BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1152
Length=121
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608292|ref|NP_215668.1| transcriptional regulatory protein ... 239 1e-61
gi|294993338|ref|ZP_06799029.1| transcriptional regulator [Mycob... 237 4e-61
gi|340626165|ref|YP_004744617.1| putative transcriptional regula... 236 6e-61
gi|296170038|ref|ZP_06851642.1| GntR family transcriptional regu... 219 9e-56
gi|183984271|ref|YP_001852562.1| transcriptional regulatory prot... 218 3e-55
gi|240172473|ref|ZP_04751132.1| putative transcriptional regulat... 217 4e-55
gi|118616745|ref|YP_905077.1| transcriptional regulatory protein... 209 1e-52
gi|339294143|gb|AEJ46254.1| transcriptional regulatory protein [... 207 4e-52
gi|254820692|ref|ZP_05225693.1| regulatory protein GntR, HTH [My... 195 1e-48
gi|342861763|ref|ZP_08718409.1| GntR family transcriptional regu... 193 6e-48
gi|118466127|ref|YP_880535.1| GntR family transcriptional regula... 192 1e-47
gi|41408730|ref|NP_961566.1| hypothetical protein MAP2632c [Myco... 191 3e-47
gi|336458689|gb|EGO37650.1| putative transcriptional regulator [... 190 7e-47
gi|108801025|ref|YP_641222.1| GntR family transcriptional regula... 164 6e-39
gi|119870166|ref|YP_940118.1| GntR family transcriptional regula... 163 6e-39
gi|145222723|ref|YP_001133401.1| regulatory protein GntR [Mycoba... 159 1e-37
gi|120405521|ref|YP_955350.1| regulatory protein GntR [Mycobacte... 149 2e-34
gi|118468112|ref|YP_889420.1| GntR family transcriptional regula... 125 2e-27
gi|312138638|ref|YP_004005974.1| GntR family transcriptional reg... 103 9e-21
gi|297198626|ref|ZP_06916023.1| GntR family transcriptional regu... 101 5e-20
gi|333921169|ref|YP_004494750.1| GntR family transcriptional reg... 98.2 4e-19
gi|258650797|ref|YP_003199953.1| GntR family transcriptional reg... 94.0 6e-18
gi|54026884|ref|YP_121126.1| putative transcriptional regulator ... 93.6 9e-18
gi|343925242|ref|ZP_08764769.1| putative GntR family transcripti... 93.6 9e-18
gi|320011658|gb|ADW06508.1| transcriptional regulator, GntR fami... 92.0 2e-17
gi|297561523|ref|YP_003680497.1| GntR family transcriptional reg... 91.7 3e-17
gi|111022622|ref|YP_705594.1| transcriptional regulator [Rhodoco... 91.7 3e-17
gi|289772559|ref|ZP_06531937.1| GntR family transcriptional regu... 91.3 4e-17
gi|226365128|ref|YP_002782911.1| GntR family transcriptional reg... 91.3 4e-17
gi|21220222|ref|NP_626001.1| GntR family transcriptional regulat... 91.3 5e-17
gi|291298890|ref|YP_003510168.1| GntR family transcriptional reg... 90.5 7e-17
gi|311744702|ref|ZP_07718499.1| GntR family transcriptional regu... 89.0 2e-16
gi|256831810|ref|YP_003160537.1| transcriptional regulator, GntR... 89.0 2e-16
gi|291440560|ref|ZP_06579950.1| GntR-family transcriptional regu... 88.6 3e-16
gi|254392383|ref|ZP_05007565.1| GntR-family transcriptional regu... 88.2 3e-16
gi|295396599|ref|ZP_06806755.1| GntR family transcriptional regu... 88.2 3e-16
gi|345014072|ref|YP_004816426.1| GntR family transcriptional reg... 87.0 7e-16
gi|294811772|ref|ZP_06770415.1| Putative GntR-family transcripti... 87.0 7e-16
gi|302518200|ref|ZP_07270542.1| GntR-family transcriptional regu... 87.0 8e-16
gi|29833108|ref|NP_827742.1| GntR family transcriptional regulat... 86.7 1e-15
gi|296129163|ref|YP_003636413.1| GntR family transcriptional reg... 86.7 1e-15
gi|227498145|ref|ZP_03928316.1| transcriptional regulator [Actin... 86.7 1e-15
gi|116670625|ref|YP_831558.1| GntR family transcriptional regula... 85.9 2e-15
gi|318061681|ref|ZP_07980402.1| GntR family transcriptional regu... 85.5 2e-15
gi|302546577|ref|ZP_07298919.1| GntR family transcriptional regu... 85.5 3e-15
gi|326780239|ref|ZP_08239504.1| transcriptional regulator, GntR ... 85.5 3e-15
gi|302550396|ref|ZP_07302738.1| GntR family transcriptional regu... 84.7 4e-15
gi|116671563|ref|YP_832496.1| GntR family transcriptional regula... 84.7 4e-15
gi|297161749|gb|ADI11461.1| GntR family transcriptional regulato... 84.7 4e-15
gi|302524312|ref|ZP_07276654.1| GntR-family transcriptional regu... 84.7 4e-15
>gi|15608292|ref|NP_215668.1| transcriptional regulatory protein [Mycobacterium tuberculosis
H37Rv]
gi|15840592|ref|NP_335629.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
CDC1551]
gi|31792345|ref|NP_854838.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97]
73 more sequence titles
Length=121
Score = 239 bits (610), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 120/121 (99%), Positives = 121/121 (100%), Gaps = 0/121 (0%)
Query 1 VELRDWLRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARA 60
+ELRDWLRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARA
Sbjct 1 MELRDWLRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARA 60
Query 61 YRELESAAIVETRGRFGTFISRFDPTDAAMAAAAKEYVGVARALGLTKSDAMRYLTHVPD 120
YRELESAAIVETRGRFGTFISRFDPTDAAMAAAAKEYVGVARALGLTKSDAMRYLTHVPD
Sbjct 61 YRELESAAIVETRGRFGTFISRFDPTDAAMAAAAKEYVGVARALGLTKSDAMRYLTHVPD 120
Query 121 D 121
D
Sbjct 121 D 121
>gi|294993338|ref|ZP_06799029.1| transcriptional regulator [Mycobacterium tuberculosis 210]
gi|339297784|gb|AEJ49894.1| transcriptional regulator [Mycobacterium tuberculosis CCDC5180]
Length=121
Score = 237 bits (605), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 119/121 (99%), Positives = 120/121 (99%), Gaps = 0/121 (0%)
Query 1 VELRDWLRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARA 60
+ELRDWLRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARA
Sbjct 1 MELRDWLRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARA 60
Query 61 YRELESAAIVETRGRFGTFISRFDPTDAAMAAAAKEYVGVARALGLTKSDAMRYLTHVPD 120
YRELESAAIVETRGRFGTFISRFDPTDAAMAAAAKEYVGVARAL LTKSDAMRYLTHVPD
Sbjct 61 YRELESAAIVETRGRFGTFISRFDPTDAAMAAAAKEYVGVARALALTKSDAMRYLTHVPD 120
Query 121 D 121
D
Sbjct 121 D 121
>gi|340626165|ref|YP_004744617.1| putative transcriptional regulatory protein [Mycobacterium canettii
CIPT 140010059]
gi|340004355|emb|CCC43498.1| putative transcriptional regulatory protein [Mycobacterium canettii
CIPT 140010059]
Length=121
Score = 236 bits (603), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 119/121 (99%), Positives = 121/121 (100%), Gaps = 0/121 (0%)
Query 1 VELRDWLRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARA 60
+ELRDWLRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARA
Sbjct 1 MELRDWLRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARA 60
Query 61 YRELESAAIVETRGRFGTFISRFDPTDAAMAAAAKEYVGVARALGLTKSDAMRYLTHVPD 120
YRELESAAIVETRGRFGTFISRFDPTDAAMAAAAKEYVGVARALGLTKSDAMRYLT+VPD
Sbjct 61 YRELESAAIVETRGRFGTFISRFDPTDAAMAAAAKEYVGVARALGLTKSDAMRYLTNVPD 120
Query 121 D 121
D
Sbjct 121 D 121
>gi|296170038|ref|ZP_06851642.1| GntR family transcriptional regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295895306|gb|EFG75015.1| GntR family transcriptional regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=121
Score = 219 bits (559), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 116/121 (96%), Positives = 120/121 (99%), Gaps = 0/121 (0%)
Query 1 VELRDWLRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARA 60
+ELRDWL+VDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARA
Sbjct 1 MELRDWLKVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARA 60
Query 61 YRELESAAIVETRGRFGTFISRFDPTDAAMAAAAKEYVGVARALGLTKSDAMRYLTHVPD 120
YRELESAA+VETRGRFGTFISRFDPTDAAMAAAAKEYV VARALGLTKSDAMRYLT+VPD
Sbjct 61 YRELESAAVVETRGRFGTFISRFDPTDAAMAAAAKEYVEVARALGLTKSDAMRYLTNVPD 120
Query 121 D 121
D
Sbjct 121 D 121
>gi|183984271|ref|YP_001852562.1| transcriptional regulatory protein [Mycobacterium marinum M]
gi|183177597|gb|ACC42707.1| transcriptional regulatory protein [Mycobacterium marinum M]
Length=121
Score = 218 bits (554), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 117/121 (97%), Positives = 119/121 (99%), Gaps = 0/121 (0%)
Query 1 VELRDWLRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARA 60
+ELRDWLRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARA
Sbjct 1 MELRDWLRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARA 60
Query 61 YRELESAAIVETRGRFGTFISRFDPTDAAMAAAAKEYVGVARALGLTKSDAMRYLTHVPD 120
YRELESAAIVETRGRFGTFISRFDPTDAAMAAAAKEYV VARALGLTKSDA+RYLT VPD
Sbjct 61 YRELESAAIVETRGRFGTFISRFDPTDAAMAAAAKEYVEVARALGLTKSDAIRYLTAVPD 120
Query 121 D 121
D
Sbjct 121 D 121
>gi|240172473|ref|ZP_04751132.1| putative transcriptional regulatory protein [Mycobacterium kansasii
ATCC 12478]
Length=120
Score = 217 bits (553), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 115/120 (96%), Positives = 119/120 (99%), Gaps = 0/120 (0%)
Query 1 VELRDWLRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARA 60
+ELRDWLR+DVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARA
Sbjct 1 MELRDWLRIDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARA 60
Query 61 YRELESAAIVETRGRFGTFISRFDPTDAAMAAAAKEYVGVARALGLTKSDAMRYLTHVPD 120
YRELESAAIVETRGRFGTFISRFDPTDAAMAAAA+EYV VARALGLTKSDAMRYLT+VPD
Sbjct 61 YRELESAAIVETRGRFGTFISRFDPTDAAMAAAAREYVEVARALGLTKSDAMRYLTNVPD 120
>gi|118616745|ref|YP_905077.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
gi|118568855|gb|ABL03606.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
Length=121
Score = 209 bits (532), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 113/121 (94%), Positives = 115/121 (96%), Gaps = 0/121 (0%)
Query 1 VELRDWLRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARA 60
+ELRDWLRVDVKAGKPLFDQL TQVIDGVRAGALPPGTRLPTVRDL GQLGVAANTVARA
Sbjct 1 MELRDWLRVDVKAGKPLFDQLGTQVIDGVRAGALPPGTRLPTVRDLVGQLGVAANTVARA 60
Query 61 YRELESAAIVETRGRFGTFISRFDPTDAAMAAAAKEYVGVARALGLTKSDAMRYLTHVPD 120
YRELES AIVETRGR GTFISRFDPTDAAMAAAAKEYV VARALGLTKSDA+RYLT VPD
Sbjct 61 YRELESVAIVETRGRCGTFISRFDPTDAAMAAAAKEYVEVARALGLTKSDAIRYLTAVPD 120
Query 121 D 121
D
Sbjct 121 D 121
>gi|339294143|gb|AEJ46254.1| transcriptional regulatory protein [Mycobacterium tuberculosis
CCDC5079]
Length=105
Score = 207 bits (527), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 104/105 (99%), Positives = 105/105 (100%), Gaps = 0/105 (0%)
Query 17 LFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARAYRELESAAIVETRGRF 76
+FDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARAYRELESAAIVETRGRF
Sbjct 1 MFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARAYRELESAAIVETRGRF 60
Query 77 GTFISRFDPTDAAMAAAAKEYVGVARALGLTKSDAMRYLTHVPDD 121
GTFISRFDPTDAAMAAAAKEYVGVARALGLTKSDAMRYLTHVPDD
Sbjct 61 GTFISRFDPTDAAMAAAAKEYVGVARALGLTKSDAMRYLTHVPDD 105
>gi|254820692|ref|ZP_05225693.1| regulatory protein GntR, HTH [Mycobacterium intracellulare ATCC
13950]
Length=121
Score = 195 bits (496), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 102/121 (85%), Positives = 113/121 (94%), Gaps = 0/121 (0%)
Query 1 VELRDWLRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARA 60
+EL DWLRVDVKAGKPLFDQLRTQVIDGVR GALPPGTRLPTVRDLAGQLGVA NTVARA
Sbjct 1 MELGDWLRVDVKAGKPLFDQLRTQVIDGVREGALPPGTRLPTVRDLAGQLGVAVNTVARA 60
Query 61 YRELESAAIVETRGRFGTFISRFDPTDAAMAAAAKEYVGVARALGLTKSDAMRYLTHVPD 120
YRELE+AAI+ETRGRFGTF++R+DPTDAAMAAAA+EYV VAR LGL K+DA+RY+ VPD
Sbjct 61 YRELETAAIIETRGRFGTFVARYDPTDAAMAAAAREYVRVARGLGLDKADALRYIESVPD 120
Query 121 D 121
+
Sbjct 121 E 121
>gi|342861763|ref|ZP_08718409.1| GntR family transcriptional regulator [Mycobacterium colombiense
CECT 3035]
gi|342130897|gb|EGT84193.1| GntR family transcriptional regulator [Mycobacterium colombiense
CECT 3035]
Length=121
Score = 193 bits (491), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 101/121 (84%), Positives = 113/121 (94%), Gaps = 0/121 (0%)
Query 1 VELRDWLRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARA 60
+EL DWL+VD+KAGKPLFDQLRTQVIDGVR GALPPGTRLPTVRDLAGQLGVA NTVARA
Sbjct 1 MELGDWLKVDMKAGKPLFDQLRTQVIDGVREGALPPGTRLPTVRDLAGQLGVAVNTVARA 60
Query 61 YRELESAAIVETRGRFGTFISRFDPTDAAMAAAAKEYVGVARALGLTKSDAMRYLTHVPD 120
YRELES+AI+ETRGRFGTFI+R+DPTDAAMAAAA+EYV VAR LGL K+DA+RY+ VPD
Sbjct 61 YRELESSAIIETRGRFGTFIARYDPTDAAMAAAAREYVRVARGLGLDKADAVRYIEAVPD 120
Query 121 D 121
+
Sbjct 121 E 121
>gi|118466127|ref|YP_880535.1| GntR family transcriptional regulator [Mycobacterium avium 104]
gi|254774166|ref|ZP_05215682.1| regulatory protein GntR, HTH [Mycobacterium avium subsp. avium
ATCC 25291]
gi|118167414|gb|ABK68311.1| regulatory protein GntR, HTH [Mycobacterium avium 104]
Length=121
Score = 192 bits (489), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 100/121 (83%), Positives = 113/121 (94%), Gaps = 0/121 (0%)
Query 1 VELRDWLRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARA 60
+EL DWLRVD+KAGKPLFDQLRTQVI+GVR GALPPGTRLPTVR+LAGQLGVA NTVARA
Sbjct 1 MELGDWLRVDMKAGKPLFDQLRTQVIEGVREGALPPGTRLPTVRELAGQLGVAVNTVARA 60
Query 61 YRELESAAIVETRGRFGTFISRFDPTDAAMAAAAKEYVGVARALGLTKSDAMRYLTHVPD 120
YRELESAAI+ETRGRFGTF++R+DPTDAAMAAAA+EYV VAR LGL K+DA+RY+ VPD
Sbjct 61 YRELESAAIIETRGRFGTFVARYDPTDAAMAAAAREYVRVARGLGLDKADAVRYIESVPD 120
Query 121 D 121
+
Sbjct 121 E 121
>gi|41408730|ref|NP_961566.1| hypothetical protein MAP2632c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41397088|gb|AAS04949.1| hypothetical protein MAP_2632c [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=121
Score = 191 bits (485), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 99/121 (82%), Positives = 112/121 (93%), Gaps = 0/121 (0%)
Query 1 VELRDWLRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARA 60
+EL DWLRVD+KAGKPLFDQLRTQVI+GVR GALPPGTRLPTVR+LAGQLGVA NTVAR
Sbjct 1 MELGDWLRVDMKAGKPLFDQLRTQVIEGVREGALPPGTRLPTVRELAGQLGVAVNTVARG 60
Query 61 YRELESAAIVETRGRFGTFISRFDPTDAAMAAAAKEYVGVARALGLTKSDAMRYLTHVPD 120
YRELESAAI+ETRGRFGTF++R+DPTDAAMAAAA+EYV VAR LGL K+DA+RY+ VPD
Sbjct 61 YRELESAAIIETRGRFGTFVARYDPTDAAMAAAAREYVRVARGLGLDKADAVRYIESVPD 120
Query 121 D 121
+
Sbjct 121 E 121
>gi|336458689|gb|EGO37650.1| putative transcriptional regulator [Mycobacterium avium subsp.
paratuberculosis S397]
Length=117
Score = 190 bits (482), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 98/117 (84%), Positives = 110/117 (95%), Gaps = 0/117 (0%)
Query 5 DWLRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARAYREL 64
DWLRVD+KAGKPLFDQLRTQVI+GVR GALPPGTRLPTVR+LAGQLGVA NTVARAYREL
Sbjct 1 DWLRVDMKAGKPLFDQLRTQVIEGVREGALPPGTRLPTVRELAGQLGVAVNTVARAYREL 60
Query 65 ESAAIVETRGRFGTFISRFDPTDAAMAAAAKEYVGVARALGLTKSDAMRYLTHVPDD 121
ESAAI+ETRGRFGTF++R+DPTDAAMAAAA+EYV VAR LGL K+DA+RY+ VPD+
Sbjct 61 ESAAIIETRGRFGTFVARYDPTDAAMAAAAREYVRVARGLGLDKADAVRYIESVPDE 117
>gi|108801025|ref|YP_641222.1| GntR family transcriptional regulator [Mycobacterium sp. MCS]
gi|108771444|gb|ABG10166.1| transcriptional regulator, GntR family [Mycobacterium sp. MCS]
Length=121
Score = 164 bits (414), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 78/118 (67%), Positives = 95/118 (81%), Gaps = 0/118 (0%)
Query 3 LRDWLRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARAYR 62
L +W+ +D +A +PLFDQLRTQ+ID VR G L PGTRLPTVR+LAGQ+G+A NTVARAYR
Sbjct 4 LAEWVSLDARAARPLFDQLRTQIIDAVRDGRLSPGTRLPTVRELAGQMGLAVNTVARAYR 63
Query 63 ELESAAIVETRGRFGTFISRFDPTDAAMAAAAKEYVGVARALGLTKSDAMRYLTHVPD 120
ELE+A ++ETRGRFGTF+SR DP D AMA AA+ YV ARALG+ KS A+RY+ D
Sbjct 64 ELETAGVLETRGRFGTFVSRVDPADTAMATAAQNYVETARALGVEKSAALRYVESAFD 121
>gi|119870166|ref|YP_940118.1| GntR family transcriptional regulator [Mycobacterium sp. KMS]
gi|126436861|ref|YP_001072552.1| GntR family transcriptional regulator [Mycobacterium sp. JLS]
gi|119696255|gb|ABL93328.1| transcriptional regulator, GntR family [Mycobacterium sp. KMS]
gi|126236661|gb|ABO00062.1| transcriptional regulator, GntR family [Mycobacterium sp. JLS]
Length=133
Score = 163 bits (413), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 78/118 (67%), Positives = 95/118 (81%), Gaps = 0/118 (0%)
Query 3 LRDWLRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARAYR 62
L +W+ +D +A +PLFDQLRTQ+ID VR G L PGTRLPTVR+LAGQ+G+A NTVARAYR
Sbjct 16 LAEWVSLDARAARPLFDQLRTQIIDAVRDGRLSPGTRLPTVRELAGQMGLAVNTVARAYR 75
Query 63 ELESAAIVETRGRFGTFISRFDPTDAAMAAAAKEYVGVARALGLTKSDAMRYLTHVPD 120
ELE+A ++ETRGRFGTF+SR DP D AMA AA+ YV ARALG+ KS A+RY+ D
Sbjct 76 ELETAGVLETRGRFGTFVSRVDPADTAMATAAQNYVETARALGVEKSAALRYVESAFD 133
>gi|145222723|ref|YP_001133401.1| regulatory protein GntR [Mycobacterium gilvum PYR-GCK]
gi|315443188|ref|YP_004076067.1| GntR family transcriptional regulator [Mycobacterium sp. Spyr1]
gi|145215209|gb|ABP44613.1| transcriptional regulator, GntR family [Mycobacterium gilvum
PYR-GCK]
gi|315261491|gb|ADT98232.1| transcriptional regulator, GntR family [Mycobacterium sp. Spyr1]
Length=121
Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/114 (68%), Positives = 93/114 (82%), Gaps = 0/114 (0%)
Query 2 ELRDWLRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARAY 61
+L DW++VD A +PLFDQLRTQ+I GVR G L PGTRLPTVR+LAGQ+ +A NTVARAY
Sbjct 3 DLGDWVKVDPHAARPLFDQLRTQIIAGVRDGELAPGTRLPTVRELAGQVNLAVNTVARAY 62
Query 62 RELESAAIVETRGRFGTFISRFDPTDAAMAAAAKEYVGVARALGLTKSDAMRYL 115
RELE+A I+ETRGRFGTF++R DP D AMA AA YV ARALG+ K +A+RY+
Sbjct 63 RELEAAGILETRGRFGTFVARADPADVAMATAANTYVSAARALGVEKDEALRYI 116
>gi|120405521|ref|YP_955350.1| regulatory protein GntR [Mycobacterium vanbaalenii PYR-1]
gi|119958339|gb|ABM15344.1| transcriptional regulator, GntR family [Mycobacterium vanbaalenii
PYR-1]
Length=121
Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/114 (69%), Positives = 94/114 (83%), Gaps = 0/114 (0%)
Query 2 ELRDWLRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARAY 61
EL DW+RVD A +PLFDQLRTQ+I G+R G L PGTRLPTVR+LAGQ+ +A NTVARAY
Sbjct 3 ELGDWVRVDPHAARPLFDQLRTQIIAGIRDGELTPGTRLPTVRELAGQINLAVNTVARAY 62
Query 62 RELESAAIVETRGRFGTFISRFDPTDAAMAAAAKEYVGVARALGLTKSDAMRYL 115
RELE+A I+ETRGRFGT+++R DP DAAMA AA YV ARALG+ K +A+RY+
Sbjct 63 RELEAAGILETRGRFGTYVARSDPADAAMATAAHTYVATARALGVGKGEALRYV 116
>gi|118468112|ref|YP_889420.1| GntR family transcriptional regulator [Mycobacterium smegmatis
str. MC2 155]
gi|118169399|gb|ABK70295.1| regulatory protein GntR, HTH [Mycobacterium smegmatis str. MC2
155]
Length=118
Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/116 (62%), Positives = 92/116 (80%), Gaps = 0/116 (0%)
Query 5 DWLRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARAYREL 64
DW+ +D + KPLFDQLR Q+IDG+R G L PGTRLPTVR+LA +G+A NTVAR+YREL
Sbjct 3 DWVSIDPDSDKPLFDQLRVQIIDGIRDGRLSPGTRLPTVRELATHVGLAVNTVARSYREL 62
Query 65 ESAAIVETRGRFGTFISRFDPTDAAMAAAAKEYVGVARALGLTKSDAMRYLTHVPD 120
E+A ++ETRGRFGTF++R DP DAAMAAAA + AR+LG+++ DA+RY+ D
Sbjct 63 EAAGVLETRGRFGTFVARADPADAAMAAAANSFAEAARSLGISRDDALRYIESALD 118
>gi|312138638|ref|YP_004005974.1| GntR family transcriptional regulator [Rhodococcus equi 103S]
gi|325676295|ref|ZP_08155974.1| GntR family transcriptional regulator [Rhodococcus equi ATCC
33707]
gi|311887977|emb|CBH47289.1| putative GntR family transcriptional regulator [Rhodococcus equi
103S]
gi|325552856|gb|EGD22539.1| GntR family transcriptional regulator [Rhodococcus equi ATCC
33707]
Length=119
Score = 103 bits (257), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 52/110 (48%), Positives = 75/110 (69%), Gaps = 1/110 (0%)
Query 7 LRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARAYRELES 66
+ +D + P F+QLRTQ+++ V++ L GT++PTVR LA QL +A NTVAR YRELE
Sbjct 3 IEIDHASSTPPFEQLRTQILELVKSERLVAGTKIPTVRGLASQLHIAPNTVARTYRELEQ 62
Query 67 AAIVETRGRFGTFI-SRFDPTDAAMAAAAKEYVGVARALGLTKSDAMRYL 115
++ETRGR G+F+ + DPT A AA EY V R LG++ +DA+ ++
Sbjct 63 LGVIETRGRLGSFVAASGDPTRAKAQEAATEYARVVRRLGISDADAVAFV 112
>gi|297198626|ref|ZP_06916023.1| GntR family transcriptional regulator [Streptomyces sviceus ATCC
29083]
gi|297147157|gb|EDY58662.2| GntR family transcriptional regulator [Streptomyces sviceus ATCC
29083]
Length=123
Score = 101 bits (251), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/107 (51%), Positives = 74/107 (70%), Gaps = 1/107 (0%)
Query 7 LRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARAYRELES 66
L++ + P ++Q+R Q+ + RAG LP G RLPTVR LA LG+AANTVA+AYR LES
Sbjct 3 LKIHIDDSAPPYEQVRVQISEQARAGVLPVGYRLPTVRGLAESLGLAANTVAKAYRALES 62
Query 67 AAIVETRGRFGTFISRF-DPTDAAMAAAAKEYVGVARALGLTKSDAM 112
++ETRGR GTF++ + +A+AA+ YV AR LGLT+ DA+
Sbjct 63 DGVIETRGRNGTFVAAAGSAAERELASAAQAYVERARRLGLTEGDAL 109
>gi|333921169|ref|YP_004494750.1| GntR family transcriptional regulator [Amycolicicoccus subflavus
DQS3-9A1]
gi|333483390|gb|AEF41950.1| GntR family transcriptional regulator [Amycolicicoccus subflavus
DQS3-9A1]
Length=122
Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/110 (46%), Positives = 71/110 (65%), Gaps = 1/110 (0%)
Query 7 LRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARAYRELES 66
L +D + P ++Q+ TQ+I+ VR LP G +LPTVR LA +LG+A NTVAR+YRELE+
Sbjct 5 LSIDPDSSIPPYEQICTQIIELVRQEDLPAGCKLPTVRQLAAELGIAPNTVARSYRELEA 64
Query 67 AAIVETRGRFGTFI-SRFDPTDAAMAAAAKEYVGVARALGLTKSDAMRYL 115
A ++ETRGR G+F+ + DPT + A YV R G T + R++
Sbjct 65 AEVIETRGRLGSFVAASGDPTRSRAQTEAVRYVTELRGWGFTDEEISRFV 114
>gi|258650797|ref|YP_003199953.1| GntR family transcriptional regulator [Nakamurella multipartita
DSM 44233]
gi|258554022|gb|ACV76964.1| transcriptional regulator, GntR family [Nakamurella multipartita
DSM 44233]
Length=123
Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/109 (47%), Positives = 74/109 (68%), Gaps = 1/109 (0%)
Query 9 VDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARAYRELESAA 68
+D ++ P F+Q+R Q+ + G LP GT+LPTVR LA L +A NTVARAYRELE+A
Sbjct 8 IDPESAVPPFEQVRAQLAHRIADGTLPVGTKLPTVRALAADLSLATNTVARAYRELETAG 67
Query 69 IVETRGRFGTFI-SRFDPTDAAMAAAAKEYVGVARALGLTKSDAMRYLT 116
++ETRGR GTF+ + D + +AAAA +YV LG+++ +A+ +T
Sbjct 68 MIETRGRAGTFVAASGDASRTRVAAAAADYVTTVDRLGVSRDEALAIVT 116
>gi|54026884|ref|YP_121126.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
gi|54018392|dbj|BAD59762.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
Length=131
Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 56/108 (52%), Positives = 73/108 (68%), Gaps = 1/108 (0%)
Query 9 VDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARAYRELESAA 68
+D + +P ++QLR V+ VR+G L GT++PTVR LA +LG+A NTVARAYRELE+
Sbjct 6 IDPTSAEPPYEQLRLAVLAQVRSGELTAGTKIPTVRALAAELGLAPNTVARAYRELEADG 65
Query 69 IVETRGRFGTFI-SRFDPTDAAMAAAAKEYVGVARALGLTKSDAMRYL 115
++ETRGR G+FI S DPT A AA Y+ R LGL DA+ YL
Sbjct 66 VLETRGRQGSFIASSGDPTRDAAGRAAAAYLAAIRRLGLDDEDALHYL 113
>gi|343925242|ref|ZP_08764769.1| putative GntR family transcriptional regulator [Gordonia alkanivorans
NBRC 16433]
gi|343764839|dbj|GAA11695.1| putative GntR family transcriptional regulator [Gordonia alkanivorans
NBRC 16433]
Length=125
Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 55/106 (52%), Positives = 69/106 (66%), Gaps = 3/106 (2%)
Query 3 LRDWLRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARAYR 62
L D L VD + +P F+Q+R ++I+ + G L G RLPTVR LA L +A NTVA+ YR
Sbjct 5 LLDNLTVDPASDRPPFEQVRLRIIELIADGTLLTGERLPTVRALAAHLDLAPNTVAKTYR 64
Query 63 ELESAAIVETRGRFGTFI--SRFDPTDAAMAAAAKEYVGVARALGL 106
ELE+A ++ETRGR G+FI R D DA AAA YV AR LGL
Sbjct 65 ELEAAGVIETRGRSGSFIRAGRHDAHDAGFAAATT-YVETARDLGL 109
>gi|320011658|gb|ADW06508.1| transcriptional regulator, GntR family [Streptomyces flavogriseus
ATCC 33331]
Length=124
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/105 (52%), Positives = 73/105 (70%), Gaps = 1/105 (0%)
Query 9 VDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARAYRELESAA 68
VD + ++QLR Q+ + R+G LP G RLPTVR LAG+LG+AANTVA+AYR LE+
Sbjct 7 VDPDSATAPYEQLRAQLSEQTRSGDLPVGYRLPTVRGLAGELGLAANTVAKAYRALEADG 66
Query 69 IVETRGRFGTFI-SRFDPTDAAMAAAAKEYVGVARALGLTKSDAM 112
++ETRGR GTF+ + D A AA+EY AR LGL+++DA+
Sbjct 67 VIETRGRNGTFVAAAGDAAARNAATAAQEYAEHARRLGLSEADAL 111
>gi|297561523|ref|YP_003680497.1| GntR family transcriptional regulator [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296845971|gb|ADH67991.1| transcriptional regulator, GntR family [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length=120
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/79 (60%), Positives = 58/79 (74%), Gaps = 0/79 (0%)
Query 3 LRDWLRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARAYR 62
+ D++RVD + P ++Q+R+ V V G LP G RLPTVR LAGQL VA NTVARAYR
Sbjct 1 MADFIRVDPTSRVPPYEQIRSIVAIAVANGELPVGYRLPTVRALAGQLSVAVNTVARAYR 60
Query 63 ELESAAIVETRGRFGTFIS 81
ELE A +VETRGR GTF++
Sbjct 61 ELEQAGVVETRGRSGTFVA 79
>gi|111022622|ref|YP_705594.1| transcriptional regulator [Rhodococcus jostii RHA1]
gi|110822152|gb|ABG97436.1| possible transcriptional regulator [Rhodococcus jostii RHA1]
Length=120
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/99 (50%), Positives = 67/99 (68%), Gaps = 1/99 (1%)
Query 18 FDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARAYRELESAAIVETRGRFG 77
FDQLR Q+I+ VR+G L GT++PTVR LA ++G+A NTVA+AYREL ++ETRG+ G
Sbjct 14 FDQLRLQIIEQVRSGQLIAGTKIPTVRALAVEVGLAPNTVAKAYRELGEQGVIETRGKQG 73
Query 78 TFI-SRFDPTDAAMAAAAKEYVGVARALGLTKSDAMRYL 115
TFI S DP A AA YV R LG++ + + ++
Sbjct 74 TFIASGGDPIRAGAEKAATRYVQDLRKLGVSDEEILGFV 112
>gi|289772559|ref|ZP_06531937.1| GntR family transcriptional regulator [Streptomyces lividans
TK24]
gi|289702758|gb|EFD70187.1| GntR family transcriptional regulator [Streptomyces lividans
TK24]
Length=121
Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/106 (50%), Positives = 71/106 (67%), Gaps = 1/106 (0%)
Query 7 LRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARAYRELES 66
L++ V G P ++Q+R Q+ + R+GALP G RLPTVR LA LG+AANTVA+AYR LE+
Sbjct 3 LKIHVDDGAPPYEQVRAQISEQARSGALPVGYRLPTVRGLAESLGLAANTVAKAYRALEA 62
Query 67 AAIVETRGRFGTFISRFDPTDAAMAAAAKE-YVGVARALGLTKSDA 111
++ETRGR GTF++ AAA + Y AR LG+++ DA
Sbjct 63 DGVIETRGRNGTFVAAAGSAAQREVAAAAQGYAERARRLGVSEEDA 108
>gi|226365128|ref|YP_002782911.1| GntR family transcriptional regulator [Rhodococcus opacus B4]
gi|226243618|dbj|BAH53966.1| putative GntR family transcriptional regulator [Rhodococcus opacus
B4]
Length=124
Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/99 (50%), Positives = 67/99 (68%), Gaps = 1/99 (1%)
Query 18 FDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARAYRELESAAIVETRGRFG 77
FDQLR Q+I+ VR+G L GT++PTVR LA ++G+A NTVA+AYREL ++ETRG+ G
Sbjct 18 FDQLRLQIIEQVRSGQLIAGTKIPTVRALAVEVGLAPNTVAKAYRELGEQGVIETRGKQG 77
Query 78 TFI-SRFDPTDAAMAAAAKEYVGVARALGLTKSDAMRYL 115
TFI S DP A AA YV R LG++ + + ++
Sbjct 78 TFIASGGDPIRAGAEKAATGYVQELRKLGVSDEEILGFV 116
>gi|21220222|ref|NP_626001.1| GntR family transcriptional regulator [Streptomyces coelicolor
A3(2)]
gi|5531438|emb|CAB50943.1| putative gntR-family transcriptional regulator [Streptomyces
coelicolor A3(2)]
Length=134
Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/109 (49%), Positives = 72/109 (67%), Gaps = 1/109 (0%)
Query 4 RDWLRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARAYRE 63
R L++ V G P ++Q+R Q+ + R+GALP G RLPTVR LA LG+AANTVA+AYR
Sbjct 13 RVTLKIHVDDGAPPYEQVRAQISEQARSGALPVGYRLPTVRGLAESLGLAANTVAKAYRA 72
Query 64 LESAAIVETRGRFGTFISRFDPTDAAMAAAAKE-YVGVARALGLTKSDA 111
LE+ ++ETRGR GTF++ AAA + Y AR LG+++ DA
Sbjct 73 LEADGVIETRGRNGTFVAAAGSAAQREVAAAAQGYAERARRLGVSEEDA 121
>gi|291298890|ref|YP_003510168.1| GntR family transcriptional regulator [Stackebrandtia nassauensis
DSM 44728]
gi|290568110|gb|ADD41075.1| transcriptional regulator, GntR family [Stackebrandtia nassauensis
DSM 44728]
Length=119
Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/107 (46%), Positives = 72/107 (68%), Gaps = 1/107 (0%)
Query 7 LRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARAYRELES 66
L VD + P ++Q+R+++ + LP GTRLPTVR LA LG+A NTVAR+YRELE
Sbjct 3 LAVDNTSPVPPYEQVRSELARQINDHVLPVGTRLPTVRKLADDLGLAPNTVARSYRELEE 62
Query 67 AAIVETRGRFGTFISRF-DPTDAAMAAAAKEYVGVARALGLTKSDAM 112
A ++ETRGR G+F+S D + + AAA++Y R LG+ +++A+
Sbjct 63 AGLIETRGRAGSFVSAAGDVSRQRVNAAAEQYAEAVRRLGIDRAEAL 109
>gi|311744702|ref|ZP_07718499.1| GntR family transcriptional regulator [Aeromicrobium marinum
DSM 15272]
gi|311312011|gb|EFQ81931.1| GntR family transcriptional regulator [Aeromicrobium marinum
DSM 15272]
Length=119
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/107 (50%), Positives = 69/107 (65%), Gaps = 0/107 (0%)
Query 9 VDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARAYRELESAA 68
VD +G+ F+Q+R QV +G L PG +LPTVR LA LG+A NTVARAYRELE+
Sbjct 6 VDPGSGEAPFEQVRRQVAAAATSGTLGPGHKLPTVRQLAADLGLAVNTVARAYRELEADG 65
Query 69 IVETRGRFGTFISRFDPTDAAMAAAAKEYVGVARALGLTKSDAMRYL 115
++ET GR GTFI+ D AAA +V VAR GL + +A+R +
Sbjct 66 VIETHGRRGTFIASTRTADPDATAAAATFVDVARRRGLGRDEAVRLV 112
>gi|256831810|ref|YP_003160537.1| transcriptional regulator, GntR family [Jonesia denitrificans
DSM 20603]
gi|256685341|gb|ACV08234.1| transcriptional regulator, GntR family [Jonesia denitrificans
DSM 20603]
Length=119
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/108 (44%), Positives = 68/108 (63%), Gaps = 1/108 (0%)
Query 6 WLRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARAYRELE 65
+ +D+ +G P F Q++ Q+ID + G LP G +LP +R LA +LG+A NTVAR+YR LE
Sbjct 1 MIHLDLTSGTPPFTQIKRQIIDQISRGQLPVGEKLPPIRTLAQELGLAVNTVARSYRALE 60
Query 66 SAAIVETRGRFGTFIS-RFDPTDAAMAAAAKEYVGVARALGLTKSDAM 112
V T+GR GT +S R + A+A AK YV +AR G + +A+
Sbjct 61 DEGYVVTQGRAGTRVSARAVSKEVALAHHAKAYVAIAREAGASDDEAL 108
>gi|291440560|ref|ZP_06579950.1| GntR-family transcriptional regulator [Streptomyces ghanaensis
ATCC 14672]
gi|291343455|gb|EFE70411.1| GntR-family transcriptional regulator [Streptomyces ghanaensis
ATCC 14672]
Length=128
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 57/75 (76%), Gaps = 0/75 (0%)
Query 7 LRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARAYRELES 66
L++ + G P ++Q+R Q+ + R+GALP G RLPTVR LAG LG+AANTVA+AYR LE+
Sbjct 9 LKIHIDDGAPPYEQVRAQISEQARSGALPVGYRLPTVRGLAGTLGLAANTVAKAYRALEA 68
Query 67 AAIVETRGRFGTFIS 81
++ETRGR GT I+
Sbjct 69 DGVIETRGRNGTVIA 83
>gi|254392383|ref|ZP_05007565.1| GntR-family transcriptional regulator [Streptomyces clavuligerus
ATCC 27064]
gi|326440485|ref|ZP_08215219.1| GntR family transcriptional regulator [Streptomyces clavuligerus
ATCC 27064]
gi|197706052|gb|EDY51864.1| GntR-family transcriptional regulator [Streptomyces clavuligerus
ATCC 27064]
Length=125
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/73 (59%), Positives = 56/73 (77%), Gaps = 0/73 (0%)
Query 9 VDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARAYRELESAA 68
+D + F+QLRTQ+ + R+GALP G RLPTVR LA +LG+AANTVA+AYR LE+
Sbjct 7 IDAASATAPFEQLRTQISERARSGALPVGYRLPTVRGLAEELGLAANTVAKAYRALEADG 66
Query 69 IVETRGRFGTFIS 81
+VETRGR GTF++
Sbjct 67 VVETRGRNGTFVA 79
>gi|295396599|ref|ZP_06806755.1| GntR family transcriptional regulator [Brevibacterium mcbrellneri
ATCC 49030]
gi|294970530|gb|EFG46449.1| GntR family transcriptional regulator [Brevibacterium mcbrellneri
ATCC 49030]
Length=119
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/113 (46%), Positives = 66/113 (59%), Gaps = 7/113 (6%)
Query 6 WLRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARAYRELE 65
LR+D P ++QLR+Q+I + +G LPPG+RLP VR LA LG+A NTVAR YRELE
Sbjct 1 MLRIDPAGATPPYEQLRSQLIQQIESGELPPGSRLPAVRRLASDLGIAPNTVARTYRELE 60
Query 66 SAAIVETRGRFGTFISRFDPTDAAMAAAAKEYVGVARAL---GLTKSDAMRYL 115
+ V+T GR GT +S D + A A AR L G+ A+R L
Sbjct 61 TQGYVKTAGRKGTIVSE----DTSAAPALTATRDCARQLVDMGVDAESAVRML 109
>gi|345014072|ref|YP_004816426.1| GntR family transcriptional regulator [Streptomyces violaceusniger
Tu 4113]
gi|344040421|gb|AEM86146.1| transcriptional regulator, GntR family [Streptomyces violaceusniger
Tu 4113]
Length=126
Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/103 (52%), Positives = 68/103 (67%), Gaps = 1/103 (0%)
Query 7 LRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARAYRELES 66
+ VD A F+QLR Q+ + R+GALP G +LPTVR A +LG+AANTVA+AYR LE+
Sbjct 5 ITVDQDAATAPFEQLRAQIAELARSGALPVGYKLPTVRGFAEELGLAANTVAKAYRALEA 64
Query 67 AAIVETRGRFGTFISRF-DPTDAAMAAAAKEYVGVARALGLTK 108
++ETRGR GTFI+ D A AA+ YV AR LGL +
Sbjct 65 DGVIETRGRHGTFIAAAGDAARRQAAEAAQTYVQRARRLGLDR 107
>gi|294811772|ref|ZP_06770415.1| Putative GntR-family transcriptional regulator [Streptomyces
clavuligerus ATCC 27064]
gi|294324371|gb|EFG06014.1| Putative GntR-family transcriptional regulator [Streptomyces
clavuligerus ATCC 27064]
Length=152
Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/73 (59%), Positives = 56/73 (77%), Gaps = 0/73 (0%)
Query 9 VDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARAYRELESAA 68
+D + F+QLRTQ+ + R+GALP G RLPTVR LA +LG+AANTVA+AYR LE+
Sbjct 34 IDAASATAPFEQLRTQISERARSGALPVGYRLPTVRGLAEELGLAANTVAKAYRALEADG 93
Query 69 IVETRGRFGTFIS 81
+VETRGR GTF++
Sbjct 94 VVETRGRNGTFVA 106
>gi|302518200|ref|ZP_07270542.1| GntR-family transcriptional regulator [Streptomyces sp. SPB78]
gi|302427095|gb|EFK98910.1| GntR-family transcriptional regulator [Streptomyces sp. SPB78]
Length=130
Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/77 (58%), Positives = 58/77 (76%), Gaps = 2/77 (2%)
Query 7 LRVDVKAGKPL--FDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARAYREL 64
L++ V A L ++QLR Q+ + VR+GALP G RLPTVR LA +LG+AANTVA+AYR L
Sbjct 9 LKIAVDAASALAPYEQLRAQIAEQVRSGALPAGYRLPTVRGLAQELGLAANTVAKAYRAL 68
Query 65 ESAAIVETRGRFGTFIS 81
E+ +VETRGR GT ++
Sbjct 69 EADGVVETRGRHGTVVA 85
>gi|29833108|ref|NP_827742.1| GntR family transcriptional regulator [Streptomyces avermitilis
MA-4680]
gi|29610230|dbj|BAC74277.1| putative GntR-family transcriptional regulator [Streptomyces
avermitilis MA-4680]
Length=128
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/75 (55%), Positives = 57/75 (76%), Gaps = 0/75 (0%)
Query 7 LRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARAYRELES 66
L++ ++AG ++Q+R Q+ + R+G LP G RLPTVR LA LG+AANTVA+AYR LES
Sbjct 9 LKIVIEAGGAPYEQVRAQIAEQARSGELPVGYRLPTVRGLAESLGLAANTVAKAYRALES 68
Query 67 AAIVETRGRFGTFIS 81
++ETRGR GTF++
Sbjct 69 DGVIETRGRNGTFVA 83
>gi|296129163|ref|YP_003636413.1| GntR family transcriptional regulator [Cellulomonas flavigena
DSM 20109]
gi|296020978|gb|ADG74214.1| transcriptional regulator, GntR family [Cellulomonas flavigena
DSM 20109]
Length=125
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/117 (48%), Positives = 70/117 (60%), Gaps = 14/117 (11%)
Query 6 WLRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARAYRELE 65
+ VDV +G P+++Q+R QV+ V AG L PG RLPT+R LA LG+A TVARAYRELE
Sbjct 4 HVEVDVTSGVPVYEQVRAQVVAHVAAGRLSPGDRLPTIRALATDLGLAPGTVARAYRELE 63
Query 66 SAAIVETRGRFGTFISRFDPTDAA----------MAAAAKEYVGVARALGLTKSDAM 112
A +V TR R GT ++ DAA AA YV ARA GLT +A+
Sbjct 64 QAGVVATRRRTGTVVA----DDAAGGQDSAAHSAARRAATAYVTAARAAGLTTDEAL 116
>gi|227498145|ref|ZP_03928316.1| transcriptional regulator [Actinomyces urogenitalis DSM 15434]
gi|226832451|gb|EEH64834.1| transcriptional regulator [Actinomyces urogenitalis DSM 15434]
Length=121
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/112 (44%), Positives = 69/112 (62%), Gaps = 2/112 (1%)
Query 7 LRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARAYRELES 66
L VD + +P+F Q+ + V G+L GTRLP+ R LA QLG+A NTVA+AYR LE+
Sbjct 9 LAVDPASAEPVFAQICHDLRRQVEEGSLAAGTRLPSTRALANQLGLAVNTVAKAYRTLEA 68
Query 67 AAIVETRGRFGTFISRFDPTDAAMAAAAKEYVGVARALGLTKSDAMRYLTHV 118
++E RGR GTF+ + A AA+A +V RALG+++ +A L V
Sbjct 69 EGVIEGRGRLGTFVRDQSGSQAQQAASA--FVTQMRALGVSQEEAAELLRRV 118
>gi|116670625|ref|YP_831558.1| GntR family transcriptional regulator [Arthrobacter sp. FB24]
gi|116610734|gb|ABK03458.1| transcriptional regulator, GntR family [Arthrobacter sp. FB24]
Length=126
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/69 (63%), Positives = 51/69 (74%), Gaps = 0/69 (0%)
Query 16 PLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARAYRELESAAIVETRGR 75
PLF+QLR +I+ +GAL PGTRLP VR LA LGVA +TVARAY+ELE+A +V TRGR
Sbjct 20 PLFEQLRLNIIERADSGALAPGTRLPAVRSLATALGVAPHTVARAYKELEAAGVVATRGR 79
Query 76 FGTFISRFD 84
GT I D
Sbjct 80 HGTVICARD 88
>gi|318061681|ref|ZP_07980402.1| GntR family transcriptional regulator [Streptomyces sp. SA3_actG]
gi|318079522|ref|ZP_07986854.1| GntR family transcriptional regulator [Streptomyces sp. SA3_actF]
gi|333028123|ref|ZP_08456187.1| putative GntR-family transcriptional regulator [Streptomyces
sp. Tu6071]
gi|332747975|gb|EGJ78416.1| putative GntR-family transcriptional regulator [Streptomyces
sp. Tu6071]
Length=124
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/77 (56%), Positives = 57/77 (75%), Gaps = 2/77 (2%)
Query 7 LRVDVKAGKPL--FDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARAYREL 64
L++ V A L ++QLR Q+ + R+GALP G RLPTVR LA +LG+AANTVA+AYR L
Sbjct 3 LKIAVDAASALAPYEQLRAQIAEQARSGALPAGYRLPTVRGLAQELGLAANTVAKAYRAL 62
Query 65 ESAAIVETRGRFGTFIS 81
E+ +VETRGR GT ++
Sbjct 63 EADGVVETRGRHGTVVA 79
>gi|302546577|ref|ZP_07298919.1| GntR family transcriptional regulator [Streptomyces hygroscopicus
ATCC 53653]
gi|302464195|gb|EFL27288.1| GntR family transcriptional regulator [Streptomyces himastatinicus
ATCC 53653]
Length=124
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/103 (49%), Positives = 66/103 (65%), Gaps = 1/103 (0%)
Query 7 LRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARAYRELES 66
+ VD A F+Q+R Q+ + R+G LP G +LPTVR A +LG+AANTVA+AYR LES
Sbjct 5 ITVDPDAATAPFEQIRAQIAEQARSGHLPVGYKLPTVRGFAEELGLAANTVAKAYRALES 64
Query 67 AAIVETRGRFGTFISRF-DPTDAAMAAAAKEYVGVARALGLTK 108
++ETRGR GTF++ D A AA+ Y AR LGL +
Sbjct 65 DGVIETRGRHGTFVAAAGDAAGRQAAEAAQTYAQRARRLGLDR 107
>gi|326780239|ref|ZP_08239504.1| transcriptional regulator, GntR family [Streptomyces cf. griseus
XylebKG-1]
gi|326660572|gb|EGE45418.1| transcriptional regulator, GntR family [Streptomyces griseus
XylebKG-1]
Length=124
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/111 (46%), Positives = 72/111 (65%), Gaps = 1/111 (0%)
Query 3 LRDWLRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARAYR 62
+ D + +D +G ++QLR Q+ + R+GALP G RLPTVR A +LG+AANTVA+AYR
Sbjct 1 MTDKIVLDPDSGIAPYEQLRAQLSERARSGALPVGHRLPTVRGFAEELGLAANTVAKAYR 60
Query 63 ELESAAIVETRGRFGTFISRF-DPTDAAMAAAAKEYVGVARALGLTKSDAM 112
LE+ ++ETRGR GTF++ + A AA+ Y A LGLT+ A+
Sbjct 61 ALEADGVIETRGRNGTFVAAAGGAAEQRAATAARLYAETAERLGLTRQQAL 111
>gi|302550396|ref|ZP_07302738.1| GntR family transcriptional regulator [Streptomyces viridochromogenes
DSM 40736]
gi|302468014|gb|EFL31107.1| GntR family transcriptional regulator [Streptomyces viridochromogenes
DSM 40736]
Length=122
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 56/75 (75%), Gaps = 0/75 (0%)
Query 7 LRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARAYRELES 66
L++D+ P ++Q+R ++ + R+G LP G RLPTVR LA LG+AANTVA+AYR LE+
Sbjct 3 LKIDIDDSAPPYEQVRARISEQARSGELPVGYRLPTVRGLAETLGLAANTVAKAYRALEA 62
Query 67 AAIVETRGRFGTFIS 81
++ETRGR GTF++
Sbjct 63 DGVIETRGRHGTFVA 77
>gi|116671563|ref|YP_832496.1| GntR family transcriptional regulator [Arthrobacter sp. FB24]
gi|116611672|gb|ABK04396.1| transcriptional regulator, GntR family [Arthrobacter sp. FB24]
Length=129
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/116 (45%), Positives = 69/116 (60%), Gaps = 11/116 (9%)
Query 9 VDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARAYRELESAA 68
VD+++ P +DQ+RTQ+ + G+L GTRLPTVR LA LG+AA TVARAY+ELE A
Sbjct 7 VDLRSAVPPYDQIRTQISSLIAIGSLAAGTRLPTVRSLAADLGIAAGTVARAYKELEQAG 66
Query 69 IVETRGRFGTFI----SRFDPTDAA----MAAAAKEYVGVARALGL---TKSDAMR 113
++ETR R GT + PT + + AA Y+ RA GL T D +R
Sbjct 67 LIETRRRNGTVVVGVPDSVRPTGGSVPPDLIAAVDRYIAEGRAAGLDDGTLQDILR 122
>gi|297161749|gb|ADI11461.1| GntR family transcriptional regulator [Streptomyces bingchenggensis
BCW-1]
Length=126
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/74 (55%), Positives = 54/74 (73%), Gaps = 0/74 (0%)
Query 7 LRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARAYRELES 66
+ VD + F+Q+R Q+ D R+GALP G +LPTVR A +LG+AANTVA+AYR LES
Sbjct 5 ITVDPDSATAPFEQIRAQIADQARSGALPVGYKLPTVRGFAEELGLAANTVAKAYRALES 64
Query 67 AAIVETRGRFGTFI 80
++ETRGR G+F+
Sbjct 65 DGVIETRGRHGSFV 78
>gi|302524312|ref|ZP_07276654.1| GntR-family transcriptional regulator [Streptomyces sp. AA4]
gi|302433207|gb|EFL05023.1| GntR-family transcriptional regulator [Streptomyces sp. AA4]
Length=117
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/99 (53%), Positives = 66/99 (67%), Gaps = 1/99 (1%)
Query 10 DVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARAYRELESAAI 69
D + P F+Q+RT + + + G L GT+LPTVR LA QLG+A NTVARAYRELE A +
Sbjct 6 DPASSVPPFEQVRTSLANQINDGTLAVGTKLPTVRGLAAQLGIAPNTVARAYRELEEAGL 65
Query 70 VETRGRFGTFI-SRFDPTDAAMAAAAKEYVGVARALGLT 107
+ETRGR GTF+ + D T + AAA Y V R LGL+
Sbjct 66 LETRGRAGTFVGATGDETLSRAQAAAATYAEVIRGLGLS 104
Lambda K H
0.321 0.136 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 128028430332
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40