BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1129c Length=486 Score E Sequences producing significant alignments: (Bits) Value gi|15608269|ref|NP_215645.1| transcriptional regulator protein [... 998 0.0 gi|289753196|ref|ZP_06512574.1| transcriptional regulator [Mycob... 996 0.0 gi|340626142|ref|YP_004744594.1| putative transcriptional regula... 993 0.0 gi|308370626|ref|ZP_07422163.2| transcriptional regulator [Mycob... 980 0.0 gi|339294121|gb|AEJ46232.1| transcriptional regulator protein [M... 930 0.0 gi|333989719|ref|YP_004522333.1| transcriptional regulator [Myco... 717 0.0 gi|118472941|ref|YP_890853.1| DNA-binding protein [Mycobacterium... 648 0.0 gi|240169634|ref|ZP_04748293.1| transcriptional regulatory prote... 647 0.0 gi|342859975|ref|ZP_08716627.1| XRE family transcriptional regul... 635 4e-180 gi|169631690|ref|YP_001705339.1| transcriptional regulator prote... 632 5e-179 gi|183981401|ref|YP_001849692.1| transcriptional regulatory prot... 630 1e-178 gi|254822427|ref|ZP_05227428.1| transcriptional regulator, XRE f... 630 2e-178 gi|118617981|ref|YP_906313.1| transcriptional regulatory protein... 629 3e-178 gi|254773353|ref|ZP_05214869.1| hypothetical protein MaviaA2_015... 627 1e-177 gi|41406396|ref|NP_959232.1| hypothetical protein MAP0298 [Mycob... 626 2e-177 gi|118464968|ref|YP_879634.1| XRE family transcriptional regulat... 625 3e-177 gi|336460021|gb|EGO38931.1| putative transcriptional regulator [... 625 4e-177 gi|262201756|ref|YP_003272964.1| hypothetical protein Gbro_1813 ... 571 1e-160 gi|226308519|ref|YP_002768479.1| Xre family DNA-binding protein ... 569 5e-160 gi|229488531|ref|ZP_04382397.1| DNA-binding protein [Rhodococcus... 566 2e-159 gi|325674642|ref|ZP_08154329.1| DNA-binding protein [Rhodococcus... 552 4e-155 gi|312138366|ref|YP_004005702.1| transcriptional regulator [Rhod... 548 6e-154 gi|226362462|ref|YP_002780240.1| Xre family DNA-binding protein ... 541 1e-151 gi|54026164|ref|YP_120406.1| putative DNA-binding protein [Nocar... 527 2e-147 gi|83593651|ref|YP_427403.1| XRE family transcriptional regulato... 522 5e-146 gi|326381997|ref|ZP_08203690.1| hypothetical protein SCNU_03597 ... 512 6e-143 gi|319793072|ref|YP_004154712.1| XRE family transcriptional regu... 501 8e-140 gi|300023570|ref|YP_003756181.1| XRE family transcriptional regu... 498 8e-139 gi|257056813|ref|YP_003134645.1| putative transcriptional regula... 496 3e-138 gi|148557685|ref|YP_001265267.1| XRE family transcriptional regu... 486 4e-135 gi|192291025|ref|YP_001991630.1| XRE family transcriptional regu... 485 8e-135 gi|94498385|ref|ZP_01304943.1| Transcriptional Regulator, XRE fa... 475 6e-132 gi|209967048|ref|YP_002299963.1| hypothetical protein RC1_3808 [... 473 5e-131 gi|300783560|ref|YP_003763851.1| XRE family transcriptional regu... 470 2e-130 gi|312114583|ref|YP_004012179.1| XRE family transcriptional regu... 469 6e-130 gi|302524912|ref|ZP_07277254.1| DNA-binding protein [Streptomyce... 468 7e-130 gi|121611363|ref|YP_999170.1| hypothetical protein Veis_4449 [Ve... 468 1e-129 gi|160901295|ref|YP_001566877.1| XRE family transcriptional regu... 467 2e-129 gi|333912394|ref|YP_004486126.1| XRE family transcriptional regu... 466 4e-129 gi|338973436|ref|ZP_08628799.1| transcriptional regulator, XRE f... 466 5e-129 gi|115525178|ref|YP_782089.1| XRE family transcriptional regulat... 459 4e-127 gi|90425003|ref|YP_533373.1| XRE family transcriptional regulato... 457 2e-126 gi|294678861|ref|YP_003579476.1| XRE family transcriptional regu... 455 7e-126 gi|319762600|ref|YP_004126537.1| hypothetical protein Alide_1906... 455 8e-126 gi|254390935|ref|ZP_05006145.1| transcriptional regulator [Strep... 454 1e-125 gi|221068405|ref|ZP_03544510.1| transcriptional regulator, XRE f... 450 2e-124 gi|340625491|ref|YP_004743943.1| putative transcriptional regula... 447 2e-123 gi|239988933|ref|ZP_04709597.1| XRE family transcriptional regul... 447 2e-123 gi|182435435|ref|YP_001823154.1| putative DNA-binding protein [S... 446 3e-123 gi|289756539|ref|ZP_06515917.1| transcriptional regulatory prote... 446 5e-123 >gi|15608269|ref|NP_215645.1| transcriptional regulator protein [Mycobacterium tuberculosis H37Rv] gi|15840567|ref|NP_335604.1| DNA-binding protein, putative [Mycobacterium tuberculosis CDC1551] gi|31792323|ref|NP_854816.1| transcriptional regulator protein [Mycobacterium bovis AF2122/97] 64 more sequence titles Length=486 Score = 998 bits (2580), Expect = 0.0, Method: Compositional matrix adjust. Identities = 486/486 (100%), Positives = 486/486 (100%), Gaps = 0/486 (0%) Query 1 MTRSNVLPVARTYSRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVP 60 MTRSNVLPVARTYSRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVP Sbjct 1 MTRSNVLPVARTYSRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVP 60 Query 61 VLLLLTERFDLSAQYFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSL 120 VLLLLTERFDLSAQYFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSL Sbjct 61 VLLLLTERFDLSAQYFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSL 120 Query 121 VAVHRRLRAATEELEGYRSRATAETELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMF 180 VAVHRRLRAATEELEGYRSRATAETELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMF Sbjct 121 VAVHRRLRAATEELEGYRSRATAETELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMF 180 Query 181 TESGMRTGGLDIQLAELMRDRFGISVVIDDNLPDTAKRRYHPDTKVLRVAHWLMPGQRAF 240 TESGMRTGGLDIQLAELMRDRFGISVVIDDNLPDTAKRRYHPDTKVLRVAHWLMPGQRAF Sbjct 181 TESGMRTGGLDIQLAELMRDRFGISVVIDDNLPDTAKRRYHPDTKVLRVAHWLMPGQRAF 240 Query 241 QIATQLALVGQSDLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLR 300 QIATQLALVGQSDLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLR Sbjct 241 QIATQLALVGQSDLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLR 300 Query 301 YDIDLLGRRFGVGFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVG 360 YDIDLLGRRFGVGFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVG Sbjct 301 YDIDLLGRRFGVGFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVG 360 Query 361 GSCPLWVVHDAFAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDL 420 GSCPLWVVHDAFAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDL Sbjct 361 GSCPLWVVHDAFAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDL 420 Query 421 AHAHKLVYSTGVVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPYS 480 AHAHKLVYSTGVVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPYS Sbjct 421 AHAHKLVYSTGVVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPYS 480 Query 481 STEQSV 486 STEQSV Sbjct 481 STEQSV 486 >gi|289753196|ref|ZP_06512574.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|289693783|gb|EFD61212.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] Length=486 Score = 996 bits (2575), Expect = 0.0, Method: Compositional matrix adjust. Identities = 485/486 (99%), Positives = 485/486 (99%), Gaps = 0/486 (0%) Query 1 MTRSNVLPVARTYSRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVP 60 MTRSNVLPVARTYSRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVP Sbjct 1 MTRSNVLPVARTYSRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVP 60 Query 61 VLLLLTERFDLSAQYFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSL 120 VLLLLTERFDLSAQYFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSL Sbjct 61 VLLLLTERFDLSAQYFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSL 120 Query 121 VAVHRRLRAATEELEGYRSRATAETELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMF 180 VAVHRRLRAATEELEGYRSRATAETELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMF Sbjct 121 VAVHRRLRAATEELEGYRSRATAETELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMF 180 Query 181 TESGMRTGGLDIQLAELMRDRFGISVVIDDNLPDTAKRRYHPDTKVLRVAHWLMPGQRAF 240 TESGMRTGGLDIQLAELMRDRFGISVVIDDNLPDTAKRRYHPDTKVLRVAHWLMPGQRAF Sbjct 181 TESGMRTGGLDIQLAELMRDRFGISVVIDDNLPDTAKRRYHPDTKVLRVAHWLMPGQRAF 240 Query 241 QIATQLALVGQSDLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLR 300 QIATQLALVGQSDLISSIVATDDQLSTEAR VARIGLANYFAGAFLLPYREFHRAAEQLR Sbjct 241 QIATQLALVGQSDLISSIVATDDQLSTEARSVARIGLANYFAGAFLLPYREFHRAAEQLR 300 Query 301 YDIDLLGRRFGVGFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVG 360 YDIDLLGRRFGVGFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVG Sbjct 301 YDIDLLGRRFGVGFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVG 360 Query 361 GSCPLWVVHDAFAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDL 420 GSCPLWVVHDAFAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDL Sbjct 361 GSCPLWVVHDAFAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDL 420 Query 421 AHAHKLVYSTGVVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPYS 480 AHAHKLVYSTGVVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPYS Sbjct 421 AHAHKLVYSTGVVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPYS 480 Query 481 STEQSV 486 STEQSV Sbjct 481 STEQSV 486 >gi|340626142|ref|YP_004744594.1| putative transcriptional regulator protein [Mycobacterium canettii CIPT 140010059] gi|340004332|emb|CCC43474.1| putative transcriptional regulator protein [Mycobacterium canettii CIPT 140010059] Length=486 Score = 993 bits (2567), Expect = 0.0, Method: Compositional matrix adjust. Identities = 484/486 (99%), Positives = 485/486 (99%), Gaps = 0/486 (0%) Query 1 MTRSNVLPVARTYSRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVP 60 MTRSNVLPVARTYSRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVP Sbjct 1 MTRSNVLPVARTYSRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVP 60 Query 61 VLLLLTERFDLSAQYFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSL 120 VLLLLTERFDLSAQYFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSL Sbjct 61 VLLLLTERFDLSAQYFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSL 120 Query 121 VAVHRRLRAATEELEGYRSRATAETELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMF 180 VAVHRRLRAATEELEGYRSRATAETELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMF Sbjct 121 VAVHRRLRAATEELEGYRSRATAETELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMF 180 Query 181 TESGMRTGGLDIQLAELMRDRFGISVVIDDNLPDTAKRRYHPDTKVLRVAHWLMPGQRAF 240 TESGMRTGGLDIQLAELMRDRFGISVVIDD+LPDTAKRRYHPDTKVLRVAHWLMPGQRAF Sbjct 181 TESGMRTGGLDIQLAELMRDRFGISVVIDDDLPDTAKRRYHPDTKVLRVAHWLMPGQRAF 240 Query 241 QIATQLALVGQSDLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLR 300 QIATQLALVGQSDLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLR Sbjct 241 QIATQLALVGQSDLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLR 300 Query 301 YDIDLLGRRFGVGFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVG 360 YDIDLLGRRFGVGFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVG Sbjct 301 YDIDLLGRRFGVGFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVG 360 Query 361 GSCPLWVVHDAFAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDL 420 GSCPLWVVHDAFAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDL Sbjct 361 GSCPLWVVHDAFAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDL 420 Query 421 AHAHKLVYSTGVVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPYS 480 AHAHKLVYSTGVVLDDPST VPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPYS Sbjct 421 AHAHKLVYSTGVVLDDPSTAVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPYS 480 Query 481 STEQSV 486 STEQSV Sbjct 481 STEQSV 486 >gi|308370626|ref|ZP_07422163.2| transcriptional regulator [Mycobacterium tuberculosis SUMu003] gi|308374223|ref|ZP_07435239.2| transcriptional regulator [Mycobacterium tuberculosis SUMu006] gi|308375371|ref|ZP_07443665.2| transcriptional regulator [Mycobacterium tuberculosis SUMu007] 8 more sequence titles Length=478 Score = 980 bits (2534), Expect = 0.0, Method: Compositional matrix adjust. Identities = 477/478 (99%), Positives = 478/478 (100%), Gaps = 0/478 (0%) Query 9 VARTYSRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTER 68 +ARTYSRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTER Sbjct 1 MARTYSRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTER 60 Query 69 FDLSAQYFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLR 128 FDLSAQYFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLR Sbjct 61 FDLSAQYFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLR 120 Query 129 AATEELEGYRSRATAETELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTG 188 AATEELEGYRSRATAETELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTG Sbjct 121 AATEELEGYRSRATAETELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTG 180 Query 189 GLDIQLAELMRDRFGISVVIDDNLPDTAKRRYHPDTKVLRVAHWLMPGQRAFQIATQLAL 248 GLDIQLAELMRDRFGISVVIDDNLPDTAKRRYHPDTKVLRVAHWLMPGQRAFQIATQLAL Sbjct 181 GLDIQLAELMRDRFGISVVIDDNLPDTAKRRYHPDTKVLRVAHWLMPGQRAFQIATQLAL 240 Query 249 VGQSDLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGR 308 VGQSDLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGR Sbjct 241 VGQSDLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGR 300 Query 309 RFGVGFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVV 368 RFGVGFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVV Sbjct 301 RFGVGFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVV 360 Query 369 HDAFAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVY 428 HDAFAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVY Sbjct 361 HDAFAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVY 420 Query 429 STGVVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPYSSTEQSV 486 STGVVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPYSSTEQSV Sbjct 421 STGVVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPYSSTEQSV 478 >gi|339294121|gb|AEJ46232.1| transcriptional regulator protein [Mycobacterium tuberculosis CCDC5079] Length=453 Score = 930 bits (2403), Expect = 0.0, Method: Compositional matrix adjust. Identities = 451/453 (99%), Positives = 452/453 (99%), Gaps = 0/453 (0%) Query 34 VALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSAQYFSSDSDARLVADLSDVFT 93 +ALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSAQYFSSDSDARLVADLSDVFT Sbjct 1 MALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSAQYFSSDSDARLVADLSDVFT 60 Query 94 DIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAATEELEGYRSRATAETELPPARPM 153 DIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAA EELEGYRSRATAETELPPARPM Sbjct 61 DIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAAPEELEGYRSRATAETELPPARPM 120 Query 154 PFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTGGLDIQLAELMRDRFGISVVIDDNLP 213 PFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTGGLDIQLAELMRDRFGISVVIDDNLP Sbjct 121 PFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTGGLDIQLAELMRDRFGISVVIDDNLP 180 Query 214 DTAKRRYHPDTKVLRVAHWLMPGQRAFQIATQLALVGQSDLISSIVATDDQLSTEARGVA 273 DTAKRRYHPDTKVLRVAHWLMPGQRAFQIATQLALVGQSDLISSIVATDDQLSTEARGVA Sbjct 181 DTAKRRYHPDTKVLRVAHWLMPGQRAFQIATQLALVGQSDLISSIVATDDQLSTEARGVA 240 Query 274 RIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGRRFGVGFETVCHRLSTLQRPRQRGIP 333 RIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGRRFGVGFETVCHRLSTLQRPRQRGIP Sbjct 241 RIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGRRFGVGFETVCHRLSTLQRPRQRGIP 300 Query 334 FIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVHDAFAQPERIVRQVAQMPDGRSYFW 393 FIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVHDAFAQPERIVRQVAQMPDGRSYFW Sbjct 301 FIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVHDAFAQPERIVRQVAQMPDGRSYFW 360 Query 394 VAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVYSTGVVLDDPSTEVPIGAGCKICNRT 453 VAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVYSTGVVLDDPSTEVPIGAGCKICNRT Sbjct 361 VAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVYSTGVVLDDPSTEVPIGAGCKICNRT 420 Query 454 SCAQRAFPYLGGRVAVDENAGSSLPYSSTEQSV 486 SCAQRAFPYLGGRVAVDENAGSSLPYSSTEQSV Sbjct 421 SCAQRAFPYLGGRVAVDENAGSSLPYSSTEQSV 453 >gi|333989719|ref|YP_004522333.1| transcriptional regulator [Mycobacterium sp. JDM601] gi|333485686|gb|AEF35078.1| transcriptional regulatory protein [Mycobacterium sp. JDM601] Length=479 Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/472 (75%), Positives = 405/472 (86%), Gaps = 0/472 (0%) Query 9 VARTYSRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTER 68 +A + +RTF+GARLRRLR+ERGLTQVALA+AL+LSTSYVNQLENDQRPITVPVLL LT+R Sbjct 1 MAPSTTRTFAGARLRRLREERGLTQVALARALNLSTSYVNQLENDQRPITVPVLLALTDR 60 Query 69 FDLSAQYFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLR 128 F L AQYFS DSDARLVADL D+FT EHA S +QIEE VARMP++G+SL+ +HR+LR Sbjct 61 FSLPAQYFSGDSDARLVADLRDMFTAAAGEHAASDSQIEELVARMPDIGNSLLTMHRQLR 120 Query 129 AATEELEGYRSRATAETELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTG 188 ATEELE YR R + + P A PMPFEEVRDFFYDR+NYI +LD AAE++F ++GMR G Sbjct 121 GATEELESYRLRMSGDAAQPVAHPMPFEEVRDFFYDRSNYIAELDNAAEKLFIDTGMRFG 180 Query 189 GLDIQLAELMRDRFGISVVIDDNLPDTAKRRYHPDTKVLRVAHWLMPGQRAFQIATQLAL 248 GLDIQL+ L+ + FGI+V I D+LP KR + P T+VLR+AHWL+ GQRAFQ+ATQLAL Sbjct 181 GLDIQLSALLAEHFGITVAIVDDLPAGTKRLFDPATRVLRIAHWLLAGQRAFQMATQLAL 240 Query 249 VGQSDLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGR 308 + Q+DL+S IVA D+ LS E+RGVARIGLANYFAGAFLLPYR+FHR+A +LRYDIDLLGR Sbjct 241 LTQADLLSDIVAQDESLSPESRGVARIGLANYFAGAFLLPYRQFHRSATELRYDIDLLGR 300 Query 309 RFGVGFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVV 368 RF VGFETVCHRLSTLQRP +RG+PFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVV Sbjct 301 RFEVGFETVCHRLSTLQRPGRRGVPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVV 360 Query 369 HDAFAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVY 428 HDAF+QP RI+ QVAQMPDGR YFW+A TT +G GYLG HK FAVGLGCDLAHA KLVY Sbjct 361 HDAFSQPGRIITQVAQMPDGRKYFWIATTTPPEGRGYLGQHKTFAVGLGCDLAHADKLVY 420 Query 429 STGVVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPYS 480 STGV LDD +T VPIGAGCKIC+R +C QRAFP+LG RV VDENAGS LPYS Sbjct 421 STGVALDDQATVVPIGAGCKICDREACPQRAFPFLGRRVVVDENAGSGLPYS 472 >gi|118472941|ref|YP_890853.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155] gi|118174228|gb|ABK75124.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155] Length=472 Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust. Identities = 319/472 (68%), Positives = 367/472 (78%), Gaps = 6/472 (1%) Query 14 SRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSA 73 ++TF G RLRRLR+E GLTQVALA+AL LSTSY+NQLENDQRP+TVPVLL L+ERFDL Sbjct 2 AKTFIGPRLRRLREEHGLTQVALARALGLSTSYINQLENDQRPVTVPVLLSLSERFDLPT 61 Query 74 QYFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAATEE 133 YF+ DSDARLV+DL D+ D A + AQIEE VARMP VG +LV +HRRL AT E Sbjct 62 HYFTPDSDARLVSDLRDILVD----SAATQAQIEELVARMPAVGQTLVTLHRRLFDATTE 117 Query 134 LEGYRSRATAETELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTGGLDIQ 193 LE +RA+A+ +P +PMPFEEVRDFFYDR N++ +LD AAE +F G+R GGLD Q Sbjct 118 LEAMHTRASADAPVPLQQPMPFEEVRDFFYDRKNHVAELDQAAEGVFDRRGLRIGGLDAQ 177 Query 194 LAELMRDRFGISVVIDDN--LPDTAKRRYHPDTKVLRVAHWLMPGQRAFQIATQLALVGQ 251 LAEL+ D GI+VVIDD L KR Y PD L VA WL PGQRAFQIATQ AL+ Q Sbjct 178 LAELLSDELGINVVIDDGQVLSANGKRIYRPDHATLYVARWLHPGQRAFQIATQYALLTQ 237 Query 252 SDLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGRRFG 311 ++LI+ +VA D LSTEAR VARIGLANY+AGA LLPYR F AAE+LRYDID L RRF Sbjct 238 AELIAELVADADDLSTEAREVARIGLANYYAGALLLPYRMFLAAAEELRYDIDRLARRFE 297 Query 312 VGFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVHDA 371 VGFETVCHRLSTLQRP RG+PFIFVRTD AGNISKRQSATAFHFSRVGG+CPLWVVH A Sbjct 298 VGFETVCHRLSTLQRPDARGVPFIFVRTDNAGNISKRQSATAFHFSRVGGNCPLWVVHQA 357 Query 372 FAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVYSTG 431 FAQP + V QVAQMPDGRSYFW+A+TTA YLGP K+FA+GLGCDLAHAH+L+YS G Sbjct 358 FAQPGQFVTQVAQMPDGRSYFWIARTTAPSQSSYLGPTKSFAIGLGCDLAHAHRLIYSAG 417 Query 432 VVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPYSSTE 483 + L D + VPIGAGCK+C R +C QRAFPY+G V VD +A S LPY + Sbjct 418 IDLADEAAAVPIGAGCKVCERPACPQRAFPYIGRPVKVDPHASSDLPYPTVN 469 >gi|240169634|ref|ZP_04748293.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC 12478] Length=471 Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust. Identities = 316/468 (68%), Positives = 375/468 (81%), Gaps = 6/468 (1%) Query 14 SRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSA 73 ++TF+GARLRRLR+E+GLTQ+ALA+ALDLSTSYVNQLENDQRPITVPVLL LTERF L Sbjct 2 AKTFAGARLRRLREEQGLTQMALARALDLSTSYVNQLENDQRPITVPVLLALTERFGLPT 61 Query 74 QYFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAATEE 133 +YF+ D+DARLV+DL +V E + AQIEE VARMP VG +LV +HRRL AT E Sbjct 62 RYFAPDTDARLVSDLREVLA----EGPATAAQIEELVARMPAVGQTLVNLHRRLHDATAE 117 Query 134 LEGYRSRATAETELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTGGLDIQ 193 LE SRATA+ PA+PMPFEEVRDFFYDR NYI +LD AAE +FT + +R GGLD+Q Sbjct 118 LEALHSRATADVPAVPAQPMPFEEVRDFFYDRKNYIGELDTAAEDLFTRNRLRIGGLDVQ 177 Query 194 LAELMRDRFGISVVIDDN--LPDTAKRRYHPDTKVLRVAHWLMPGQRAFQIATQLALVGQ 251 LA+L+ D+ G+ VVIDD LP KR +H ++K L +A WL PGQRAFQ+ATQ+AL+ Q Sbjct 178 LAQLLTDKLGVRVVIDDGEALPRNGKRVFHAESKTLYLARWLHPGQRAFQLATQVALLTQ 237 Query 252 SDLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGRRFG 311 +D I+ I+A DDQLS +ARGVARIGLANYFAGA LLPY F AA+ +RYDID L RRF Sbjct 238 ADEIAGIIAGDDQLSDDARGVARIGLANYFAGALLLPYVLFLDAAQSVRYDIDQLARRFE 297 Query 312 VGFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVHDA 371 VGFET+CHRLSTLQRP RGIPFIFVRTD AGNISKRQSATAFHFSRVGG+CPLWVVH A Sbjct 298 VGFETICHRLSTLQRPGVRGIPFIFVRTDSAGNISKRQSATAFHFSRVGGNCPLWVVHHA 357 Query 372 FAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVYSTG 431 FA+P + + QVAQMPD RSYFW+A+TT A+ YLGP K+FA+GLGCD++HA KLVYS G Sbjct 358 FARPGQFLTQVAQMPDRRSYFWIARTTTAEPSRYLGPAKSFAIGLGCDVSHAEKLVYSVG 417 Query 432 VVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPY 479 + L DP VPIGAGCKIC+R +C+QRAFPYLG V +D ++ + LPY Sbjct 418 IDLADPEATVPIGAGCKICDRPACSQRAFPYLGRPVHIDPDSSTDLPY 465 >gi|342859975|ref|ZP_08716627.1| XRE family transcriptional regulator [Mycobacterium colombiense CECT 3035] gi|342132353|gb|EGT85582.1| XRE family transcriptional regulator [Mycobacterium colombiense CECT 3035] Length=471 Score = 635 bits (1639), Expect = 4e-180, Method: Compositional matrix adjust. Identities = 311/468 (67%), Positives = 370/468 (80%), Gaps = 6/468 (1%) Query 14 SRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSA 73 ++TF+GARLRRLR+E+GLTQVALA+ L LSTSYVNQLENDQRPITVPVLL LTERFDL Sbjct 2 AKTFAGARLRRLREEQGLTQVALARVLGLSTSYVNQLENDQRPITVPVLLTLTERFDLPT 61 Query 74 QYFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAATEE 133 YF+ +SDARLV+DL +V D + AQ+EE VARMP +G +LV +HRRL T E Sbjct 62 HYFAPESDARLVSDLREVLADA----PATAAQVEELVARMPAIGQTLVNLHRRLHDTTAE 117 Query 134 LEGYRSRATAETELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTGGLDIQ 193 LE SRA+A+T P +PMPFEEVRDFFYDR NYI +LD AAE +F E+ +R GGLD Q Sbjct 118 LEALHSRASADTSGMPQQPMPFEEVRDFFYDRKNYIGELDTAAEDLFNENRLRIGGLDGQ 177 Query 194 LAELMRDRFGISVVIDDN--LPDTAKRRYHPDTKVLRVAHWLMPGQRAFQIATQLALVGQ 251 LA+L+ DR G++VVIDD L +KR + P++K L VA WL PGQRAFQ+ATQ+AL+ Q Sbjct 178 LAQLLADRLGVTVVIDDGQALDPNSKRLFAPESKTLYVARWLHPGQRAFQLATQIALLTQ 237 Query 252 SDLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGRRFG 311 LI+ I+A DDQLS +ARGVARIGLANYFAGA LLPY F AAE +RYDID L RRF Sbjct 238 DRLITGIIAADDQLSDDARGVARIGLANYFAGALLLPYLRFLDAAESVRYDIDQLARRFE 297 Query 312 VGFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVHDA 371 VGFET+CHRLSTLQRP RGIPFIFVRTD AGNISKRQSATAFHFSRVGG+CPLWVVH A Sbjct 298 VGFETICHRLSTLQRPNARGIPFIFVRTDSAGNISKRQSATAFHFSRVGGNCPLWVVHHA 357 Query 372 FAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVYSTG 431 F++P + + QVAQMPD R+YFWVA+TTA++ YLGP K+FA+GLGCD+AHA KL+YS G Sbjct 358 FSRPGQFLTQVAQMPDDRTYFWVARTTASEPSRYLGPDKSFAIGLGCDVAHAGKLIYSVG 417 Query 432 VVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPY 479 + + + VPIGAGCKIC+R +C QRAFPYLG V VD ++ + LPY Sbjct 418 IDPTNAESIVPIGAGCKICDRPACPQRAFPYLGRPVYVDPHSSTDLPY 465 >gi|169631690|ref|YP_001705339.1| transcriptional regulator protein [Mycobacterium abscessus ATCC 19977] gi|169243657|emb|CAM64685.1| Probable transcriptional regulator protein [Mycobacterium abscessus] Length=473 Score = 632 bits (1629), Expect = 5e-179, Method: Compositional matrix adjust. Identities = 315/473 (67%), Positives = 374/473 (80%), Gaps = 7/473 (1%) Query 14 SRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSA 73 SR F+GARLRRLR+ERGLTQ ALA+ LDLSTSYVNQLEND RP+TV VLL LTERFDLS Sbjct 2 SRPFAGARLRRLREERGLTQAALARVLDLSTSYVNQLENDTRPVTVAVLLRLTERFDLSP 61 Query 74 QYFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAATEE 133 YFS DSDARLVADL ++FT+ V VS Q+EE VARMP VG +LV +HRRLR T E Sbjct 62 HYFSPDSDARLVADLGEIFTEAAVGE-VSDLQLEELVARMPSVGQTLVGMHRRLRDVTAE 120 Query 134 LEGYRSRATAET----ELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTGG 189 LE YR+ AET P RPMPFEEVRDFFYD NY+ +LD AAE +F G+ GG Sbjct 121 LESYRATENAETIGDSVREPLRPMPFEEVRDFFYDHKNYLGELDTAAEDLFEHYGLHVGG 180 Query 190 LDIQLAELMRDRFGISVVIDD--NLPDTAKRRYHPDTKVLRVAHWLMPGQRAFQIATQLA 247 LDIQLA +++ GI+V ++ D++KRR+ VLR+AHWL PGQRAFQ+ATQLA Sbjct 181 LDIQLATVLKQDLGIAVAVNKAGEPSDSSKRRFDATAGVLRIAHWLTPGQRAFQMATQLA 240 Query 248 LVGQSDLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLG 307 LV Q++ +++I+A DQLS EA GVARIGLANYFAGAFLLPY++FH AAE RYD+D+L Sbjct 241 LVTQTETMAAILAGADQLSPEAIGVARIGLANYFAGAFLLPYKQFHHAAESSRYDVDILA 300 Query 308 RRFGVGFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWV 367 R+F VG ETVCHRLSTLQRP RG+PFI VRTD+AGNISKRQSATAFHFSRVGG+CPLWV Sbjct 301 RQFEVGHETVCHRLSTLQRPSMRGVPFILVRTDRAGNISKRQSATAFHFSRVGGNCPLWV 360 Query 368 VHDAFAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLV 427 VH+AF+ P + V QVA+MPDGR+YFWVA+T++ G+L K+FA+GLGCD+AHAH+LV Sbjct 361 VHEAFSNPGQFVTQVAEMPDGRTYFWVARTSSTSTGGFLSTPKSFAIGLGCDIAHAHRLV 420 Query 428 YSTGVVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPYS 480 YSTG+ +DDPST VPIG GCK+C R SCAQRAFPY+G V VDE+A S LPY+ Sbjct 421 YSTGIAIDDPSTAVPIGPGCKVCVRESCAQRAFPYIGRSVHVDEDASSGLPYT 473 >gi|183981401|ref|YP_001849692.1| transcriptional regulatory protein [Mycobacterium marinum M] gi|183174727|gb|ACC39837.1| transcriptional regulatory protein [Mycobacterium marinum M] Length=473 Score = 630 bits (1626), Expect = 1e-178, Method: Compositional matrix adjust. Identities = 314/467 (68%), Positives = 361/467 (78%), Gaps = 6/467 (1%) Query 15 RTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSAQ 74 +TF+GARLRRLR++ GLTQVALA+AL LSTSYVNQLENDQRPITV VLL L ERFDL Sbjct 3 KTFAGARLRRLREDHGLTQVALARALGLSTSYVNQLENDQRPITVSVLLALAERFDLPTH 62 Query 75 YFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAATEEL 134 YF+ DSDARLV+DL +VF E + AQIEE VARMP VG +LV +HRRL AT EL Sbjct 63 YFAPDSDARLVSDLREVF----AEGPATPAQIEELVARMPAVGQTLVNLHRRLYDATAEL 118 Query 135 EGYRSRATAETELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTGGLDIQL 194 E SRATA+ +PMPFEEVRDFFYDR NYI +LD+AAE MF G+R GGLD QL Sbjct 119 EALHSRATADVSAVSGQPMPFEEVRDFFYDRKNYIGELDIAAEEMFGRHGLRLGGLDAQL 178 Query 195 AELMRDRFGISVVIDD--NLPDTAKRRYHPDTKVLRVAHWLMPGQRAFQIATQLALVGQS 252 A L+ D G +VV+DD +L +KR + P++K L +A WL GQRAFQ+ATQ+AL+ Q+ Sbjct 179 ARLLGDNLGTTVVLDDGQSLNPNSKRMFQPESKTLYLARWLNRGQRAFQLATQIALLTQA 238 Query 253 DLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGRRFGV 312 DLI+ I+A DDQLS EARGVARIGLANYFAGA LLPYR F AA RYDID L RRF V Sbjct 239 DLITGIIAGDDQLSDEARGVARIGLANYFAGALLLPYRPFLDAAASTRYDIDQLARRFEV 298 Query 313 GFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVHDAF 372 GFET+CHRLSTLQRP RG+PFIFVRTD AGNISKRQSATAFHFSRVGG+CPLWV+H AF Sbjct 299 GFETICHRLSTLQRPNARGVPFIFVRTDSAGNISKRQSATAFHFSRVGGNCPLWVIHQAF 358 Query 373 AQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVYSTGV 432 A+P R + QVAQMPD R+YFW+A+TT A+ YLGP K+FA+GLGCDLAHA KL+YS GV Sbjct 359 ARPGRFLTQVAQMPDERTYFWIARTTTAEPSRYLGPGKSFAIGLGCDLAHADKLIYSVGV 418 Query 433 VLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPY 479 L D IGAGCKIC+R SC QRAFPYLG V VD + + LPY Sbjct 419 DLTDTEAIAAIGAGCKICDRPSCPQRAFPYLGRPVRVDPHTSTDLPY 465 >gi|254822427|ref|ZP_05227428.1| transcriptional regulator, XRE family protein [Mycobacterium intracellulare ATCC 13950] Length=477 Score = 630 bits (1624), Expect = 2e-178, Method: Compositional matrix adjust. Identities = 306/473 (65%), Positives = 372/473 (79%), Gaps = 9/473 (1%) Query 12 TYSRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDL 71 + ++TF+GARLRRLR+E+GLTQVALA+ L LSTSYVNQLENDQRPITVPVLL LTERFDL Sbjct 3 SVAKTFAGARLRRLREEQGLTQVALARVLGLSTSYVNQLENDQRPITVPVLLTLTERFDL 62 Query 72 SAQYFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAAT 131 +QYF+ +SDARL++DL +V E + Q+EE VARMP +G +LV +HRRL T Sbjct 63 PSQYFAPESDARLISDLREVLA----EAPATAGQVEELVARMPAIGQTLVNLHRRLHDTT 118 Query 132 EELEGYRSRATAETELPPA---RPMPFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTG 188 +LE SRA +E + +PMPFEEVRDFFYDR NYI +LD+AAE +FT++ +R G Sbjct 119 ADLEALHSRANSEVSDASSLSQQPMPFEEVRDFFYDRKNYIGELDLAAEELFTKNHLRIG 178 Query 189 GLDIQLAELMRDRFGISVVIDDN--LPDTAKRRYHPDTKVLRVAHWLMPGQRAFQIATQL 246 GLD QLAEL+ ++ G+SVVIDD L +KRR+ P++K L +A WL PGQRAFQ+ATQ+ Sbjct 179 GLDGQLAELLAEQLGVSVVIDDGQVLDPNSKRRFAPESKTLYLARWLHPGQRAFQLATQI 238 Query 247 ALVGQSDLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLL 306 AL+ Q+ LI+ I+A DDQLS +AR VARIGLANYFAGA LLPY F AAE +RYDID L Sbjct 239 ALLTQAKLITGIIAGDDQLSDDARSVARIGLANYFAGALLLPYLRFLEAAEDVRYDIDQL 298 Query 307 GRRFGVGFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLW 366 RRF VGFET+CHRLSTLQRP RG+PFIFVRTD AGNISKRQSATAFHFSRVGG+CPLW Sbjct 299 ARRFEVGFETICHRLSTLQRPNARGVPFIFVRTDSAGNISKRQSATAFHFSRVGGNCPLW 358 Query 367 VVHDAFAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKL 426 VVH AF++P + + QVAQMPD R+YFWVA+TT + YLGP K+FA+GLGCD+AHA KL Sbjct 359 VVHHAFSRPGQFLTQVAQMPDERTYFWVARTTTTEPSRYLGPDKSFAIGLGCDVAHAEKL 418 Query 427 VYSTGVVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPY 479 +YS G+ L D + VPIGAGCKIC+R +C QRAFPYLG V VD ++ + LPY Sbjct 419 IYSVGIDLGDAESIVPIGAGCKICDRPACPQRAFPYLGHPVYVDPHSSTDLPY 471 >gi|118617981|ref|YP_906313.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99] gi|118570091|gb|ABL04842.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99] Length=483 Score = 629 bits (1622), Expect = 3e-178, Method: Compositional matrix adjust. Identities = 313/467 (68%), Positives = 362/467 (78%), Gaps = 6/467 (1%) Query 15 RTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSAQ 74 +TF+GARLRRLR++ GLTQVALA+AL LSTSYVNQLENDQRPITV VLL L ERFDL Sbjct 13 KTFAGARLRRLREDHGLTQVALARALGLSTSYVNQLENDQRPITVSVLLALAERFDLPTH 72 Query 75 YFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAATEEL 134 YF+ DSDARLV+DL +VF E + AQIEE VARMP VG +LV +HRRL AT EL Sbjct 73 YFAPDSDARLVSDLREVF----AEGPATPAQIEELVARMPAVGQTLVNLHRRLYDATAEL 128 Query 135 EGYRSRATAETELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTGGLDIQL 194 E SRATA+ +PMPFEEVRDFFYDR NYI +LD+AAE+MF G+ GGLD QL Sbjct 129 EALHSRATADVSAVSGQPMPFEEVRDFFYDRKNYIGELDIAAEQMFGRHGLHLGGLDAQL 188 Query 195 AELMRDRFGISVVIDD--NLPDTAKRRYHPDTKVLRVAHWLMPGQRAFQIATQLALVGQS 252 A L+ D GI+VV+DD +L +KR + P++K L +A WL GQRAFQ+ATQ+AL+ Q+ Sbjct 189 ARLLGDNLGITVVLDDGQSLNPNSKRMFQPESKTLYLARWLNRGQRAFQLATQIALLTQA 248 Query 253 DLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGRRFGV 312 DLI+ I+A DDQLS EARGVARIGLANYFAGA LLPYR F AA RYDID L RRF V Sbjct 249 DLITGIIAGDDQLSDEARGVARIGLANYFAGALLLPYRPFLDAAASTRYDIDQLARRFEV 308 Query 313 GFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVHDAF 372 GFET+CHRLSTLQRP RG+PFIFVRTD AGNISKRQSATAFHFSRVGG+CPLWV+H AF Sbjct 309 GFETICHRLSTLQRPNARGVPFIFVRTDSAGNISKRQSATAFHFSRVGGNCPLWVIHQAF 368 Query 373 AQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVYSTGV 432 A+P + + QVAQMPD R+YFW+A+TT A+ YLGP K+FA+GLGCDLAHA KL+YS GV Sbjct 369 ARPGQFLTQVAQMPDERTYFWIARTTTAEPSRYLGPGKSFAIGLGCDLAHADKLIYSVGV 428 Query 433 VLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPY 479 L D IGAGCKIC+R SC QRAFPYLG V VD + + LPY Sbjct 429 DLTDTEAIAAIGAGCKICDRPSCPQRAFPYLGRPVRVDPHTSTDLPY 475 >gi|254773353|ref|ZP_05214869.1| hypothetical protein MaviaA2_01546 [Mycobacterium avium subsp. avium ATCC 25291] Length=477 Score = 627 bits (1618), Expect = 1e-177, Method: Compositional matrix adjust. Identities = 308/471 (66%), Positives = 372/471 (79%), Gaps = 9/471 (1%) Query 14 SRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSA 73 ++TF+GARLRRLR+E+GLTQVALA+AL LSTSYVNQLENDQRPITVPVLL LTERFDL Sbjct 5 AKTFAGARLRRLREEQGLTQVALARALGLSTSYVNQLENDQRPITVPVLLTLTERFDLPT 64 Query 74 QYFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAATEE 133 QYF+ DSDARL+ADL +V E + Q+EE VARMP +G +LV +HRRL T + Sbjct 65 QYFAPDSDARLIADLREVLA----ETPATPGQVEELVARMPAIGQTLVNLHRRLHDTTAD 120 Query 134 LEGYRSRAT---AETELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTGGL 190 LE SRA ++T P +PMPFEEVRDFFYDR NYI +LD+AAE MF + +R GGL Sbjct 121 LEALYSRANLDISDTPGLPHQPMPFEEVRDFFYDRKNYIGELDVAAEEMFDHNRLRIGGL 180 Query 191 DIQLAELMRDRFGISVVIDDN--LPDTAKRRYHPDTKVLRVAHWLMPGQRAFQIATQLAL 248 D QLA L+ ++ G++VVIDD L +KR + P++K + +A WL PGQRAFQ+ATQ+AL Sbjct 181 DDQLARLLGEQLGVAVVIDDGQLLAPNSKRLFDPESKTVYLARWLHPGQRAFQLATQIAL 240 Query 249 VGQSDLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGR 308 + Q +LI++I+A DDQLS +ARGVARIGLANYFAGA LLPYR F AAE++RYDID L R Sbjct 241 LTQPELITAIIAGDDQLSDDARGVARIGLANYFAGALLLPYRRFLDAAERVRYDIDQLSR 300 Query 309 RFGVGFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVV 368 RF VGFETVCHRLSTLQRP RG+PFIFVRTD AGNISKRQSATAFHFSRVGG+CPLWVV Sbjct 301 RFEVGFETVCHRLSTLQRPNARGVPFIFVRTDSAGNISKRQSATAFHFSRVGGNCPLWVV 360 Query 369 HDAFAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVY 428 H AF++P + + QVAQMPD R+YFW+A+TT+ YLGPHK+FA+GLGCD+ HA KL+Y Sbjct 361 HHAFSRPGQFLTQVAQMPDDRTYFWIARTTSGGPSRYLGPHKSFAIGLGCDVDHADKLIY 420 Query 429 STGVVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPY 479 S G+ L D + VPIGAGCKIC+R +C QRAFPYLG V+VD + + LPY Sbjct 421 SVGIDLRDTESIVPIGAGCKICDRPACPQRAFPYLGRPVSVDPHRSTDLPY 471 >gi|41406396|ref|NP_959232.1| hypothetical protein MAP0298 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394745|gb|AAS02615.1| hypothetical protein MAP_0298 [Mycobacterium avium subsp. paratuberculosis K-10] Length=502 Score = 626 bits (1615), Expect = 2e-177, Method: Compositional matrix adjust. Identities = 308/471 (66%), Positives = 372/471 (79%), Gaps = 9/471 (1%) Query 14 SRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSA 73 ++TF+GARLRRLR+E+GLTQVALA+AL LSTSYVNQLENDQRPITVPVLL LTERFDL Sbjct 30 AKTFAGARLRRLREEQGLTQVALARALGLSTSYVNQLENDQRPITVPVLLTLTERFDLPT 89 Query 74 QYFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAATEE 133 QYF+ DSDARL+ADL +V E + Q+EE VARMP +G +LV +HRRL T + Sbjct 90 QYFAPDSDARLIADLREVLA----ETPATPGQVEELVARMPAIGQTLVNLHRRLHDTTAD 145 Query 134 LEGYRSRAT---AETELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTGGL 190 LE SRA ++T P +PMPFEEVRDFFYDR NYI +LD+AAE MF + +R GGL Sbjct 146 LEALYSRANLDISDTPGLPHQPMPFEEVRDFFYDRKNYIGELDVAAEEMFDHNRLRIGGL 205 Query 191 DIQLAELMRDRFGISVVIDDN--LPDTAKRRYHPDTKVLRVAHWLMPGQRAFQIATQLAL 248 D QLA L+ ++ G++VVIDD L +KR + P++K + +A WL PGQRAFQ+ATQ+AL Sbjct 206 DGQLARLLGEQLGVAVVIDDGQLLAPNSKRLFDPESKTVYLARWLHPGQRAFQLATQIAL 265 Query 249 VGQSDLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGR 308 + Q +LI++I+A DDQLS +ARGVARIGLANYFAGA LLPYR F AAE++RYDID L R Sbjct 266 LTQPELITAIIAGDDQLSDDARGVARIGLANYFAGALLLPYRRFLDAAERVRYDIDQLSR 325 Query 309 RFGVGFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVV 368 RF VGFETVCHRLSTLQRP RG+PFIFVRTD AGNISKRQSATAFHFSRVGG+CPLWVV Sbjct 326 RFEVGFETVCHRLSTLQRPNARGVPFIFVRTDSAGNISKRQSATAFHFSRVGGNCPLWVV 385 Query 369 HDAFAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVY 428 H AF++P + + QVAQMPD R+YFW+A+TT+ YLGPHK+FA+GLGCD+ HA KL+Y Sbjct 386 HHAFSRPGQFLTQVAQMPDDRTYFWIARTTSGGPSRYLGPHKSFAIGLGCDVDHADKLIY 445 Query 429 STGVVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPY 479 S G+ L D + VPIGAGCKIC+R +C QRAFPYLG V+VD + + LPY Sbjct 446 SVGIDLRDTESIVPIGAGCKICDRAACPQRAFPYLGRPVSVDPHRSTDLPY 496 >gi|118464968|ref|YP_879634.1| XRE family transcriptional regulator [Mycobacterium avium 104] gi|118166255|gb|ABK67152.1| transcriptional regulator, XRE family protein [Mycobacterium avium 104] Length=474 Score = 625 bits (1613), Expect = 3e-177, Method: Compositional matrix adjust. Identities = 307/471 (66%), Positives = 372/471 (79%), Gaps = 9/471 (1%) Query 14 SRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSA 73 ++TF+GARLRRLR+E+GLTQVALA+ L LSTSYVNQLENDQRPITVPVLL LTERFDL Sbjct 2 AKTFAGARLRRLREEQGLTQVALARVLGLSTSYVNQLENDQRPITVPVLLTLTERFDLPT 61 Query 74 QYFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAATEE 133 QYF+ DSDARL+ADL +V E + Q+EE VARMP +G +LV +HRRL T + Sbjct 62 QYFAPDSDARLIADLREVLA----ETPATPGQVEELVARMPAIGQTLVNLHRRLHDTTAD 117 Query 134 LEGYRSRAT---AETELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTGGL 190 LE SRA ++T P +PMPFEEVRDFFYDR NYI +LD+AAE MF + +R GGL Sbjct 118 LEALYSRANLDISDTPGLPHQPMPFEEVRDFFYDRKNYIGELDVAAEEMFDHNRLRIGGL 177 Query 191 DIQLAELMRDRFGISVVIDDN--LPDTAKRRYHPDTKVLRVAHWLMPGQRAFQIATQLAL 248 D QLA+L+ ++ G++VVIDD L +KR + P++K + +A WL PGQRAFQ+ATQ+AL Sbjct 178 DGQLAQLLGEQLGVAVVIDDGQLLAPNSKRLFDPESKTVYLARWLHPGQRAFQLATQIAL 237 Query 249 VGQSDLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGR 308 + Q +LI++I+A DDQLS +ARGVARIGLANYFAGA LLPYR F AAE++RYDID L R Sbjct 238 LTQPELITAIIAGDDQLSDDARGVARIGLANYFAGALLLPYRRFLDAAERVRYDIDQLSR 297 Query 309 RFGVGFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVV 368 RF VGFETVCHRLSTLQRP RG+PFIFVRTD AGNISKRQSATAFHFSRVGG+CPLWVV Sbjct 298 RFEVGFETVCHRLSTLQRPNARGVPFIFVRTDSAGNISKRQSATAFHFSRVGGNCPLWVV 357 Query 369 HDAFAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVY 428 H AF++P + + QVAQMPD R+YFW+A+TT+ YLGPHK+FA+GLGCD+ HA KL+Y Sbjct 358 HHAFSRPGQFLTQVAQMPDDRTYFWIARTTSGGPSRYLGPHKSFAIGLGCDVDHADKLIY 417 Query 429 STGVVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPY 479 S G+ L D + VPIGAGCKIC+R +C QRAFPYLG V+VD + + LPY Sbjct 418 SVGIDLRDTESIVPIGAGCKICDRPACPQRAFPYLGRPVSVDPHRSTDLPY 468 >gi|336460021|gb|EGO38931.1| putative transcriptional regulator [Mycobacterium avium subsp. paratuberculosis S397] Length=474 Score = 625 bits (1613), Expect = 4e-177, Method: Compositional matrix adjust. Identities = 307/471 (66%), Positives = 371/471 (79%), Gaps = 9/471 (1%) Query 14 SRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSA 73 ++TF+GARLRRLR+E+GLTQVALA+AL LSTSYVNQLENDQRPITVPVLL LTERFDL Sbjct 2 AKTFAGARLRRLREEQGLTQVALARALGLSTSYVNQLENDQRPITVPVLLTLTERFDLPT 61 Query 74 QYFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAATEE 133 QYF+ DSDARL+ADL +V E + Q+EE VARMP +G +LV +HRRL T + Sbjct 62 QYFAPDSDARLIADLREVL----AETPATPGQVEELVARMPAIGQTLVNLHRRLHDTTAD 117 Query 134 LEGYRSRAT---AETELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTGGL 190 LE SRA ++T P +PMPFEEVRDFFYDR NYI +LD+AAE MF + +R GGL Sbjct 118 LEALYSRANLDISDTPGLPHQPMPFEEVRDFFYDRKNYIGELDVAAEEMFDHNRLRIGGL 177 Query 191 DIQLAELMRDRFGISVVIDDN--LPDTAKRRYHPDTKVLRVAHWLMPGQRAFQIATQLAL 248 D QLA L+ ++ G++VVIDD L +KR + P++K + +A WL PGQRAFQ+ATQ+AL Sbjct 178 DGQLARLLGEQLGVAVVIDDGQLLAPNSKRLFDPESKTVYLARWLHPGQRAFQLATQIAL 237 Query 249 VGQSDLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGR 308 + Q +LI++I+A DDQLS +ARGVARIGLANYFAGA LLPYR F AAE++RYDID L R Sbjct 238 LTQPELITAIIAGDDQLSDDARGVARIGLANYFAGALLLPYRRFLDAAERVRYDIDQLSR 297 Query 309 RFGVGFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVV 368 RF VGFETVCHRLSTLQRP RG+PFIFVRTD AGNISKRQSATAFHFSRVGG+CPLWVV Sbjct 298 RFEVGFETVCHRLSTLQRPNARGVPFIFVRTDSAGNISKRQSATAFHFSRVGGNCPLWVV 357 Query 369 HDAFAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVY 428 H AF++P + + QVAQMPD R+YFW+A+TT+ YLGPHK+FA+GLGCD+ HA KL+Y Sbjct 358 HHAFSRPGQFLTQVAQMPDDRTYFWIARTTSGGPSRYLGPHKSFAIGLGCDVDHADKLIY 417 Query 429 STGVVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPY 479 S G+ L D + VPIGAGCKIC+R +C QRAFPYLG +VD + + LPY Sbjct 418 SVGIDLRDTESIVPIGAGCKICDRAACPQRAFPYLGRPASVDPHRSTDLPY 468 >gi|262201756|ref|YP_003272964.1| hypothetical protein Gbro_1813 [Gordonia bronchialis DSM 43247] gi|262085103|gb|ACY21071.1| Protein of unknown function DUF2083,transcriptional regulator [Gordonia bronchialis DSM 43247] Length=474 Score = 571 bits (1471), Expect = 1e-160, Method: Compositional matrix adjust. Identities = 298/472 (64%), Positives = 354/472 (75%), Gaps = 7/472 (1%) Query 17 FSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSAQYF 76 F GARLRRLR ERGL+Q LA+ ++LSTSYVNQLENDQRPITVPVLL LT FDL A YF Sbjct 2 FIGARLRRLRDERGLSQAGLARRVELSTSYVNQLENDQRPITVPVLLTLTREFDLDADYF 61 Query 77 SSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAATEELEG 136 + D DARLVADL+DV T V+ A+I E VARMP VG +LV +HRRL AA ELE Sbjct 62 APDGDARLVADLADVLTAQPDSGEVTRAEITELVARMPAVGRTLVGMHRRLIAADTELES 121 Query 137 YRSRATAETELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTGGLDIQLAE 196 +R+R ++ +P PMPFEEVRDFFYDR NYI LD AAE +F +R GGLD+QLA+ Sbjct 122 HRARISSGG-VPATTPMPFEEVRDFFYDRKNYIDSLDEAAETLFDRHRLRIGGLDLQLAD 180 Query 197 LMRDRFGISVVIDD-----NLPDTAKRRYHPDTKVLRVAHWLMPGQRAFQIATQLALVGQ 251 L+ + FGISV ID + + KRR+ + V+ +A L GQRAFQ+ATQLAL+ Q Sbjct 181 LLAEEFGISVSIDHHADPRDAARSPKRRFDEEHGVIHLAGRLTSGQRAFQLATQLALLTQ 240 Query 252 SDLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGRRFG 311 + +I ++V D L + +ARIGLANYFAGA LLPY F RAAE +RYD++LLG FG Sbjct 241 AAIIDALVTEADNLHPSSVPLARIGLANYFAGALLLPYERFLRAAETVRYDVELLGLTFG 300 Query 312 VGFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVHDA 371 VGFETVCHRLSTLQRPR RGIPFI VRTD+AGNISKRQSATAFHFSRVGGSCPLWVVHDA Sbjct 301 VGFETVCHRLSTLQRPRNRGIPFILVRTDRAGNISKRQSATAFHFSRVGGSCPLWVVHDA 360 Query 372 FAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVYSTG 431 FA P RIV QV+QMPDGRSYFW+A+TT D G+L P K+FA+GLGCD+AHA +L+Y++G Sbjct 361 FATPGRIVTQVSQMPDGRSYFWLARTT-DDHHGFLSPRKSFAIGLGCDVAHAQRLIYASG 419 Query 432 VVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPYSSTE 483 V L D ST VPIGAGCK+C+R C QRAFP LG + VD S+PY ++ Sbjct 420 VDLSDDSTVVPIGAGCKVCSRPECPQRAFPQLGHPIHVDAAVSDSVPYRHSD 471 >gi|226308519|ref|YP_002768479.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|226187636|dbj|BAH35740.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis PR4] Length=473 Score = 569 bits (1466), Expect = 5e-160, Method: Compositional matrix adjust. Identities = 291/468 (63%), Positives = 361/468 (78%), Gaps = 3/468 (0%) Query 15 RTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSAQ 74 + ++GARLRRLR+ER L+Q ALAKAL+LS SYVNQLENDQRP+TVPVLL L FDL Q Sbjct 3 KMYAGARLRRLREERNLSQSALAKALELSPSYVNQLENDQRPLTVPVLLKLNAEFDLDVQ 62 Query 75 YFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAATEEL 134 +F+SDSDARLVAD+ + VS A+++E VARMP VG +LV +HRRL AATE+L Sbjct 63 FFASDSDARLVADVHHALAETSESGEVSLAEVDELVARMPAVGRTLVMLHRRLHAATEQL 122 Query 135 EGYRSRATAETELPPAR-PMPFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTGGLDIQ 193 + + ++ + E + PMP+EEVRDFFYDR N+I LD AAE+MF ++G+ G +D+Q Sbjct 123 DQFSTQLSGEAASDVSLVPMPYEEVRDFFYDRKNHIAVLDDAAEQMFVDNGLSVGAVDLQ 182 Query 194 LAELMRDRFGISVVIDDNLPDT--AKRRYHPDTKVLRVAHWLMPGQRAFQIATQLALVGQ 251 LA L+RD+ G++V I + PD KR Y PD VL +A L GQRAFQIA QLA Q Sbjct 183 LARLLRDQHGVTVTIRTDEPDKLGPKRFYDPDKSVLTLARRLSAGQRAFQIAMQLAFFTQ 242 Query 252 SDLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGRRFG 311 +D+I S+VA D+ LS E+ +ARIGLA+YFAGA LLPY +F +AE LRYDIDLL +F Sbjct 243 ADVIDSLVAEDESLSAESAALARIGLAHYFAGALLLPYTQFLESAEALRYDIDLLSLKFE 302 Query 312 VGFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVHDA 371 VGFETVCHRLSTLQR QRGIPF FVRTD+AGNISKRQSATAFHFSRVGGSCPLWV+H+A Sbjct 303 VGFETVCHRLSTLQRHGQRGIPFFFVRTDRAGNISKRQSATAFHFSRVGGSCPLWVIHEA 362 Query 372 FAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVYSTG 431 FA P RI+ QVA+MPDGR+Y WVA+TT + GLGYL P +NFAVGLGCD+ +A ++VYS G Sbjct 363 FASPGRILTQVAKMPDGRTYLWVARTTHSGGLGYLAPERNFAVGLGCDIGYADRMVYSHG 422 Query 432 VVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPY 479 + DDP+T VPIGAGCK+C+R +C+QRAFP LG ++V +N+ S LPY Sbjct 423 IQTDDPATIVPIGAGCKVCDRPACSQRAFPQLGRSISVSQNSSSHLPY 470 >gi|229488531|ref|ZP_04382397.1| DNA-binding protein [Rhodococcus erythropolis SK121] gi|229324035|gb|EEN89790.1| DNA-binding protein [Rhodococcus erythropolis SK121] Length=473 Score = 566 bits (1460), Expect = 2e-159, Method: Compositional matrix adjust. Identities = 292/472 (62%), Positives = 363/472 (77%), Gaps = 11/472 (2%) Query 15 RTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSAQ 74 + ++GARLRRLR+ER L+Q ALAKAL+LS SYVNQLENDQRP+TVPVLL L FDL Q Sbjct 3 KMYAGARLRRLREERNLSQSALAKALELSPSYVNQLENDQRPLTVPVLLKLNAEFDLDVQ 62 Query 75 YFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAATEEL 134 +F+SDSDARLVAD+ + VS A+++E VARMP VG +LV +HRRL AATE+L Sbjct 63 FFASDSDARLVADVHHALAETSESGDVSLAEVDELVARMPAVGRTLVMLHRRLHAATEQL 122 Query 135 EGYRSRATAETELPPAR-----PMPFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTGG 189 + + ++ + E PA PMP+EEVRDFFYDR N+I LD AAE+MF ++G+ G Sbjct 123 DQFSTQLSGE----PASDVSLVPMPYEEVRDFFYDRKNHIAVLDDAAEQMFLDNGLSVGA 178 Query 190 LDIQLAELMRDRFGISVVIDDNLPDT--AKRRYHPDTKVLRVAHWLMPGQRAFQIATQLA 247 +D+QLA L+RD+ G++V I + PD KR Y P+ VL +A L GQRAFQIA QLA Sbjct 179 VDLQLARLLRDQHGVTVTIRTDEPDKLGPKRYYDPNKSVLTLARRLSAGQRAFQIAMQLA 238 Query 248 LVGQSDLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLG 307 Q+D+I S+VA D+ LS E+ +AR+GLA+YFAGA LLPY +F ++AE LRYDIDLL Sbjct 239 FFTQADVIDSLVAEDESLSAESAALARVGLAHYFAGALLLPYTQFLQSAEALRYDIDLLS 298 Query 308 RRFGVGFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWV 367 +F VGFETVCHRLSTLQR QRGIPF FVRTD+AGNISKRQSATAFHFSRVGGSCPLWV Sbjct 299 LKFEVGFETVCHRLSTLQRHGQRGIPFFFVRTDRAGNISKRQSATAFHFSRVGGSCPLWV 358 Query 368 VHDAFAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLV 427 +H+AFA P RI+ QVA+MPDGR+Y WVA+TT + GLGYL P +NFAVGLGCD+ +A ++V Sbjct 359 IHEAFASPGRILTQVAKMPDGRTYLWVARTTHSGGLGYLAPERNFAVGLGCDIGYADRMV 418 Query 428 YSTGVVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPY 479 YS G+ DDP+T VPIGAGCK+C+R +C+QRAFP LG ++V EN+ S LPY Sbjct 419 YSHGIQTDDPATIVPIGAGCKVCDRPACSQRAFPQLGRSISVSENSSSHLPY 470 >gi|325674642|ref|ZP_08154329.1| DNA-binding protein [Rhodococcus equi ATCC 33707] gi|325554228|gb|EGD23903.1| DNA-binding protein [Rhodococcus equi ATCC 33707] Length=482 Score = 552 bits (1423), Expect = 4e-155, Method: Compositional matrix adjust. Identities = 288/467 (62%), Positives = 343/467 (74%), Gaps = 3/467 (0%) Query 15 RTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSAQ 74 + + G RLRRLR+ERGLTQ+ALA+ LDLS SYVNQLENDQRP+TVPVLL L FDL A Sbjct 13 KIYGGPRLRRLREERGLTQLALARILDLSASYVNQLENDQRPLTVPVLLKLNTTFDLDAH 72 Query 75 YFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAATEEL 134 +F+++SDARL ADL DV T +G A S + IEEFVARMPE+GH+LV VHRRL+AATE+L Sbjct 73 FFAAESDARLAADLQDVLTTLGTP-APSASTIEEFVARMPEIGHALVGVHRRLQAATEQL 131 Query 135 EGYRSRATAETELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTGGLDIQL 194 E + + T PMPFEEVRDFFYDR+N+I LD AAE++F E G+R G LD QL Sbjct 132 EQFSAHLATPTAAGDGVPMPFEEVRDFFYDRHNHIAQLDDAAEQLFVEGGLRIGSLDTQL 191 Query 195 AELMRDRFGISVVIDDNLPD--TAKRRYHPDTKVLRVAHWLMPGQRAFQIATQLALVGQS 252 L+ I V + + P KR Y ++L ++ L PGQRAFQIATQLA + QS Sbjct 192 TALLESEHDIVVRLRTDPPHRPGPKRVYDATNRILTLSRHLSPGQRAFQIATQLAFLTQS 251 Query 253 DLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGRRFGV 312 +I + LS AR +A+IGLANYFAGA LLPY +F AAE L YDI++L +F V Sbjct 252 AVIERQLEAATGLSENARELAKIGLANYFAGALLLPYTQFLDAAEHLHYDIEMLALQFEV 311 Query 313 GFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVHDAF 372 GFETVCHRLSTLQRP +RG+PF FVRTD+AGNISKRQSATAFHFSRVGGSCPLWVVHDAF Sbjct 312 GFETVCHRLSTLQRPNRRGVPFFFVRTDRAGNISKRQSATAFHFSRVGGSCPLWVVHDAF 371 Query 373 AQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVYSTGV 432 P RIV QVAQMPDGR+Y W+A+TT Y P ++FAVGLGCD+ HA +LVYS G+ Sbjct 372 GTPGRIVTQVAQMPDGRTYLWIARTTDDGARPYGTPDRSFAVGLGCDITHADRLVYSRGL 431 Query 433 VLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPY 479 LD+ + VPIGAGCKIC RT+CAQRAFP +G V VD + S LPY Sbjct 432 RLDEQVSPVPIGAGCKICERTNCAQRAFPQIGRPVRVDVDFSSRLPY 478 >gi|312138366|ref|YP_004005702.1| transcriptional regulator [Rhodococcus equi 103S] gi|311887705|emb|CBH47017.1| putative transcriptional regulator [Rhodococcus equi 103S] Length=503 Score = 548 bits (1413), Expect = 6e-154, Method: Compositional matrix adjust. Identities = 287/467 (62%), Positives = 342/467 (74%), Gaps = 3/467 (0%) Query 15 RTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSAQ 74 + + G RLRRLR+ERGLTQ+ALA+ LDLS SYVNQLENDQRP+TVPVLL L FDL A Sbjct 34 KIYGGPRLRRLREERGLTQLALARILDLSASYVNQLENDQRPLTVPVLLKLNTTFDLDAH 93 Query 75 YFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAATEEL 134 +F+++SDARL ADL DV T +G A S + IEEFVARMPE+GH+LV VHRRL+AATE+L Sbjct 94 FFAAESDARLAADLQDVLTTLGTP-APSASTIEEFVARMPEIGHALVGVHRRLQAATEQL 152 Query 135 EGYRSRATAETELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTGGLDIQL 194 E + + T PMPFEEVRDFFYD +N+I LD AAE++F E G+R G LD QL Sbjct 153 EQFSAHLATPTAAGDGVPMPFEEVRDFFYDSHNHIAQLDDAAEQLFVEGGLRIGSLDTQL 212 Query 195 AELMRDRFGISVVIDDNLPD--TAKRRYHPDTKVLRVAHWLMPGQRAFQIATQLALVGQS 252 L+ I V + + P KR Y ++L ++ L PGQRAFQIATQLA + QS Sbjct 213 TALLESEHDIVVRLRTDPPHRPGPKRVYDATNRILTLSRQLSPGQRAFQIATQLAFLTQS 272 Query 253 DLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGRRFGV 312 +I + LS AR +A+IGLANYFAGA LLPY +F AAE L YDI++L +F V Sbjct 273 AVIERQLEAATGLSENARELAKIGLANYFAGALLLPYTQFLDAAEHLHYDIEMLALQFEV 332 Query 313 GFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVHDAF 372 GFETVCHRLSTLQRP +RG+PF FVRTD+AGNISKRQSATAFHFSRVGGSCPLWVVHDAF Sbjct 333 GFETVCHRLSTLQRPNRRGVPFFFVRTDRAGNISKRQSATAFHFSRVGGSCPLWVVHDAF 392 Query 373 AQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVYSTGV 432 P RIV QVAQMPDGR+Y W+A+TT Y P ++FAVGLGCD+ HA +LVYS G+ Sbjct 393 GTPGRIVTQVAQMPDGRTYLWIARTTDDGARPYGTPDRSFAVGLGCDITHADRLVYSRGL 452 Query 433 VLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPY 479 LD+ + VPIGAGCKIC RT+CAQRAFP +G V VD + S LPY Sbjct 453 RLDEQVSPVPIGAGCKICERTNCAQRAFPQIGRPVRVDVDFSSRLPY 499 >gi|226362462|ref|YP_002780240.1| Xre family DNA-binding protein [Rhodococcus opacus B4] gi|226240947|dbj|BAH51295.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] Length=473 Score = 541 bits (1393), Expect = 1e-151, Method: Compositional matrix adjust. Identities = 265/451 (59%), Positives = 329/451 (73%), Gaps = 3/451 (0%) Query 32 TQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSAQYFSSDSDARLVADLSDV 91 TQ ALAK L LSTSYVNQLENDQRP+TVPVLL L DL +F++D+DARL+ADL +V Sbjct 20 TQSALAKTLGLSTSYVNQLENDQRPLTVPVLLRLNADLDLDMSFFAADTDARLLADLQEV 79 Query 92 FTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAATEELEGYRSRATAETELPPAR 151 F + +S I+E ++R+P LV +HRRLR AT +LE + S T P+ Sbjct 80 FGENPEAADLSTTDIDELISRVPAAARVLVGLHRRLRGATAQLEQF-STGVDGTLADPST 138 Query 152 PMPFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTGGLDIQLAELMRDRFGISVVIDDN 211 MP+E+VRDFFYD+ N+I +LD+AAE +FT + GG+D+QL+ L+ D I+V I + Sbjct 139 AMPYEDVRDFFYDQRNHIPELDIAAENLFTSRDLTLGGMDLQLSRLLHDEHDITVTIRTD 198 Query 212 LPD--TAKRRYHPDTKVLRVAHWLMPGQRAFQIATQLALVGQSDLISSIVATDDQLSTEA 269 PD KR + P T+VL +A L PGQRAFQ+ATQLA + Q++ I IV + L ++ Sbjct 199 DPDRPGPKRTFDPQTRVLTLARRLAPGQRAFQLATQLAFLTQAETIDRIVTRTESLPAQS 258 Query 270 RGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGRRFGVGFETVCHRLSTLQRPRQ 329 R +ARIGLANYFAGA +LPY F +AE LRYDIDLL +F VGFET+CHRLSTLQR Q Sbjct 259 RDLARIGLANYFAGALILPYTPFLASAEALRYDIDLLSMKFEVGFETICHRLSTLQRRGQ 318 Query 330 RGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVHDAFAQPERIVRQVAQMPDGR 389 RG+PF FVRTD+AGNISKRQSATAFHFSRVGGSCPLWVVHDAFA P RI Q+AQMPDGR Sbjct 319 RGVPFFFVRTDRAGNISKRQSATAFHFSRVGGSCPLWVVHDAFATPGRIRTQIAQMPDGR 378 Query 390 SYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVYSTGVVLDDPSTEVPIGAGCKI 449 SY W+A+TT GYL ++FA+GLGCDL +A KLVYS G+ +DDPST VPIG GCK+ Sbjct 379 SYLWLARTTDESTPGYLAQKRDFAIGLGCDLTYASKLVYSHGLQIDDPSTAVPIGPGCKV 438 Query 450 CNRTSCAQRAFPYLGGRVAVDENAGSSLPYS 480 C R CAQRAFP LG + VDEN+ +++PY+ Sbjct 439 CERAGCAQRAFPQLGRTINVDENSAATIPYT 469 >gi|54026164|ref|YP_120406.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] gi|54017672|dbj|BAD59042.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] Length=473 Score = 527 bits (1357), Expect = 2e-147, Method: Compositional matrix adjust. Identities = 267/467 (58%), Positives = 337/467 (73%), Gaps = 3/467 (0%) Query 15 RTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSAQ 74 + ++GARLRRLR+ER +TQ ALAK+LDLS SY+NQLE DQRP+T+PVLL L FDL Q Sbjct 3 KMYAGARLRRLREERRMTQAALAKSLDLSPSYLNQLERDQRPLTIPVLLKLNSTFDLDVQ 62 Query 75 YFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAATEEL 134 +F++DSDARLV+DL DV D + ++EE R PEV LVA+HRRLRAAT++L Sbjct 63 FFAADSDARLVSDLHDVLVDAAGGDSAPLTEVEELATRQPEVARILVAMHRRLRAATDQL 122 Query 135 EGYRSRATAETELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTGGLDIQL 194 + +R A P PMP+E+VRDFFYD +N+I LD AAE+MF E G+ G LD QL Sbjct 123 DLLSAR-VATPAGAPGVPMPYEDVRDFFYDHHNHIPQLDHAAEQMFEECGLTIGSLDRQL 181 Query 195 AELMRDRFGISVVI--DDNLPDTAKRRYHPDTKVLRVAHWLMPGQRAFQIATQLALVGQS 252 A + +R G++V++ D P KR Y P+++ L +A L PGQRAFQIA L + Sbjct 182 ARVAEERAGVTVLVRGDGADPAIPKRHYDPESRTLTLARRLRPGQRAFQIAATLGFLLHG 241 Query 253 DLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGRRFGV 312 D + +++A L+ E+R +AR+GL NYFA A +LPY F R+AE+LRYDIDLL RF V Sbjct 242 DQLDAVLAETPSLTGESRALARVGLGNYFAAALILPYGRFLRSAEELRYDIDLLSLRFEV 301 Query 313 GFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVHDAF 372 GFETVCHRLSTLQR QRG+PF VRTD+AGNISKRQSATAFHFSRVGGSCPLWVVH+AF Sbjct 302 GFETVCHRLSTLQRQGQRGVPFFLVRTDRAGNISKRQSATAFHFSRVGGSCPLWVVHEAF 361 Query 373 AQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVYSTGV 432 AQP RI+ QVA MPDGR Y W+A+TTA G+ + FA+GLGCD+ +A +LVYS G+ Sbjct 362 AQPGRILTQVAAMPDGRRYLWIARTTAPAPRGFGDATREFAIGLGCDIEYADRLVYSAGL 421 Query 433 VLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPY 479 +DDP+ VPIGAGCK+C R +C QRAFP +G + V E+ + LPY Sbjct 422 PVDDPAAAVPIGAGCKVCERPACPQRAFPQIGSPLTVSEHTSTDLPY 468 >gi|83593651|ref|YP_427403.1| XRE family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83576565|gb|ABC23116.1| transcriptional regulator, XRE family [Rhodospirillum rubrum ATCC 11170] Length=474 Score = 522 bits (1345), Expect = 5e-146, Method: Compositional matrix adjust. Identities = 257/474 (55%), Positives = 333/474 (71%), Gaps = 8/474 (1%) Query 15 RTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSAQ 74 + F G RL+RLR+ERGLTQ ALA+ L++S SY+NQ+E +QRP+TVPVLL + F + Q Sbjct 3 KAFMGMRLQRLREERGLTQAALARTLEISPSYLNQMERNQRPLTVPVLLRINAAFGVDVQ 62 Query 75 YFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAATEEL 134 FS D +ARL+ADL + ++ G ++ ++I+ A MP +GH+L+ +HRR R ATE L Sbjct 63 LFSEDEEARLIADLRETLSESGTGDTITLSEIKGLAADMPMIGHALITLHRRARGATERL 122 Query 135 EGYRSRATAETE----LPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTGGL 190 E + E PP PMP+EEVRDFFYDR+N++ +LD AAER+F ++ + G + Sbjct 123 EAMAASLGVPAESLGVAPP--PMPYEEVRDFFYDRHNHVAELDEAAERLFLDADLGIGAM 180 Query 191 DIQLAELMRDRFGISVVID--DNLPDTAKRRYHPDTKVLRVAHWLMPGQRAFQIATQLAL 248 DI L L+RDR GI VVI D++ RR+ D +VL ++ L GQRAFQ+ATQLA Sbjct 181 DISLERLLRDRHGIRVVIQGRDDMAGNEHRRFDGDQRVLYLSRALEAGQRAFQMATQLAF 240 Query 249 VGQSDLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGR 308 + S L+ ++V + S EAR +ARIGLANY+AGA +LPY EF AAE+LRYD+DLLG Sbjct 241 LDHSALLDALVGSPRLASAEARALARIGLANYYAGALILPYGEFLSAAERLRYDVDLLGE 300 Query 309 RFGVGFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVV 368 FGVG ET+CHRLSTLQR RG+PF F+R D+AGNISKRQSAT FHFSRVGG+CPLW V Sbjct 301 MFGVGVETICHRLSTLQRSGARGVPFFFIRVDRAGNISKRQSATDFHFSRVGGTCPLWNV 360 Query 369 HDAFAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVY 428 + AFA P R++ Q+AQMPDGR+Y WVA+T + G+ P K FA+GLGCDL HA +LVY Sbjct 361 YAAFASPGRVLTQIAQMPDGRTYLWVARTVCHNRGGFGVPGKTFAIGLGCDLRHADRLVY 420 Query 429 STGVVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPYSST 482 + G+ L D ST PIGAGCK+C R +C QRAFP LG + VDE PY +T Sbjct 421 ARGLNLSDASTATPIGAGCKVCERPACPQRAFPPLGKGLIVDERRSLFEPYRAT 474 >gi|326381997|ref|ZP_08203690.1| hypothetical protein SCNU_03597 [Gordonia neofelifaecis NRRL B-59395] gi|326199423|gb|EGD56604.1| hypothetical protein SCNU_03597 [Gordonia neofelifaecis NRRL B-59395] Length=433 Score = 512 bits (1318), Expect = 6e-143, Method: Compositional matrix adjust. Identities = 256/434 (59%), Positives = 318/434 (74%), Gaps = 5/434 (1%) Query 47 VNQLENDQRPITVPVLLLLTERFDLSAQYFSSDSDARLVADLSDVFTDIGVEHAVSGAQI 106 +NQLEND+RPITVPVLL +T FDL+ +FS DARL ADL+DV + G V+ A++ Sbjct 1 MNQLENDRRPITVPVLLTITATFDLAPDFFSVSGDARLTADLADVILEQG--EKVTRAEV 58 Query 107 EEFVARMPEVGHSLVAVHRRLRAATEELEGYRSRATAETELPPARPMPFEEVRDFFYDRN 166 E VARMP VG++LV +HRRL AAT+ELE R + + P PFE+VRD+FYDR Sbjct 59 SELVARMPAVGNALVGLHRRLAAATDELETLRHLSGGDASDPHV--TPFEQVRDYFYDRR 116 Query 167 NYIHDLDMAAERMFTESGMRTGGLDIQLAELMRDRFGISVVIDDNLPDTA-KRRYHPDTK 225 N+I +LD+AAER+F ++G+ GGLD+QLA+++ + FGI V I + KR Y + Sbjct 117 NHIAELDLAAERLFVDAGLSVGGLDLQLADVLAENFGIRVRIAPAAHHSGPKRVYDEGSA 176 Query 226 VLRVAHWLMPGQRAFQIATQLALVGQSDLISSIVATDDQLSTEARGVARIGLANYFAGAF 285 + +A L GQRAFQ+ATQLAL Q I +VA D L+ + VAR+GLANYFAGA Sbjct 177 TVTLARHLSAGQRAFQLATQLALASQRLEIDRLVAAADGLNAASIPVARVGLANYFAGAL 236 Query 286 LLPYREFHRAAEQLRYDIDLLGRRFGVGFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNI 345 +LPY +F AA ++RYDIDLL RRF VGFETVCHRLSTLQRP RG+PFIFVR DKAGNI Sbjct 237 VLPYTQFASAAREMRYDIDLLSRRFEVGFETVCHRLSTLQRPGDRGVPFIFVRVDKAGNI 296 Query 346 SKRQSATAFHFSRVGGSCPLWVVHDAFAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGY 405 SKRQSATAFHFSRVGGSCPLWVVHDAF+ P RI QV++MPDGRSYFW+A+T + G+ Sbjct 297 SKRQSATAFHFSRVGGSCPLWVVHDAFSTPGRIRTQVSEMPDGRSYFWLARTIDSRTSGH 356 Query 406 LGPHKNFAVGLGCDLAHAHKLVYSTGVVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGG 465 L P +FA+GLGCDLAHA +LVY+TG+ L + T VPIGAGCK+C R +CAQRAFP LG Sbjct 357 LAPPSDFAIGLGCDLAHADELVYATGIDLAEQRTVVPIGAGCKVCPRPTCAQRAFPMLGK 416 Query 466 RVAVDENAGSSLPY 479 + +DE S+PY Sbjct 417 GIHIDERVSDSVPY 430 >gi|319793072|ref|YP_004154712.1| XRE family transcriptional regulator [Variovorax paradoxus EPS] gi|315595535|gb|ADU36601.1| transcriptional regulator, XRE family [Variovorax paradoxus EPS] Length=503 Score = 501 bits (1291), Expect = 8e-140, Method: Compositional matrix adjust. Identities = 249/472 (53%), Positives = 323/472 (69%), Gaps = 4/472 (0%) Query 14 SRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSA 73 +TF G RLR LR+ERGL+Q+ALA+ L LS SY+NQ+E +QRP+TVPVLL L + Sbjct 2 KKTFMGVRLRSLREERGLSQLALAQQLGLSPSYLNQIEQNQRPLTVPVLLRLHATLGVDI 61 Query 74 QYFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAATEE 133 Q FS D +ARLVA L + D AV+ A++ E +MP VG +LVA+H+R R A E Sbjct 62 QAFSEDEEARLVASLREALADNPGGDAVALAELREVATQMPAVGRALVALHQRHRDAMER 121 Query 134 LEGYRSRATAE----TELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTGG 189 LE +P ARPMPFEEVRDFF+ N+I LD AAE + +R G Sbjct 122 LEALAGELGDGRGDLARMPQARPMPFEEVRDFFFAHQNHIAPLDNAAEAFSVQWRLREGN 181 Query 190 LDIQLAELMRDRFGISVVIDDNLPDTAKRRYHPDTKVLRVAHWLMPGQRAFQIATQLALV 249 +LA+ + + G+ V+ ++ A+RR+ P T+VLR++ +L PGQ AFQ+ATQLA + Sbjct 182 PGDRLAQRLLETHGVQVIPAEDDEGGAQRRFDPATRVLRLSRYLEPGQHAFQLATQLAFL 241 Query 250 GQSDLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGRR 309 DLI +V S AR +ARIGLANYFA A LLPY F AAEQLRYDID L RR Sbjct 242 EVGDLIDKLVTEAPLSSDTARSLARIGLANYFAAALLLPYGVFLEAAEQLRYDIDQLARR 301 Query 310 FGVGFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVH 369 FGVGFET+CHRLS+LQRP RG+PF +R D+AGNISKRQSAT FHFS+ GG+CPLW V+ Sbjct 302 FGVGFETICHRLSSLQRPEARGVPFFLIRVDRAGNISKRQSATHFHFSKTGGTCPLWNVY 361 Query 370 DAFAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVYS 429 +AFAQP R++ Q+A+MPDGR+Y W+A+T + GY P+K F++GLGCD++HA +LVYS Sbjct 362 EAFAQPGRVLTQLARMPDGRAYLWIARTVSHGFRGYGSPNKTFSIGLGCDISHATRLVYS 421 Query 430 TGVVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPYSS 481 G+ L DP PIGAGCK+C R +C QRAFP++G + VDEN +PY++ Sbjct 422 KGMDLRDPEVPTPIGAGCKVCERETCPQRAFPFVGRPLDVDENQSRFMPYAA 473 >gi|300023570|ref|YP_003756181.1| XRE family transcriptional regulator [Hyphomicrobium denitrificans ATCC 51888] gi|299525391|gb|ADJ23860.1| transcriptional regulator, XRE family [Hyphomicrobium denitrificans ATCC 51888] Length=472 Score = 498 bits (1282), Expect = 8e-139, Method: Compositional matrix adjust. Identities = 249/469 (54%), Positives = 325/469 (70%), Gaps = 6/469 (1%) Query 15 RTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSAQ 74 + F G RL+RLR+ERGLTQVALA+AL+LS SY+NQ+E +QRP+TVP+LL + F + Q Sbjct 3 KAFMGVRLKRLREERGLTQVALARALELSPSYLNQIEKNQRPLTVPILLKINSVFGVDVQ 62 Query 75 YFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAATEEL 134 FS D +ARL+ADL DV D G+ V+ +I E A MP VG ++VA+ R R A+E Sbjct 63 LFSEDEEARLIADLKDVLADPGLGEHVALTEIREIAANMPAVGRAIVALQARSRQASERA 122 Query 135 EGYRSR-ATAETELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTGGLDIQ 193 + SR + E+ PA MP+E+VRD+FY +NYI +LD AAE +F ++ + G + Sbjct 123 DAMASRFGLSAEEIEPATLMPYEKVRDYFYAHHNYIAELDEAAEALFDKAQLVIGDVATG 182 Query 194 LAELMRDRFGISVVI---DDNLPDTAKRRYHPDTKVLRVAHWLMPGQRAFQIATQLALVG 250 L E +R G+ +VI D L + +RR++ + L ++ L PGQ+AF++ATQLA + Sbjct 183 LREYLRSEHGVDIVIVPATDTL--SPQRRFNRARRTLELSANLNPGQQAFEMATQLAFLD 240 Query 251 QSDLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGRRF 310 D + + S E +ARIGLAN+FAGA ++PY F AAE LRYDIDLLG+RF Sbjct 241 IGDTLDRLAKDAADDSDETFRLARIGLANHFAGALVMPYTPFLEAAEALRYDIDLLGQRF 300 Query 311 GVGFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVHD 370 GVGFETVCHRLSTLQR RG+PF FVR D+AGNISKRQSAT FHFSRVGGSCPLW V++ Sbjct 301 GVGFETVCHRLSTLQRSESRGVPFFFVRVDRAGNISKRQSATDFHFSRVGGSCPLWNVYE 360 Query 371 AFAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVYST 430 AF+ P RI+ Q+AQMPDGR+Y WVA+T + G+ P K FA+GLGCDL+HA++LVY+ Sbjct 361 AFSTPGRILTQLAQMPDGRTYLWVARTVSRGHGGFGAPVKTFAIGLGCDLSHANRLVYAK 420 Query 431 GVVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPY 479 G+ L + VPIG GCK+C R +C QRAFP +GGR AVDEN PY Sbjct 421 GLNLANSGVAVPIGVGCKVCERPNCPQRAFPPIGGRTAVDENERRFTPY 469 >gi|257056813|ref|YP_003134645.1| putative transcriptional regulator [Saccharomonospora viridis DSM 43017] gi|256586685|gb|ACU97818.1| predicted transcriptional regulator [Saccharomonospora viridis DSM 43017] Length=475 Score = 496 bits (1277), Expect = 3e-138, Method: Compositional matrix adjust. Identities = 237/473 (51%), Positives = 327/473 (70%), Gaps = 1/473 (0%) Query 14 SRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSA 73 S+TF+GARLR LR+ R ++Q LA+ L++S SY+NQ+E++ RP+TVPVLL +TE F + A Sbjct 2 SKTFAGARLRHLRESRSMSQAELARLLEISPSYLNQIEHNTRPLTVPVLLRITEAFGVDA 61 Query 74 QYFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAATEE 133 ++F+++ +RLVAD+ + D V VS +I + +P V +LV +HR R A E Sbjct 62 EFFANNDTSRLVADVREALLDESVNADVSPGEINDLAKNLPSVAQALVKLHRNYRNAIEA 121 Query 134 LEGYRSRATAETELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTGGLDIQ 193 + T PA P+P EEVRDFFY+R NY+ +LD AE+M+ E G+R + Sbjct 122 TAALVTEDGRGTHGSPAAPLPHEEVRDFFYERENYVAELDERAEKMYEELGLRRDEIRNG 181 Query 194 LAELMRDRFGISVVIDD-NLPDTAKRRYHPDTKVLRVAHWLMPGQRAFQIATQLALVGQS 252 L + + + +G++V + NL + RY PD KVLR+A L GQ+AF++A+Q+AL+ Sbjct 182 LRDRLAEHYGVTVTTEGLNLAAGEQHRYEPDAKVLRLAPTLRIGQQAFRMASQIALLEYD 241 Query 253 DLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGRRFGV 312 DLI+ + + AR +AR+GLANYFAGA +LPY+ F AAE+ RYDI+LL FGV Sbjct 242 DLITELADSWAFSGPPARSLARVGLANYFAGALILPYKAFLSAAERFRYDIELLCEHFGV 301 Query 313 GFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVHDAF 372 GFETVCHRLSTLQRP+ RGIPF FVR D+AGN+SKRQSA FHFSRVGG+CPLWV+++AF Sbjct 302 GFETVCHRLSTLQRPKMRGIPFSFVRVDRAGNMSKRQSAAGFHFSRVGGACPLWVIYEAF 361 Query 373 AQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVYSTGV 432 +P +I+ QV +PDG+SYFW+A+T + + GY P K F+VGLGC+L HAH+LVYS G+ Sbjct 362 TRPGKILPQVVTLPDGKSYFWIARTVSRNIGGYGSPGKMFSVGLGCELRHAHRLVYSAGL 421 Query 433 VLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPYSSTEQS 485 LDD S PIG GCK+C R +C QRAFP +G + VDEN + +PY + ++ Sbjct 422 NLDDKSAATPIGMGCKVCERPACPQRAFPTIGKELTVDENTSTFVPYPAVPKT 474 >gi|148557685|ref|YP_001265267.1| XRE family transcriptional regulator [Sphingomonas wittichii RW1] gi|148502875|gb|ABQ71129.1| transcriptional regulator, XRE family [Sphingomonas wittichii RW1] Length=490 Score = 486 bits (1251), Expect = 4e-135, Method: Compositional matrix adjust. Identities = 248/470 (53%), Positives = 322/470 (69%), Gaps = 6/470 (1%) Query 11 RTYSRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFD 70 R + + G RL+RLR+ER L QV LA AL +S+SY+NQLE +QRP+TVPVLL + F Sbjct 23 RAMRKAYMGVRLKRLREERNLKQVELANALGISSSYLNQLEQNQRPLTVPVLLKINAAFG 82 Query 71 LSAQYFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAA 130 + Q FS D +ARL+ +L D + G E +VS A+I E MP VG +LV++HRR R + Sbjct 83 IDVQLFSEDEEARLITELRDALAE-GSE-SVSIAEIRELAMNMPAVGRTLVSLHRRYRES 140 Query 131 TEELEGYRSRATAE-TELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTGG 189 E E ++ + PAR MPFE+VRDFFY R+N++ LD AAER++ ++ + Sbjct 141 VERGEAMAAQLGDDWIAGGPAR-MPFEQVRDFFYARHNHVEPLDEAAERLYRQANLGPRS 199 Query 190 LDIQLAELMRDRFGISVVIDDNLPDTAKRRYHPDTKVLRVAHWLMPGQRAFQIATQLALV 249 + L +R+R G+ +V D+ A+R Y P ++L ++ L GQ+AFQ+ATQLA + Sbjct 200 VHQGLVAWLRERHGVQIVWDEG--GDAQRHYDPVRRILHLSADLRQGQQAFQMATQLAFL 257 Query 250 GQSDLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGRR 309 D+I + + EAR +AR+GLANYFAGA +LPY +F AAE YDI LGRR Sbjct 258 ELGDVIGRLSDSSILTGDEARRLARVGLANYFAGALILPYGDFLAAAEAEGYDIAKLGRR 317 Query 310 FGVGFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVH 369 FGVGFET+CHRLSTLQRP RG+PF FVR D+AGNISKRQSAT FHFSRVGGSCPLW V+ Sbjct 318 FGVGFETICHRLSTLQRPEARGVPFFFVRVDRAGNISKRQSATDFHFSRVGGSCPLWNVY 377 Query 370 DAFAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVYS 429 +AFAQP R++ Q+AQMPDGRSY W+A+T GY P K+FAVGLGCD+ HA +LVYS Sbjct 378 EAFAQPGRLLTQIAQMPDGRSYLWIARTVDRGSAGYGMPGKSFAVGLGCDIRHAGRLVYS 437 Query 430 TGVVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPY 479 G+ L DP+ PIGAGCK+C R +C QRAFP +G VA+DEN + PY Sbjct 438 RGLDLTDPAAATPIGAGCKVCERPACPQRAFPPIGRPVAIDENRSAPTPY 487 >gi|192291025|ref|YP_001991630.1| XRE family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|192284774|gb|ACF01155.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris TIE-1] Length=474 Score = 485 bits (1248), Expect = 8e-135, Method: Compositional matrix adjust. Identities = 244/473 (52%), Positives = 318/473 (68%), Gaps = 4/473 (0%) Query 14 SRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSA 73 + + GARLRRLR++RG+TQ ALA A+ +S SY+NQ+EN+QRP+TVPVLL L + Sbjct 2 KKAYVGARLRRLREQRGMTQQALATAVGVSPSYLNQIENNQRPLTVPVLLKLNATLGIDV 61 Query 74 QYFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAATEE 133 Q FS D +ARL+ADL +V +D V +++ + E V MP G +LVA++RR A E+ Sbjct 62 QLFSEDDEARLIADLKEVLSDPMVGESLTANDVRELVTSMPAAGRALVAIYRRYHLALEQ 121 Query 134 LEGYRSRATAETELPPARPM--PFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTGGLD 191 +R + + P M PFEEVRDFFY R+NYI +LD AAER +G + Sbjct 122 SAALAARLGDDRQDRPTSAMSTPFEEVRDFFYARHNYIAELDEAAERTAAGTGRTIQQVA 181 Query 192 IQLAELMRDRFGISVVIDDNLPDTA--KRRYHPDTKVLRVAHWLMPGQRAFQIATQLALV 249 LAE ++ GI V + + +A +R + K LR++ L PGQ+AFQI TQLA + Sbjct 182 ASLAERLKSHHGIDVRVGETGDASADLQRNFDSGDKTLRLSARLQPGQQAFQIGTQLAFL 241 Query 250 GQSDLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGRR 309 D I ++V + +R +ARIGLANYFAGA LLPY F AE +RYDI L+G+ Sbjct 242 EHRDTIDALVGENPFGDEASRRLARIGLANYFAGALLLPYAGFREKAESVRYDITLIGQH 301 Query 310 FGVGFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVH 369 FGVG+ETVCHRLSTLQRP RG+PF F+R D+AGNISKRQSAT FHFSR GG+CPLW V+ Sbjct 302 FGVGYETVCHRLSTLQRPGARGVPFFFIRVDRAGNISKRQSATDFHFSRGGGTCPLWNVY 361 Query 370 DAFAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVYS 429 +AF+QP+RI+ Q+A+MPD R+Y WVA+T + D GY P K FAV LGCDL HA +LVYS Sbjct 362 EAFSQPDRILTQLARMPDHRTYLWVARTVSHDQAGYHAPRKTFAVALGCDLQHAGRLVYS 421 Query 430 TGVVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPYSST 482 G+ L +P+ PIGAGC+IC R +C QRAFP +G + VDEN S PYS+ Sbjct 422 DGLDLTNPAAATPIGAGCRICERQACPQRAFPPVGRPLHVDENRNSFSPYSTN 474 >gi|94498385|ref|ZP_01304943.1| Transcriptional Regulator, XRE family protein [Sphingomonas sp. SKA58] gi|94422140|gb|EAT07183.1| Transcriptional Regulator, XRE family protein [Sphingomonas sp. SKA58] Length=461 Score = 475 bits (1223), Expect = 6e-132, Method: Compositional matrix adjust. Identities = 239/451 (53%), Positives = 310/451 (69%), Gaps = 6/451 (1%) Query 33 QVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSAQYFSSDSDARLVADLSDVF 92 QV LA AL +S+SY+NQLE +QRP+TVPVLL + F + Q FS D +ARL+ +L D Sbjct 16 QVDLANALGISSSYLNQLEQNQRPLTVPVLLKINAVFGVDVQLFSEDEEARLITELRDAL 75 Query 93 TDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAATEELEGYRSRATAE-TELPPAR 151 +D A+S A+I E MP VG +L+++HRR R A E E ++ + PAR Sbjct 76 SDSA--EAISVAEIRELATNMPAVGRTLISLHRRYREAAERSEAMAAQLGDDWISGGPAR 133 Query 152 PMPFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTGGLDIQLAELMRDRFGISVVIDDN 211 M FE+VRDFFY R+N++ LD AAER++ E+G+ + L ++DR + +V ++ Sbjct 134 -MAFEQVRDFFYARHNHVKPLDEAAERIYREAGLAPHSVHPGLVAWLKDRHDVQIVWGES 192 Query 212 LPDTAKRRYHPDTKVLRVAHWLMPGQRAFQIATQLALVGQSDLISSIVATDDQLSTEARG 271 DTA+RRY P T+ L V+ L GQ+AFQ+ATQLA + +I + EAR Sbjct 193 --DTAQRRYDPATRTLHVSAHLHQGQQAFQMATQLAFLELGSVIDRLADNSLLSGDEARR 250 Query 272 VARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGRRFGVGFETVCHRLSTLQRPRQRG 331 +AR+GLANYFAGA +LPY +F AAE YDI+ LGRRFGVGFET+CHRLSTLQR RG Sbjct 251 LARVGLANYFAGALILPYGDFLAAAEAEAYDIEKLGRRFGVGFETICHRLSTLQRAEARG 310 Query 332 IPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVHDAFAQPERIVRQVAQMPDGRSY 391 IPF FVR D+AGNISKRQSAT FHFSRVGGSCPLW V++AF QP R++RQ+AQMPDGR+Y Sbjct 311 IPFFFVRVDRAGNISKRQSATDFHFSRVGGSCPLWKVYEAFTQPGRVLRQIAQMPDGRTY 370 Query 392 FWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVYSTGVVLDDPSTEVPIGAGCKICN 451 W+A+T ++ G+ P K FAVGLGCD+ HA +L+YS G+ LDDP+ PIGAGCK+C Sbjct 371 LWIARTVSSGNAGFDVPGKTFAVGLGCDIRHASRLIYSRGLDLDDPAAATPIGAGCKVCE 430 Query 452 RTSCAQRAFPYLGGRVAVDENAGSSLPYSST 482 R +C QRAFP +G VAVDEN + PY + Sbjct 431 RPACPQRAFPAIGRAVAVDENRSTLAPYPAA 461 >gi|209967048|ref|YP_002299963.1| hypothetical protein RC1_3808 [Rhodospirillum centenum SW] gi|209960514|gb|ACJ01151.1| conserved hypothetical protein [Rhodospirillum centenum SW] Length=484 Score = 473 bits (1216), Expect = 5e-131, Method: Compositional matrix adjust. Identities = 254/466 (55%), Positives = 318/466 (69%), Gaps = 4/466 (0%) Query 15 RTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSAQ 74 + F G RLRRLR+ERGLTQ ALA+AL+LS SY+NQLE + RP+TVPVLL + F + Q Sbjct 22 KQFVGVRLRRLREERGLTQAALARALELSPSYLNQLEQNLRPLTVPVLLRINAVFGVDVQ 81 Query 75 YFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAATEEL 134 FS D +ARL+ADL + ++ G+ V+ A++ E A MP VG +L+A+HRR R A L Sbjct 82 MFSEDDEARLIADLREALSEAGLADGVALAELRELAAGMPAVGRALLALHRRGREAAGRL 141 Query 135 EGYRSRATAETELPPARP-MPFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTGGLDIQ 193 E S E A+P MPFEEVRDFFY R+N++ +LD A E + E+G+ G + Sbjct 142 EQL-SGHLGEGWQDAAKPLMPFEEVRDFFYARHNHVAELDEAGEALQREAGLVAGDMAAG 200 Query 194 LAELMRDRFGISVVIDDNLPDTAKRRYHPDTKVLRVAHWLMPGQRAFQIATQLALVGQSD 253 LA + R + V+ D RRY ++ LR++ L PGQRAFQ+ATQLA + + Sbjct 201 LARHLARRHDVRVLADGEA--AVPRRYDAASRTLRLSADLTPGQRAFQMATQLAFLDRGA 258 Query 254 LISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGRRFGVG 313 ++ ++A D EAR +ARIGLA+YFAGA LLPYR F AAE LRYDI+ L R+FGVG Sbjct 259 MLDGLIAQADFSGEEARRLARIGLASYFAGAVLLPYRPFLAAAEALRYDIERLERQFGVG 318 Query 314 FETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVHDAFA 373 FETVCHRLSTLQRP +RG+PF FVR D+AGNISKRQSAT FHFSRVGGSCPLW V++AFA Sbjct 319 FETVCHRLSTLQRPGERGVPFFFVRVDRAGNISKRQSATDFHFSRVGGSCPLWNVYEAFA 378 Query 374 QPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVYSTGVV 433 QP RI+ Q A MPDGR Y W+A+T G+ P + FAVGLGCDL HA +LVY+ G+ Sbjct 379 QPGRILIQRAAMPDGRQYLWLARTVGRGAGGFGAPARQFAVGLGCDLRHAARLVYAKGLD 438 Query 434 LDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPY 479 L DP PIGAGCK+C R CAQRAFP +G + VDE PY Sbjct 439 LADPEAATPIGAGCKVCERADCAQRAFPMIGRPLQVDEAVRRFAPY 484 >gi|300783560|ref|YP_003763851.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299793074|gb|ADJ43449.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|340524948|gb|AEK40153.1| XRE family transcriptional regulator [Amycolatopsis mediterranei S699] Length=474 Score = 470 bits (1210), Expect = 2e-130, Method: Compositional matrix adjust. Identities = 224/472 (48%), Positives = 322/472 (69%), Gaps = 3/472 (0%) Query 15 RTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSAQ 74 +TF+GARLR LR+ R ++Q LA+ L++S SY+NQ+E++ RP+TVPVLL +T+ F + + Sbjct 3 KTFAGARLRHLRESRSMSQADLARVLEISPSYLNQIEHNSRPLTVPVLLRITQAFGVDTE 62 Query 75 YFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAATEEL 134 +F+++ +RLVAD+ + D + V+ ++ E +P + +LV +HR R A E Sbjct 63 FFANNDTSRLVADVKEALLDEALGIDVTTGELNELATNLPAIAQALVKLHRSYRNAVENT 122 Query 135 EGYRSRATAETELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTGGLDIQL 194 + A P+P EEVRDFFY+R NY+ +LD AE+M + ++ G + L Sbjct 123 AALTTENGLGLHGSAAAPLPHEEVRDFFYERENYVAELDERAEKMAADIPLQRGQVLGAL 182 Query 195 AELMRDRFGISVVIDDNLPDTA--KRRYHPDTKVLRVAHWLMPGQRAFQIATQLALVGQS 252 E + R+G+ V + + + A + RY P T+VLR+A L GQ+AF++A+Q+AL+ Sbjct 183 KERLSQRYGVEVT-SEGIDEAAGQQHRYEPVTRVLRLAPSLRVGQQAFRMASQIALLEYD 241 Query 253 DLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGRRFGV 312 DLI+ + + AR +AR+GLANYFAGA +LPY F AAE+ RYDI+ L +GV Sbjct 242 DLITELADSWAFSGPAARSLARVGLANYFAGALILPYGPFLAAAERFRYDIERLCDHYGV 301 Query 313 GFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVHDAF 372 GFETVCHRLSTLQRP+QRG+PF FVR D+AGN+SKRQSA FHFSRVGG+CPLW +++AF Sbjct 302 GFETVCHRLSTLQRPKQRGVPFSFVRVDRAGNMSKRQSAAGFHFSRVGGACPLWNIYEAF 361 Query 373 AQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVYSTGV 432 QP +I+ Q+A +PDG+SYFW+A+T + + GY P K F VGLGC+L HA +LVYSTG+ Sbjct 362 TQPGKILTQIATLPDGKSYFWIARTVSRNIGGYGSPGKTFTVGLGCELRHAGRLVYSTGL 421 Query 433 VLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPYSSTEQ 484 LD+P+ PIG GCK+C R +C+QRAFP +G ++ VDEN + +PY + + Sbjct 422 DLDEPAAATPIGMGCKVCERPACSQRAFPTIGKQLTVDENTSTFVPYPAVPK 473 >gi|312114583|ref|YP_004012179.1| XRE family transcriptional regulator [Rhodomicrobium vannielii ATCC 17100] gi|311219712|gb|ADP71080.1| transcriptional regulator, XRE family [Rhodomicrobium vannielii ATCC 17100] Length=477 Score = 469 bits (1206), Expect = 6e-130, Method: Compositional matrix adjust. Identities = 240/472 (51%), Positives = 310/472 (66%), Gaps = 5/472 (1%) Query 14 SRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSA 73 + F G +L+RLR+ERGLTQ+A A+A+ LS SY+NQLE +QRP+TVPVLL + F Sbjct 2 KKVFVGVKLKRLREERGLTQIAFAEAIGLSASYLNQLEKNQRPLTVPVLLRINATFGADM 61 Query 74 QYFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAATEE 133 Q S +AR++ADL +VF+D VS A+I E A MP G ++VA+HRRLR TE Sbjct 62 QLLSDGDEARMIADLKEVFSDPASGETVSLAEIREIAASMPAAGRAIVALHRRLRHVTER 121 Query 134 LEGY-RSRATAETELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTGGLDI 192 + L PMPFE+VRDFFY +NY +LD AAE++F E+ + G + Sbjct 122 GDAMAHELGLGAAGLATVAPMPFEQVRDFFYRHHNYFAELDEAAEKLFAEAELVEGEVVE 181 Query 193 QLAELMRDRFGISVVI---DDNLPD-TAKRRYHPDTKVLRVAHWLMPGQRAFQIATQLAL 248 LA + R G+ + + + P A R Y+P +VLR++ L GQRAFQ+ATQLA Sbjct 182 GLARYLEQRHGVRIGVRKPEGEAPSRQANRDYNPKERVLRLSARLDQGQRAFQMATQLAF 241 Query 249 VGQSDLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGR 308 + + ++ + S +ARIGLANYFA A L+PYR F AAE RYDID L Sbjct 242 LEMGEPLNRLAREAALGSPATHALARIGLANYFAAALLMPYRAFLAAAEAARYDIDRLAE 301 Query 309 RFGVGFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVV 368 +FGVGFET+ HRLS+LQRP G+PF +R D+AGNISKRQSAT FHFSRVGG+CPLW V Sbjct 302 QFGVGFETISHRLSSLQRPSAAGVPFFLIRVDRAGNISKRQSATDFHFSRVGGACPLWNV 361 Query 369 HDAFAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVY 428 ++AFAQP R + QVAQM DGR+Y W+A+ GY P K FA+GLGCD+ HA +LVY Sbjct 362 YEAFAQPGRTLTQVAQMTDGRTYLWIARAVRHTVGGYGEPDKTFAIGLGCDIRHAPRLVY 421 Query 429 STGVVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPYS 480 S G+ LDDP+ PIGAGCK+C R SC QRAFP +G +AV+EN + LPY+ Sbjct 422 SKGLDLDDPAAATPIGAGCKVCERPSCPQRAFPMIGRSLAVNENRSTFLPYA 473 >gi|302524912|ref|ZP_07277254.1| DNA-binding protein [Streptomyces sp. AA4] gi|302433807|gb|EFL05623.1| DNA-binding protein [Streptomyces sp. AA4] Length=474 Score = 468 bits (1205), Expect = 7e-130, Method: Compositional matrix adjust. Identities = 222/473 (47%), Positives = 323/473 (69%), Gaps = 3/473 (0%) Query 15 RTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSAQ 74 +TF+GARLR LR+ R ++Q LA+ L++S SY+NQ+E++ RP+TVPVLL +T+ F + + Sbjct 3 KTFAGARLRHLRESRSMSQADLARVLEISPSYLNQIEHNSRPLTVPVLLRITQAFGVDTE 62 Query 75 YFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAATEEL 134 +F+++ ++LVAD+ + D V + +++ E + +P + +LV +HR R A E Sbjct 63 FFANNDTSQLVADVKEALLDEAVGVEATTSELNELASNLPSIAQALVKLHRSYRNAVEST 122 Query 135 EGYRSRATAETELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTGGLDIQL 194 + A P+P EEVRDFFY+R NY+ +LD AE+M + +R G + L Sbjct 123 AALTTENGLGLHGSAAAPLPHEEVRDFFYERENYVAELDERAEKMAAQIPLRRGSVLGSL 182 Query 195 AELMRDRFGISVVIDDNLPDTA--KRRYHPDTKVLRVAHWLMPGQRAFQIATQLALVGQS 252 E + R+G+ V ++ + ++A + RY P T+VLR+A L GQ+AF++A+Q+AL+ Sbjct 183 KERLWQRYGVDVT-NEGINESAGEQHRYEPATRVLRLAPSLRVGQQAFRMASQIALLEYD 241 Query 253 DLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGRRFGV 312 DLI+ + + AR +AR+GLANYFAGA +LPY F AAE+ RYDI+ L FGV Sbjct 242 DLITELADSWAFSGPAARTLARVGLANYFAGALILPYGPFLAAAEEFRYDIERLCDHFGV 301 Query 313 GFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVHDAF 372 GFET CHRLSTLQRP+QRG+PF FVR D+AGN+SKRQSA FHFSRVGG+CPLW +++AF Sbjct 302 GFETTCHRLSTLQRPKQRGVPFSFVRVDRAGNMSKRQSAAGFHFSRVGGACPLWNIYEAF 361 Query 373 AQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVYSTGV 432 P +I+ Q+A +PDG+ YFWVA+T + + GY P K F VGLGC+L HA +L+YSTG+ Sbjct 362 TSPGKILTQIAALPDGKRYFWVARTVSRNIGGYGSPGKTFTVGLGCELRHAGRLIYSTGL 421 Query 433 VLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPYSSTEQS 485 LD+P+ PIG GCK+C+R +C+QRAFP +G + VDEN + +PY + ++ Sbjct 422 DLDEPAAATPIGMGCKVCDRPACSQRAFPAIGKPLTVDENTSTFVPYPAVPKT 474 >gi|121611363|ref|YP_999170.1| hypothetical protein Veis_4449 [Verminephrobacter eiseniae EF01-2] gi|121556003|gb|ABM60152.1| transcriptional regulator, XRE family [Verminephrobacter eiseniae EF01-2] Length=524 Score = 468 bits (1203), Expect = 1e-129, Method: Compositional matrix adjust. Identities = 251/470 (54%), Positives = 317/470 (68%), Gaps = 9/470 (1%) Query 15 RTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSAQ 74 +TF G RLRRLR+ERG+ Q ALA AL+LS SY+NQLE +QRP+TV VLL + F L Q Sbjct 31 KTFIGVRLRRLREERGMNQAALAHALELSPSYLNQLEQNQRPLTVAVLLKINRMFGLDVQ 90 Query 75 YFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAATEEL 134 FS D +ARL++DL +V VS A++ E A MP V +L+ +H R R A + Sbjct 91 MFSDDDEARLISDLREVLAHAAAPDTVSLAEVRELAAGMPAVARTLIRMHGRQREALARI 150 Query 135 EGYRSRATAE-TELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMFTE---SGMRTGGL 190 E R E + LP PMP+EEVRDFF R N+I +LD AAERM E S GL Sbjct 151 EDMALRLGDERSGLPGIPPMPYEEVRDFFTARQNHIGELDEAAERMAAEWAGSESVAQGL 210 Query 191 DIQLAELMRDRFGISVV-IDDNLPDTAKRRYHPDTKVLRVAHWLMPGQRAFQIATQLALV 249 + +L + R + VV D + DT +R Y P ++L+++ L GQ AFQ+ATQLA + Sbjct 211 ERRLQQ----RHAVRVVQTDPDSGDTVQRCYDPQRRLLQLSASLDAGQAAFQMATQLAFL 266 Query 250 GQSDLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGRR 309 SD++ + A+ D AR +ARIGLANYFAGA LLPY F AAE RYDID LGRR Sbjct 267 EMSDMLHRLSASADLSCEPARALARIGLANYFAGALLLPYTRFLEAAEAWRYDIDRLGRR 326 Query 310 FGVGFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVH 369 FGVGFETVCHRLSTLQRP R +PF FVR D+AGNISKRQSAT FHFSR GG+CPLW V+ Sbjct 327 FGVGFETVCHRLSTLQRPSARAVPFFFVRVDRAGNISKRQSATHFHFSRAGGTCPLWNVY 386 Query 370 DAFAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVYS 429 +AFAQP RI+ Q+A+MPDGR+Y WVA++ ++ GY P K FA+GLGCD+ HA +LVY+ Sbjct 387 EAFAQPGRILTQLARMPDGRAYLWVARSVSSAQEGYGQPGKTFAIGLGCDIQHAPRLVYA 446 Query 430 TGVVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPY 479 G+ L DP PIG GCK+C R +C QRAFP++G ++ +DEN + PY Sbjct 447 KGLDLKDPQVPTPIGMGCKVCEREACPQRAFPFIGRQIDIDENRRTLTPY 496 >gi|160901295|ref|YP_001566877.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1] gi|160366879|gb|ABX38492.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1] Length=470 Score = 467 bits (1202), Expect = 2e-129, Method: Compositional matrix adjust. Identities = 237/470 (51%), Positives = 315/470 (68%), Gaps = 9/470 (1%) Query 14 SRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSA 73 +TF G +LR+LR E GL+Q+ALA AL LS SY+NQLE +QRP+TV VLL L + Sbjct 2 KKTFMGVKLRKLRAEHGLSQIALAHALGLSPSYLNQLEQNQRPLTVSVLLKLNRALGVDI 61 Query 74 QYFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAATEE 133 Q FS D +ARLVA L + + +++ +++E A+MP +G +++A+HRR A E Sbjct 62 QQFSEDEEARLVAGLREALAE--SPESIALPELQEVAAQMPALGRAVMALHRRHLEALER 119 Query 134 LEGYRSR-ATAETELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTGGLDI 192 +E R +++P AR MPFE VRDFF+ NY ++D AA+ + E+ G L Sbjct 120 IESMALRLGDDRSDMPVARTMPFEAVRDFFFAHQNYFDEVDRAAQALAGEARADPGHLAD 179 Query 193 QLAELMRDRFGISVVIDDNLPDT--AKRRYHPDTKVLRVAHWLMPGQRAFQIATQLALVG 250 L ++ R G+ V L D+ ++RR+ P T+ L ++ L P Q+AFQ+ TQLAL+ Sbjct 180 WLVRRLQQRHGVQV---HRLEDSRQSQRRFDPATRSLWLSSALEPAQQAFQLGTQLALLE 236 Query 251 QSDLISSIVATDD-QLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGRR 309 D + ++AT Q + +AR+GLANYFAGA LLPY F AAEQLRYDIDLLG+R Sbjct 237 MGDTLDRLIATAAFQGDPASCKLARVGLANYFAGALLLPYDLFLEAAEQLRYDIDLLGQR 296 Query 310 FGVGFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVH 369 FGVGFETVCHRLSTLQRP G+PF FVR D+AGNISKRQSAT FHFSR GG+CPLW V+ Sbjct 297 FGVGFETVCHRLSTLQRPGAPGVPFFFVRVDRAGNISKRQSATHFHFSRTGGTCPLWTVY 356 Query 370 DAFAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVYS 429 +AF QP++++RQ+A MPDGR Y W+A++ + GY P K F++GLGCD+ HA +LVY+ Sbjct 357 EAFGQPDQVLRQLASMPDGRRYLWIARSVSHGQRGYGSPRKTFSIGLGCDIRHAARLVYA 416 Query 430 TGVVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPY 479 G+ L DP + PIG GCK+C R C QRAFPY+G + VDENA PY Sbjct 417 KGLDLGDPESATPIGMGCKVCERDQCTQRAFPYVGKALHVDENASRFAPY 466 >gi|333912394|ref|YP_004486126.1| XRE family transcriptional regulator [Delftia sp. Cs1-4] gi|333742594|gb|AEF87771.1| transcriptional regulator, XRE family [Delftia sp. Cs1-4] Length=470 Score = 466 bits (1199), Expect = 4e-129, Method: Compositional matrix adjust. Identities = 234/468 (50%), Positives = 313/468 (67%), Gaps = 5/468 (1%) Query 14 SRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSA 73 +TF G +LR+LR E GL+Q+ALA AL LS SY+NQLE +QRP+TV VLL L + Sbjct 2 KKTFMGVKLRKLRAEHGLSQIALAHALGLSPSYLNQLEQNQRPLTVSVLLKLNRALGVDI 61 Query 74 QYFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAATEE 133 Q FS D +ARLVA L + + +++ +++E A+MP +G +++A+HRR A E Sbjct 62 QQFSEDEEARLVAGLREALAE--APESIALPELQEVAAQMPALGRAVMALHRRHLEALER 119 Query 134 LEGYRSR-ATAETELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTGGLDI 192 +E R +++P AR MPFE VRDFF+ NY ++D AA+ + E+ G L Sbjct 120 IESMSLRLGDDRSDMPVARTMPFEAVRDFFFAHQNYFDEVDRAAQALAGEARADPGHLAD 179 Query 193 QLAELMRDRFGISVVIDDNLPDTAKRRYHPDTKVLRVAHWLMPGQRAFQIATQLALVGQS 252 L ++ R G+ V ++ ++RR+ P T+ L ++ L P Q+AFQ+ TQLAL+ Sbjct 180 WLVRRLQQRHGVQVHRSED-SRQSQRRFDPATRSLWLSSALEPAQQAFQLGTQLALLEMG 238 Query 253 DLISSIVATDD-QLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGRRFG 311 D + ++AT Q + +AR+GLANYFAGA LLPY F AEQLRYDIDLLG+RFG Sbjct 239 DTLDRLIATAAFQGDPASCKLARVGLANYFAGALLLPYDLFLETAEQLRYDIDLLGQRFG 298 Query 312 VGFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVHDA 371 VGFETVCHRLSTLQRP G+PF FVR D+AGNISKRQSAT FHFSR GG+CPLW V++A Sbjct 299 VGFETVCHRLSTLQRPGAPGVPFFFVRVDRAGNISKRQSATHFHFSRTGGTCPLWTVYEA 358 Query 372 FAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVYSTG 431 F QP++++RQ+A MPDGR Y W+A++ + GY P K F++GLGCD+ HA +LVY+ G Sbjct 359 FGQPDQVLRQLASMPDGRRYLWIARSVSHGQRGYGSPRKTFSIGLGCDIRHAARLVYAKG 418 Query 432 VVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPY 479 + L DP + PIG GCK+C R C QRAFPY+G + VDENA PY Sbjct 419 LDLGDPESATPIGMGCKVCERDQCTQRAFPYVGKALHVDENASRFAPY 466 >gi|338973436|ref|ZP_08628799.1| transcriptional regulator, XRE family [Bradyrhizobiaceae bacterium SG-6C] gi|338233031|gb|EGP08158.1| transcriptional regulator, XRE family [Bradyrhizobiaceae bacterium SG-6C] Length=474 Score = 466 bits (1198), Expect = 5e-129, Method: Compositional matrix adjust. Identities = 238/476 (50%), Positives = 314/476 (66%), Gaps = 11/476 (2%) Query 14 SRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSA 73 +TF G RL+RLR+ER LTQ ALA L +S SY+NQLEN+QRP+T+PVLL L F + Sbjct 2 KKTFMGVRLKRLREERQLTQAALAAKLGISLSYLNQLENNQRPLTLPVLLALNATFGVDV 61 Query 74 QYFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAATEE 133 Q FS D +ARL++DL + D + ++ A + E MP VG +LVA+HR+ R A E+ Sbjct 62 QTFSDDDEARLISDLREALADPAIGEPIATADLRELALNMPAVGRALVALHRQYRQAAEQ 121 Query 134 LEGY-----RSRATAETELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTG 188 R A LP PFEEVRDFFY NN+I +LD AAE + G Sbjct 122 GAALAARLGEDRQAASAILPST---PFEEVRDFFYANNNHIPELDEAAEAIVMRMKFPIG 178 Query 189 GLDIQLAELMRDRFGISVVID--DNLPDTAKRRYHPDTKVLRVAHWLMPGQRAFQIATQL 246 + LA + +R + +V+D D++P +R + T+V+ ++ L PGQ+AFQ ATQ+ Sbjct 179 RMAPALATYLEERHRVKIVLDAFDDIPAGTQRTFDVGTRVMHLSRRLRPGQQAFQFATQI 238 Query 247 ALVGQSDLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLL 306 A + + + SIV S EARG+ARIGLANYFAGA +LPY F + AE+ RYDI+LL Sbjct 239 AFLEFDNELRSIVKRSRFTSDEARGLARIGLANYFAGALVLPYTAFLKEAEKCRYDIELL 298 Query 307 GRRFGVGFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLW 366 G RFGVGFETVCHRLSTLQRP RG+PF F+R D+AGNISKRQSAT FHFSRVGG+CPLW Sbjct 299 GDRFGVGFETVCHRLSTLQRPNARGVPFFFIRVDRAGNISKRQSATDFHFSRVGGTCPLW 358 Query 367 VVHDAFAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKL 426 V++AFA P R++ Q A+MPD R+Y W+A+T + G+ P K FAV LGCD+ HA ++ Sbjct 359 NVYEAFASPGRVLTQFARMPDERTYLWIARTVSHGQGGFGAPMKTFAVALGCDVRHADRV 418 Query 427 VYSTGVVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPYSST 482 VY+ G+ +D T PIG GCK+C R C+QRAFP +G + VDE+ PY+++ Sbjct 419 VYARGLSIDSAVT-TPIGMGCKVCERPDCSQRAFPPIGRSLHVDESRTHFAPYATS 473 >gi|115525178|ref|YP_782089.1| XRE family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115519125|gb|ABJ07109.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris BisA53] Length=472 Score = 459 bits (1182), Expect = 4e-127, Method: Compositional matrix adjust. Identities = 231/470 (50%), Positives = 312/470 (67%), Gaps = 3/470 (0%) Query 15 RTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSAQ 74 +TF G RL+RLR+++ LTQ ALA L +S SY+NQLEN+QRP+T+PV L L F L Q Sbjct 3 KTFLGVRLKRLREQQRLTQAALAAKLGISLSYLNQLENNQRPLTLPVALALNATFGLDIQ 62 Query 75 YFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAATEEL 134 FS D +ARL+ADL + D + ++ A + E MP +G +LVA+ +R R A E+ Sbjct 63 SFSDDDEARLIADLREAVADPALVETIATADLRELALNMPAIGRTLVALSQRYRQAIEQS 122 Query 135 EGYRSRATAETELPPA--RPMPFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTGGLDI 192 +R + + A PFEEVRDFFY +NYI +LD AAE + ++ G + Sbjct 123 AALSARLGEDRQAASAILPSTPFEEVRDFFYAHHNYISELDEAAEAIALRMNLQPGRMAP 182 Query 193 QLAELMRDRFGISVVIDDNLPDTAKRRYHPDTKVLRVAHWLMPGQRAFQIATQLALVGQS 252 L L+ GI+++ID + +R + ++ +R++ L PGQ+AFQ+ATQ+A + Sbjct 183 ALTSLLEGDRGITILIDGSTESGLQREFDRQSRTVRLSSSLSPGQQAFQLATQIAFLDFD 242 Query 253 DLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGRRFGV 312 D I SIV+ S E+RG+ARIGLA+YFAGA +LPY F + A++ RYDI+LLG FGV Sbjct 243 DAIRSIVSNAAFTSDESRGLARIGLAHYFAGALVLPYSAFLQEAQRRRYDIELLGHTFGV 302 Query 313 GFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVHDAF 372 GFETVCHRLSTLQR RG+PF FVR D+AGNISKRQSAT FHFSRVGG+CPLW V++AF Sbjct 303 GFETVCHRLSTLQRHNARGVPFFFVRVDRAGNISKRQSATDFHFSRVGGTCPLWNVYEAF 362 Query 373 AQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVYSTGV 432 A P RI+ Q+A+MPD R+Y W+A+T + G+ P K FAV LGCD+ HA +VYS G+ Sbjct 363 ACPGRILTQLARMPDERTYLWIARTVSHSQGGHRAPAKTFAVALGCDVRHAGSVVYSEGL 422 Query 433 VLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPYSST 482 + DP+ PIG GCK+C R +C QRAFP +G + VDE PY+++ Sbjct 423 DI-DPAVATPIGMGCKVCERPNCPQRAFPPIGQALHVDETRAHFAPYATS 471 >gi|90425003|ref|YP_533373.1| XRE family transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90107017|gb|ABD89054.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris BisB18] Length=471 Score = 457 bits (1176), Expect = 2e-126, Method: Compositional matrix adjust. Identities = 230/470 (49%), Positives = 312/470 (67%), Gaps = 4/470 (0%) Query 15 RTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSAQ 74 +TF G RL+RLR+E LTQ ALA L +S SY+NQLEN+QRP+T+PV L L + F L Q Sbjct 3 KTFLGVRLKRLREEHRLTQAALAAKLGISLSYLNQLENNQRPLTLPVALALNKTFGLDIQ 62 Query 75 YFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAATEEL 134 FS D +ARL+ADL + D + ++ + + E MP +G +LVA+ +R R A E+ Sbjct 63 SFSEDDEARLIADLREAVADPALGETIATSDLRELALNMPAIGRTLVALSQRYRQAIEQS 122 Query 135 EGYRSRATAETELPPA--RPMPFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTGGLDI 192 +R + + A PFEEVRDFFY ++NYI +LD AAE + + G + Sbjct 123 AALSARLGEDRQAASAILPSTPFEEVRDFFYAQHNYIPELDEAAEAIALRMNLPPGRMAP 182 Query 193 QLAELMRDRFGISVVIDDNLPDTAKRRYHPDTKVLRVAHWLMPGQRAFQIATQLALVGQS 252 L+ + DR G++++I + +R + T+ +R++ L PGQ+AFQ+AT +A + Sbjct 183 ALSSFLEDR-GMTILIGGSTESGLQREFDRQTRTVRLSSSLHPGQQAFQLATHIAFLDFD 241 Query 253 DLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGRRFGV 312 D I SIV+ S E+RG+ARIGLA+YFAGA +LPY F + A++ RYDI+LLG FGV Sbjct 242 DAIRSIVSNAAFTSDESRGLARIGLAHYFAGALVLPYSAFLQEAQRRRYDIELLGHTFGV 301 Query 313 GFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVHDAF 372 GFET CHRLSTLQR RG+PF F+R D+AGNISKRQSAT FHFSRVGG+CPLW V++AF Sbjct 302 GFETACHRLSTLQRHNARGVPFFFIRVDRAGNISKRQSATDFHFSRVGGTCPLWNVYEAF 361 Query 373 AQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVYSTGV 432 A P RI+ Q+A+MPDGR+Y W+A+T + GY P K FAV LGCD+ HA +VYS G+ Sbjct 362 ACPGRILTQLARMPDGRTYLWIARTVSHSQGGYRAPGKTFAVALGCDVRHAGSVVYSEGL 421 Query 433 VLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPYSST 482 + DP+ PIG GCK+C R +C QRAFP +G + VDE PY+++ Sbjct 422 DI-DPAIATPIGMGCKVCERPNCPQRAFPPIGHALNVDETRAHFAPYATS 470 >gi|294678861|ref|YP_003579476.1| XRE family transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294477681|gb|ADE87069.1| transcriptional regulator, XRE family [Rhodobacter capsulatus SB 1003] Length=460 Score = 455 bits (1171), Expect = 7e-126, Method: Compositional matrix adjust. Identities = 233/470 (50%), Positives = 308/470 (66%), Gaps = 11/470 (2%) Query 14 SRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSA 73 ++ F G RL+RLR++RG+TQ +LA+AL++S SY+NQ+EN+QRP+TVPVLL L F L Sbjct 2 AKAFMGVRLKRLREDRGITQASLARALEISPSYLNQIENNQRPLTVPVLLKLNAAFGLDV 61 Query 74 QYFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAATEE 133 Q FS +ARL+A+L D G S A++ E A MP V ++VA+ RLR ++ Sbjct 62 QLFSDADEARLIAELRGALADQGA--GASLAEVREIAANMPAVARAIVAMQARLRDLSDR 119 Query 134 LEGYRSRATAETELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTGGLDIQ 193 + + + PA FE VRD+FY+R N++ DLD AAE + + + G + Sbjct 120 ADALAGQISTPASSSPA---AFEAVRDWFYERRNHVPDLDTAAEAVGAD--LPAGRMAQP 174 Query 194 LAELMRDRFGISVVIDDNLPDTAKRRYHPDTKVLRVAHWLMPGQRAFQIATQLALVGQSD 253 LAE + R GI ++ + RR+ P +L + L PGQ+AFQIATQLAL+ Q Sbjct 175 LAERLATRHGIRILHAEG---GILRRFEPGAGLLHLGAHLTPGQQAFQIATQLALLEQGG 231 Query 254 LISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGRRFGVG 313 L++ + A QL EA+ + R+GLANY+AGA ++PYR F AAE L YDI+LL RFGVG Sbjct 232 LMARLCAAT-QLDPEAQALLRVGLANYYAGALIMPYRAFLAAAEALSYDIELLAHRFGVG 290 Query 314 FETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVHDAFA 373 FETVCHRLSTLQRP RG+PF F+R D+AGNISKRQSAT FHFSR+GGSCPLW +++AF+ Sbjct 291 FETVCHRLSTLQRPEARGVPFFFIRVDRAGNISKRQSATDFHFSRIGGSCPLWNIYEAFS 350 Query 374 QPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVYSTGVV 433 +P+ I+RQVAQMPDGRSY W+A+ G G+ K FAV LGCDLAHA +LVY+ G+ Sbjct 351 RPDEILRQVAQMPDGRSYLWIARQLRQGGGGFGAAEKRFAVALGCDLAHADRLVYARGLN 410 Query 434 LDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPYSSTE 483 L P IG GCK+C R C QRAFP LG + + PYS +E Sbjct 411 LRAPDLATKIGPGCKLCERADCPQRAFPTLGKPLRLRPEETRFAPYSGSE 460 >gi|319762600|ref|YP_004126537.1| hypothetical protein Alide_1906 [Alicycliphilus denitrificans BC] gi|330824690|ref|YP_004387993.1| XRE family transcriptional regulator [Alicycliphilus denitrificans K601] gi|317117161|gb|ADU99649.1| Protein of unknown function DUF2083,transcriptional regulator [Alicycliphilus denitrificans BC] gi|329310062|gb|AEB84477.1| transcriptional regulator, XRE family [Alicycliphilus denitrificans K601] Length=486 Score = 455 bits (1171), Expect = 8e-126, Method: Compositional matrix adjust. Identities = 248/481 (52%), Positives = 317/481 (66%), Gaps = 16/481 (3%) Query 15 RTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSAQ 74 +TF G RLRRLR+ERGLTQVALA+ALD+S SY+NQ+E +QRP+TVPVLL + F + Q Sbjct 3 KTFMGVRLRRLREERGLTQVALARALDISASYLNQIEQNQRPLTVPVLLKINAVFGVDVQ 62 Query 75 YFSSDSDARLVADLSDVFTDI---GVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAAT 131 FS D +ARL+A L DV D+ AVS A+I E A MP V +L+A+HR R A Sbjct 63 RFSDDDEARLIAGLRDVLADMPAGAAADAVSLAEIRELAASMPAVARALLALHRGQREAH 122 Query 132 EELEG----YRSRATAETELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRT 187 E LE Y A PM +EEVRDFF+ R+N+I +LD AAER+ + + Sbjct 123 ERLEALSAHYGDERGGAAGAAHAPPMAYEEVRDFFFARHNHIAELDDAAERLAGQWRLAP 182 Query 188 GGLDIQLAELMRDRFGISVVI---------DDNLPDTAKRRYHPDTKVLRVAHWLMPGQR 238 G + L + + G+ V + D + +R + +VL ++ L P QR Sbjct 183 GASEAGLRQRLERAHGVRVSLPAEGLPGHGQDGAGEAMQRSFDAAARVLYLSPALRPAQR 242 Query 239 AFQIATQLALVGQSDLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQ 298 AFQ+ATQLA + + IV AR +ARIGLANYFAGA LLPY F ++AE Sbjct 243 AFQMATQLAFLEVPQELQRIVDAAQLSGDAARALARIGLANYFAGALLLPYAPFLQSAEA 302 Query 299 LRYDIDLLGRRFGVGFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSR 358 L YDI+ LG+R+GVGFETVCHRLSTLQRP RG+PF F+R D+AGNISKRQSAT FHFS+ Sbjct 303 LHYDIERLGQRWGVGFETVCHRLSTLQRPGARGVPFFFIRVDRAGNISKRQSATHFHFSK 362 Query 359 VGGSCPLWVVHDAFAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGC 418 +GG+CPLW V++AFAQP RIVRQ+A+MPDGR+Y WVA+T A G+ P K F+V LGC Sbjct 363 IGGTCPLWNVYEAFAQPGRIVRQLARMPDGRAYLWVARTVARSTGGWGAPGKTFSVALGC 422 Query 419 DLAHAHKLVYSTGVVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLP 478 D+ HA +LVY+ G+ L DP VPIG GCK+C RT+C QRAFP +G + V+EN S +P Sbjct 423 DVQHAPQLVYARGLDLADPDAPVPIGMGCKVCERTACPQRAFPPMGRALEVNENRSSLVP 482 Query 479 Y 479 Y Sbjct 483 Y 483 >gi|254390935|ref|ZP_05006145.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294816563|ref|ZP_06775205.1| XRE family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|326445482|ref|ZP_08220216.1| XRE family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|197704632|gb|EDY50444.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294321378|gb|EFG03513.1| XRE family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length=480 Score = 454 bits (1169), Expect = 1e-125, Method: Compositional matrix adjust. Identities = 235/470 (50%), Positives = 298/470 (64%), Gaps = 4/470 (0%) Query 12 TYSRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDL 71 T R ++ A+LRRLR+E G+ QV +A+AL +STSY NQLE QRP+T PVLL + E F + Sbjct 6 TGRRIYAHAKLRRLRREHGMNQVEMARALAISTSYANQLEQSQRPLTAPVLLRIAEVFGV 65 Query 72 SAQYFSSDSDARLVADLSDVFTDIGVEHAVSGAQ-IEEFVARMPEVGHSLVAVHRRLRAA 130 +YFS + RL DL D + GA+ I E PEV +LVA+HRR R Sbjct 66 DPEYFSEADEDRLATDLRAALADEACGAELPGAEEINEAARDHPEVARALVALHRRYRDT 125 Query 131 TEELEGYRSRATAETELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTGGL 190 E + E L P P +EVRDFFY +N+ LD AER +R G Sbjct 126 VERATALAPARSGEAGLAPGEP--HDEVRDFFYAHHNHFGPLDTEAERTAEALELRPGRT 183 Query 191 DIQLAELMRDRFGISVVIDDNLPDTAKRRYHPDTKVLRVAHWLMPGQRAFQIATQLALVG 250 +AE + R G+ +V + RRY P + VL ++ WL GQRAFQ+ATQLAL+ Sbjct 184 ADPIAERLTGRHGVRIVRTAPGRSSDTRRYDPGSGVLFLSPWLSDGQRAFQLATQLALLE 243 Query 251 QSDLISSIVATDDQL-STEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGRR 309 L+ + +L S E+ +ARIGLANYFAGA L+PY FH AAE+ YDI+LL R Sbjct 244 HGPLLGRLAGDGPELTSPESTALARIGLANYFAGALLMPYTAFHEAAEEAGYDIELLSAR 303 Query 310 FGVGFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVH 369 FGVGFE VCHRLSTLQR RG+PF F+R D+AGNISKRQSAT FHFSR+GG+CPLW V+ Sbjct 304 FGVGFEAVCHRLSTLQRTGCRGVPFSFLRVDRAGNISKRQSATDFHFSRLGGTCPLWTVY 363 Query 370 DAFAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVYS 429 +AF+ P RI+ QVA+MPDG+ YFW+A+T G G+ P FAV LGC+L HAH+LVY+ Sbjct 364 EAFSAPGRILTQVAEMPDGKRYFWIARTVTRGGFGHHAPRAEFAVALGCELQHAHRLVYA 423 Query 430 TGVVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPY 479 GV LD P PIG GC+IC R CAQRA P GGR+A+D + + +PY Sbjct 424 EGVALDAPRAATPIGLGCRICERRDCAQRARPPAGGRLAIDPDRRTYVPY 473 >gi|221068405|ref|ZP_03544510.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1] gi|220713428|gb|EED68796.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1] Length=491 Score = 450 bits (1158), Expect = 2e-124, Method: Compositional matrix adjust. Identities = 239/488 (49%), Positives = 311/488 (64%), Gaps = 22/488 (4%) Query 14 SRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSA 73 ++TF G RLR LR ERGLTQVALA+AL+LS SY+NQ+E DQRP+TV VLL + + Sbjct 2 AKTFMGVRLRSLRAERGLTQVALAQALELSPSYLNQIEQDQRPLTVSVLLRIHRVLGVDI 61 Query 74 QYFSSDSDARLVADLSDVFTDIGV-EHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAATE 132 Q FS D +ARL+A L D + + E AV ++ E AR+P++ +L+A+H+R A + Sbjct 62 QQFSEDEEARLLAQLRDAVAAMPLPEAAVPLPELREVAARLPQLAQALLAIHQRHLADAQ 121 Query 133 ELEGYRSR------------------ATAETELPPARPMPFEEVRDFFYDRNNYIHDLDM 174 LE + A A P+R MPFE VRDFF+ R N+ LD Sbjct 122 RLEALSAHLGDGRAGQDGGGAVNGKAAMAGLLTQPSRQMPFEAVRDFFFARRNHFDGLDR 181 Query 175 AAERMFTESGMRTGGLDIQLAELMRDRFGISVV---IDDNLPDTAKRRYHPDTKVLRVAH 231 AAE + ++ + G L L ++ R G+ V+ + ++ RRY T+ L VA Sbjct 182 AAESLARQAAEQGGHLQDWLQYRLQARHGVLVLRSHAANAETASSHRRYDASTRTLYVAA 241 Query 232 WLMPGQRAFQIATQLALVGQSDLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYRE 291 L P Q+AFQ+ATQLAL+ LI++ + R +AR+GLANY AGAF+LPY E Sbjct 242 QLSPMQQAFQLATQLALLEFDALIATELQGAPWQDEATRRLARVGLANYVAGAFVLPYGE 301 Query 292 FHRAAEQLRYDIDLLGRRFGVGFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSA 351 F RAAE LRYDIDLL RFGVGFETVCHRLSTLQR G+PF F+R D+AGNISKRQSA Sbjct 302 FLRAAESLRYDIDLLASRFGVGFETVCHRLSTLQRADAPGVPFFFIRVDRAGNISKRQSA 361 Query 352 TAFHFSRVGGSCPLWVVHDAFAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKN 411 T FHFS+ GG+CPLW V++AF QP RIV Q+A MPDGR Y W+A+T + G G+ P K Sbjct 362 THFHFSKTGGTCPLWGVYEAFTQPGRIVPQLASMPDGRIYLWIARTISQAGPGWGAPGKT 421 Query 412 FAVGLGCDLAHAHKLVYSTGVVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDE 471 F++GLGCDL HA +LVYS G+ L + + PIG GCK+C R +C QRAFPY+ + V+E Sbjct 422 FSIGLGCDLQHAARLVYSQGMDLRNTAAATPIGMGCKVCERGACPQRAFPYVATPLQVNE 481 Query 472 NAGSSLPY 479 N +PY Sbjct 482 NESGFVPY 489 >gi|340625491|ref|YP_004743943.1| putative transcriptional regulatory protein [Mycobacterium canettii CIPT 140010059] gi|340003681|emb|CCC42804.1| putative transcriptional regulatory protein [Mycobacterium canettii CIPT 140010059] Length=474 Score = 447 bits (1150), Expect = 2e-123, Method: Compositional matrix adjust. Identities = 222/468 (48%), Positives = 308/468 (66%), Gaps = 2/468 (0%) Query 14 SRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSA 73 S+T+ G+R+R+LR ERG +Q ALA+ L++S SY+NQ+E+D RP+TV VLL +TE F + A Sbjct 2 SKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDA 61 Query 74 QYFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAATEE 133 +F+S D RLVA+L +V D ++ A+ ++ E V+ P + ++V +HRR R T + Sbjct 62 TFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLARAVVNLHRRYRITTAQ 121 Query 134 LEGYRSRATAETELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTGGLDIQ 193 L ++ + MP EEVRD+FY R NY+H+LD AAE + + M G L + Sbjct 122 LAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHELDTAAEDLTAQMRMHHGDLARE 181 Query 194 LAELMRDRFGISVVIDDNLPDTAKRRYHPDTKVLRVAHWLMPGQRAFQIATQLALVGQSD 253 L + + G+ + +L DT RY P T L ++ L PGQ+ F++A +LA + D Sbjct 182 LTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFGD 241 Query 254 LISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGRRFGVG 313 LI ++V S E+R +AR+GLANYFA A +LPYR+FH AE RYD++ L + V Sbjct 242 LIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSVS 301 Query 314 FETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVHDAFA 373 +ET+ HRLSTLQRP RG+PF FVR D+AGN+SKRQSAT FHFS GG+CPLW V++ FA Sbjct 302 YETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETFA 361 Query 374 QPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVYSTGVV 433 P +I+ Q+AQMPDGR+Y WVA+T Y P K FA+GLGC+L HAH+LVYS G+ Sbjct 362 NPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGLD 421 Query 434 LD-DPST-EVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPY 479 L DP+T PIGAGC++C R +C QRAFP LG + +DE+ + PY Sbjct 422 LSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPY 469 >gi|239988933|ref|ZP_04709597.1| XRE family transcriptional regulator [Streptomyces roseosporus NRRL 11379] gi|291445925|ref|ZP_06585315.1| transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|291348872|gb|EFE75776.1| transcriptional regulator [Streptomyces roseosporus NRRL 15998] Length=486 Score = 447 bits (1149), Expect = 2e-123, Method: Compositional matrix adjust. Identities = 238/467 (51%), Positives = 304/467 (66%), Gaps = 4/467 (0%) Query 15 RTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSAQ 74 + ++ ++LRRLR+ERG+ QV +A+AL +S SY NQ+E QRP+T VLL + + F + A+ Sbjct 9 KVYAHSKLRRLRRERGMNQVDMARALGISASYANQIELGQRPLTASVLLQIAKVFGVDAE 68 Query 75 YFSSDSDARLVADLSDVFTDIGVEHAVSGAQ-IEEFVARMPEVGHSLVAVHRRLRAATEE 133 +FS + RL ADL D AV + I E PEV +LVA+H R R E+ Sbjct 69 FFSEAAGDRLAADLRAALADEACGVAVPAVEEIAEAARDHPEVARALVALHHRYRETAEQ 128 Query 134 LEGYRSRATAETELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTGGLDIQ 193 S T +T LPPA P +EVRDFFY +N+ LD AER +R G Sbjct 129 AAALASPGTGQTLLPPAEP--HDEVRDFFYAHHNHFGPLDTEAERTAEALELRPGRAADP 186 Query 194 LAELMRDRFGISVVIDDNLPDTAKRRYHPDTKVLRVAHWLMPGQRAFQIATQLALVGQSD 253 L EL+ +R G+ VV RRY PDT +L ++ WL GQRAFQ+ATQLA + Q Sbjct 187 LTELLAERHGVHVVQAAPGRAADARRYDPDTGLLFLSPWLSDGQRAFQLATQLAFLEQRP 246 Query 254 LISSIVATDDQL-STEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGRRFGV 312 L+ + + +L S E+ +ARIGLANYFAGA L+PY FH AAE +RYDI+LL RFGV Sbjct 247 LMDELADSAPELTSPESSALARIGLANYFAGALLMPYTAFHAAAEAVRYDIELLSARFGV 306 Query 313 GFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVHDAF 372 GFETVCHRLSTLQR RG+PF F+R D+AGNISKRQSAT FHFSR+GG+CPLW V++AF Sbjct 307 GFETVCHRLSTLQRTGHRGVPFSFLRVDRAGNISKRQSATDFHFSRLGGTCPLWTVYEAF 366 Query 373 AQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVYSTGV 432 + P R + QVA+MPDG+ YFWVA+T G + P FAV LGC+L HAH+LVY+ GV Sbjct 367 SAPGRTLTQVAEMPDGKRYFWVARTITRGGYSHHAPRAEFAVALGCELRHAHRLVYAEGV 426 Query 433 VLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPY 479 LDDP PIG GC+IC R CAQRA P GGR+A+D + + +PY Sbjct 427 ALDDPRAATPIGLGCRICERRDCAQRARPPAGGRLAIDPDRRTYVPY 473 >gi|182435435|ref|YP_001823154.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|178463951|dbj|BAG18471.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] Length=468 Score = 446 bits (1148), Expect = 3e-123, Method: Compositional matrix adjust. Identities = 231/475 (49%), Positives = 308/475 (65%), Gaps = 10/475 (2%) Query 14 SRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSA 73 S+T++GARLRRLR++RG++Q LA+ L +S SY+NQ+E+D RP+TVPVLL LTE F + Sbjct 2 SKTYAGARLRRLREDRGMSQAELARTLAISPSYLNQMEHDARPLTVPVLLRLTEAFGVDP 61 Query 74 QYFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAATEE 133 +FS +RLVADL + + VS + + + ARMP V LV + RR + +E Sbjct 62 GFFSERDTSRLVADLREALSGELAAARVSPSDLADLAARMPAVARVLVDLGRRNQRLSER 121 Query 134 LEGYRSRATAETELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTGGLDIQ 193 + ++ ELP + P EE+RDFFY R NY+H+ D+AAE + E G+R G + Sbjct 122 IADAGDPRGSDPELPRS---PHEEIRDFFYRRQNYLHETDLAAEAVAAEIGIRPGDIISA 178 Query 194 LAELMRDRFGI--SVVIDDNLPDTAKRRYHPDTKVLRVAHWLMPGQRAFQIATQLALVGQ 251 L+ + DR G+ S D L Y T+ LR++ L PGQRAF++ATQLAL+ Sbjct 179 LSGRLADRHGVRFSTETGDRL-----HSYDEKTRTLRLSTRLRPGQRAFRMATQLALLEY 233 Query 252 SDLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGRRFG 311 D + A D A +ARIG+ANYFA A +LPY FH AAE+ RYDI+ L RFG Sbjct 234 GDGLDGQAAEDFPPGGPAHRLARIGIANYFAAALILPYEAFHTAAEEFRYDIERLTDRFG 293 Query 312 VGFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVHDA 371 +G+ETVCHRLSTLQRPR RG+PF FVR D+AGN+SKRQSAT FHFSR GG+CPLW V++A Sbjct 294 LGYETVCHRLSTLQRPRLRGVPFSFVRVDRAGNMSKRQSATGFHFSRAGGTCPLWNVYEA 353 Query 372 FAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVYSTG 431 FA P RI Q+A MPDG+ + W A+ G+ P K FA+GLGC++ HAH+LVYS G Sbjct 354 FASPGRIHVQIAAMPDGQRHLWTARAVTRHRGGWGEPGKTFAIGLGCEIRHAHRLVYSDG 413 Query 432 VVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPYSSTEQSV 486 + LD+ S PIG GC++C R C QRA P LG + +D+NA + +PY + S Sbjct 414 LDLDNASAATPIGMGCRVCERLDCPQRAAPPLGRPLRIDQNASTFVPYPVADPSA 468 >gi|289756539|ref|ZP_06515917.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85] gi|294995970|ref|ZP_06801661.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis 210] gi|298523942|ref|ZP_07011351.1| transcriptional regulatory protein [Mycobacterium tuberculosis 94_M4241A] gi|289712103|gb|EFD76115.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85] gi|298493736|gb|EFI29030.1| transcriptional regulatory protein [Mycobacterium tuberculosis 94_M4241A] gi|326902291|gb|EGE49224.1| transcriptional regulator [Mycobacterium tuberculosis W-148] gi|339293515|gb|AEJ45626.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis CCDC5079] gi|339297156|gb|AEJ49266.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis CCDC5180] Length=474 Score = 446 bits (1146), Expect = 5e-123, Method: Compositional matrix adjust. Identities = 222/468 (48%), Positives = 307/468 (66%), Gaps = 2/468 (0%) Query 14 SRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSA 73 S+T+ G+R+R+LR ERG +Q ALA+ L++S SY+NQ+E+D RP+TV VLL +TE F + A Sbjct 2 SKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDA 61 Query 74 QYFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAATEE 133 +F+S D RLVA+L +V D ++ A+ ++ E V+ P + ++V +HRR R T + Sbjct 62 TFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLARAVVNLHRRYRITTAQ 121 Query 134 LEGYRSRATAETELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMFTESGMRTGGLDIQ 193 L ++ + MP EEVRD+FY R NY+H LD AAE + + M G L + Sbjct 122 LAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLARE 181 Query 194 LAELMRDRFGISVVIDDNLPDTAKRRYHPDTKVLRVAHWLMPGQRAFQIATQLALVGQSD 253 L + + G+ + +L DT RY P T L ++ L PGQ+ F++A +LA + D Sbjct 182 LTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFGD 241 Query 254 LISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGRRFGVG 313 LI ++V S E+R +AR+GLANYFA A +LPYR+FH AE RYD++ L + V Sbjct 242 LIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSVS 301 Query 314 FETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVHDAFA 373 +ET+ HRLSTLQRP RG+PF FVR D+AGN+SKRQSAT FHFS GG+CPLW V++ FA Sbjct 302 YETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETFA 361 Query 374 QPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVYSTGVV 433 P +I+ Q+AQMPDGR+Y WVA+T Y P K FA+GLGC+L HAH+LVYS G+ Sbjct 362 NPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGLD 421 Query 434 LD-DPST-EVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPY 479 L DP+T PIGAGC++C R +C QRAFP LG + +DE+ + PY Sbjct 422 LSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPY 469 Lambda K H 0.322 0.136 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1035168197832 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40