BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1140
Length=282
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608280|ref|NP_215656.1| integral membrane protein [Mycobact... 558 3e-157
gi|289753207|ref|ZP_06512585.1| conserved hypothetical protein [... 557 8e-157
gi|340626155|ref|YP_004744607.1| putative integral membrane prot... 556 1e-156
gi|289573795|ref|ZP_06454022.1| membrane protein [Mycobacterium ... 556 1e-156
gi|254550139|ref|ZP_05140586.1| hypothetical protein Mtube_06724... 464 8e-129
gi|254820701|ref|ZP_05225702.1| hypothetical protein MintA_12281... 347 1e-93
gi|118616736|ref|YP_905068.1| integral membrane protein [Mycobac... 334 8e-90
gi|254774158|ref|ZP_05215674.1| caax amino protease family prote... 333 2e-89
gi|41408738|ref|NP_961574.1| hypothetical protein MAP2640c [Myco... 332 3e-89
gi|118465649|ref|YP_880527.1| caax amino protease [Mycobacterium... 332 4e-89
gi|183984281|ref|YP_001852572.1| integral membrane protein [Myco... 323 2e-86
gi|240172484|ref|ZP_04751143.1| integral membrane protein [Mycob... 314 1e-83
gi|296170029|ref|ZP_06851633.1| caax amino protease [Mycobacteri... 309 2e-82
gi|120405534|ref|YP_955363.1| abortive infection protein [Mycoba... 278 6e-73
gi|315443177|ref|YP_004076056.1| CAAX amino terminal protease fa... 274 1e-71
gi|145222711|ref|YP_001133389.1| abortive infection protein [Myc... 272 4e-71
gi|342861754|ref|ZP_08718400.1| caax amino protease [Mycobacteri... 268 8e-70
gi|118467420|ref|YP_889434.1| caax amino protease [Mycobacterium... 265 7e-69
gi|119870178|ref|YP_940130.1| abortive infection protein [Mycoba... 236 4e-60
gi|262203981|ref|YP_003275189.1| abortive infection protein [Gor... 213 2e-53
gi|333989760|ref|YP_004522374.1| hypothetical protein JDM601_112... 211 1e-52
gi|343924119|ref|ZP_08763682.1| hypothetical protein GOALK_002_0... 205 6e-51
gi|258655246|ref|YP_003204402.1| abortive infection protein [Nak... 201 1e-49
gi|108801036|ref|YP_641233.1| abortive infection protein [Mycoba... 191 9e-47
gi|326329045|ref|ZP_08195374.1| caax amino protease family prote... 181 8e-44
gi|284990483|ref|YP_003409037.1| abortive infection protein [Geo... 158 8e-37
gi|119718784|ref|YP_925749.1| abortive infection protein [Nocard... 156 4e-36
gi|336117973|ref|YP_004572741.1| hypothetical protein MLP_23240 ... 149 6e-34
gi|256824002|ref|YP_003147962.1| CAAX amino terminal protease fa... 144 1e-32
gi|84497737|ref|ZP_00996559.1| probable integral membrane protei... 140 2e-31
gi|317123323|ref|YP_004097435.1| hypothetical protein Intca_0147... 137 2e-30
gi|302524744|ref|ZP_07277086.1| predicted protein [Streptomyces ... 121 1e-25
gi|309812750|ref|ZP_07706489.1| CAAX amino terminal protease fam... 108 8e-22
gi|300787720|ref|YP_003768011.1| hypothetical protein AMED_5864 ... 107 1e-21
gi|54023159|ref|YP_117401.1| hypothetical protein nfa11920 [Noca... 106 4e-21
gi|336458773|gb|EGO37733.1| hypothetical protein MAPs_10570 [Myc... 94.4 2e-17
gi|184201768|ref|YP_001855975.1| hypothetical protein KRH_21220 ... 87.4 2e-15
gi|300781607|ref|ZP_07091461.1| conserved hypothetical protein [... 79.7 5e-13
gi|227548197|ref|ZP_03978246.1| abortive infection protein [Cory... 70.1 3e-10
gi|296394817|ref|YP_003659701.1| abortive infection protein [Seg... 68.2 1e-09
gi|172039751|ref|YP_001799465.1| hypothetical protein cur_0071 [... 55.5 9e-06
gi|94987200|ref|YP_595133.1| hypothetical protein LI0758 [Lawson... 47.8 0.002
gi|300857171|ref|YP_003782155.1| putative protease [Clostridium ... 47.4 0.002
gi|254877517|ref|ZP_05250227.1| predicted protein [Francisella p... 46.2 0.006
gi|189468024|ref|ZP_03016809.1| hypothetical protein BACINT_0441... 45.4 0.008
gi|296141952|ref|YP_003649194.1| Abortive infection protein [Tsu... 45.4 0.010
gi|317484208|ref|ZP_07943137.1| CAAX amino terminal protease [Bi... 43.5 0.032
gi|256367694|ref|YP_003108263.1| Tir [Escherichia coli] >gi|2284... 43.5 0.034
gi|345040165|gb|EGW44447.1| hypothetical protein HMPREF0178_0273... 43.5 0.035
gi|332346485|gb|AEE59818.1| putative transfer inhibition protein... 43.5 0.039
>gi|15608280|ref|NP_215656.1| integral membrane protein [Mycobacterium tuberculosis H37Rv]
gi|15840581|ref|NP_335618.1| hypothetical protein MT1173 [Mycobacterium tuberculosis CDC1551]
gi|31792335|ref|NP_854828.1| integral membrane protein [Mycobacterium bovis AF2122/97]
49 more sequence titles
Length=282
Score = 558 bits (1439), Expect = 3e-157, Method: Compositional matrix adjust.
Identities = 282/282 (100%), Positives = 282/282 (100%), Gaps = 0/282 (0%)
Query 1 MPRDYTAPRWAHAWAGEPRPARWHPANQPAHPDHSNRESPACMSQSTTPYRSSVLAEFRR 60
MPRDYTAPRWAHAWAGEPRPARWHPANQPAHPDHSNRESPACMSQSTTPYRSSVLAEFRR
Sbjct 1 MPRDYTAPRWAHAWAGEPRPARWHPANQPAHPDHSNRESPACMSQSTTPYRSSVLAEFRR 60
Query 61 AITNVAVPHHEPPGIVRRRRVVVGVTLVIGAVMLGFSLRRTPGESSFYWLTLALAAVWIA 120
AITNVAVPHHEPPGIVRRRRVVVGVTLVIGAVMLGFSLRRTPGESSFYWLTLALAAVWIA
Sbjct 61 AITNVAVPHHEPPGIVRRRRVVVGVTLVIGAVMLGFSLRRTPGESSFYWLTLALAAVWIA 120
Query 121 GALMSGPLHLGGICWRGRNQRPVITGTTVGLLLAGIFGVGAMIVRAIPGAAEPIARVLQF 180
GALMSGPLHLGGICWRGRNQRPVITGTTVGLLLAGIFGVGAMIVRAIPGAAEPIARVLQF
Sbjct 121 GALMSGPLHLGGICWRGRNQRPVITGTTVGLLLAGIFGVGAMIVRAIPGAAEPIARVLQF 180
Query 181 AHQGTLLPILLITLINGIAEEMFFRGALYTALGRRYPVTISTVLYVGATMASANLMLGFA 240
AHQGTLLPILLITLINGIAEEMFFRGALYTALGRRYPVTISTVLYVGATMASANLMLGFA
Sbjct 181 AHQGTLLPILLITLINGIAEEMFFRGALYTALGRRYPVTISTVLYVGATMASANLMLGFA 240
Query 241 AIFVGTVCALERRASGGVLAPILTHFVWGLIMVFALPPLFAV 282
AIFVGTVCALERRASGGVLAPILTHFVWGLIMVFALPPLFAV
Sbjct 241 AIFVGTVCALERRASGGVLAPILTHFVWGLIMVFALPPLFAV 282
>gi|289753207|ref|ZP_06512585.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289693794|gb|EFD61223.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
Length=282
Score = 557 bits (1435), Expect = 8e-157, Method: Compositional matrix adjust.
Identities = 281/282 (99%), Positives = 281/282 (99%), Gaps = 0/282 (0%)
Query 1 MPRDYTAPRWAHAWAGEPRPARWHPANQPAHPDHSNRESPACMSQSTTPYRSSVLAEFRR 60
MPRDYTAPRWAHAWAGEPRPARWHPANQPAHPDHSNRESPACMSQSTTPYRSSVLAEFRR
Sbjct 1 MPRDYTAPRWAHAWAGEPRPARWHPANQPAHPDHSNRESPACMSQSTTPYRSSVLAEFRR 60
Query 61 AITNVAVPHHEPPGIVRRRRVVVGVTLVIGAVMLGFSLRRTPGESSFYWLTLALAAVWIA 120
AITNVAVPHHEPPGIVRRRRVVVGVTLVIGAVMLGFSLRRTPGESSFYWL LALAAVWIA
Sbjct 61 AITNVAVPHHEPPGIVRRRRVVVGVTLVIGAVMLGFSLRRTPGESSFYWLALALAAVWIA 120
Query 121 GALMSGPLHLGGICWRGRNQRPVITGTTVGLLLAGIFGVGAMIVRAIPGAAEPIARVLQF 180
GALMSGPLHLGGICWRGRNQRPVITGTTVGLLLAGIFGVGAMIVRAIPGAAEPIARVLQF
Sbjct 121 GALMSGPLHLGGICWRGRNQRPVITGTTVGLLLAGIFGVGAMIVRAIPGAAEPIARVLQF 180
Query 181 AHQGTLLPILLITLINGIAEEMFFRGALYTALGRRYPVTISTVLYVGATMASANLMLGFA 240
AHQGTLLPILLITLINGIAEEMFFRGALYTALGRRYPVTISTVLYVGATMASANLMLGFA
Sbjct 181 AHQGTLLPILLITLINGIAEEMFFRGALYTALGRRYPVTISTVLYVGATMASANLMLGFA 240
Query 241 AIFVGTVCALERRASGGVLAPILTHFVWGLIMVFALPPLFAV 282
AIFVGTVCALERRASGGVLAPILTHFVWGLIMVFALPPLFAV
Sbjct 241 AIFVGTVCALERRASGGVLAPILTHFVWGLIMVFALPPLFAV 282
>gi|340626155|ref|YP_004744607.1| putative integral membrane protein [Mycobacterium canettii CIPT
140010059]
gi|340004345|emb|CCC43488.1| putative integral membrane protein [Mycobacterium canettii CIPT
140010059]
Length=282
Score = 556 bits (1433), Expect = 1e-156, Method: Compositional matrix adjust.
Identities = 280/282 (99%), Positives = 281/282 (99%), Gaps = 0/282 (0%)
Query 1 MPRDYTAPRWAHAWAGEPRPARWHPANQPAHPDHSNRESPACMSQSTTPYRSSVLAEFRR 60
MPRDYTAPRWAHAWAGEPRPARWHPANQPAHPDHSNRESPACMSQSTTPYRSSVLAEFRR
Sbjct 1 MPRDYTAPRWAHAWAGEPRPARWHPANQPAHPDHSNRESPACMSQSTTPYRSSVLAEFRR 60
Query 61 AITNVAVPHHEPPGIVRRRRVVVGVTLVIGAVMLGFSLRRTPGESSFYWLTLALAAVWIA 120
AITNVAVPHHEPPGIVRRRRVVVGVTLVIGAVMLGFSLRRTPGESSFYWLTLALA+VWIA
Sbjct 61 AITNVAVPHHEPPGIVRRRRVVVGVTLVIGAVMLGFSLRRTPGESSFYWLTLALASVWIA 120
Query 121 GALMSGPLHLGGICWRGRNQRPVITGTTVGLLLAGIFGVGAMIVRAIPGAAEPIARVLQF 180
GALMSGPLHLGGICWRGRNQRPVITGTTVGLLLAGIFGVGAMIVR IPGAAEPIARVLQF
Sbjct 121 GALMSGPLHLGGICWRGRNQRPVITGTTVGLLLAGIFGVGAMIVREIPGAAEPIARVLQF 180
Query 181 AHQGTLLPILLITLINGIAEEMFFRGALYTALGRRYPVTISTVLYVGATMASANLMLGFA 240
AHQGTLLPILLITLINGIAEEMFFRGALYTALGRRYPVTISTVLYVGATMASANLMLGFA
Sbjct 181 AHQGTLLPILLITLINGIAEEMFFRGALYTALGRRYPVTISTVLYVGATMASANLMLGFA 240
Query 241 AIFVGTVCALERRASGGVLAPILTHFVWGLIMVFALPPLFAV 282
AIFVGTVCALERRASGGVLAPILTHFVWGLIMVFALPPLFAV
Sbjct 241 AIFVGTVCALERRASGGVLAPILTHFVWGLIMVFALPPLFAV 282
>gi|289573795|ref|ZP_06454022.1| membrane protein [Mycobacterium tuberculosis K85]
gi|289538226|gb|EFD42804.1| membrane protein [Mycobacterium tuberculosis K85]
Length=282
Score = 556 bits (1433), Expect = 1e-156, Method: Compositional matrix adjust.
Identities = 281/282 (99%), Positives = 281/282 (99%), Gaps = 0/282 (0%)
Query 1 MPRDYTAPRWAHAWAGEPRPARWHPANQPAHPDHSNRESPACMSQSTTPYRSSVLAEFRR 60
MPRDYTAPRWAHAWAGEPRPARWHPANQPAHPDHSNRESPACMSQSTTPYRSSVLAEFRR
Sbjct 1 MPRDYTAPRWAHAWAGEPRPARWHPANQPAHPDHSNRESPACMSQSTTPYRSSVLAEFRR 60
Query 61 AITNVAVPHHEPPGIVRRRRVVVGVTLVIGAVMLGFSLRRTPGESSFYWLTLALAAVWIA 120
AITNVAVPHHEPPGIVRRRRVVVGVTLVIGAVMLGFSLRRTPGESSFYWLTLALAAVWIA
Sbjct 61 AITNVAVPHHEPPGIVRRRRVVVGVTLVIGAVMLGFSLRRTPGESSFYWLTLALAAVWIA 120
Query 121 GALMSGPLHLGGICWRGRNQRPVITGTTVGLLLAGIFGVGAMIVRAIPGAAEPIARVLQF 180
GALMSGPLHLGGICWRGRNQRPVITGTTVGLLLAGIF VGAMIVRAIPGAAEPIARVLQF
Sbjct 121 GALMSGPLHLGGICWRGRNQRPVITGTTVGLLLAGIFEVGAMIVRAIPGAAEPIARVLQF 180
Query 181 AHQGTLLPILLITLINGIAEEMFFRGALYTALGRRYPVTISTVLYVGATMASANLMLGFA 240
AHQGTLLPILLITLINGIAEEMFFRGALYTALGRRYPVTISTVLYVGATMASANLMLGFA
Sbjct 181 AHQGTLLPILLITLINGIAEEMFFRGALYTALGRRYPVTISTVLYVGATMASANLMLGFA 240
Query 241 AIFVGTVCALERRASGGVLAPILTHFVWGLIMVFALPPLFAV 282
AIFVGTVCALERRASGGVLAPILTHFVWGLIMVFALPPLFAV
Sbjct 241 AIFVGTVCALERRASGGVLAPILTHFVWGLIMVFALPPLFAV 282
>gi|254550139|ref|ZP_05140586.1| hypothetical protein Mtube_06724 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|294993324|ref|ZP_06799015.1| hypothetical protein Mtub2_02172 [Mycobacterium tuberculosis
210]
gi|297633681|ref|ZP_06951461.1| hypothetical protein MtubK4_06149 [Mycobacterium tuberculosis
KZN 4207]
21 more sequence titles
Length=240
Score = 464 bits (1193), Expect = 8e-129, Method: Compositional matrix adjust.
Identities = 240/240 (100%), Positives = 240/240 (100%), Gaps = 0/240 (0%)
Query 43 MSQSTTPYRSSVLAEFRRAITNVAVPHHEPPGIVRRRRVVVGVTLVIGAVMLGFSLRRTP 102
MSQSTTPYRSSVLAEFRRAITNVAVPHHEPPGIVRRRRVVVGVTLVIGAVMLGFSLRRTP
Sbjct 1 MSQSTTPYRSSVLAEFRRAITNVAVPHHEPPGIVRRRRVVVGVTLVIGAVMLGFSLRRTP 60
Query 103 GESSFYWLTLALAAVWIAGALMSGPLHLGGICWRGRNQRPVITGTTVGLLLAGIFGVGAM 162
GESSFYWLTLALAAVWIAGALMSGPLHLGGICWRGRNQRPVITGTTVGLLLAGIFGVGAM
Sbjct 61 GESSFYWLTLALAAVWIAGALMSGPLHLGGICWRGRNQRPVITGTTVGLLLAGIFGVGAM 120
Query 163 IVRAIPGAAEPIARVLQFAHQGTLLPILLITLINGIAEEMFFRGALYTALGRRYPVTIST 222
IVRAIPGAAEPIARVLQFAHQGTLLPILLITLINGIAEEMFFRGALYTALGRRYPVTIST
Sbjct 121 IVRAIPGAAEPIARVLQFAHQGTLLPILLITLINGIAEEMFFRGALYTALGRRYPVTIST 180
Query 223 VLYVGATMASANLMLGFAAIFVGTVCALERRASGGVLAPILTHFVWGLIMVFALPPLFAV 282
VLYVGATMASANLMLGFAAIFVGTVCALERRASGGVLAPILTHFVWGLIMVFALPPLFAV
Sbjct 181 VLYVGATMASANLMLGFAAIFVGTVCALERRASGGVLAPILTHFVWGLIMVFALPPLFAV 240
>gi|254820701|ref|ZP_05225702.1| hypothetical protein MintA_12281 [Mycobacterium intracellulare
ATCC 13950]
Length=240
Score = 347 bits (889), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 183/240 (77%), Positives = 205/240 (86%), Gaps = 0/240 (0%)
Query 43 MSQSTTPYRSSVLAEFRRAITNVAVPHHEPPGIVRRRRVVVGVTLVIGAVMLGFSLRRTP 102
MSQST PY SSV AE RRAITNVAVPHHE P +VRRRRV+V +TLV+GA +LG+SLRR P
Sbjct 1 MSQSTAPYHSSVFAELRRAITNVAVPHHESPSVVRRRRVIVAITLVVGAAVLGYSLRRHP 60
Query 103 GESSFYWLTLALAAVWIAGALMSGPLHLGGICWRGRNQRPVITGTTVGLLLAGIFGVGAM 162
GE+SFYWLTLALAAVW AGAL+SGPLHLGGICWRGRNQRPVITGTTVGLL+ G F VG +
Sbjct 61 GEASFYWLTLALAAVWTAGALVSGPLHLGGICWRGRNQRPVITGTTVGLLVGGAFVVGGL 120
Query 163 IVRAIPGAAEPIARVLQFAHQGTLLPILLITLINGIAEEMFFRGALYTALGRRYPVTIST 222
I R IP +E I RVL FAHQG+ L ++LIT+ING+AEE+FFRGALYTALGR +PV IST
Sbjct 121 IAREIPAVSELITRVLLFAHQGSFLLVVLITVINGVAEELFFRGALYTALGRYHPVLIST 180
Query 223 VLYVGATMASANLMLGFAAIFVGTVCALERRASGGVLAPILTHFVWGLIMVFALPPLFAV 282
+LY ATMAS N MLGFAAI +GTVCALERRASGGVLAP+LTH WGLIMV LPP+F V
Sbjct 181 LLYTAATMASGNPMLGFAAIILGTVCALERRASGGVLAPVLTHVGWGLIMVLVLPPMFGV 240
>gi|118616736|ref|YP_905068.1| integral membrane protein [Mycobacterium ulcerans Agy99]
gi|118568846|gb|ABL03597.1| integral membrane protein [Mycobacterium ulcerans Agy99]
Length=269
Score = 334 bits (857), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 189/269 (71%), Positives = 216/269 (81%), Gaps = 3/269 (1%)
Query 16 GEPRPARWHPA--NQPAHPDHSNRESPACMSQSTTPYRSSVLAEFRRAITNVAVPHHEPP 73
GE RP QP HPD + ES MSQST P S++ + RRAITNVAVPHHE P
Sbjct 2 GEHRPGSTGRCVTKQPRHPDRPDSESSVRMSQSTAPQFSAI-DDIRRAITNVAVPHHEAP 60
Query 74 GIVRRRRVVVGVTLVIGAVMLGFSLRRTPGESSFYWLTLALAAVWIAGALMSGPLHLGGI 133
+V RRR+VVGV LVIGAV++G S+RR PGE++FYWLTL LAAVW G+L SGPLHLGGI
Sbjct 61 SVVLRRRIVVGVVLVIGAVVMGLSMRRQPGEATFYWLTLTLAAVWALGSLASGPLHLGGI 120
Query 134 CWRGRNQRPVITGTTVGLLLAGIFGVGAMIVRAIPGAAEPIARVLQFAHQGTLLPILLIT 193
WRGRNQRPVITGTT+GLLL GIF +GA++VR IP A E I RVLQFA QG+L +++IT
Sbjct 121 RWRGRNQRPVITGTTIGLLLGGIFVLGALVVRKIPAATELIVRVLQFASQGSLFLVVVIT 180
Query 194 LINGIAEEMFFRGALYTALGRRYPVTISTVLYVGATMASANLMLGFAAIFVGTVCALERR 253
LINGIAEEMFFRGALYTALGR YPV +STV+Y+GA MASANLMLGFAA+ +G VCA ERR
Sbjct 181 LINGIAEEMFFRGALYTALGRFYPVAVSTVVYIGAIMASANLMLGFAAVILGGVCAWERR 240
Query 254 ASGGVLAPILTHFVWGLIMVFALPPLFAV 282
++GGVLAPILTH VWGLIMV ALPPLF V
Sbjct 241 STGGVLAPILTHLVWGLIMVLALPPLFGV 269
>gi|254774158|ref|ZP_05215674.1| caax amino protease family protein [Mycobacterium avium subsp.
avium ATCC 25291]
Length=240
Score = 333 bits (853), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 180/240 (75%), Positives = 201/240 (84%), Gaps = 0/240 (0%)
Query 43 MSQSTTPYRSSVLAEFRRAITNVAVPHHEPPGIVRRRRVVVGVTLVIGAVMLGFSLRRTP 102
MSQST+PY +SV AE RRAITNVAVPH+EPP IVRRRRVVV +TLV+GA +LG+SLRR P
Sbjct 1 MSQSTSPYHTSVFAELRRAITNVAVPHNEPPAIVRRRRVVVAITLVLGAAVLGYSLRRHP 60
Query 103 GESSFYWLTLALAAVWIAGALMSGPLHLGGICWRGRNQRPVITGTTVGLLLAGIFGVGAM 162
GESSFYWLTL LAAVW GAL SGPLHLGGICWRGRNQRPVITGTTVGLLL G F VG +
Sbjct 61 GESSFYWLTLGLAAVWTVGALSSGPLHLGGICWRGRNQRPVITGTTVGLLLGGAFVVGGL 120
Query 163 IVRAIPGAAEPIARVLQFAHQGTLLPILLITLINGIAEEMFFRGALYTALGRRYPVTIST 222
I R IP + I RVL FAH G L ++ IT+INGIAEE+FFRGALYTALGR +PV IST
Sbjct 121 IAREIPAVSALITRVLLFAHHGWLPLVVAITVINGIAEELFFRGALYTALGRYHPVLIST 180
Query 223 VLYVGATMASANLMLGFAAIFVGTVCALERRASGGVLAPILTHFVWGLIMVFALPPLFAV 282
+LY ATMA+ N MLGFAA+ +GTVCALERRASGGVLAP+LTH WGLIMV ALPP+F +
Sbjct 181 LLYTAATMAAGNPMLGFAAVILGTVCALERRASGGVLAPVLTHCGWGLIMVLALPPVFGL 240
>gi|41408738|ref|NP_961574.1| hypothetical protein MAP2640c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41397096|gb|AAS04957.1| hypothetical protein MAP_2640c [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=240
Score = 332 bits (852), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 180/240 (75%), Positives = 201/240 (84%), Gaps = 0/240 (0%)
Query 43 MSQSTTPYRSSVLAEFRRAITNVAVPHHEPPGIVRRRRVVVGVTLVIGAVMLGFSLRRTP 102
MSQST+PY +SV AE RRAITNVAVPH+EPP IVRRRRVVV +TLV+GA +LG+SLRR P
Sbjct 1 MSQSTSPYHTSVFAELRRAITNVAVPHNEPPTIVRRRRVVVAITLVLGAAVLGYSLRRHP 60
Query 103 GESSFYWLTLALAAVWIAGALMSGPLHLGGICWRGRNQRPVITGTTVGLLLAGIFGVGAM 162
GESSFYWLTL LAAVW GAL SGPLHLGGICWRGRNQRPVITGTTVGLLL G F VG +
Sbjct 61 GESSFYWLTLGLAAVWTVGALSSGPLHLGGICWRGRNQRPVITGTTVGLLLGGAFVVGGL 120
Query 163 IVRAIPGAAEPIARVLQFAHQGTLLPILLITLINGIAEEMFFRGALYTALGRRYPVTIST 222
I R IP + I RVL FAH G L ++ IT+INGIAEE+FFRGALYTALGR +PV IST
Sbjct 121 IAREIPAVSALITRVLLFAHHGWLPLVVAITVINGIAEELFFRGALYTALGRYHPVLIST 180
Query 223 VLYVGATMASANLMLGFAAIFVGTVCALERRASGGVLAPILTHFVWGLIMVFALPPLFAV 282
+LY ATMA+ N MLGFAA+ +GTVCALERRASGGVLAP+LTH WGLIMV ALPP+F +
Sbjct 181 LLYTAATMAAGNPMLGFAAVILGTVCALERRASGGVLAPVLTHCGWGLIMVLALPPVFGL 240
>gi|118465649|ref|YP_880527.1| caax amino protease [Mycobacterium avium 104]
gi|118166936|gb|ABK67833.1| caax amino protease family protein [Mycobacterium avium 104]
Length=240
Score = 332 bits (851), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 179/240 (75%), Positives = 201/240 (84%), Gaps = 0/240 (0%)
Query 43 MSQSTTPYRSSVLAEFRRAITNVAVPHHEPPGIVRRRRVVVGVTLVIGAVMLGFSLRRTP 102
MSQST+PY +SV AE RRAITNVAVPH+EPP IVRRRRVVV +TLV+GA +LG+SLRR P
Sbjct 1 MSQSTSPYHTSVFAELRRAITNVAVPHNEPPAIVRRRRVVVAITLVLGAAVLGYSLRRHP 60
Query 103 GESSFYWLTLALAAVWIAGALMSGPLHLGGICWRGRNQRPVITGTTVGLLLAGIFGVGAM 162
GESSFYWLTL LAAVW GAL SGPLHLGGICWRGRNQRPVITGTTVGLLL G F VG +
Sbjct 61 GESSFYWLTLGLAAVWTVGALSSGPLHLGGICWRGRNQRPVITGTTVGLLLGGAFVVGGL 120
Query 163 IVRAIPGAAEPIARVLQFAHQGTLLPILLITLINGIAEEMFFRGALYTALGRRYPVTIST 222
I R IP + I RVL +AH G L ++ IT+INGIAEE+FFRGALYTALGR +PV IST
Sbjct 121 IAREIPAVSALITRVLLYAHHGWLPLVVAITVINGIAEELFFRGALYTALGRYHPVLIST 180
Query 223 VLYVGATMASANLMLGFAAIFVGTVCALERRASGGVLAPILTHFVWGLIMVFALPPLFAV 282
+LY ATMA+ N MLGFAA+ +GTVCALERRASGGVLAP+LTH WGLIMV ALPP+F +
Sbjct 181 LLYTAATMAAGNPMLGFAAVILGTVCALERRASGGVLAPVLTHCGWGLIMVLALPPVFGL 240
>gi|183984281|ref|YP_001852572.1| integral membrane protein [Mycobacterium marinum M]
gi|183177607|gb|ACC42717.1| integral membrane protein [Mycobacterium marinum M]
Length=239
Score = 323 bits (827), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 181/240 (76%), Positives = 205/240 (86%), Gaps = 1/240 (0%)
Query 43 MSQSTTPYRSSVLAEFRRAITNVAVPHHEPPGIVRRRRVVVGVTLVIGAVMLGFSLRRTP 102
MSQST P S++ + RRAITNVAVPHHE P +V RRR+VVGV LVIGAV++G S+RR P
Sbjct 1 MSQSTAPQFSAI-DDIRRAITNVAVPHHEAPSVVLRRRIVVGVVLVIGAVVMGLSMRRQP 59
Query 103 GESSFYWLTLALAAVWIAGALMSGPLHLGGICWRGRNQRPVITGTTVGLLLAGIFGVGAM 162
GES+FYWLTL LAAVW GAL SGPLHLGGI WRGRNQRPVITGTT+GLLL GIF +GA+
Sbjct 60 GESTFYWLTLTLAAVWALGALASGPLHLGGIRWRGRNQRPVITGTTIGLLLGGIFVLGAL 119
Query 163 IVRAIPGAAEPIARVLQFAHQGTLLPILLITLINGIAEEMFFRGALYTALGRRYPVTIST 222
+VR IP AAE I RVLQFA QG+L +++ITLINGIAEEMFFRGALYTALGR YPV +ST
Sbjct 120 VVRKIPAAAELIVRVLQFASQGSLFLVVVITLINGIAEEMFFRGALYTALGRFYPVAVST 179
Query 223 VLYVGATMASANLMLGFAAIFVGTVCALERRASGGVLAPILTHFVWGLIMVFALPPLFAV 282
V+Y+GA MASANLMLGFAA+ +G VCA ERR++GGVLAPILTH VWGLIMV ALPPLF V
Sbjct 180 VVYIGAIMASANLMLGFAAVILGGVCAWERRSTGGVLAPILTHLVWGLIMVLALPPLFGV 239
>gi|240172484|ref|ZP_04751143.1| integral membrane protein [Mycobacterium kansasii ATCC 12478]
Length=220
Score = 314 bits (804), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 160/221 (73%), Positives = 186/221 (85%), Gaps = 1/221 (0%)
Query 62 ITNVAVPHHEPPGIVRRRRVVVGVTLVIGAVMLGFSLRRTPGESSFYWLTLALAAVWIAG 121
+TNVAVPHHEPP IV RRR+VVGV L+IGA +LG S+ R PGES+F+WLTL LA +W G
Sbjct 1 MTNVAVPHHEPPAIVLRRRIVVGVVLLIGAAVLGLSMSRRPGESTFHWLTLGLAVIWAVG 60
Query 122 ALMSGPLHLGGICWRGRNQRPVITGTTVGLLLAGIFGVGAMIVRAIPGAAEPIARVLQFA 181
AL SGPLHLGGICWRGRNQRPVITGTTVGL+L G+F +G ++ R IP ++ IARVL+FA
Sbjct 61 ALASGPLHLGGICWRGRNQRPVITGTTVGLVLGGVFVLGGLVTREIPAVSDLIARVLRFA 120
Query 182 HQGTLLPILLITLINGIAEEMFFRGALYTALGRRYPVTISTVLYVGATMASANLMLGFAA 241
G++L ++LITLINGIAEEMFFRGALYTALGR YPV +STV+YV A MA+ N MLGFAA
Sbjct 121 EHGSVL-VVLITLINGIAEEMFFRGALYTALGRFYPVLLSTVVYVAAIMATGNPMLGFAA 179
Query 242 IFVGTVCALERRASGGVLAPILTHFVWGLIMVFALPPLFAV 282
+ +GTVCA ERR +GGVLAPILTH VWGLIMV ALPPLF V
Sbjct 180 VILGTVCAWERRFTGGVLAPILTHAVWGLIMVLALPPLFGV 220
>gi|296170029|ref|ZP_06851633.1| caax amino protease [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295895297|gb|EFG75006.1| caax amino protease [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=240
Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 165/240 (69%), Positives = 195/240 (82%), Gaps = 0/240 (0%)
Query 43 MSQSTTPYRSSVLAEFRRAITNVAVPHHEPPGIVRRRRVVVGVTLVIGAVMLGFSLRRTP 102
MSQST P + VL+E+ RA+T VAVPHHE P +VRRRRV+V +T+V+GAV+LGFSLRR P
Sbjct 1 MSQSTAPSDTGVLSEWWRALTKVAVPHHESPAVVRRRRVIVAITVVLGAVVLGFSLRRHP 60
Query 103 GESSFYWLTLALAAVWIAGALMSGPLHLGGICWRGRNQRPVITGTTVGLLLAGIFGVGAM 162
G++SFYWLTLALA VW+AG SGPLHLGGICWRGRNQRPV+TG +GLLL +F +G +
Sbjct 61 GDASFYWLTLALAGVWVAGGFASGPLHLGGICWRGRNQRPVVTGAAIGLLLGAVFVIGGL 120
Query 163 IVRAIPGAAEPIARVLQFAHQGTLLPILLITLINGIAEEMFFRGALYTALGRRYPVTIST 222
I R I AE I RVL++AH G I+ ITL+NG+AEE+FFRGALYTALGR +PV IST
Sbjct 121 IAREITPVAELITRVLEYAHHGWYPVIVAITLVNGVAEEVFFRGALYTALGRFHPVLIST 180
Query 223 VLYVGATMASANLMLGFAAIFVGTVCALERRASGGVLAPILTHFVWGLIMVFALPPLFAV 282
VLY AT+AS N MLGFAAI +GTVCA ERRA+GGVLAP+LTH VWGLIMV LPP+F V
Sbjct 181 VLYTFATLASGNPMLGFAAIILGTVCAFERRATGGVLAPVLTHLVWGLIMVLVLPPMFGV 240
>gi|120405534|ref|YP_955363.1| abortive infection protein [Mycobacterium vanbaalenii PYR-1]
gi|119958352|gb|ABM15357.1| Abortive infection protein [Mycobacterium vanbaalenii PYR-1]
Length=236
Score = 278 bits (712), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 142/227 (63%), Positives = 177/227 (78%), Gaps = 1/227 (0%)
Query 57 EFRRAITNVAVPHHEPPGIVRRRRVVVGVTLVIGAVMLGFSLRRTPGESSFYWLTLALAA 116
E RR A P++EPP +V RR+++VGV L++GA +LG+SL R G+ +F WLTLALA
Sbjct 10 ELRRIARGKARPYNEPPSVVNRRKLIVGVVLLVGAALLGYSLSRPAGDETFIWLTLALAG 69
Query 117 VWIAGALMSGPLHLGGICWRGRNQRPVITGTTVGLLLAGIFGVGAMIVRAIPGAAEPIAR 176
VW AGA SGPLH+G +C+RGRNQRPVITGT +GL L IF VGA+IVR +PG + I R
Sbjct 70 VWAAGAFASGPLHMGHVCFRGRNQRPVITGTAIGLALGAIFVVGALIVREVPGLNDYITR 129
Query 177 VLQFAHQGTLLPILLITLINGIAEEMFFRGALYTALGRRYPVTISTVLYVGATMA-SANL 235
VL++++ G L I+ IT+ING+AEEMFFRGA+YTAL + +PV STVLYV AT A + N
Sbjct 130 VLEYSNTGPLWLIVFITVINGVAEEMFFRGAVYTALLKFHPVIFSTVLYVIATAATTGNP 189
Query 236 MLGFAAIFVGTVCALERRASGGVLAPILTHFVWGLIMVFALPPLFAV 282
MLGFAAI +GTVCA ERRA+GGVLAP+LTHF WGL+MV ALPP+F V
Sbjct 190 MLGFAAIILGTVCAFERRATGGVLAPMLTHFFWGLVMVLALPPIFGV 236
>gi|315443177|ref|YP_004076056.1| CAAX amino terminal protease family [Mycobacterium sp. Spyr1]
gi|315261480|gb|ADT98221.1| CAAX amino terminal protease family [Mycobacterium sp. Spyr1]
Length=236
Score = 274 bits (700), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 138/227 (61%), Positives = 176/227 (78%), Gaps = 1/227 (0%)
Query 57 EFRRAITNVAVPHHEPPGIVRRRRVVVGVTLVIGAVMLGFSLRRTPGESSFYWLTLALAA 116
E R+ + A P++EPP +V RR+V+V V L+IGA +LG+SL R PG+ +F WLTLALA
Sbjct 10 ELRKIASTKAPPYNEPPSVVGRRKVIVAVVLLIGAALLGYSLSRPPGDETFIWLTLALAG 69
Query 117 VWIAGALMSGPLHLGGICWRGRNQRPVITGTTVGLLLAGIFGVGAMIVRAIPGAAEPIAR 176
VW AGA SGPLH+G +C+RGRNQRPVITGT +GL L +F +GA++VR IPG + I
Sbjct 70 VWAAGAFASGPLHMGYVCFRGRNQRPVITGTAIGLGLGAVFVLGALVVREIPGVNDYIRA 129
Query 177 VLQFAHQGTLLPILLITLINGIAEEMFFRGALYTALGRRYPVTISTVLYVGATMA-SANL 235
VLQ+++ G L I+ IT+ING+AEEMFFRGA+YT+L + +PV +ST LYV AT A + N
Sbjct 130 VLQYSNAGPLYLIVFITVINGVAEEMFFRGAVYTSLLKFHPVIVSTALYVAATAATTGNP 189
Query 236 MLGFAAIFVGTVCALERRASGGVLAPILTHFVWGLIMVFALPPLFAV 282
MLGFAAI +GTVCA RRA+GGVLAP+LTHF WGL+MV ALPP+F V
Sbjct 190 MLGFAAIILGTVCAFLRRATGGVLAPMLTHFFWGLVMVLALPPMFGV 236
>gi|145222711|ref|YP_001133389.1| abortive infection protein [Mycobacterium gilvum PYR-GCK]
gi|145215197|gb|ABP44601.1| Abortive infection protein [Mycobacterium gilvum PYR-GCK]
Length=236
Score = 272 bits (695), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 138/227 (61%), Positives = 175/227 (78%), Gaps = 1/227 (0%)
Query 57 EFRRAITNVAVPHHEPPGIVRRRRVVVGVTLVIGAVMLGFSLRRTPGESSFYWLTLALAA 116
E R+ A P++EPP +V RR+V+V V L+IGA +LG+SL R PG+ +F WLTLALA
Sbjct 10 ELRKIAATKAPPYNEPPSVVGRRKVIVAVVLLIGAALLGYSLSRPPGDETFIWLTLALAG 69
Query 117 VWIAGALMSGPLHLGGICWRGRNQRPVITGTTVGLLLAGIFGVGAMIVRAIPGAAEPIAR 176
VW AGA SGPLH+G +C+RGRNQRPVITGT +GL L +F +GA++VR IPG + I
Sbjct 70 VWAAGAFASGPLHMGYVCFRGRNQRPVITGTAIGLGLGAVFVLGALVVREIPGVNDYIRA 129
Query 177 VLQFAHQGTLLPILLITLINGIAEEMFFRGALYTALGRRYPVTISTVLYVGATMA-SANL 235
VLQ+++ G L I+ IT+ING+AEEMFFRGA+YT+L + +PV +ST LYV AT A + N
Sbjct 130 VLQYSNAGPLYVIVFITVINGVAEEMFFRGAVYTSLLKFHPVIVSTALYVIATAATTGNP 189
Query 236 MLGFAAIFVGTVCALERRASGGVLAPILTHFVWGLIMVFALPPLFAV 282
MLGFAAI +GTVCA RRA+GGVLAP+LTHF WGL+MV ALPP+F V
Sbjct 190 MLGFAAIILGTVCAFLRRATGGVLAPMLTHFFWGLVMVLALPPMFGV 236
>gi|342861754|ref|ZP_08718400.1| caax amino protease [Mycobacterium colombiense CECT 3035]
gi|342130888|gb|EGT84184.1| caax amino protease [Mycobacterium colombiense CECT 3035]
Length=207
Score = 268 bits (684), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 148/207 (72%), Positives = 172/207 (84%), Gaps = 0/207 (0%)
Query 76 VRRRRVVVGVTLVIGAVMLGFSLRRTPGESSFYWLTLALAAVWIAGALMSGPLHLGGICW 135
+RRRRV+V +T+V+GA +LG SLRR PG++SFYWLTLALA VW AGA++SGPLHLGGICW
Sbjct 1 MRRRRVIVAITVVLGAAVLGLSLRRHPGDASFYWLTLALAGVWTAGAVISGPLHLGGICW 60
Query 136 RGRNQRPVITGTTVGLLLAGIFGVGAMIVRAIPGAAEPIARVLQFAHQGTLLPILLITLI 195
RGRNQRPVITGT +GLLL G+F VG +I R I AE I RVL +AH G I+ ITLI
Sbjct 61 RGRNQRPVITGTGIGLLLGGVFVVGGLIARQITPVAELITRVLLYAHHGWYPVIVAITLI 120
Query 196 NGIAEEMFFRGALYTALGRRYPVTISTVLYVGATMASANLMLGFAAIFVGTVCALERRAS 255
NG+AEE+FFRGALYTALGR +P+ ISTVLY AT+AS N MLGFAAI +GTVCA ERRA+
Sbjct 121 NGVAEEVFFRGALYTALGRYHPLVISTVLYTCATLASGNPMLGFAAIILGTVCAFERRAT 180
Query 256 GGVLAPILTHFVWGLIMVFALPPLFAV 282
GGVLAP+LTH VWGLIMV ALPP+F V
Sbjct 181 GGVLAPVLTHLVWGLIMVLALPPMFGV 207
>gi|118467420|ref|YP_889434.1| caax amino protease [Mycobacterium smegmatis str. MC2 155]
gi|118168707|gb|ABK69603.1| caax amino protease family protein [Mycobacterium smegmatis str.
MC2 155]
Length=227
Score = 265 bits (677), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 134/213 (63%), Positives = 167/213 (79%), Gaps = 0/213 (0%)
Query 70 HEPPGIVRRRRVVVGVTLVIGAVMLGFSLRRTPGESSFYWLTLALAAVWIAGALMSGPLH 129
HE P +RRRR+VV V L+IGA +LG+SL R+PG+ SF WLTL LAAVW GA +SGPLH
Sbjct 15 HEAPEQIRRRRIVVSVFLLIGAGLLGYSLTRSPGDGSFLWLTLVLAAVWAVGAFVSGPLH 74
Query 130 LGGICWRGRNQRPVITGTTVGLLLAGIFGVGAMIVRAIPGAAEPIARVLQFAHQGTLLPI 189
LG + RGR++RP + G VG+ LAG+F VGA+I R IPG E I RVL+F++ G L I
Sbjct 75 LGYLHVRGRDRRPALAGAVVGITLAGVFVVGALIAREIPGIREFITRVLEFSNTGPLALI 134
Query 190 LLITLINGIAEEMFFRGALYTALGRRYPVTISTVLYVGATMASANLMLGFAAIFVGTVCA 249
+ IT+ING+AEE+FFRGALY+ALG+ YPV +ST++Y+ TMAS N MLGFAAI +G VCA
Sbjct 135 VFITVINGVAEELFFRGALYSALGKFYPVVVSTLIYIVTTMASGNPMLGFAAIILGAVCA 194
Query 250 LERRASGGVLAPILTHFVWGLIMVFALPPLFAV 282
+ERR +GGVLAP+LTHF WGL MV ALPP+F V
Sbjct 195 MERRVTGGVLAPMLTHFFWGLAMVLALPPIFGV 227
>gi|119870178|ref|YP_940130.1| abortive infection protein [Mycobacterium sp. KMS]
gi|126436873|ref|YP_001072564.1| abortive infection protein [Mycobacterium sp. JLS]
gi|119696267|gb|ABL93340.1| Abortive infection protein [Mycobacterium sp. KMS]
gi|126236673|gb|ABO00074.1| Abortive infection protein [Mycobacterium sp. JLS]
Length=253
Score = 236 bits (601), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 137/254 (54%), Positives = 177/254 (70%), Gaps = 8/254 (3%)
Query 34 HSNRESPACMSQSTTPYRSSVLAEFRRAITNVAVPHHEPPGIVRRRRVVVGVTLVIGAVM 93
++R SP + + R+ L E R + +VA P E P ++RRRR++V + +VIG +
Sbjct 3 ETDRSSP---TPAPCDERTGFLREARGVVMSVAAPAGEWPAVIRRRRIIVAIFVVIGFGL 59
Query 94 LGFSLRRTPGESSFYWLTLALAAVWIAGALMSGPLHLGGICWRGRNQRPVITGTTVGLLL 153
LG+SL PG+ FYW T LA W AGA +SGPLHLG IC+R RNQRPVITGT VGL L
Sbjct 60 LGYSLSIPPGDPDFYWFTAGLAVFWTAGAFLSGPLHLGRICYRSRNQRPVITGTVVGLAL 119
Query 154 AGIFGVGAMIVRAIPGAAEPIARVLQFAHQGTLLPILLITLINGIAEEMFFRGALYTALG 213
G F V A++ R IP AE RVL+ A+QG L +++IT++NG+AEE+FFRGALYT+LG
Sbjct 120 GGAFVVAALVAREIPLMAEYAVRVLEHANQGALWLVVVITVVNGLAEELFFRGALYTSLG 179
Query 214 RR----YPVTISTVLYVGAT-MASANLMLGFAAIFVGTVCALERRASGGVLAPILTHFVW 268
R + V ST +YV T +++ N ML AAI +GTVCALERRA+GGVLAP+LTHF W
Sbjct 180 NRWNGWWAVLWSTAVYVVVTGVSTQNFMLAIAAIVLGTVCALERRATGGVLAPMLTHFFW 239
Query 269 GLIMVFALPPLFAV 282
GL+MV ALPP+F V
Sbjct 240 GLVMVLALPPIFGV 253
>gi|262203981|ref|YP_003275189.1| abortive infection protein [Gordonia bronchialis DSM 43247]
gi|262087328|gb|ACY23296.1| Abortive infection protein [Gordonia bronchialis DSM 43247]
Length=234
Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/218 (55%), Positives = 149/218 (69%), Gaps = 10/218 (4%)
Query 70 HEPPGIVRRRRVVVGVTLVIGAVMLGFSLRRTPGESSFYWLTLALAAVWIAGALMSGPLH 129
+ P RRRR+VV V L+ GAV+LGFSL PG+SSFY LT ALAA WI G L SGP+
Sbjct 21 DDDPRQSRRRRIVVAVFLIAGAVILGFSLTAQPGDSSFYPLTAALAATWIVGGLASGPIR 80
Query 130 LGGICWRGRNQRP------VITGTTVGLLLAGIFGVGAMIVRAIPGAAEPIARVLQFAHQ 183
LG RG V+TG VGL +F VGA+I R IP ++ + +VL F+ Q
Sbjct 81 LGHFALRGTRTASDAAVFGVLTGAAVGL----VFIVGALITREIPALSDLVNKVLAFSDQ 136
Query 184 GTLLPILLITLINGIAEEMFFRGALYTALGRRYPVTISTVLYVGATMASANLMLGFAAIF 243
G+++ I +ITL NG+AEE+FFRGA+Y+A P+ +ST+LYV AT+AS N MLGFAAI
Sbjct 137 GSIIVITVITLGNGLAEEVFFRGAVYSAAQHHRPIVVSTILYVIATLASGNPMLGFAAII 196
Query 244 VGTVCALERRASGGVLAPILTHFVWGLIMVFALPPLFA 281
+G VCAL RR++ GVLAPI H VWG I++F LPPLFA
Sbjct 197 LGAVCALLRRSTDGVLAPICCHVVWGAIVLFGLPPLFA 234
>gi|333989760|ref|YP_004522374.1| hypothetical protein JDM601_1120 [Mycobacterium sp. JDM601]
gi|333485728|gb|AEF35120.1| integral membrane protein [Mycobacterium sp. JDM601]
Length=239
Score = 211 bits (536), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 122/238 (52%), Positives = 178/238 (75%), Gaps = 1/238 (0%)
Query 43 MSQSTTPYRSSVLAEFRRAITNVAVPHHEPPGIVRRRRVVVGVTLVIGAVMLGFSLRRTP 102
M+Q+++ R +L EF ++ V+ P+HE +V+RRRVVV V +++GA +L F + P
Sbjct 1 MTQTSSA-RPGLLREFTDILSKVSAPYHESRAVVQRRRVVVAVVVLLGAAVLAFMHTKNP 59
Query 103 GESSFYWLTLALAAVWIAGALMSGPLHLGGICWRGRNQRPVITGTTVGLLLAGIFGVGAM 162
G+++FY L+LALA +W GA+++GPLHLG + +RGRN+RPV TGT VGL+L G+F + +
Sbjct 60 GDAAFYQLSLALAVIWAVGAVVAGPLHLGAVRFRGRNERPVFTGTGVGLVLGGVFLLAGL 119
Query 163 IVRAIPGAAEPIARVLQFAHQGTLLPILLITLINGIAEEMFFRGALYTALGRRYPVTIST 222
+V+ IP A+ + +L + + ++LI ++N IAEEMFFRGAL++A GRRYP+ ST
Sbjct 120 VVQQIPPLADQVIAILDYTTHVSWRLVVLIAIVNAIAEEMFFRGALFSAFGRRYPLVFST 179
Query 223 VLYVGATMASANLMLGFAAIFVGTVCALERRASGGVLAPILTHFVWGLIMVFALPPLF 280
+LY+ A MA+ NLM+G AA+ +GTVCA+ERRA+GGVLAP+LTH VWGL+MV ALP +F
Sbjct 180 LLYIAAMMAAGNLMIGVAALVLGTVCAIERRATGGVLAPVLTHLVWGLVMVLALPSIF 237
>gi|343924119|ref|ZP_08763682.1| hypothetical protein GOALK_002_00730 [Gordonia alkanivorans NBRC
16433]
gi|343765924|dbj|GAA10608.1| hypothetical protein GOALK_002_00730 [Gordonia alkanivorans NBRC
16433]
Length=233
Score = 205 bits (522), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 118/230 (52%), Positives = 154/230 (67%), Gaps = 9/230 (3%)
Query 59 RRAITNVAVPHHEPPGI-VRRRRVVVGVTLVIGAVMLGFSLRRTPGESSFYWLTLALAAV 117
R ++A+ PG RRR +VGV LVIGAVMLG SLR PG+++FY LT+ LA V
Sbjct 6 RDLYNSIALDRDPDPGFHYVRRRWLVGVFLVIGAVMLGISLRVEPGDTAFYPLTVGLAVV 65
Query 118 WIAGALMSGPLHLGGICWRGRNQRP------VITGTTVGLLLAGIFGVGAMIVRAIPGAA 171
WI GA +SGPL LG + + RP + GT VGL + F VG +I R IPG +
Sbjct 66 WILGAFVSGPLRLG--AYSPISSRPPDRLGAIGLGTAVGLAVGAAFVVGGLIARMIPGVS 123
Query 172 EPIARVLQFAHQGTLLPILLITLINGIAEEMFFRGALYTALGRRYPVTISTVLYVGATMA 231
+ +VL FA G+L + LIT++NG+AEE+FFRG++Y+A PV +STV+YV TMA
Sbjct 124 DLANQVLAFADYGSLAIVTLITVVNGLAEELFFRGSVYSAARPHNPVLVSTVIYVLVTMA 183
Query 232 SANLMLGFAAIFVGTVCALERRASGGVLAPILTHFVWGLIMVFALPPLFA 281
S N+MLGFA +GTVCA+ RR++ GVLAP +TH +WG IMV ALPP+FA
Sbjct 184 SGNVMLGFAGAVLGTVCAILRRSTAGVLAPAITHVIWGAIMVLALPPIFA 233
>gi|258655246|ref|YP_003204402.1| abortive infection protein [Nakamurella multipartita DSM 44233]
gi|258558471|gb|ACV81413.1| Abortive infection protein [Nakamurella multipartita DSM 44233]
Length=239
Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 112/213 (53%), Positives = 145/213 (69%), Gaps = 0/213 (0%)
Query 69 HHEPPGIVRRRRVVVGVTLVIGAVMLGFSLRRTPGESSFYWLTLALAAVWIAGALMSGPL 128
H +P RRRRVVV +TLV+GA +LG SL PG + FY LT ALAA W+ G SGPL
Sbjct 24 HRQPDHEFRRRRVVVAITLVVGATLLGVSLNVPPGSTVFYVLTFALAATWVVGGFASGPL 83
Query 129 HLGGICWRGRNQRPVITGTTVGLLLAGIFGVGAMIVRAIPGAAEPIARVLQFAHQGTLLP 188
HLG I ++G +RP+I +GL +A +F VGA++VR I E VL FA G+L
Sbjct 84 HLGRIQYKGELRRPIIVPILLGLAVAALFIVGAVVVREIAPLREMTEDVLAFARYGSLPL 143
Query 189 ILLITLINGIAEEMFFRGALYTALGRRYPVTISTVLYVGATMASANLMLGFAAIFVGTVC 248
+ +ITL+NGIAEE+FFRGAL+ A+G +PV IST +Y T+A+ N ML FAA+ +G +
Sbjct 144 VAVITLVNGIAEEIFFRGALFAAIGVWHPVAISTTVYALTTVATGNPMLVFAAVLLGLLL 203
Query 249 ALERRASGGVLAPILTHFVWGLIMVFALPPLFA 281
L+RRASGG+L PILTH W L M+ LPP+FA
Sbjct 204 GLQRRASGGILGPILTHCTWSLTMLLVLPPVFA 236
>gi|108801036|ref|YP_641233.1| abortive infection protein [Mycobacterium sp. MCS]
gi|108771455|gb|ABG10177.1| Abortive infection protein [Mycobacterium sp. MCS]
Length=742
Score = 191 bits (486), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 118/233 (51%), Positives = 155/233 (67%), Gaps = 8/233 (3%)
Query 35 SNRESPACMSQSTTPYRSSVLAEFRRAITNVAVPHHEPPGIVRRRRVVVGVTLVIGAVML 94
++R SP + + R+ L E R + +VA P E P ++RRRR++V + +VIG +L
Sbjct 4 TDRSSP---TPAPCDERTGFLREARGVVMSVAAPAGEWPAVIRRRRIIVAIFVVIGFGLL 60
Query 95 GFSLRRTPGESSFYWLTLALAAVWIAGALMSGPLHLGGICWRGRNQRPVITGTTVGLLLA 154
G+SL PG+ FYW T LA W AGA +SGPLHLG IC+R RNQRPVITGT VGL L
Sbjct 61 GYSLSIPPGDPDFYWFTAGLAVFWTAGAFLSGPLHLGRICYRSRNQRPVITGTVVGLALG 120
Query 155 GIFGVGAMIVRAIPGAAEPIARVLQFAHQGTLLPILLITLINGIAEEMFFRGALYTALGR 214
G F V A++ R IP AE RVL+ A+QG L +++IT++NG+AEE+FFRGALYT+LG
Sbjct 121 GAFVVAALVAREIPLMAEYAVRVLEHANQGALWLVVVITVVNGLAEELFFRGALYTSLGN 180
Query 215 RYP----VTISTVLYVGAT-MASANLMLGFAAIFVGTVCALERRASGGVLAPI 262
R+ V ST +YV T +++ N ML AAI +GTVCALERRA+G P
Sbjct 181 RWNGWWAVLWSTAVYVVVTGVSTQNFMLAIAAIVLGTVCALERRATGECSHPC 233
>gi|326329045|ref|ZP_08195374.1| caax amino protease family protein [Nocardioidaceae bacterium
Broad-1]
gi|325953127|gb|EGD45138.1| caax amino protease family protein [Nocardioidaceae bacterium
Broad-1]
Length=236
Score = 181 bits (460), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 112/220 (51%), Positives = 145/220 (66%), Gaps = 12/220 (5%)
Query 59 RRAITNVAVP--HHEPPGIVRRRRVVVGVTLVIGAVMLGFSLRRTPGESSFYWLTLALAA 116
RR++ +V VP H + +RRR++V +++GAV+LG SLR PG FY T ALA
Sbjct 6 RRSLWDV-VPRDHRQSDAALRRRQLVTAGFVLLGAVVLGVSLRIEPGSVWFYPATFALAG 64
Query 117 VWIAGALMSGPLHLGGI-CWRGRNQ-------RPVITGTTVGLLLAGIFGVGAMIVRAIP 168
VW GA +SGPLHLG I WR + RPV+ +GL LAGIF +G ++VR I
Sbjct 65 VWALGAFVSGPLHLGRIPAWRRHERKGEHRLVRPVLAPILIGLGLAGIFVIGGVVVREID 124
Query 169 GAAEPIARVLQFAHQGTLLPILLITLINGIAEEMFFRGALYTALGRRYPVTISTVLYVGA 228
+ VL FA QG+L ++++T +NG+AEE+FFRGALY AL R +PV S+V YV A
Sbjct 125 WLDRQVRSVLDFADQGSLPILVVVTAVNGVAEELFFRGALYAALPR-HPVAWSSVAYVIA 183
Query 229 TMASANLMLGFAAIFVGTVCALERRASGGVLAPILTHFVW 268
T+A+ N+ML FAAI +G V LERRASGGVLAPILTH W
Sbjct 184 TLATGNVMLTFAAILLGVVVGLERRASGGVLAPILTHCAW 223
>gi|284990483|ref|YP_003409037.1| abortive infection protein [Geodermatophilus obscurus DSM 43160]
gi|284063728|gb|ADB74666.1| Abortive infection protein [Geodermatophilus obscurus DSM 43160]
Length=254
Score = 158 bits (400), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 93/214 (44%), Positives = 126/214 (59%), Gaps = 1/214 (0%)
Query 69 HHEPPGIVRRRRVVVGVTLVIGAVMLGFSLRRTPGESSFYWLTLALAAVWIAGALMSGPL 128
H E G RRRR V V GA +LG SL PG +FY LT+A+A W+AG L SGPL
Sbjct 28 HRETDGAFRRRRRVTAGVAVGGAGLLGVSLSTRPGSPTFYGLTMAVAGTWVAGGLASGPL 87
Query 129 HLGGICWRGRN-QRPVITGTTVGLLLAGIFGVGAMIVRAIPGAAEPIARVLQFAHQGTLL 187
HLG + +RPV+T G+ F A++ R IP + RVL++A QG+
Sbjct 88 HLGWMLTPDHQLRRPVVTPVITGVGAFYAFYGAALVARRIPVLDRAVTRVLRYAQQGSTP 147
Query 188 PILLITLINGIAEEMFFRGALYTALGRRYPVTISTVLYVGATMASANLMLGFAAIFVGTV 247
+ L NG+AEE+FFRGALY A+G PV +ST +Y AT A+ N L A++ +G +
Sbjct 148 LVATTALANGVAEEVFFRGALYAAIGVDRPVIVSTAVYGLATAATRNPALLLASLVMGAL 207
Query 248 CALERRASGGVLAPILTHFVWGLIMVFALPPLFA 281
++RR +GG+ A +LTH W +M+ LPPLFA
Sbjct 208 FGMQRRVTGGIQASVLTHVTWSALMLRFLPPLFA 241
>gi|119718784|ref|YP_925749.1| abortive infection protein [Nocardioides sp. JS614]
gi|119539445|gb|ABL84062.1| Abortive infection protein [Nocardioides sp. JS614]
Length=233
Score = 156 bits (394), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 111/230 (49%), Positives = 147/230 (64%), Gaps = 8/230 (3%)
Query 58 FRRAITN-VAVPHHEPPGIVRRRRVVVGVTLVIGAVMLGFSLRRTPGESSFYWLTLALAA 116
RRA+ V H +R R++V +V+G V+LG SLR PG + FY TLALA+
Sbjct 5 LRRALWEMVPRDHRATRAALRHRQLVTAGFVVLGGVVLGLSLRIEPGSAWFYPATLALAS 64
Query 117 VWIAGALMSGPLHLGGICW------RGRNQRPVITGTTVGLLLAGIFGVGAMIVRAIPGA 170
VW GA SGPLHLG I +RPV+T +G+ LAG+F VGA++VR +P
Sbjct 65 VWAVGAFASGPLHLGRIATGAAADSDAVGRRPVLTPIALGIALAGVFVVGALVVRQVPFL 124
Query 171 AEPIARVLQFAHQGTLLPILLITLINGIAEEMFFRGALYTALGRRYPVTISTVLYVGATM 230
+ + V+ A QG ++LIT NGIAEE+FFRGA Y A+ R +PV ++T+ Y AT+
Sbjct 125 DDQVRSVVDHADQGAWPLLVLITAANGIAEELFFRGAAYAAIPR-HPVVLTTIAYAVATL 183
Query 231 ASANLMLGFAAIFVGTVCALERRASGGVLAPILTHFVWGLIMVFALPPLF 280
A+ N+ML FAA+ +G + LERRASGG+LAPILTH W L M+FALP LF
Sbjct 184 ATGNVMLAFAALLLGALVGLERRASGGILAPILTHCTWSLTMLFALPLLF 233
>gi|336117973|ref|YP_004572741.1| hypothetical protein MLP_23240 [Microlunatus phosphovorus NM-1]
gi|334685753|dbj|BAK35338.1| hypothetical protein MLP_23240 [Microlunatus phosphovorus NM-1]
Length=255
Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 85/205 (42%), Positives = 122/205 (60%), Gaps = 1/205 (0%)
Query 69 HHEPPGIVRRRRVVVGVTLVIGAVMLGFSLRRTPGESSFYWLTLALAAVWIAGALMSGPL 128
+ E P RR +VV T+V+G + LG +L PG+ FY +L +A VWI GAL+SGPL
Sbjct 39 YDETPAQRLRRLIVVAATVVLGTIALGLALAIPPGDPRFYLASLGVAGVWIVGALVSGPL 98
Query 129 HLG-GICWRGRNQRPVITGTTVGLLLAGIFGVGAMIVRAIPGAAEPIARVLQFAHQGTLL 187
HLG G G R V+ G +G +L +F GA ++ IP P+ ++L G+L
Sbjct 99 HLGRGRTRAGTTSRGVLQGFILGAMLLAVFLAGAFVIARIPLLRTPVEQLLDHVRHGSLG 158
Query 188 PILLITLINGIAEEMFFRGALYTALGRRYPVTISTVLYVGATMASANLMLGFAAIFVGTV 247
+ L+T++ GIAEE+FFRGA++ A RR+ + STV Y +T+ S +L FAA +G +
Sbjct 159 LVALVTVVGGIAEELFFRGAVFAAFSRRFNLVGSTVSYAASTLFSGVPLLTFAAACLGLL 218
Query 248 CALERRASGGVLAPILTHFVWGLIM 272
A +RR +GGV PI +H W L M
Sbjct 219 TAAQRRVTGGVAGPITSHLTWSLGM 243
>gi|256824002|ref|YP_003147962.1| CAAX amino terminal protease family protein [Kytococcus sedentarius
DSM 20547]
gi|256687395|gb|ACV05197.1| CAAX amino terminal protease family [Kytococcus sedentarius DSM
20547]
Length=244
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 97/224 (44%), Positives = 134/224 (60%), Gaps = 6/224 (2%)
Query 56 AEFRRAITNVAVPHHEPPGIVRRRRVVVGVTLVIGAVMLGFSLRRTPGESSFYWLTLALA 115
A+F R + H P +RRR+VVV +TL++G V L +SLR PG +SFY ALA
Sbjct 18 AQFVRQVPR---DHRADPRQLRRRQVVVALTLLVGTVFLAWSLRSEPGSASFYGAATALA 74
Query 116 AVWIAGALMSGPLHLGGICWR--GRNQRPVITGTTVGLLLAGIFGVGAMIVRAIPGAAEP 173
W AG+ SGPLHLG R R RPV+ V L + +F VGA++ IP +
Sbjct 75 ITWTAGSFASGPLHLGWAHTRSGDRYVRPVLQPVLVALGVIALFMVGALVAARIPVLSAS 134
Query 174 IARVLQFAHQGTLLPILLITLINGIAEEMFFRGALYTALGRRYPVTISTVLYVGATMASA 233
+ VL A G L ++ + L+NG+AEE+FFRGA+Y+A R PV ++TV+Y T+A+
Sbjct 135 VDAVLDHARLGILPLVVALALVNGVAEELFFRGAMYSATPWR-PVLVTTVVYTLTTIATG 193
Query 234 NLMLGFAAIFVGTVCALERRASGGVLAPILTHFVWGLIMVFALP 277
+L L AA +G V L+RR +GG+LAP+L H W L M+ LP
Sbjct 194 SLGLVLAAAVLGWVVGLQRRVTGGILAPVLIHCTWSLGMLLVLP 237
>gi|84497737|ref|ZP_00996559.1| probable integral membrane protein [Janibacter sp. HTCC2649]
gi|84382625|gb|EAP98507.1| probable integral membrane protein [Janibacter sp. HTCC2649]
Length=241
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 101/231 (44%), Positives = 143/231 (62%), Gaps = 4/231 (1%)
Query 55 LAEFRRA--ITNVAVPHHEPPGIVRRRRVVVGVTLVIGAVMLGFSLRRTPGESSFYWLTL 112
L F RA + V H E +RRR++ VTLV+G V+ ++LR PG+ FY T
Sbjct 8 LQRFFRAALVVPVTRDHTESDRAFKRRRLIAVVTLVVGLVLNAWALRIPPGDGLFYIATF 67
Query 113 ALAAVWIAGALMSGPLHLGGICWRGRNQRP--VITGTTVGLLLAGIFGVGAMIVRAIPGA 170
ALAAVW GA +SGPLHLG R ++R V+ +GLLL +F VGA++V IP
Sbjct 68 ALAAVWAGGAFLSGPLHLGRAHTRSGSERSRSVVQSLVLGLLLLALFLVGALVVARIPVL 127
Query 171 AEPIARVLQFAHQGTLLPILLITLINGIAEEMFFRGALYTALGRRYPVTISTVLYVGATM 230
EP+ +L A G+L + +IT +NG+AEE+F+RGAL+ A+GRR+ V ++T++Y
Sbjct 128 REPVDGLLDHARFGSLPVVAVITAVNGVAEELFYRGALFAAVGRRHAVLVTTIVYAVVCA 187
Query 231 ASANLMLGFAAIFVGTVCALERRASGGVLAPILTHFVWGLIMVFALPPLFA 281
A+ +L AA+ VG V L+RR +GG+L PI+TH W L M+F LP + A
Sbjct 188 AAGVPLLVLAAVLVGIVVGLQRRVTGGILGPIVTHLTWSLGMLFLLPHVLA 238
>gi|317123323|ref|YP_004097435.1| hypothetical protein Intca_0147 [Intrasporangium calvum DSM 43043]
gi|315587411|gb|ADU46708.1| Abortive infection protein [Intrasporangium calvum DSM 43043]
Length=239
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/199 (48%), Positives = 132/199 (67%), Gaps = 2/199 (1%)
Query 71 EPPGIVRRRRVVVGVTLVIGAVMLGFSLRRTPGESSFYWLTLALAAVWIAGALMSGPLHL 130
+PP + RRRVVV ++LV+GA +L ++LR PG++ FY TL LA VW GA++SGPL L
Sbjct 26 DPPEMRLRRRVVVALSLVVGAALLAWALRIRPGDALFYAATLGLAGVWCLGAVLSGPLRL 85
Query 131 G-GICWRGRNQRPVITGTTVGLLLAGIFGVGAMIVRAIPGAAEPIARVLQFAHQGTLLPI 189
G G RG +RPV+ +G LL G F GA++V IP P+ +L A G+L +
Sbjct 86 GLGHTRRGARERPVLQSLALGGLLLGAFLAGALVVARIPVLRAPVDDLLDHARFGSLPVV 145
Query 190 LLITLINGIAEEMFFRGALYTALGRRYPVTISTVLYVGATMASANLMLGFAAIFVGTVCA 249
L IT++NGIAEE++FRGALY AL ++ V ++TVLY T+ S +L AA+ VG V A
Sbjct 146 LGITVLNGIAEELYFRGALYAALP-KHAVAVTTVLYALTTVGSGVPLLVLAAVVVGLVTA 204
Query 250 LERRASGGVLAPILTHFVW 268
L+RR +GG+L P++TH W
Sbjct 205 LQRRVTGGILGPVITHVTW 223
>gi|302524744|ref|ZP_07277086.1| predicted protein [Streptomyces sp. AA4]
gi|302433639|gb|EFL05455.1| predicted protein [Streptomyces sp. AA4]
Length=205
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/191 (43%), Positives = 107/191 (57%), Gaps = 12/191 (6%)
Query 90 GAVMLGFSLRRTPGESSFYWLTLALAAVWIAGALMSGPLHLGGICWRGRNQRPVITGTTV 149
G+ +LG SL PG F+ LT ++AA W AGA +GP+ RGR V+ V
Sbjct 15 GSGLLGASLASKPGSRRFHALTASVAATWFAGARAAGPVS------RGRPD--VVQPALV 66
Query 150 GLLLAGIFGVGAMIVRAIPGAAEPIARVLQFAHQGTLLPILLITLINGIAEEMFFRGALY 209
G G+F GA++ R IP I VL AH G+ ++ L+ G AEE+FFRGALY
Sbjct 67 GAGAFGVFYGGALVARRIPLLRRAITGVLGHAHHGSTPTVVTTALVTGAAEEVFFRGALY 126
Query 210 TALGRRYPVTISTVLYVGATMASANLMLGFAAIFVGTVCALERRASGGVLAPILTHFVWG 269
A G R STVLYV +T A+ N L A+ +GT+ L+RR GGV AP+LTH W
Sbjct 127 DAFGARD----STVLYVASTTATRNPALVLASAAMGTLFTLQRRWGGGVQAPMLTHVTWS 182
Query 270 LIMVFALPPLF 280
+M+ LP LF
Sbjct 183 ALMIGFLPRLF 193
>gi|309812750|ref|ZP_07706489.1| CAAX amino terminal protease family protein [Dermacoccus sp.
Ellin185]
gi|308433267|gb|EFP57160.1| CAAX amino terminal protease family protein [Dermacoccus sp.
Ellin185]
Length=240
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 81/221 (37%), Positives = 123/221 (56%), Gaps = 6/221 (2%)
Query 57 EFRRAITNVAVPHHEPPGIVRRRRVVVGVTLVIGAVMLGFSLRRTPGESSFYWLTLALAA 116
E R A T+ VP H + RV++G T V AV L +SL PG++ FY T +A
Sbjct 23 ELRDAATD-PVPEHR----LGATRVIIGATGVAAAVALSWSLNLEPGQALFYPATFLVAV 77
Query 117 VWIAGALMSGPLHLGGICWRGRNQRPVITGTTVGLLLAGIFGVGAMIVRAIPGAAEPIAR 176
++ AG +G + + WR + R ++ +G+ LA +F VGA +VR IP +P++
Sbjct 78 IYGAGIFAAGRVGATRLRWRA-DGRELLEAFGIGIALALLFVVGAFLVRFIPALRDPVSH 136
Query 177 VLQFAHQGTLLPILLITLINGIAEEMFFRGALYTALGRRYPVTISTVLYVGATMASANLM 236
+L A +G+L + L T +NGIAEE+F+R L+ L R V +TV Y T + +
Sbjct 137 LLDHARKGSLPIVALTTAVNGIAEEVFYRDGLWRVLSPRKRVLWTTVAYTAVTALTGIPL 196
Query 237 LGFAAIFVGTVCALERRASGGVLAPILTHFVWGLIMVFALP 277
L AA +G V A+ R+ SG + PI+TH W ++M+F LP
Sbjct 197 LALAAAMLGFVVAVLRQQSGSLAGPIVTHLTWSMLMLFVLP 237
>gi|300787720|ref|YP_003768011.1| hypothetical protein AMED_5864 [Amycolatopsis mediterranei U32]
gi|299797234|gb|ADJ47609.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
gi|340529287|gb|AEK44492.1| hypothetical protein RAM_30085 [Amycolatopsis mediterranei S699]
Length=204
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/191 (41%), Positives = 105/191 (55%), Gaps = 12/191 (6%)
Query 90 GAVMLGFSLRRTPGESSFYWLTLALAAVWIAGALMSGPLHLGGICWRGRNQRPVITGTTV 149
G+ +LG SL PG F+ LT ++AA W AGA +GP+ R +R V+
Sbjct 12 GSGLLGASLASRPGSRRFHVLTASVAATWFAGAQAAGPVP--------RGRRDVVQPVVA 63
Query 150 GLLLAGIFGVGAMIVRAIPGAAEPIARVLQFAHQGTLLPILLITLINGIAEEMFFRGALY 209
G G+F A++ R IP I VL AH+G+ + L+ G AEE+FFRGALY
Sbjct 64 GAGAFGVFYGCALVARRIPPLRRAITGVLDHAHRGSKASVAATALLTGAAEEVFFRGALY 123
Query 210 TALGRRYPVTISTVLYVGATMASANLMLGFAAIFVGTVCALERRASGGVLAPILTHFVWG 269
A G R ST +YV +T A+ N L A+ +GT+ A +R SGGV AP+LTH VW
Sbjct 124 DAAGAR----ASTAVYVLSTTATRNPALVLASAVMGTLFAWQRGRSGGVQAPLLTHVVWS 179
Query 270 LIMVFALPPLF 280
+M+ +P LF
Sbjct 180 ALMLGFMPRLF 190
>gi|54023159|ref|YP_117401.1| hypothetical protein nfa11920 [Nocardia farcinica IFM 10152]
gi|54014667|dbj|BAD56037.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=206
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 82/204 (41%), Positives = 114/204 (56%), Gaps = 8/204 (3%)
Query 77 RRRRVVVGVTLVIGAVMLGFSLRRTPGESSFYWLTLALAAVWIAGALMSGPLHLGGICWR 136
RR R V + +G +LG SL P + FY LTLA AA + AG L + P G
Sbjct 3 RRDRAPVVLVGALGTGLLGVSLSAPPDSARFYGLTLATAATFTAGGLAATPPGPPG---- 58
Query 137 GRNQRPVITGTTVGLLLAGIFGVGAMIVRAIPGAAEPIARVLQFAHQGTLLPILLITLIN 196
R V+ +G+ G+F A++ R IP IA +L++A +G +LL L N
Sbjct 59 ---DRRVLPPVLLGVGAFGVFYGCALVARRIPLLRRAIAHLLRYADRGRTPAVLLTALAN 115
Query 197 GIAEEMFFRGALYTALGRRYPVTISTVLYVGATMASANLMLGFAAIFVGTVCALERRASG 256
G AEE+FFRGA+Y A G +PV +ST +YV T A+ N L AA +G++ L+RR +G
Sbjct 116 GAAEEVFFRGAVYAAAGT-HPVAVSTGVYVLTTTATRNPALVLAAAVMGSLFGLQRRRTG 174
Query 257 GVLAPILTHFVWGLIMVFALPPLF 280
G+ A +LTH W +M+ LPPLF
Sbjct 175 GITASLLTHLTWSTLMLHYLPPLF 198
>gi|336458773|gb|EGO37733.1| hypothetical protein MAPs_10570 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=65
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/63 (75%), Positives = 54/63 (86%), Gaps = 0/63 (0%)
Query 220 ISTVLYVGATMASANLMLGFAAIFVGTVCALERRASGGVLAPILTHFVWGLIMVFALPPL 279
IST+LY ATMA+ N MLGFAA+ +GTVCALERRASGGVLAP+LTH WGLIMV ALPP+
Sbjct 3 ISTLLYTAATMAAGNPMLGFAAVILGTVCALERRASGGVLAPVLTHCGWGLIMVLALPPV 62
Query 280 FAV 282
F +
Sbjct 63 FGL 65
>gi|184201768|ref|YP_001855975.1| hypothetical protein KRH_21220 [Kocuria rhizophila DC2201]
gi|183581998|dbj|BAG30469.1| hypothetical membrane protein [Kocuria rhizophila DC2201]
Length=230
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/188 (37%), Positives = 100/188 (54%), Gaps = 9/188 (4%)
Query 94 LGFSLRRTPGESSFYWLTLALAAVWIAGALMSGPLHLGG--ICWR--GRNQRPVITGTTV 149
L +SLR G+ FY T LA V+IAG+ S + + G + W+ R R + G
Sbjct 45 LAWSLRIPAGDPWFYPATFILAGVYIAGS--SAAIRMTGERLPWKVTPRGMRDAVLG--- 99
Query 150 GLLLAGIFGVGAMIVRAIPGAAEPIARVLQFAHQGTLLPILLITLINGIAEEMFFRGALY 209
G++LA IF G +VR IP EP+ +L A G+L + L T +NG+AEE ++RGAL+
Sbjct 100 GIVLAVIFVAGGFMVRFIPFLGEPVHELLNHARVGSLFMVALTTAVNGVAEETYYRGALW 159
Query 210 TALGRRYPVTISTVLYVGATMASANLMLGFAAIFVGTVCALERRASGGVLAPILTHFVWG 269
L R + ++T+ Y T +L FAA +G R + ++ PI+ H VW
Sbjct 160 RVLPRGRRILVTTIAYTAVTSLVGIPLLAFAAAALGAFVGYLRERTRSLVPPIVAHLVWS 219
Query 270 LIMVFALP 277
L M+F LP
Sbjct 220 LTMLFVLP 227
>gi|300781607|ref|ZP_07091461.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
33030]
gi|300533314|gb|EFK54375.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
33030]
Length=206
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/209 (32%), Positives = 100/209 (48%), Gaps = 28/209 (13%)
Query 88 VIGAVMLGFSLRRTPGESS--FYWLTLALAAV-------WIAGALMSGPLHLGGICWRGR 138
V+GA LG L R G+ S FY T A V W + + +GP R
Sbjct 10 VLGA--LGLFLARNAGDGSLGFYAFTFFAATVYALGWWLWGSKSAFAGP----------R 57
Query 139 NQRPVITGTTVGLLLAGIFGVGAMIVRAIPGAAEPIARVLQFAHQGTLLPILLITLINGI 198
R + G +G LA +F +GA++V+ IP A P+ ++L QG LLP + +INGI
Sbjct 58 IGRELGRGVLIGAALAIVFVLGALVVQNIPFLAGPVEQLLNTPDQGGLLPTFFVLVINGI 117
Query 199 AEEMFFRGALYTALGRRYPV-------TISTVLYVGATMASANLMLGFAAIFVGTVCALE 251
EE+ +R + L R+P +ST++Y T+A +L F+A+ +G V E
Sbjct 118 GEELVYRDMVPRQLRERFPRLPEISVGVVSTLIYGVVTIAMGVPLLVFSALVLGAVAFYE 177
Query 252 RRASGGVLAPILTHFVWGLIMVFALPPLF 280
S + +PI H W + M+ +P F
Sbjct 178 ASRSRRLYSPIAVHLTWSVTMLLVMPLFF 206
>gi|227548197|ref|ZP_03978246.1| abortive infection protein [Corynebacterium lipophiloflavum DSM
44291]
gi|227079758|gb|EEI17721.1| abortive infection protein [Corynebacterium lipophiloflavum DSM
44291]
Length=210
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/142 (38%), Positives = 71/142 (50%), Gaps = 7/142 (4%)
Query 146 GTTVGLLLAGIFGVGAMIVRAIPGAAEPIARVLQFAHQGTLLPILLITLINGIAEEMFFR 205
G +G LA IF GA+IV IP AEP+ ++L +G L P LL+ ++NGI EE+ +R
Sbjct 68 GVAIGAALAAIFVAGAVIVSRIPLLAEPVGQLLATTEKGGLAPTLLVLILNGIGEELVYR 127
Query 206 GALYTAL---GRRYPVT----ISTVLYVGATMASANLMLGFAAIFVGTVCALERRASGGV 258
AL L G + T +S LY T A +L AA +G V E SG +
Sbjct 128 DALPRQLRVHGLLHHTTSMSAVSLALYCLVTAAMGVWLLILAAAVIGAVAHYEAFRSGRL 187
Query 259 LAPILTHFVWGLIMVFALPPLF 280
+ I H W M+F LP F
Sbjct 188 YSSISLHLTWSSGMLFLLPLFF 209
>gi|296394817|ref|YP_003659701.1| abortive infection protein [Segniliparus rotundus DSM 44985]
gi|296181964|gb|ADG98870.1| Abortive infection protein [Segniliparus rotundus DSM 44985]
Length=218
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/183 (34%), Positives = 81/183 (45%), Gaps = 3/183 (1%)
Query 97 SLRRTPGESSFYWLTLALAAVWIAGALMSGPLHLGGICWRGRNQRPVITGTTVGLLLAGI 156
+L R PG +F +AAVW A + GG+ N R G G L G+
Sbjct 35 ALTRRPGSRAFTTWAAMVAAVWFASG-EAADRAAGGVSRERWNPRGSGRGAVFGAALGGL 93
Query 157 FGVGAMIVRAIPGAAEPIARVLQFAHQGTLLPILLITLINGIAEEMFFRGALYTAL--GR 214
F + A IVR P A + VL + T ++++ L+ G AEE FFRG +Y GR
Sbjct 94 FVIVAPIVRRFPVLARWVDAVLAHRSRATGPGVVILALVAGAAEERFFRGPVYDQAGGGR 153
Query 215 RYPVTISTVLYVGATMASANLMLGFAAIFVGTVCALERRASGGVLAPILTHFVWGLIMVF 274
STVLY AT + N L AA +G A ER + V + H W M +
Sbjct 154 GRKTLASTVLYTAATAGTGNPALVAAAAALGLAAAAERGRTRSVFPSMALHAAWTTTMYY 213
Query 275 ALP 277
A P
Sbjct 214 AFP 216
>gi|172039751|ref|YP_001799465.1| hypothetical protein cur_0071 [Corynebacterium urealyticum DSM
7109]
gi|171851055|emb|CAQ04031.1| hypothetical protein cu0071 [Corynebacterium urealyticum DSM
7109]
Length=209
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 93/210 (45%), Gaps = 12/210 (5%)
Query 79 RRVVVGVTLVIGAVMLGFSLRRTPGESSFYWLTLALAAVWIAGALMSGPLHLGGICWRGR 138
R ++ V V+GA L + G +SFY T VW+A L G C+ R
Sbjct 4 RLAIILVPAVLGAASLFWVSSSPAGSASFYLATAVAFLVWLAAWLGFGDRR----CFSPR 59
Query 139 N----QRPVITGTTVGLLLAGIFGVGAMIVRAIPGAAEPIARVLQFAHQGTLLPILLITL 194
R + G +G++L GIF +GA++ R I AEP+A ++ L +L +
Sbjct 60 AGSTAARELGVGVGLGVVLLGIFLLGALVTRNILVLAEPVAGLMDNMRVDALWATVLTLV 119
Query 195 INGIAEEMFFRGALYTALGR----RYPVTISTVLYVGATMASANLMLGFAAIFVGTVCAL 250
+NG+ EE+FFR AL + + LYV T+A +L ++ +G AL
Sbjct 120 LNGVGEELFFRDVARRALDSLASPAASLGLQVALYVLVTVAMGVPLLLVGSLCIGLFTAL 179
Query 251 ERRASGGVLAPILTHFVWGLIMVFALPPLF 280
R G +L H W M F LP F
Sbjct 180 LARRYGTILGATALHLSWSTGMAFLLPLFF 209
>gi|94987200|ref|YP_595133.1| hypothetical protein LI0758 [Lawsonia intracellularis PHE/MN1-00]
gi|94731449|emb|CAJ54812.1| hypothetical protein LI0758 [Lawsonia intracellularis PHE/MN1-00]
Length=208
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/221 (25%), Positives = 96/221 (44%), Gaps = 23/221 (10%)
Query 67 VPHHEPPGIVRRRRVVVGVTLVIGAVMLGFSLRRTPGESSFYWLTLALAAVWIA--GALM 124
+ +H P G+ V++ V + A++ G + +WL ++ +++ +A L+
Sbjct 1 MKNHTPSGLQVLFLVLLAV--IFWAIVFGTTYIN-------FWLGMSCSSMVLAFFSFLL 51
Query 125 SGPLHLGGICWRGRNQRPVITGTTVGLLLAGIFGVGAMI-VRAIPGAAEPIARVLQFAHQ 183
P H W+ + G +L IF +G MI + +P A +A + Q
Sbjct 52 GSPFHYSKFSWK-----VCLLGIGSAFILYSIFYLGDMIATKLLPFAQAQVADIYSIREQ 106
Query 184 GTLLPI-LLITLINGIAEEMFFRGAL----YTALGRRYPVTISTVLYVGATMASANLMLG 238
+ I ++ I AEE+F+RG T G ++ V Y G + S N ML
Sbjct 107 SNSVLIGFILLFITSPAEEIFWRGFFQRWAMTRFGDLGGWLLAGVSYAGVHIWSMNSMLI 166
Query 239 FAAIFVGTVCALERRASGGVLAPILTHFVWGLIMVFALPPL 279
F+A G L + ++ I++H +W L MVF L P+
Sbjct 167 FSAAIAGLFWGLIFWRTSNLIPCIVSHSLWTL-MVFVLFPI 206
>gi|300857171|ref|YP_003782155.1| putative protease [Clostridium ljungdahlii DSM 13528]
gi|300437286|gb|ADK17053.1| predicted protease [Clostridium ljungdahlii DSM 13528]
Length=206
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/145 (29%), Positives = 64/145 (45%), Gaps = 7/145 (4%)
Query 141 RPVITGTTVGLLLAGIFGVGAMIV-RAIPGAAEPIARVLQFAHQGTLLPI-LLITLINGI 198
R ++ G + L GIF VG +I P I+ V L I LL+ I G
Sbjct 62 RHILIGILSAIALYGIFYVGNIISGYLFPFKDTQISSVYSNKSNANLALIGLLLFFIIGP 121
Query 199 AEEMFFRGALYTALGRRYP----VTISTVLYVGATMASANLMLGFAAIFVGTVCALERRA 254
EE+++RG + LG+ + S +LY + + N ML AA+ G +
Sbjct 122 GEELYWRGFIQNTLGKEFGENKGYLFSVLLYAAVHIVTGNFMLIIAALVCGLFWGWLYKK 181
Query 255 SGGVLAPILTHFVWGLIMVFALPPL 279
++ I++H +W L +F L PL
Sbjct 182 EKSLIPVIISHAIWDL-TIFVLLPL 205
>gi|254877517|ref|ZP_05250227.1| predicted protein [Francisella philomiragia subsp. philomiragia
ATCC 25015]
gi|254843538|gb|EET21952.1| predicted protein [Francisella philomiragia subsp. philomiragia
ATCC 25015]
Length=256
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/160 (30%), Positives = 76/160 (48%), Gaps = 39/160 (24%)
Query 117 VWIAGALMSGPLHLGGICWRGRNQRPVITGTTVGLLLAGIFGVGAMIVRAIPGAAEPIAR 176
+W+A AL+S + I W G+L + + GVG ++ +A+
Sbjct 110 IWLAVALVSVVTSISLIVW--------------GILTSELTGVG-------EATSQELAK 148
Query 177 VLQFAHQGTLLPILLI---TLINGIAEEMFFRGALYTALGRRYPVTIST----VLYVGAT 229
+ T++ ++LI L+N I EE+ FRG + T L + + ++++ L+ G
Sbjct 149 L------STIVILMLIPVGALLNAIVEEVIFRGIIQTELTKVFNISVAIFLQAFLFAGFH 202
Query 230 MASA--NLMLGFAAIFVGTVCA--LERRASGGVLAPILTH 265
A N ++GFA FV CA L R GVLAPI+TH
Sbjct 203 YAGGFPNGLIGFAMTFVYA-CALGLMRYKVKGVLAPIITH 241
>gi|189468024|ref|ZP_03016809.1| hypothetical protein BACINT_04418 [Bacteroides intestinalis DSM
17393]
gi|189436288|gb|EDV05273.1| hypothetical protein BACINT_04418 [Bacteroides intestinalis DSM
17393]
Length=205
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/148 (32%), Positives = 75/148 (51%), Gaps = 8/148 (5%)
Query 139 NQRPVITGTTVGLLLAGIFGVGAMIVRAIPGAAEPIARVLQFAHQGT--LLPILLITLIN 196
+ + + G + ++L GIF VG + A P ++ G L +L+ ++
Sbjct 59 DWKNIAGGVALSVVLWGIFWVGDKASAWLFDFARPQVELIYGMKTGENPWLLSILLLILI 118
Query 197 GIAEEMFFRGALYTALGRRY-PVT---ISTVLYVGATMASANLMLGFAAIFVGTVCALER 252
G AEE+F+RG + AL +R+ P T ++T++Y + S N ML AA+ VG + L
Sbjct 119 GPAEEIFWRGYVQNALSKRWNPNTGFIVTTLVYALVHIWSFNFMLVMAALVVGAIWGLAY 178
Query 253 RASGGVL-APILTHFVWGLIMVFALPPL 279
R L A I++H VW + VF L P+
Sbjct 179 RLYPQKLGALIVSHAVWD-VAVFVLFPI 205
>gi|296141952|ref|YP_003649194.1| Abortive infection protein [Tsukamurella paurometabola DSM 20162]
gi|296030086|gb|ADG80855.1| Abortive infection protein [Tsukamurella paurometabola DSM 20162]
Length=232
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/118 (33%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query 159 VGAMIVRAIPGAAEPIARVLQFAHQGTLLPILLITLINGIAEEMFFRGALYTALGRRYPV 218
+GA+ + P A+ ++ L A +G + + L G AEE+FFR L + L R+ V
Sbjct 110 IGALTLLRFPWTAQWVSAALTTA-RGDAAIVFSVALATGAAEEVFFRIGLRSVLPARWYV 168
Query 219 TISTVLYVGATMASANLMLGFAAIFVGTVCALERRASGGVLAPILTHFVW--GLIMVF 274
STV+Y T A+ N L A+I +G V A P++ H +W G+I +F
Sbjct 169 LASTVIYGVVTAATGNGALVIASILLGLVAAQMYYWFPRWYVPVIIHALWTVGVIGIF 226
>gi|317484208|ref|ZP_07943137.1| CAAX amino terminal protease [Bilophila wadsworthia 3_1_6]
gi|316924557|gb|EFV45714.1| CAAX amino terminal protease [Bilophila wadsworthia 3_1_6]
Length=211
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 50/177 (29%), Positives = 75/177 (43%), Gaps = 22/177 (12%)
Query 112 LALAAVWIAGALMSGPLHLGGICWRGRNQRPVITGTTVGLLLAGIFGVG----AMIVRAI 167
LAL + W AG M G R V+ G LL IF +G + R
Sbjct 44 LALLSFWFAGVPMKRTEWTG---------RAVLIGLVSAALLYAIFALGNTLSGWLFRFA 94
Query 168 PGAAEPIARVLQFAHQGTLLPILLITL-INGIAEEMFFRGALYTALGRRYP----VTIST 222
P ++ + H+G+ L + L+ L I AEE+F+RG + R+ ++
Sbjct 95 P---HQVSAIYDIRHEGSPLAMALVLLFITSPAEEVFWRGFIQRWFTHRFGGKAGWLLAV 151
Query 223 VLYVGATMASANLMLGFAAIFVGTVCALERRASGGVLAPILTHFVWGLIMVFALPPL 279
+Y G + S NLML AA+ G + ++ IL+H W + VF L PL
Sbjct 152 CVYAGVHVFSGNLMLVMAALTAGLFWGWLYWKTDSLVPCILSHAFW-TVAVFILWPL 207
>gi|256367694|ref|YP_003108263.1| Tir [Escherichia coli]
gi|228480631|gb|ACQ41959.1| Tir [Escherichia coli]
Length=183
Score = 43.5 bits (101), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 37/121 (31%), Positives = 58/121 (48%), Gaps = 14/121 (11%)
Query 154 AGIFGVGAMIVRAIPGAAEPIARVLQFAHQ---GTLLPILLITLINGIAEEMFFRGALYT 210
G+F +G +A+ AEP L FA + +L +L I ++ + EE FRG +
Sbjct 57 VGVFLLG----KALALPAEPFMTKL-FADKSIPDVILTLLTIFILAPLNEETLFRGIMLN 111
Query 211 ALGRRYPVT------ISTVLYVGATMASANLMLGFAAIFVGTVCALERRASGGVLAPILT 264
RY T I+++L+V A NL+ VG + ++ R SGG+L P+L
Sbjct 112 VFRSRYCWTMWLGALITSLLFVAAHSQYQNLLTLAELFLVGLITSVARIRSGGLLLPVLL 171
Query 265 H 265
H
Sbjct 172 H 172
>gi|345040165|gb|EGW44447.1| hypothetical protein HMPREF0178_02736 [Bilophila sp. 4_1_30]
Length=211
Score = 43.5 bits (101), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 50/177 (29%), Positives = 75/177 (43%), Gaps = 22/177 (12%)
Query 112 LALAAVWIAGALMSGPLHLGGICWRGRNQRPVITGTTVGLLLAGIFGVG----AMIVRAI 167
LAL + W AG M G R V+ G LL IF +G + R
Sbjct 44 LALLSFWFAGVPMKRTEWTG---------RAVLIGLVSAALLYAIFALGNTLSGWLFRFA 94
Query 168 PGAAEPIARVLQFAHQGTLLPILLITL-INGIAEEMFFRGALYTALGRRYP----VTIST 222
P ++ + H+G+ L + L+ L I AEE+F+RG + R+ ++
Sbjct 95 P---HQVSAIYDIRHEGSPLAMALVLLFITSPAEEVFWRGFVQRWFTHRFGGKAGWLLAV 151
Query 223 VLYVGATMASANLMLGFAAIFVGTVCALERRASGGVLAPILTHFVWGLIMVFALPPL 279
+Y G + S NLML AA+ G + ++ IL+H W + VF L PL
Sbjct 152 CVYAGVHIFSGNLMLVMAALTAGLFWGWLYWKTDSLVPCILSHAFW-TVAVFILWPL 207
>gi|332346485|gb|AEE59818.1| putative transfer inhibition protein [Escherichia coli UMNK88]
gi|345389849|gb|EGX19649.1| CAAX amino terminal protease family protein [Escherichia coli
TX1999]
Length=217
Score = 43.5 bits (101), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 37/120 (31%), Positives = 58/120 (49%), Gaps = 14/120 (11%)
Query 155 GIFGVGAMIVRAIPGAAEPIARVLQFAHQ---GTLLPILLITLINGIAEEMFFRGALYTA 211
G+F +G +A+ AEP L FA + +L +L I ++ + EE FRG +
Sbjct 92 GVFLLG----KALTLPAEPFMTKL-FADKSIPDVILTLLTIFILAPLNEETLFRGIMLNV 146
Query 212 LGRRYPVT------ISTVLYVGATMASANLMLGFAAIFVGTVCALERRASGGVLAPILTH 265
RY T I+++L+V A NL+ VG + ++ R SGG+L P+L H
Sbjct 147 FRSRYCWTMWLGALITSLLFVAAHSQYQNLLTLAELFLVGLITSVARIRSGGLLLPVLLH 206
Lambda K H
0.327 0.140 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 449018424576
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40