG D ++A TV+RL+AAGL+ L I+P+G R
Sbjct 1 MTELAVLQAIRLKGRVSRADLAATLGTDPDEIAGTVERLSAAGLVTGDATLWITPAGSAR 60
Query 61 LDDLLAEERNRADSTVLAAAYRDFRSVNADFKRLVTDWQLKGEKPNTHDDAEYDAAVLSR 120
L LLAEER D+ +AA Y DFR++NADFKRLVTDWQLK PN HDDAEYD AVL+R
Sbjct 61 LTALLAEERRGIDAAAMAAVYDDFRAINADFKRLVTDWQLKDGAPNRHDDAEYDDAVLAR 120
Query 121 LDGVHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDSYHTVWFELH 180
LD H RV P+I A QLPRL+RY KL AALDKV+AGD AWLTRPLIDSYHTVWFELH
Sbjct 121 LDDAHARVTPVIEAAAAQLPRLNRYAAKLAAALDKVRAGDTAWLTRPLIDSYHTVWFELH 180
Query 181 EELIQAVGLTRDEAAKSGDAQ 201
EELI AVGLTR EAA+SGDAQ
Sbjct 181 EELIVAVGLTRQEAARSGDAQ 201
>gi|118462876|ref|YP_881178.1| hypothetical protein MAV_1959 [Mycobacterium avium 104]
gi|118164163|gb|ABK65060.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=201
Score = 254 bits (649), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 130/201 (65%), Positives = 154/201 (77%), Gaps = 0/201 (0%)
Query 1 MSELTVLQAVRLKGRVITTDLAQTLGEDLADVAATVDRLTAAGLLVDATPLRISPSGRMR 60
M ELTVLQAVRLKGRV DLA TLG+D A VA TVD+L +GLLV L+IS GR R
Sbjct 1 MRELTVLQAVRLKGRVSQADLAATLGQDPAAVAETVDQLVESGLLVAGKTLKISAEGRTR 60
Query 61 LDDLLAEERNRADSTVLAAAYRDFRSVNADFKRLVTDWQLKGEKPNTHDDAEYDAAVLSR 120
L +LLAEER+ D+T +AA Y FR+VNA+FK LV+DWQLK +PNTHDD+ YDAAVL+R
Sbjct 61 LTELLAEERDGIDTTAIAADYEKFRAVNAEFKALVSDWQLKDGQPNTHDDSGYDAAVLAR 120
Query 121 LDGVHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDSYHTVWFELH 180
LD VH V PI+ +V+ QLPRL Y +L AL +V+ GD+AWLTRP+IDSYHTVWFELH
Sbjct 121 LDAVHETVVPILDSVSAQLPRLRAYADRLEKALARVRDGDVAWLTRPIIDSYHTVWFELH 180
Query 181 EELIQAVGLTRDEAAKSGDAQ 201
EELI A GLTRD A++G AQ
Sbjct 181 EELILATGLTRDAEAQAGHAQ 201
>gi|126436673|ref|YP_001072364.1| hypothetical protein Mjls_4100 [Mycobacterium sp. JLS]
gi|126236473|gb|ABN99873.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=201
Score = 240 bits (612), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 119/201 (60%), Positives = 148/201 (74%), Gaps = 0/201 (0%)
Query 1 MSELTVLQAVRLKGRVITTDLAQTLGEDLADVAATVDRLTAAGLLVDATPLRISPSGRMR 60
M EL++LQA RLKGRV LA TL D A V + L AGLLV+ +R++P+GR R
Sbjct 1 MDELSILQATRLKGRVSPEALAATLNRDQATVTVAIAELGEAGLLVEGKSIRLTPAGRER 60
Query 61 LDDLLAEERNRADSTVLAAAYRDFRSVNADFKRLVTDWQLKGEKPNTHDDAEYDAAVLSR 120
L+DLLAEER D++ ++ Y +FR VNA FK LV++WQLKG +PNTH+DA+YDA VL+R
Sbjct 61 LNDLLAEERLGVDASAISHTYNEFRDVNARFKSLVSEWQLKGGEPNTHEDADYDADVLAR 120
Query 121 LDGVHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDSYHTVWFELH 180
L+ VH V PIIG+ A QLPRLS Y KL A+++V AG+ W TRPLIDSYHTVWFELH
Sbjct 121 LERVHDAVLPIIGSAAEQLPRLSAYADKLSTAMERVSAGETTWFTRPLIDSYHTVWFELH 180
Query 181 EELIQAVGLTRDEAAKSGDAQ 201
EELI A GLTRD+ AK+G A+
Sbjct 181 EELILAAGLTRDQEAKAGAAE 201
>gi|333992423|ref|YP_004525037.1| hypothetical protein JDM601_3783 [Mycobacterium sp. JDM601]
gi|333488391|gb|AEF37783.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=201
Score = 236 bits (603), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 118/201 (59%), Positives = 149/201 (75%), Gaps = 0/201 (0%)
Query 1 MSELTVLQAVRLKGRVITTDLAQTLGEDLADVAATVDRLTAAGLLVDATPLRISPSGRMR 60
M EL VLQAVRLKGRV D+A T GE +A + T AG LV++ +R+S GR R
Sbjct 1 MIELKVLQAVRLKGRVQPADVATTTGEAPGTIADAITAATQAGYLVESKTIRLSIEGRSR 60
Query 61 LDDLLAEERNRADSTVLAAAYRDFRSVNADFKRLVTDWQLKGEKPNTHDDAEYDAAVLSR 120
L +LLA+ER D +AAAY DFR+VNA+FK LV+DWQLK +PN+H+D +YD A+LSR
Sbjct 61 LSELLADERAGTDGAAIAAAYDDFRNVNAEFKALVSDWQLKDGEPNSHEDKDYDGAILSR 120
Query 121 LDGVHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDSYHTVWFELH 180
L VH++V PIIG +A+++PRLS Y KL AAL KV+AGD+ WLTRP++DSYHTVWFELH
Sbjct 121 LAAVHQQVRPIIGRIAVEVPRLSGYSDKLEAALAKVQAGDLPWLTRPIMDSYHTVWFELH 180
Query 181 EELIQAVGLTRDEAAKSGDAQ 201
EELI A GLTR+ A++G A
Sbjct 181 EELILAAGLTREAEAQAGHAN 201
>gi|296165499|ref|ZP_06848030.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295899140|gb|EFG78615.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=201
Score = 232 bits (592), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 115/200 (58%), Positives = 148/200 (74%), Gaps = 0/200 (0%)
Query 1 MSELTVLQAVRLKGRVITTDLAQTLGEDLADVAATVDRLTAAGLLVDATPLRISPSGRMR 60
MS+LTVLQA+RLKGRV DL T+GED A VA+T+ +L + GL+V+ +R+SP GR R
Sbjct 1 MSDLTVLQAIRLKGRVREPDLIATVGEDPAAVASTLAQLISEGLVVEGKTVRLSPEGRER 60
Query 61 LDDLLAEERNRADSTVLAAAYRDFRSVNADFKRLVTDWQLKGEKPNTHDDAEYDAAVLSR 120
L LLAEER+ D VLA Y FR N +FK L+TDWQ++ +PN+HDD +YDAAV++R
Sbjct 61 LHALLAEERSGVDQDVLAFIYDSFRDANNEFKALITDWQIRDGQPNSHDDLDYDAAVIAR 120
Query 121 LDGVHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDSYHTVWFELH 180
LD VHR V P+I + A L RL Y KL +AL KVKAGD +WL RP++DSYHTVWFELH
Sbjct 121 LDDVHRMVRPVIDSAATYLSRLKAYADKLESALAKVKAGDTSWLARPIVDSYHTVWFELH 180
Query 181 EELIQAVGLTRDEAAKSGDA 200
+E I+A GLTR++ A++G A
Sbjct 181 QEFIEASGLTREDEARAGHA 200
>gi|226304291|ref|YP_002764249.1| hypothetical protein RER_08020 [Rhodococcus erythropolis PR4]
gi|226183406|dbj|BAH31510.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length=204
Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/190 (49%), Positives = 116/190 (62%), Gaps = 2/190 (1%)
Query 3 ELTVLQAVRLKGRVITTDLAQTLGEDLADVAATVDRLTAAGLLVDATP-LRISPSGRMRL 61
+L +LQ VRL+GR D+A + G A V V L AG + + L+++ GR L
Sbjct 4 KLQILQLVRLRGRTTAADVADSAGLPPATVDLVVRELCDAGFIQNLRGRLKLTSDGRTEL 63
Query 62 DDLLAEERNRADSTVLAAAYRDFRSVNADFKRLVTDWQLKGE-KPNTHDDAEYDAAVLSR 120
L+A E D +A AY +F SVN FK+LVTDWQL + KPN H DAEYDAAV+SR
Sbjct 64 THLIAAEHEEVDQVQIADAYHEFSSVNTTFKQLVTDWQLMADNKPNDHSDAEYDAAVISR 123
Query 121 LDGVHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDSYHTVWFELH 180
L +H P++ +A PRL YP + AAL K++ GD WL RPLIDSYHT WFELH
Sbjct 124 LGDIHTDFRPLLERLAALAPRLQMYPGRFDAALVKIQDGDHTWLARPLIDSYHTAWFELH 183
Query 181 EELIQAVGLT 190
E+LI GLT
Sbjct 184 EDLIGLTGLT 193
>gi|226361867|ref|YP_002779645.1| hypothetical protein ROP_24530 [Rhodococcus opacus B4]
gi|226240352|dbj|BAH50700.1| hypothetical protein [Rhodococcus opacus B4]
Length=214
Score = 154 bits (388), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 89/205 (44%), Positives = 115/205 (57%), Gaps = 12/205 (5%)
Query 3 ELTVLQAVRLKGRVITTDLAQTLG------EDLADVAATVDRLTAAGLLVDATPLRISPS 56
EL++LQ +RLKGR LA G E L D A +R T G V ++S S
Sbjct 14 ELSLLQTLRLKGRATQDALASAAGIDDATVERLVDRAVEAERCTRTGQFV-----KLSAS 68
Query 57 GRMRLDDLLAEERNRADSTVLAAAYRDFRSVNADFKRLVTDWQLK-GEKPNTHDDAEYDA 115
G+ RL +L A ER D L + Y F S N D K LVTDWQ+K G PN H DA YD
Sbjct 69 GKERLAELTAAERASVDHAGLESLYEQFDSYNNDLKALVTDWQMKDGATPNDHADAAYDE 128
Query 116 AVLSRLDGVHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDSYHTV 175
++ RL +H P +G +A+ RL+ Y + A+DKV +GD +++ RP+ DSYHTV
Sbjct 129 EIVRRLSELHESFLPWLGKLAVLNKRLAHYTARFDTAVDKVNSGDHSFIARPIADSYHTV 188
Query 176 WFELHEELIQAVGLTRDEAAKSGDA 200
WFELHEELI +G R A +G A
Sbjct 189 WFELHEELIGLLGRDRASEAAAGRA 213
>gi|333992395|ref|YP_004525009.1| hypothetical protein JDM601_3755 [Mycobacterium sp. JDM601]
gi|333488363|gb|AEF37755.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=204
Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/201 (44%), Positives = 125/201 (63%), Gaps = 4/201 (1%)
Query 1 MSELTVLQAVRLKGRVITTDLAQTLGEDLADVAATVDRLTAAGLLVDATPL--RISPSGR 58
+ ELT+L+ V +KGRV +A +LG D A V A ++ T GL + TP+ RI+P GR
Sbjct 2 IDELTILRLVAIKGRVTADAIADSLGADAAQVQAQLEDHTERGLFKN-TPMGYRITPVGR 60
Query 59 MRLDDLLAEERNRADSTVLAAAYRDFRSVNADFKRLVTDWQLKG-EKPNTHDDAEYDAAV 117
R +L+ E AD+ +A Y F N + K ++TDWQ +G ++PN H DA YDA V
Sbjct 61 ERCTELVVAECQAADAAAVAEIYEVFTEHNTELKAIITDWQTRGPDQPNDHTDAAYDAEV 120
Query 118 LSRLDGVHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDSYHTVWF 177
L RL G+HR+V P++ + RL+ Y +L A D V AG+ ++++P++DSYHTVWF
Sbjct 121 LRRLLGLHRQVMPLVDRICSAATRLTHYRARLAKAADAVAAGNNNYVSKPILDSYHTVWF 180
Query 178 ELHEELIQAVGLTRDEAAKSG 198
ELHE+LI G TR A++G
Sbjct 181 ELHEDLIGLAGRTRAGEAEAG 201
>gi|118463559|ref|YP_884176.1| hypothetical protein MAV_5058 [Mycobacterium avium 104]
gi|118164846|gb|ABK65743.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=165
Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/165 (42%), Positives = 99/165 (60%), Gaps = 2/165 (1%)
Query 39 LTAAGLLVDATP-LRISPSGRMRLDDLLAEERNRADSTVLAAAYRDFRSVNADFKRLVTD 97
+ AAG + +A ++S +GR L+ L ER D ++ + Y++F N+ KRL+T
Sbjct 1 MMAAGYVEEARGRFKLSATGREHLEAELRRERQTVDVELITSLYKEFDEHNSALKRLMTR 60
Query 98 WQLKGEK-PNTHDDAEYDAAVLSRLDGVHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKV 156
WQLK + PN H D +YD AV+ L + P++ + PRL+ YP +L AL +V
Sbjct 61 WQLKADNSPNDHGDPDYDQAVIDDLARLDASFQPLLARMVDAAPRLAHYPSRLSNALTRV 120
Query 157 KAGDIAWLTRPLIDSYHTVWFELHEELIQAVGLTRDEAAKSGDAQ 201
AGD +W +PL DSYHTVWFELHE+LI GL+R E A +G A+
Sbjct 121 AAGDHSWFAKPLADSYHTVWFELHEDLIGLAGLSRVEEAAAGRAE 165
>gi|115360968|ref|YP_778105.1| hypothetical protein Bamb_6227 [Burkholderia ambifaria AMMD]
gi|115286296|gb|ABI91771.1| hypothetical protein Bamb_6227 [Burkholderia ambifaria AMMD]
Length=726
Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/195 (37%), Positives = 106/195 (55%), Gaps = 6/195 (3%)
Query 5 TVLQAVRLKGRVITTDLAQTLGEDLADVAATVDRLTAAGLLVDATP-LRISPSGRMRLDD 63
+VL+ + LK + D+ G A ++ T G ++ +SP R+ LD
Sbjct 532 SVLRCLALKPNALPADIEALSGLGAEQTLAVLNTATVGGRAIEIDGRFVLSPLARIALDA 591
Query 64 LLAEERNRADS-TVLAAAYRDFRSVNADFKRLVTDWQ---LKGEK-PNTHDDAEYDAAVL 118
A E A + A Y F +N+ K L+TDWQ L G++ N H D E+D A++
Sbjct 592 HYANEYADACADETFVAHYEAFERINSRLKALITDWQTVELGGQRIANDHQDHEHDFALI 651
Query 119 SRLDGVHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDSYHTVWFE 178
RL G+H RV I+ +A +PR+ Y +L+ AL+K+ AG I W++ IDSYHTVWF+
Sbjct 652 DRLCGLHDRVDDILVRLAQAVPRIDNYRSRLQEALEKIDAGAIQWVSDANIDSYHTVWFQ 711
Query 179 LHEELIQAVGLTRDE 193
LHE+L++ VG R E
Sbjct 712 LHEDLLRIVGRQRTE 726
>gi|336176157|ref|YP_004581532.1| hypothetical protein FsymDg_0019 [Frankia symbiont of Datisca
glomerata]
gi|334857137|gb|AEH07611.1| hypothetical protein FsymDg_0019 [Frankia symbiont of Datisca
glomerata]
Length=200
Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 82/199 (42%), Positives = 114/199 (58%), Gaps = 3/199 (1%)
Query 3 ELTVLQAVRLKGRVITTDLAQTL-GEDLADVAATVDRLTAAGLLVDATP-LRISPSGRMR 60
+L VLQAVRLKG + L G D A V +++ L AG + + R+ P GR
Sbjct 2 DLAVLQAVRLKGGLADASTVIWLAGGDEAAVRRSLESLVVAGHVQERRGRYRLMPGGRDM 61
Query 61 LDDLLAEERNRADSTVLAAAYRDFRSVNADFKRLVTDWQLKGEKPNTHDDAEYDAAVLSR 120
L LA ER D T L + +F + + K ++ DWQL+ E+PN H DA YDAA+++R
Sbjct 62 LRVALAAERAGLDVTALDLVWEEFSAHDHRLKVILRDWQLRDEEPNDHSDAAYDAAIIAR 121
Query 121 LDGVHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDSYHTVWFELH 180
++ +H V + A +PRL RYP +L AL ++ GD +LT P++DSYHTV+ ELH
Sbjct 122 VEALHGDVSRLATRAAAIVPRLRRYPGRLEMALVRLHGGDRRFLTHPMVDSYHTVFHELH 181
Query 181 EELIQAVGLTR-DEAAKSG 198
EEL A G R E A +G
Sbjct 182 EELYGATGRDRASEEATTG 200
>gi|2052113|emb|CAB08133.1| unknown [Mycobacterium leprae]
Length=141
Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/101 (59%), Positives = 72/101 (72%), Gaps = 0/101 (0%)
Query 1 MSELTVLQAVRLKGRVITTDLAQTLGEDLADVAATVDRLTAAGLLVDATPLRISPSGRMR 60
M+ELTVLQAVRLKGRV +TDLA TL +DL +V TV++LTAAGLLV LRISP+ +
Sbjct 1 MTELTVLQAVRLKGRVSSTDLAATLYDDLVEVTKTVEQLTAAGLLVGEMTLRISPTDHAK 60
Query 61 LDDLLAEERNRADSTVLAAAYRDFRSVNADFKRLVTDWQLK 101
L+ LL E D+T LA Y +F SV DFK L+T+ QLK
Sbjct 61 LNALLDAECKGIDATELATYYHEFHSVELDFKELITNCQLK 101
>gi|302541541|ref|ZP_07293883.1| conserved hypothetical protein [Streptomyces hygroscopicus ATCC
53653]
gi|302459159|gb|EFL22252.1| conserved hypothetical protein [Streptomyces himastatinicus ATCC
53653]
Length=218
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/209 (35%), Positives = 100/209 (48%), Gaps = 19/209 (9%)
Query 4 LTVLQAVRLKGRVITTDLAQTLGEDLADVAATVDRLTAAGLLVDATPL------RISPSG 57
VL + +KG L G D DV A +++L A G AT + RI+ G
Sbjct 18 FDVLHTLVIKGMAPADPLVAGSGHDREDVLAELEKLRADG---HATHMERRGLWRITAEG 74
Query 58 RMR-----LDDLLAEERNRADSTVLAAAYRDFRSVNADFKRLVTDWQLKGEKPNTHDDAE 112
R R DDL + R+R L Y F VN FK L T WQL+ N H DA
Sbjct 75 RERHTALIADDLAGDGRDR-----LRPGYERFLPVNDRFKELCTRWQLRDGATNDHTDAA 129
Query 113 YDAAVLSRLDGVHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDSY 172
YD A ++ L VH + G + PR RY L ALD+++ GD T + DSY
Sbjct 130 YDQARVAELGAVHDEAVEVTGELTAVRPRFGRYADGLTGALDRLRDGDHKAFTGVMCDSY 189
Query 173 HTVWFELHEELIQAVGLTRDEAAKSGDAQ 201
H VW ELH +L+ ++G+ R+ ++G A+
Sbjct 190 HDVWMELHRDLLLSLGIEREAEERAGAAR 218
>gi|269126797|ref|YP_003300167.1| hypothetical protein Tcur_2569 [Thermomonospora curvata DSM 43183]
gi|268311755|gb|ACY98129.1| conserved hypothetical protein [Thermomonospora curvata DSM 43183]
Length=211
Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/194 (36%), Positives = 106/194 (55%), Gaps = 7/194 (3%)
Query 6 VLQAVRLKGRVITTDLAQTLGEDLADVAATVDRLTAAGLLV----DATPLRISPSGRMRL 61
VL A+R+KG +A G DVAA + L L+V ++ +GR
Sbjct 13 VLHALRVKGLASEELVAAICGLPAGDVAAQLAALAEERLIVRREGHLAGSTLTAAGRDAH 72
Query 62 DDLL-AEERNRADSTVLAAAYRDFRSVNADFKRLVTDWQLKGE--KPNTHDDAEYDAAVL 118
+LL + + A + LAAAY F VN +FKR+ TDWQ++ + +PN H D YD V+
Sbjct 73 AELLEGDVADPARRSALAAAYEAFLPVNGEFKRVCTDWQVRSDTGRPNDHTDRAYDDGVV 132
Query 119 SRLDGVHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDSYHTVWFE 178
+RL +H R+ ++ +A + R Y +L AL++V+ GD+ RPL DSYH +W E
Sbjct 133 ARLGRIHDRITVVLKDLAAVVGRFGAYLGRLENALERVRGGDVTAFARPLADSYHDIWME 192
Query 179 LHEELIQAVGLTRD 192
LH++L+ ++ RD
Sbjct 193 LHQDLLLSLRKERD 206
>gi|331695403|ref|YP_004331642.1| hypothetical protein Psed_1551 [Pseudonocardia dioxanivorans
CB1190]
gi|326950092|gb|AEA23789.1| hypothetical protein Psed_1551 [Pseudonocardia dioxanivorans
CB1190]
Length=200
Score = 104 bits (260), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 73/195 (38%), Positives = 102/195 (53%), Gaps = 8/195 (4%)
Query 6 VLQAVRLKGRVITTDLAQTLGEDLADVAATVDRLTAAGLLVDA-TPLRISPSGRMRLDDL 64
VL + +K +A LG D +V A +D A G + A +P+GR RLD
Sbjct 7 VLHGLVVKKAGTAEQIAAVLGLDEPEVRAALDDALATGDVAGARGTFMPTPAGRARLDAA 66
Query 65 L--AEERNRADSTVLAAAYRDFRSVNADFKRLVTDWQLKGEK----PNTHDDAEYDAAVL 118
A + R D+TV +AA R F +N L+T WQ + PN H D YD AVL
Sbjct 67 YPQAYAQVREDTTVTSAADR-FEVINRKLLALLTRWQSVPQAGSTVPNDHSDPAYDNAVL 125
Query 119 SRLDGVHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDSYHTVWFE 178
L +H R PI+ +A +PRL Y +L AA D+ G+ +++ +DSYHTVW E
Sbjct 126 DELGDLHERTEPILAVLAGAVPRLKVYADRLAAAYDRALGGEHDYVSGVRVDSYHTVWHE 185
Query 179 LHEELIQAVGLTRDE 193
LHE+L++ +G TR E
Sbjct 186 LHEDLLRILGRTRQE 200
>gi|256826141|ref|YP_003150101.1| hypothetical protein Ksed_23650 [Kytococcus sedentarius DSM 20547]
gi|256689534|gb|ACV07336.1| hypothetical protein Ksed_23650 [Kytococcus sedentarius DSM 20547]
Length=211
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 99/200 (50%), Gaps = 11/200 (5%)
Query 3 ELTVLQAVRLKGRVITTDLAQTLGEDLADVAATVDRLTAAGL-----LVDATPLRISPSG 57
EL VL AVRL G + +A+ G + + G D ++ SG
Sbjct 8 ELLVLHAVRLMGFADSDAVAERAGTSHVEALRVLSEAEREGWVQHAAFADLEGWSLTDSG 67
Query 58 RMRLDDLLAEERNRAD-STVLAAAYRDFRSVNADFKRLVTDWQLK-----GEKPNTHDDA 111
+ + LA ER AD + V+AA YR+F +NA R VTDWQ+K PN H D
Sbjct 68 KTENERQLATERADADPAGVVAAVYREFLPLNARLLRAVTDWQIKPIGADQLAPNDHADR 127
Query 112 EYDAAVLSRLDGVHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDS 171
+D VL L + R++ P+ +A L R Y + AL K + G++ W+ R +DS
Sbjct 128 AWDGRVLDELTALGRKLAPLGERLAAVLARFCGYAERYETALHKARNGELDWIDRTEVDS 187
Query 172 YHTVWFELHEELIQAVGLTR 191
H VWF+LHE+L+ +G+ R
Sbjct 188 CHRVWFQLHEDLVATLGIDR 207
>gi|331695934|ref|YP_004332173.1| hypothetical protein Psed_2095 [Pseudonocardia dioxanivorans
CB1190]
gi|326950623|gb|AEA24320.1| hypothetical protein Psed_2095 [Pseudonocardia dioxanivorans
CB1190]
Length=206
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/194 (33%), Positives = 95/194 (49%), Gaps = 6/194 (3%)
Query 6 VLQAVRLKGRVITTDLAQTLGEDLADVAATVDRLTAAGLLVDA--TPLRISPSGRMRLDD 63
VL V LK +A+ G +V A +DRL A GLLV A L +
Sbjct 13 VLNTVALKKMATPQVVAEACGLPRTEVEAALDRLAAQGLLVVAGGAALPTDEAEPALAAA 72
Query 64 LLAEERNRADSTVLAAAYRDFRSVNADFKRLVTDWQ---LKGEK-PNTHDDAEYDAAVLS 119
+ F +VN+ F ++ WQ + G K N H DAEYD V++
Sbjct 73 AARRYGAVRADAEVGGLVERFETVNSQFLTTMSSWQQVDVGGRKVANDHSDAEYDDKVIA 132
Query 120 RLDGVHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDSYHTVWFEL 179
RLD + R+GP++ +A R YP + R+AL+++ G+ +++ P +DS H VWFE
Sbjct 133 RLDKLIARLGPLLEALAGHDARFGTYPARFRSALERIDRGEHEYVSSPTLDSVHNVWFEF 192
Query 180 HEELIQAVGLTRDE 193
HE+L++ +G R E
Sbjct 193 HEDLLRTLGRERTE 206
>gi|336116174|ref|YP_004570940.1| hypothetical protein MLP_05230 [Microlunatus phosphovorus NM-1]
gi|334683952|dbj|BAK33537.1| hypothetical protein MLP_05230 [Microlunatus phosphovorus NM-1]
Length=210
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 67/201 (34%), Positives = 103/201 (52%), Gaps = 11/201 (5%)
Query 2 SELTVLQAVRLKGRVITTDLAQTLGEDLADVAATVDRLTAAGLLV-----DATPLRISPS 56
+L VL AVRLKG ++ G D A+V+ + A G + ++ +
Sbjct 7 CDLLVLHAVRLKGMADDDEVVARFGLDRAEVSELLLDFQAYGWITRVDFAGTGGWTLTEA 66
Query 57 GRMRLDDLLAEERNRADS-TVLAAAYRDFRSVNADFKRLVTDWQLK--GEKP---NTHDD 110
G+ R + LA+E A + T + + +RDF +NA TDWQL+ P N HDD
Sbjct 67 GKRRNEQQLAQELTTAGAQTQVESVHRDFLPLNARLLLAGTDWQLRPTATDPLAANKHDD 126
Query 111 AEYDAAVLSRLDGVHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLID 170
+DA VL D + R +G + + L R + Y + AL++V GD++W+T+ D
Sbjct 127 PNWDARVLGVFDVLARALGELEPRLTACLGRFAGYHDRFSRALERVHGGDLSWVTKVRED 186
Query 171 SYHTVWFELHEELIQAVGLTR 191
S HTVW ELHE+L+ +G+ R
Sbjct 187 SCHTVWMELHEDLVATLGIER 207
>gi|271966470|ref|YP_003340666.1| hypothetical protein Sros_5145 [Streptosporangium roseum DSM
43021]
gi|270509645|gb|ACZ87923.1| hypothetical protein Sros_5145 [Streptosporangium roseum DSM
43021]
Length=211
Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 69/199 (35%), Positives = 95/199 (48%), Gaps = 11/199 (5%)
Query 4 LTVLQAVRLKGRVITTDLAQTLGEDLADVAATVDRLTAAGL-----LVDATPLRISPSGR 58
L VL AVR+ G T +A G D A + A G ++ SGR
Sbjct 9 LLVLHAVRIAGFADTPVIAHRYGLDAAATEEELRDAEARGWVGHTAFAGTEGWSLTESGR 68
Query 59 MRLDDLLAEERNR-ADSTVLAAAYRDFRSVNADFKRLVTDWQLK---GEK--PNTHDDAE 112
+ LA E R + + YR+F +NA R TDWQL+ G++ N H D
Sbjct 69 AENERRLAAELARVGGAGEVRDIYREFLPLNALLLRACTDWQLRPTAGDRLAVNDHSDPA 128
Query 113 YDAAVLSRLDGVHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDSY 172
+DA VL L G+ R + P+ + L R Y + AL + +AG+ AW+ R +DS
Sbjct 129 WDAGVLRELGGIDRALTPLADRLGSVLTRFRGYGTRFTTALTRARAGEGAWVDRTDVDSC 188
Query 173 HTVWFELHEELIQAVGLTR 191
H VWFELHE+LI +GL R
Sbjct 189 HRVWFELHEDLIATLGLDR 207
>gi|226305305|ref|YP_002765263.1| hypothetical protein RER_18160 [Rhodococcus erythropolis PR4]
gi|226184420|dbj|BAH32524.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length=179
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/189 (37%), Positives = 94/189 (50%), Gaps = 19/189 (10%)
Query 1 MSELTVLQAVRLKGRVITTDLAQTLGEDLADVAATVDRLTAAGLLVDAT-PLRISPSGRM 59
+ EL +LQAVRLK RV LA+ LG A A D L A G +A + ++ G
Sbjct 7 VDELALLQAVRLKERVGAVVLAEHLGVSAASGQAAYDALVAQGKAAEAEGAISLTEKGLA 66
Query 60 RLDDLLAEERNRADSTVLAAAYRDFRSVNADFKRLVTDWQLKGEKPNTHDDAEYDAAVLS 119
L+D L ER D + Y F ++ +F L+ DDA DA L+
Sbjct 67 ELEDQLDAERVSIDEDSIGEVYEAFVPLDEEFVALI-------------DDA--DANSLA 111
Query 120 RLDGVHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDSYHTVWFEL 179
LD RR + ++ +PRLSRY AL KV+AG+ W++ P+IDSY TVW E+
Sbjct 112 ELD---RRAANLFDDLSAFVPRLSRYQDLFSDALAKVQAGESKWISEPIIDSYATVWGEI 168
Query 180 HEELIQAVG 188
+EL A G
Sbjct 169 RQELFGAAG 177
>gi|229818580|ref|YP_002880106.1| transcriptional regulator [Beutenbergia cavernae DSM 12333]
gi|229564493|gb|ACQ78344.1| putative transcriptional regulator [Beutenbergia cavernae DSM
12333]
Length=214
Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/118 (41%), Positives = 68/118 (58%), Gaps = 5/118 (4%)
Query 79 AAYRDFRSVNADFKRLVTDWQLK---GEK--PNTHDDAEYDAAVLSRLDGVHRRVGPIIG 133
A YRDF +NA +R TDWQL+ G + N H D E+DA V+ L + VGP+
Sbjct 90 AVYRDFLPLNARLQRACTDWQLRPAPGGRLAANDHTDQEWDAGVVRELAALDTEVGPLAA 149
Query 134 TVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDSYHTVWFELHEELIQAVGLTR 191
+ L R Y + +AL +V+AGD +W+ +DS H VWFELHE+L+ +G+ R
Sbjct 150 RLEAVLTRFRGYDARFGSALRRVRAGDDSWVDGTDVDSCHRVWFELHEDLVATLGIDR 207
>gi|284030881|ref|YP_003380812.1| hypothetical protein Kfla_2948 [Kribbella flavida DSM 17836]
gi|283810174|gb|ADB32013.1| hypothetical protein Kfla_2948 [Kribbella flavida DSM 17836]
Length=215
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/201 (33%), Positives = 94/201 (47%), Gaps = 11/201 (5%)
Query 2 SELTVLQAVRLKGRVITTDLAQTLGEDLADVAATVDRLTAAGLLV-----DATPLRISPS 56
++L L AVRLKG +A D A + A G + ++ S
Sbjct 7 ADLLALHAVRLKGMADDLAVADRFALDPAATNELLLDFQAFGWITWSEFAGTGGWSLTES 66
Query 57 GRMRLDDLLAEERNRADST-VLAAAYRDFRSVNADFKRLVTDWQLKGEK-----PNTHDD 110
GR + + L+ E +R T V+ YRDF +N ++ T WQL+ N H D
Sbjct 67 GRAKNEQQLSSELSRTPGTAVVDEVYRDFLPLNDRLQQACTQWQLRPSPGDPLAANDHTD 126
Query 111 AEYDAAVLSRLDGVHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLID 170
+D V+ L + +++G + + L R Y + AALD+ AGD W+ ID
Sbjct 127 PAWDRRVIEELASLAQQLGLLSDRLCTALERFGGYDRRFAAALDRASAGDGRWVDGTGID 186
Query 171 SYHTVWFELHEELIQAVGLTR 191
S HTVWFELHE+LI + LTR
Sbjct 187 SCHTVWFELHEDLIATLNLTR 207
>gi|297153485|gb|ADI03197.1| hypothetical protein SBI_00076 [Streptomyces bingchenggensis
BCW-1]
Length=208
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 63/199 (32%), Positives = 97/199 (49%), Gaps = 10/199 (5%)
Query 2 SELTVLQAVRLKGRVITTDLAQTLGEDLADVAATVDRLTAAGLLV----DATPLRISPSG 57
+ L VL A+R G L G D +DV + + L A GL+ D ++ +G
Sbjct 11 ANLLVLHALRCAGAAGPARLHAFTGLDESDVESELIDLGAEGLVTRMSGDMPCWLLTDTG 70
Query 58 RMRLDDLLAEERNRADS-TVLAAAYRDFRSVNADFKRLVTDWQLKG----EKPNTHDDAE 112
R + + +E A++ + AA+ F +N + L WQL+ N H D
Sbjct 71 RAADAERITDELTSANARGAVEAAFDRFLVLNPELLDLCAAWQLRTVDGIMNANDHSDPV 130
Query 113 YDAAVLSRLDGVHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDSY 172
YD+ VL R + RR P+ ++ LPR RY +L ALD+ +G + ++T SY
Sbjct 131 YDSRVLDRFADLDRRAAPVCAELSAALPRFGRYRDRLAGALDRAASGALEYVTDSTA-SY 189
Query 173 HTVWFELHEELIQAVGLTR 191
HTVW ELHE+L+ +G+ R
Sbjct 190 HTVWAELHEDLLATLGMRR 208
>gi|229490750|ref|ZP_04384588.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|229322570|gb|EEN88353.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=179
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/187 (36%), Positives = 90/187 (49%), Gaps = 19/187 (10%)
Query 3 ELTVLQAVRLKGRVITTDLAQTLGEDLADVAATVDRLTAAGLLVDA-TPLRISPSGRMRL 61
EL +LQAVRLK RV LA+ LG A A D L A G V+A + ++ G L
Sbjct 9 ELALLQAVRLKERVGAVVLAEHLGVSAASGQAAYDALVAQGKAVEAENAISLTEKGLAEL 68
Query 62 DDLLAEERNRADSTVLAAAYRDFRSVNADFKRLVTDWQLKGEKPNTHDDAEYDAAVLSRL 121
+D L ER D + Y F ++ +F L+ D L+ L
Sbjct 69 EDQLDAERVSIDEDSIGEVYEAFLPLDEEFAALIDDADADS---------------LAEL 113
Query 122 DGVHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDSYHTVWFELHE 181
D RR + ++ +PRLSRY AL KV+AG+ W++ P+IDSY TVW E+ +
Sbjct 114 D---RRAANLFDDLSAFVPRLSRYQDLFSDALAKVQAGESKWISEPIIDSYATVWGEIRQ 170
Query 182 ELIQAVG 188
EL A G
Sbjct 171 ELFGAAG 177
>gi|258652566|ref|YP_003201722.1| hypothetical protein Namu_2358 [Nakamurella multipartita DSM
44233]
gi|258555791|gb|ACV78733.1| conserved hypothetical protein [Nakamurella multipartita DSM
44233]
Length=205
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 72/125 (58%), Gaps = 5/125 (4%)
Query 73 DSTVLAAAYRDFRSVNADFKRLVTDWQ---LKGEK-PNTHDDAEYDAAVLSRLDGVHRRV 128
D VLA R F +VNA F ++ WQ + G K N H DAEYD ++SR+D + R+
Sbjct 82 DPAVLALVDR-FETVNAQFLTTISLWQQIDVGGRKVANDHTDAEYDDKIISRIDKLVARL 140
Query 129 GPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDSYHTVWFELHEELIQAVG 188
P+I +A PR + Y + AA+ V G +++ P +DS HTVWFE HE+L++ +G
Sbjct 141 TPLIDALAGHDPRFAGYATRFAAAMAAVDGGQAEFVSSPTLDSVHTVWFEFHEDLLRTLG 200
Query 189 LTRDE 193
R E
Sbjct 201 RERVE 205
>gi|226365553|ref|YP_002783336.1| hypothetical protein ROP_61440 [Rhodococcus opacus B4]
gi|226244043|dbj|BAH54391.1| hypothetical protein [Rhodococcus opacus B4]
Length=181
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 68/193 (36%), Positives = 91/193 (48%), Gaps = 20/193 (10%)
Query 1 MSELTVLQAVRLKGRVITTDLAQTLGEDLADVAATVDRLTAAGLLVDATPLRI--SPSGR 58
+ EL +LQAVRLK +V LA+ LG A A D L G +A+ RI + +G
Sbjct 7 VDELALLQAVRLKEQVSAAVLAEHLGVSAASAQAAYDALLTQGKAQEASDGRIALTDAGL 66
Query 59 MRLDDLLAEERNRADSTVLAAAYRDFRSVNADFKRLVTDWQLKGEKPNTHDDAEYDAAVL 118
L+D L ER D +A Y F + +F L+ D A
Sbjct 67 SELEDQLDAERVSIDEDSIAEVYESFVPFHEEFVGLI------------------DTADA 108
Query 119 SRLDGVHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDSYHTVWFE 178
+L + RR + ++ +PRLSRY AL KV AG+ W++ P+IDSY TVW E
Sbjct 109 DQLADLDRRASVVFDDLSAFVPRLSRYQDLFADALAKVAAGETKWISEPVIDSYATVWSE 168
Query 179 LHEELIQAVGLTR 191
L ELI A G T
Sbjct 169 LRRELIGASGATE 181
>gi|328880595|emb|CCA53834.1| hypothetical protein SVEN_0547 [Streptomyces venezuelae ATCC
10712]
Length=236
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/202 (33%), Positives = 93/202 (47%), Gaps = 11/202 (5%)
Query 3 ELTVLQAVRLKGRVITTDLAQTLGEDLADVAATVDRLTAAGL-----LVDATPLRISPSG 57
EL L AVRL+G A G D DV T+ A G ++ +G
Sbjct 31 ELLALHAVRLRGLADDEAAAARYGLDPEDVRETLLDHQARGWVTRREFAGTRGWALTDAG 90
Query 58 RMRLDDLLAEERNRAD-STVLAAAYRDFRSVNADFKRLVTDWQLKGEKP-----NTHDDA 111
R + LLA E A + Y F + NA R TDWQL+ + N H DA
Sbjct 91 RAEGERLLAGELAGAGLGPFVRERYETFLADNARCLRACTDWQLRPDGAGRLAVNEHGDA 150
Query 112 EYDAAVLSRLDGVHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDS 171
+D VL L + R + + +A ++ R Y + AL +V+ G+++W+ R DS
Sbjct 151 AWDGRVLDELADLARVIATVSEQLASRIGRFGGYGARFGDALARVRRGELSWVDRVRADS 210
Query 172 YHTVWFELHEELIQAVGLTRDE 193
HTVW ELHE+L+ +G+ R E
Sbjct 211 CHTVWMELHEDLLATLGIARGE 232
>gi|111023049|ref|YP_706021.1| hypothetical protein RHA1_ro06086 [Rhodococcus jostii RHA1]
gi|110822579|gb|ABG97863.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=181
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/190 (35%), Positives = 92/190 (49%), Gaps = 20/190 (10%)
Query 1 MSELTVLQAVRLKGRVITTDLAQTLGEDLADVAATVDRLTAAGLLVDATPLRI--SPSGR 58
+ EL +LQAVRLK +V + LA+ LG A A D L G +A+ RI + +G
Sbjct 7 VDELALLQAVRLKEQVSASVLAEHLGVSAASAQAAYDALLTQGKAQEASDGRIELTDAGL 66
Query 59 MRLDDLLAEERNRADSTVLAAAYRDFRSVNADFKRLVTDWQLKGEKPNTHDDAEYDAAVL 118
L+D L ER D +A Y F + +F L+ D+A
Sbjct 67 SELEDQLDAERVSIDEDSIAEVYESFVPFHEEFVGLI------------------DSADA 108
Query 119 SRLDGVHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDSYHTVWFE 178
+L + RR + ++ +PRLSRY AL KV AG+ W++ P+IDSY TVW E
Sbjct 109 DQLADLDRRASVVFDDLSAFVPRLSRYQDLFADALAKVAAGETKWISEPVIDSYATVWTE 168
Query 179 LHEELIQAVG 188
L EL+ A G
Sbjct 169 LRTELLGASG 178
>gi|312140945|ref|YP_004008281.1| hypothetical protein REQ_36130 [Rhodococcus equi 103S]
gi|311890284|emb|CBH49602.1| hypothetical protein REQ_36130 [Rhodococcus equi 103S]
Length=186
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/197 (35%), Positives = 90/197 (46%), Gaps = 19/197 (9%)
Query 1 MSELTVLQAVRLKGRVITTDLAQTLGEDLADVAATVDRLTAAGLLVDAT--PLRISPSGR 58
+ EL +LQ +RLKG+V LA LG LA A D L A G + ++ +G
Sbjct 7 VDELALLQTIRLKGQVTADVLAAQLGVALASAEAARDALLAQGKAEETGDGAFALTDAGV 66
Query 59 MRLDDLLAEERNRADSTVLAAAYRDFRSVNADFKRLVTDWQLKGEKPNTHDDAEYDAAVL 118
L D L ER D +A + F ++ + LV PN L
Sbjct 67 AELGDQLDAERVSIDEDSIAEIHERFLELDGPLRELVEG------GPNVE--------AL 112
Query 119 SRLDGVHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDSYHTVWFE 178
+ LD R+ ++ V+ +PRLSRY AL K +AGD AW+ P I SY TVW E
Sbjct 113 AALD---RKAQDVLDDVSAFVPRLSRYQDLFAEALRKAQAGDAAWIAAPEIASYATVWGE 169
Query 179 LHEELIQAVGLTRDEAA 195
+ EL A GL D AA
Sbjct 170 IARELRGACGLDEDAAA 186
>gi|296128325|ref|YP_003635575.1| putative transcriptional regulator [Cellulomonas flavigena DSM
20109]
gi|296020140|gb|ADG73376.1| putative transcriptional regulator [Cellulomonas flavigena DSM
20109]
Length=207
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/206 (36%), Positives = 101/206 (50%), Gaps = 21/206 (10%)
Query 2 SELTVLQAVRLKG--------RVITTDLAQTLGEDLADVAAT--VDRLTAAGLLVDATPL 51
+EL VL AVR+ G R D A T GE L D A+ VDR D
Sbjct 3 TELLVLHAVRILGFADDAAVARRFALDPATT-GELLLDAQASGLVDR----AQFADLAGW 57
Query 52 RISPSGRMRLDDLLAEERNRADS-TVLAAAYRDFRSVNADFKRLVTDWQLK-----GEKP 105
++ GR R + LLA+E +RA + + +R F +NA ++ TDWQL+
Sbjct 58 SLTARGRARGEALLADELDRAGARATVRDVHRAFLPLNARLRQACTDWQLRPVPTDALAA 117
Query 106 NTHDDAEYDAAVLSRLDGVHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLT 165
N H DA +D VL L V + P+ +A LPR + Y + AA + AGD W+
Sbjct 118 NDHTDAAWDVRVLDDLAAVELGLAPLAARLADVLPRFAGYDDRFAAARRRAAAGDGRWVD 177
Query 166 RPLIDSYHTVWFELHEELIQAVGLTR 191
+DS H VWFELHE+L+ +GL R
Sbjct 178 ATDVDSCHRVWFELHEDLVATLGLDR 203
>gi|332668937|ref|YP_004451945.1| hypothetical protein Celf_0415 [Cellulomonas fimi ATCC 484]
gi|332337975|gb|AEE44558.1| hypothetical protein Celf_0415 [Cellulomonas fimi ATCC 484]
Length=210
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/205 (33%), Positives = 94/205 (46%), Gaps = 13/205 (6%)
Query 3 ELTVLQAVRLKGRVITTDLAQTLGEDLADVAATVDRLTAAGLLVDAT-----PLRISPSG 57
+L VL AVR+ G T +A+ D A + A G + + ++ G
Sbjct 8 DLLVLHAVRITGFADTAAVARRFDLDETATAEALLDAEAHGWVTHTSFAGLGGWSLTARG 67
Query 58 RMRLDDLLAEERNRADSTVLAAAYRD-FRSVNADFKRLVTDWQLKGEKP-----NTHDDA 111
R + LLA E A A D F +NA ++ TDWQL+ N H D
Sbjct 68 RAAGERLLATELAEAGGLDEVHAVHDAFLPLNARLQQACTDWQLRPTADDRLAVNDHTDV 127
Query 112 EYDAAVLSRLDGVHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDS 171
+DA V L V + P+ +A L R Y + AAL + +AG+ W+ R +DS
Sbjct 128 AWDARVHDELAAVADGLAPLADRLARVLARFDGYHHRFTAALSRARAGEHGWVDRSDVDS 187
Query 172 YHTVWFELHEELIQAVGLTRDEAAK 196
H VWFELHE+L+ +G RD AA+
Sbjct 188 CHRVWFELHEDLLATLG--RDRAAQ 210
>gi|226362387|ref|YP_002780165.1| hypothetical protein ROP_29730 [Rhodococcus opacus B4]
gi|226240872|dbj|BAH51220.1| hypothetical protein [Rhodococcus opacus B4]
Length=202
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/181 (33%), Positives = 96/181 (54%), Gaps = 9/181 (4%)
Query 21 LAQTLGEDLADVAATVDRLTAAGLLVDA-TPLRISPSGRMRLDDLL--AEERNRADSTVL 77
LA+ +ADV A +++ A G ++ A I+P+GR LD + A R+D V
Sbjct 23 LAEINALPVADVEAALEKAVADGAVMAARGNFMITPAGREFLDGVYPRAFAGIRSDDAV- 81
Query 78 AAAYRDFRS-VNADFKRLVTDWQ---LKGEK-PNTHDDAEYDAAVLSRLDGVHRRVGPII 132
AA DF + VN L TDWQ + G + N H DA+YDA ++ +L V + I+
Sbjct 82 TAAMDDFETGVNKQVLALTTDWQTVEVDGARVSNDHADADYDAKIIEKLGRVQEKTQKIL 141
Query 133 GTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDSYHTVWFELHEELIQAVGLTRD 192
+ P + R+ ++ AAL + + G+ +++ +DS HTVWF++HE +++ G R
Sbjct 142 APLIEADPLVERFLDRIGAALTRAEGGETDYVSGVRVDSAHTVWFQMHEHILRLTGRERP 201
Query 193 E 193
E
Sbjct 202 E 202
>gi|124263070|ref|YP_001023540.1| hypothetical protein Mpe_B0535 [Methylibium petroleiphilum PM1]
gi|124262316|gb|ABM97305.1| hypothetical protein Mpe_B0535 [Methylibium petroleiphilum PM1]
Length=190
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/199 (30%), Positives = 94/199 (48%), Gaps = 23/199 (11%)
Query 2 SELTVLQAVRLKGRVITTDLAQTLGEDLADVAATVDRLTAAGLLVDATPLRISPSGRMRL 61
+E VL AV LK V + + G + DVA ++ T G ++D + G M L
Sbjct 5 TEFLVLNAVYLKKMVTAPQIVEMTGAEADDVARCLEDATTRGWVMD-----MGADGVMVL 59
Query 62 DDLLAEE-RNRADSTV-------LAAAYRDFRSVNADFKRLVTDWQLKGEKPNTHDDAEY 113
DD AE ++ A++ V + A Y F ++N F V+ WQ ++E
Sbjct 60 DDGAAEVLKHYAEAYVEQRKDPAMTAWYHGFEALNTRFIAAVSQWQ----------ESEG 109
Query 114 DAAVLSRLDGVHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDSYH 173
D + RL R+ I + +PR + Y +L +++KV G+ ++ P +DS H
Sbjct 110 DPSSERRLLQAAERLAKDIALLMPAIPRYAGYVGRLERSMEKVDLGERDFVCNPTVDSVH 169
Query 174 TVWFELHEELIQAVGLTRD 192
VWFE HE+++ +G RD
Sbjct 170 NVWFEFHEDILTVLGRKRD 188
>gi|294816267|ref|ZP_06774910.1| Putative transcriptional regulator [Streptomyces clavuligerus
ATCC 27064]
gi|326444597|ref|ZP_08219331.1| hypothetical protein SclaA2_26186 [Streptomyces clavuligerus
ATCC 27064]
gi|294328866|gb|EFG10509.1| Putative transcriptional regulator [Streptomyces clavuligerus
ATCC 27064]
Length=210
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/120 (39%), Positives = 66/120 (55%), Gaps = 5/120 (4%)
Query 77 LAAAYRDFRSVNADFKRLVTDWQLK----GEKPNTHDDAEYDAAVLSRLDGVHRRVGPII 132
+AAAY F +N + L T WQL+ PN H D +YDA VL R ++ R ++
Sbjct 92 VAAAYARFLVLNPELLDLCTAWQLRVVDGASLPNDHLDPDYDALVLRRFADLNARADAVL 151
Query 133 GTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDSYHTVWFELHEELIQAVGLTRD 192
++ L R RY +L AL + AG+ +T SYHTVWF+LHE+L+ +GL R+
Sbjct 152 TELSSALARFGRYRFRLTVALTRAWAGERDRVTDS-TSSYHTVWFQLHEDLLATLGLPRE 210
>gi|269957214|ref|YP_003327003.1| hypothetical protein Xcel_2430 [Xylanimonas cellulosilytica DSM
15894]
gi|269305895|gb|ACZ31445.1| hypothetical protein Xcel_2430 [Xylanimonas cellulosilytica DSM
15894]
Length=210
Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 75/210 (36%), Positives = 105/210 (50%), Gaps = 14/210 (6%)
Query 1 MSELTVLQAVRLKGRVITTDLAQTLGEDLADVAATV----DRLTAA-GLLVDATPLRISP 55
MS L VL AVRL G +A+ G DVAA + DR A + ++
Sbjct 1 MSLLLVLHAVRLAGMADDDAVARRFGLPPDDVAAALRDAHDRGWAQRAQFAETAGWWLTE 60
Query 56 SGRMRLDDLLAEERNRADSTVLAAAY-RDFRSVNADFKRLVTDWQLK--GEK--PNTHDD 110
SGR + LLA E + A + AA DF +NA + VT WQL+ G++ P+ H D
Sbjct 61 SGRAENERLLAVELSAAGAGHAVAAVHEDFLPLNARLRNAVTRWQLRPAGDRLAPDDHTD 120
Query 111 AEYDAAVLSRLDGVHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLID 170
A++D AVL L + R + P+ +A L R S Y + AL + G W+ +D
Sbjct 121 ADWDDAVLDELAALDRALSPLARRLATHLDRFSGYDTRFSHALTRAWRGGRPWVDASDVD 180
Query 171 SYHTVWFELHEELIQAVGLTRDEAAKSGDA 200
S H VWFELHE+L+ +G+ R +GDA
Sbjct 181 SCHRVWFELHEDLVATLGIDR----GAGDA 206
>gi|159040054|ref|YP_001539307.1| hypothetical protein Sare_4548 [Salinispora arenicola CNS-205]
gi|157918889|gb|ABW00317.1| conserved hypothetical protein [Salinispora arenicola CNS-205]
Length=214
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/200 (28%), Positives = 95/200 (48%), Gaps = 11/200 (5%)
Query 3 ELTVLQAVRLKGRVITTDLAQTLGEDLADVAATVDRLTAAGLLV-----DATPLRISPSG 57
EL+VL A+R+ G +++ G D A + A G + + + ++ G
Sbjct 8 ELSVLHALRVTGVAGDAAVSRRSGIDQDTAAELLRDFEAYGWVTHVEFGETSGWALTEFG 67
Query 58 RMRLDDLLAEERNRADS-TVLAAAYRDFRSVNADFKRLVTDWQLK---GEK--PNTHDDA 111
R + LAEE ++A + A+++F +N + TDWQL+ G++ N H D
Sbjct 68 RDQDSRKLAEELDQAGGRATVEQAHKEFEVLNGRLVKACTDWQLRRTEGDRLASNDHSDP 127
Query 112 EYDAAVLSRLDGVHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDS 171
++D VL L + + + ++ L R Y + AL + +AGD W+ + S
Sbjct 128 QWDGRVLDELTVIGAELTRLTDSLVSVLARFDGYADRFGTALARARAGDGQWVAGVGVAS 187
Query 172 YHTVWFELHEELIQAVGLTR 191
H VW ELHE+L+ +G+ R
Sbjct 188 CHAVWMELHEDLLSTLGIPR 207
>gi|226349957|ref|YP_002777070.1| hypothetical protein ROP_pROB02-01260 [Rhodococcus opacus B4]
gi|226245872|dbj|BAH47139.1| hypothetical protein [Rhodococcus opacus B4]
Length=737
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/194 (30%), Positives = 85/194 (44%), Gaps = 16/194 (8%)
Query 3 ELTVLQAVRLKGRVITTDLAQTLGEDLADVAATVDRLTAAGLLVDATP----LRISPSGR 58
E VLQA+R +G ++ + G V V G + T ++P GR
Sbjct 550 EFEVLQAIRTRGFATVEQISISSGIPAERVREVVAASEEKGFVKQRTGRINGASLTPVGR 609
Query 59 MRLDDLLAEERNRADS-TVLAAAYRDFRSVNADFKRLVTDWQLKGEKPNTHDDAEYDAAV 117
RL L+ E AD + +AY F N FK + + WQ+ + T
Sbjct 610 ARLL-LVTEAAVTADQHAAITSAYAVFLGPNRAFKAIASSWQMDQDLTTT---------- 658
Query 118 LSRLDGVHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDSYHTVWF 177
L L VH V +I A PR Y +L A ++ + G+ L RP+++SYH +W
Sbjct 659 LGSLPPVHHDVAAVIAQAATAQPRFGLYRQRLDHAFEQFRNGNTDALARPMVESYHDIWM 718
Query 178 ELHEELIQAVGLTR 191
ELHE+L+ +G R
Sbjct 719 ELHEDLLATLGRAR 732
>gi|119964427|ref|YP_949773.1| hypothetical protein AAur_4106 [Arthrobacter aurescens TC1]
gi|119951286|gb|ABM10197.1| conserved hypothetical protein [Arthrobacter aurescens TC1]
Length=187
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/194 (32%), Positives = 85/194 (44%), Gaps = 16/194 (8%)
Query 4 LTVLQAVRLKGRVITTDLAQTLGEDLADVA-----ATVDRLTAAGLLVDATPLRISPSGR 58
L L AVRL G T +A +D V A V+ L + + +S GR
Sbjct 3 LLTLHAVRLLGFADTPTVAARFSQDPGLVESQLIDAGVNGLVSHSTFAGTSGWSLSSLGR 62
Query 59 MRLDDLLAEERNRADSTV-LAAAYRDFRSVNADFKRLVTDWQLKGEKPNTHDDAEYDAAV 117
LLAEE +R + + + A + DF +N + QL+ P+ +DA
Sbjct 63 AENQRLLAEELDRTGARIAVLAVHEDFADINTGVVAACSAIQLQ-TSPS--EDA------ 113
Query 118 LSRLDGVHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDSYHTVWF 177
+ L G P+ + LPR Y +L AL K D AWLT DS+H WF
Sbjct 114 MDVLIGALASWRPLEAQLTGLLPRFGGYSERLLLAL-KHAVQDTAWLTATDRDSFHRAWF 172
Query 178 ELHEELIQAVGLTR 191
ELHE+LI +G+ R
Sbjct 173 ELHEDLIATLGIQR 186
>gi|217979551|ref|YP_002363698.1| hypothetical protein Msil_3441 [Methylocella silvestris BL2]
gi|217504927|gb|ACK52336.1| conserved hypothetical protein [Methylocella silvestris BL2]
Length=206
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/122 (24%), Positives = 55/122 (46%), Gaps = 10/122 (8%)
Query 71 RADSTVLAAAYRDFRSVNADFKRLVTDWQLKGEKPNTHDDAEYDAAVLSRLDGVHRRVGP 130
RA + V+A + S+N F + V+DWQ D ++ + R+
Sbjct 94 RAQAGVIAWYDKFETSLNQQFIKAVSDWQTSAG----------DDRAREKMTKLVERMIR 143
Query 131 IIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDSYHTVWFELHEELIQAVGLT 190
+ + + R +Y + A+ G+ ++ +P +DS H +WFE HE+++ +G
Sbjct 144 TLRQITSDVSRYEKYANRFARAMALADRGEDDFVCKPTVDSMHNIWFEFHEDILALIGRP 203
Query 191 RD 192
RD
Sbjct 204 RD 205
>gi|238059912|ref|ZP_04604621.1| hypothetical protein MCAG_00878 [Micromonospora sp. ATCC 39149]
gi|237881723|gb|EEP70551.1| hypothetical protein MCAG_00878 [Micromonospora sp. ATCC 39149]
Length=74
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/75 (39%), Positives = 38/75 (51%), Gaps = 2/75 (2%)
Query 124 VHRRVGPIIGTVAMQLPRLSRYPVKLRAALDKVKAGDIAWLTRPLIDSYHTVWFELHEEL 183
+H RV P+I A PR + Y +L AL + GD LT SYH VW ELH +L
Sbjct 1 MHDRVRPVIDACAAVQPRFAAYRRRLDTALRRFTGGDADALTGVRQGSYHGVWMELHADL 60
Query 184 IQAVGLTRDEAAKSG 198
+ + L R A+ G
Sbjct 61 LTS--LDRPRTAQDG 73
Lambda K H
0.319 0.134 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 217214446392
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40