BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1137c

Length=122
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15608277|ref|NP_215653.1|  hypothetical protein Rv1137c [Mycob...   239    1e-61
gi|340626151|ref|YP_004744603.1|  hypothetical protein MCAN_11481...   237    5e-61
gi|301633175|gb|ADK86729.1|  conserved hypothetical protein [Myco...  37.7    0.57 
gi|13507816|ref|NP_109765.1|  hypothetical protein MPN077 [Mycopl...  37.7    0.57 
gi|340789625|ref|YP_004755090.1|  type IV pilin PilA [Collimonas ...  34.3    6.0  


>gi|15608277|ref|NP_215653.1| hypothetical protein Rv1137c [Mycobacterium tuberculosis H37Rv]
 gi|31792332|ref|NP_854825.1| hypothetical protein Mb1169c [Mycobacterium bovis AF2122/97]
 gi|121637070|ref|YP_977293.1| hypothetical protein BCG_1199c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 16 more sequence titles
 Length=122

 Score =  239 bits (609),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 121/122 (99%), Positives = 122/122 (100%), Gaps = 0/122 (0%)

Query  1    VLSARCHIRHIGSPGKDARCAHLSATLRPGIGISPTNVGNATVLADGTPAKPIQGAETMQ  60
            +LSARCHIRHIGSPGKDARCAHLSATLRPGIGISPTNVGNATVLADGTPAKPIQGAETMQ
Sbjct  1    MLSARCHIRHIGSPGKDARCAHLSATLRPGIGISPTNVGNATVLADGTPAKPIQGAETMQ  60

Query  61   RARHTGSCFSANARGPAISSGNPSRAGCGVPSSTTTPSSTPQAIRLLACTDSDALTVTRT  120
            RARHTGSCFSANARGPAISSGNPSRAGCGVPSSTTTPSSTPQAIRLLACTDSDALTVTRT
Sbjct  61   RARHTGSCFSANARGPAISSGNPSRAGCGVPSSTTTPSSTPQAIRLLACTDSDALTVTRT  120

Query  121  AR  122
            AR
Sbjct  121  AR  122


>gi|340626151|ref|YP_004744603.1| hypothetical protein MCAN_11481 [Mycobacterium canettii CIPT 
140010059]
 gi|340004341|emb|CCC43484.1| hypothetical protein MCAN_11481 [Mycobacterium canettii CIPT 
140010059]
Length=121

 Score =  237 bits (604),  Expect = 5e-61, Method: Compositional matrix adjust.
 Identities = 120/121 (99%), Positives = 121/121 (100%), Gaps = 0/121 (0%)

Query  1    VLSARCHIRHIGSPGKDARCAHLSATLRPGIGISPTNVGNATVLADGTPAKPIQGAETMQ  60
            +LSARCHIRHIGSPGKDARCAHLSATLRPGIGISPTNVGNATVLADGTPAKPIQGAETMQ
Sbjct  1    MLSARCHIRHIGSPGKDARCAHLSATLRPGIGISPTNVGNATVLADGTPAKPIQGAETMQ  60

Query  61   RARHTGSCFSANARGPAISSGNPSRAGCGVPSSTTTPSSTPQAIRLLACTDSDALTVTRT  120
            RARHTGSCFSANARGPAISSGNPSRAGCGVPSSTTTPSSTPQAIRLLACTDSDALTVTRT
Sbjct  61   RARHTGSCFSANARGPAISSGNPSRAGCGVPSSTTTPSSTPQAIRLLACTDSDALTVTRT  120

Query  121  A  121
            A
Sbjct  121  A  121


>gi|301633175|gb|ADK86729.1| conserved hypothetical protein [Mycoplasma pneumoniae FH]
Length=537

 Score = 37.7 bits (86),  Expect = 0.57, Method: Composition-based stats.
 Identities = 21/55 (39%), Positives = 30/55 (55%), Gaps = 3/55 (5%)

Query  18   ARCAHLSATLRPGIGISPTNVGNATVLADGTPA---KPIQGAETMQRARHTGSCF  69
            ++   +S++L+ G  + P  VG+ T+LADGTP    K I G E    A  TG  F
Sbjct  117  SKLTKISSSLQQGQLLGPVQVGSQTMLADGTPVSLIKGINGNEIGTSASMTGYAF  171


>gi|13507816|ref|NP_109765.1| hypothetical protein MPN077 [Mycoplasma pneumoniae M129]
 gi|14286009|sp|P75040.2|Y077_MYCPN RecName: Full=Uncharacterized protein MG061 homolog 2
 gi|11379465|gb|AAG34737.1|AE000010_9 hypothetical protein MPN_077 [Mycoplasma pneumoniae M129]
Length=546

 Score = 37.7 bits (86),  Expect = 0.57, Method: Composition-based stats.
 Identities = 21/55 (39%), Positives = 30/55 (55%), Gaps = 3/55 (5%)

Query  18   ARCAHLSATLRPGIGISPTNVGNATVLADGTPA---KPIQGAETMQRARHTGSCF  69
            ++   +S++L+ G  + P  VG+ T+LADGTP    K I G E    A  TG  F
Sbjct  126  SKLTKISSSLQQGQLLGPVQVGSQTMLADGTPVSLIKGINGNEIGTSASMTGYAF  180


>gi|340789625|ref|YP_004755090.1| type IV pilin PilA [Collimonas fungivorans Ter331]
 gi|340554892|gb|AEK64267.1| Type IV pilin PilA [Collimonas fungivorans Ter331]
Length=145

 Score = 34.3 bits (77),  Expect = 6.0, Method: Compositional matrix adjust.
 Identities = 30/77 (39%), Positives = 36/77 (47%), Gaps = 3/77 (3%)

Query  41   ATVLADGTPAKPIQGAET-MQRARHTGSCFSANARGPAISSGNPSRAGCGVPSSTTTPSS  99
            A V+A GT AKP    ET MQ+   +  C S     PA S+GNP R    V       + 
Sbjct  48   AEVIAAGTAAKP--AVETCMQQLNTSTGCDSGAHGIPADSTGNPGRYVASVSVKNGVVTV  105

Query  100  TPQAIRLLACTDSDALT  116
             PQA   L  TD+  LT
Sbjct  106  VPQAKDGLLATDTYILT  122



Lambda     K      H
   0.315    0.127    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 127525862838


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40