BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1156
Length=195
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608296|ref|NP_215672.1| hypothetical protein Rv1156 [Mycoba... 392 2e-107
gi|339631221|ref|YP_004722863.1| hypothetical protein MAF_11730 ... 391 4e-107
gi|340626169|ref|YP_004744621.1| hypothetical protein MCAN_11661... 389 8e-107
gi|240173404|ref|ZP_04752062.1| hypothetical protein MkanA1_2908... 329 1e-88
gi|183984266|ref|YP_001852557.1| hypothetical protein MMAR_4296 ... 324 5e-87
gi|254774170|ref|ZP_05215686.1| base excision DNA repair protein... 323 1e-86
gi|41408726|ref|NP_961562.1| hypothetical protein MAP2628c [Myco... 320 8e-86
gi|118616753|ref|YP_905085.1| hypothetical protein MUL_1002 [Myc... 312 2e-83
gi|342861770|ref|ZP_08718416.1| base excision DNA repair protein... 293 8e-78
gi|108801013|ref|YP_641210.1| HhH-GPD domain-containing protein ... 292 2e-77
gi|296170043|ref|ZP_06851647.1| HhH-GPD base excision DNA repair... 288 2e-76
gi|254820687|ref|ZP_05225688.1| base excision DNA repair protein... 285 2e-75
gi|120405508|ref|YP_955337.1| HhH-GPD family protein [Mycobacter... 282 1e-74
gi|118473268|ref|YP_889402.1| base excision DNA repair protein, ... 277 7e-73
gi|169628395|ref|YP_001702044.1| hypothetical protein MAB_1302 [... 272 2e-71
gi|145222735|ref|YP_001133413.1| HhH-GPD family protein [Mycobac... 269 2e-70
gi|333989783|ref|YP_004522397.1| hypothetical protein JDM601_114... 265 4e-69
gi|226363534|ref|YP_002781316.1| hypothetical protein ROP_41240 ... 238 2e-61
gi|111021174|ref|YP_704146.1| hypothetical protein RHA1_ro04197 ... 238 3e-61
gi|226303853|ref|YP_002763811.1| hypothetical protein RER_03640 ... 237 6e-61
gi|229492533|ref|ZP_04386336.1| conserved hypothetical protein [... 237 7e-61
gi|333919780|ref|YP_004493361.1| hypothetical protein AS9A_2112 ... 237 8e-61
gi|229819923|ref|YP_002881449.1| HhH-GPD family protein [Beutenb... 234 3e-60
gi|332669962|ref|YP_004452970.1| HhH-GPD family protein [Cellulo... 233 9e-60
gi|312137841|ref|YP_004005177.1| hhh-gpd family DNA repair prote... 233 2e-59
gi|325676059|ref|ZP_08155741.1| HhH-GPD base excision DNA repair... 231 4e-59
gi|291452778|ref|ZP_06592168.1| conserved hypothetical protein [... 228 5e-58
gi|329938762|ref|ZP_08288158.1| hypothetical protein SGM_3650 [S... 227 6e-58
gi|324998205|ref|ZP_08119317.1| HhH-GPD family protein [Pseudono... 227 8e-58
gi|119961436|ref|YP_945979.1| HhH-GPD superfamily base excision ... 225 2e-57
gi|116668817|ref|YP_829750.1| HhH-GPD family protein [Arthrobact... 224 4e-57
gi|325961812|ref|YP_004239718.1| HhH-GPD superfamily base excisi... 222 2e-56
gi|296129264|ref|YP_003636514.1| HhH-GPD family protein [Cellulo... 221 3e-56
gi|29830715|ref|NP_825349.1| hypothetical protein SAV_4172 [Stre... 220 1e-55
gi|302524138|ref|ZP_07276480.1| HhH-GPD family protein [Streptom... 219 1e-55
gi|167996981|gb|ACA14347.1| hypothetical protein [Streptomyces r... 218 3e-55
gi|269795695|ref|YP_003315150.1| hypothetical protein Sked_24020... 218 4e-55
gi|220911163|ref|YP_002486472.1| HhH-GPD family protein [Arthrob... 217 9e-55
gi|326777944|ref|ZP_08237209.1| HhH-GPD family protein [Streptom... 216 1e-54
gi|345011178|ref|YP_004813532.1| HhH-GPD family protein [Strepto... 216 2e-54
gi|297193436|ref|ZP_06910834.1| HhH-GPD family protein [Streptom... 216 2e-54
gi|182437324|ref|YP_001825043.1| hypothetical protein SGR_3531 [... 215 3e-54
gi|328883844|emb|CCA57083.1| hypothetical protein SVEN_3797 [Str... 215 3e-54
gi|54022243|ref|YP_116485.1| hypothetical protein nfa2790 [Nocar... 213 9e-54
gi|302559800|ref|ZP_07312142.1| conserved hypothetical protein [... 213 9e-54
gi|254384093|ref|ZP_04999438.1| HhH-GPD protein [Streptomyces sp... 213 1e-53
gi|21222450|ref|NP_628229.1| hypothetical protein SCO4047 [Strep... 212 2e-53
gi|300782757|ref|YP_003763048.1| hypothetical protein AMED_0826 ... 211 3e-53
gi|302552538|ref|ZP_07304880.1| HhH-GPD family protein [Streptom... 211 3e-53
gi|297162319|gb|ADI12031.1| hypothetical protein SBI_08913 [Stre... 211 4e-53
>gi|15608296|ref|NP_215672.1| hypothetical protein Rv1156 [Mycobacterium tuberculosis H37Rv]
gi|15840597|ref|NP_335634.1| hypothetical protein MT1191 [Mycobacterium tuberculosis CDC1551]
gi|31792349|ref|NP_854842.1| hypothetical protein Mb1187 [Mycobacterium bovis AF2122/97]
76 more sequence titles
Length=195
Score = 392 bits (1007), Expect = 2e-107, Method: Compositional matrix adjust.
Identities = 194/195 (99%), Positives = 195/195 (100%), Gaps = 0/195 (0%)
Query 1 VPNLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGSFDAGDIADY 60
+PNLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGSFDAGDIADY
Sbjct 1 MPNLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGSFDAGDIADY 60
Query 61 DPDKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLK 120
DPDKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLK
Sbjct 61 DPDKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLK 120
Query 121 GLPGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVRSHK 180
GLPGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVRSHK
Sbjct 121 GLPGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVRSHK 180
Query 181 RQRKAAAKAEGKAPT 195
RQRKAAAKAEGKAPT
Sbjct 181 RQRKAAAKAEGKAPT 195
>gi|339631221|ref|YP_004722863.1| hypothetical protein MAF_11730 [Mycobacterium africanum GM041182]
gi|339330577|emb|CCC26245.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
Length=195
Score = 391 bits (1004), Expect = 4e-107, Method: Compositional matrix adjust.
Identities = 193/195 (99%), Positives = 194/195 (99%), Gaps = 0/195 (0%)
Query 1 VPNLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGSFDAGDIADY 60
+PNLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGSFDAGDIADY
Sbjct 1 MPNLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGSFDAGDIADY 60
Query 61 DPDKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLK 120
DPDKFVALCSERPAIHRFPGSMAKRIQAL QIIVDRYDGDAAALWTAGEPDGNELLRRLK
Sbjct 61 DPDKFVALCSERPAIHRFPGSMAKRIQALTQIIVDRYDGDAAALWTAGEPDGNELLRRLK 120
Query 121 GLPGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVRSHK 180
GLPGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVRSHK
Sbjct 121 GLPGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVRSHK 180
Query 181 RQRKAAAKAEGKAPT 195
RQRKAAAKAEGKAPT
Sbjct 181 RQRKAAAKAEGKAPT 195
>gi|340626169|ref|YP_004744621.1| hypothetical protein MCAN_11661 [Mycobacterium canettii CIPT
140010059]
gi|340004359|emb|CCC43502.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=195
Score = 389 bits (1000), Expect = 8e-107, Method: Compositional matrix adjust.
Identities = 192/195 (99%), Positives = 194/195 (99%), Gaps = 0/195 (0%)
Query 1 VPNLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGSFDAGDIADY 60
+PNLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGSFDAGDIADY
Sbjct 1 MPNLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGSFDAGDIADY 60
Query 61 DPDKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLK 120
DPDKF ALCSERPA+HRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLK
Sbjct 61 DPDKFAALCSERPAVHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLK 120
Query 121 GLPGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVRSHK 180
GLPGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVRSHK
Sbjct 121 GLPGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVRSHK 180
Query 181 RQRKAAAKAEGKAPT 195
RQRKAAAKAEGKAPT
Sbjct 181 RQRKAAAKAEGKAPT 195
>gi|240173404|ref|ZP_04752062.1| hypothetical protein MkanA1_29086 [Mycobacterium kansasii ATCC
12478]
Length=189
Score = 329 bits (843), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 159/188 (85%), Positives = 177/188 (95%), Gaps = 0/188 (0%)
Query 1 VPNLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGSFDAGDIADY 60
+P LQL Q+ AADALL++NPFALLVGMLLDQQVP+ETAFAGPKKIADRMG FDAG+IADY
Sbjct 1 MPKLQLAQDQAADALLDSNPFALLVGMLLDQQVPLETAFAGPKKIADRMGGFDAGEIADY 60
Query 61 DPDKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLK 120
DP+KF ALCSE+PAIHRFPGSMAKRIQALAQ++VDRY GDAAA+WTAG+PDGNELLRRLK
Sbjct 61 DPEKFAALCSEKPAIHRFPGSMAKRIQALAQVVVDRYGGDAAAVWTAGDPDGNELLRRLK 120
Query 121 GLPGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVRSHK 180
GLPGFGEQKARIFLALLGKQYGVTP GW+ AAG +GQPG+Y+SVADIVDA SLGQVRSHK
Sbjct 121 GLPGFGEQKARIFLALLGKQYGVTPPGWREAAGPYGQPGSYISVADIVDARSLGQVRSHK 180
Query 181 RQRKAAAK 188
+Q KA+AK
Sbjct 181 KQMKASAK 188
>gi|183984266|ref|YP_001852557.1| hypothetical protein MMAR_4296 [Mycobacterium marinum M]
gi|183177592|gb|ACC42702.1| conserved protein [Mycobacterium marinum M]
Length=192
Score = 324 bits (830), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 155/179 (87%), Positives = 168/179 (94%), Gaps = 0/179 (0%)
Query 1 VPNLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGSFDAGDIADY 60
+P LQLVQ+PAADALL +NPFALLVGMLLDQQVPMETAFAGPKKIADRMG DAGDIADY
Sbjct 1 MPKLQLVQDPAADALLESNPFALLVGMLLDQQVPMETAFAGPKKIADRMGGLDAGDIADY 60
Query 61 DPDKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLK 120
DPDKF ALCSE+PAIHRFPGSMAKR+Q LAQI+VDRY GDAAA+WTAGEPDG ELL RLK
Sbjct 61 DPDKFAALCSEKPAIHRFPGSMAKRVQTLAQIVVDRYGGDAAAIWTAGEPDGKELLGRLK 120
Query 121 GLPGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVRSH 179
GLPGFGEQKARIFLALLGKQYGVTP+GWQ AAG++GQPGT++SVAD+VDA SLGQVRSH
Sbjct 121 GLPGFGEQKARIFLALLGKQYGVTPEGWQAAAGDYGQPGTHMSVADVVDARSLGQVRSH 179
>gi|254774170|ref|ZP_05215686.1| base excision DNA repair protein, HhH-GPD family protein [Mycobacterium
avium subsp. avium ATCC 25291]
Length=191
Score = 323 bits (827), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 159/179 (89%), Positives = 167/179 (94%), Gaps = 0/179 (0%)
Query 1 VPNLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGSFDAGDIADY 60
+P LQLVQEPAADALL+ NPFALLVGMLLDQQVP+ETAFAGPKKIADRMG DA IADY
Sbjct 1 MPKLQLVQEPAADALLDENPFALLVGMLLDQQVPIETAFAGPKKIADRMGRLDAATIADY 60
Query 61 DPDKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLK 120
DPDKF ALCSERPAIHRFPGSMAKRIQALAQ++VDRYDGDAAALWTAGEPDG ELLRRLK
Sbjct 61 DPDKFAALCSERPAIHRFPGSMAKRIQALAQLLVDRYDGDAAALWTAGEPDGKELLRRLK 120
Query 121 GLPGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVRSH 179
GLPGFGEQKARIFLALLGKQYGVTP GW+ AAGEFG+ GTYLSVADIVDA SLGQVRS+
Sbjct 121 GLPGFGEQKARIFLALLGKQYGVTPPGWREAAGEFGKAGTYLSVADIVDARSLGQVRSY 179
>gi|41408726|ref|NP_961562.1| hypothetical protein MAP2628c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118466984|ref|YP_880539.1| base excision DNA repair protein, HhH-GPD family protein [Mycobacterium
avium 104]
gi|41397084|gb|AAS04945.1| hypothetical protein MAP_2628c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118168271|gb|ABK69168.1| base excision DNA repair protein, HhH-GPD family protein [Mycobacterium
avium 104]
gi|336458693|gb|EGO37654.1| uncharacterized HhH-GPD family protein [Mycobacterium avium subsp.
paratuberculosis S397]
Length=191
Score = 320 bits (820), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 158/179 (89%), Positives = 166/179 (93%), Gaps = 0/179 (0%)
Query 1 VPNLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGSFDAGDIADY 60
+P LQLVQEPAADALL+ NPFALLVGMLLDQQVP+ETAFAGPKKIADRMG DA IADY
Sbjct 1 MPKLQLVQEPAADALLDENPFALLVGMLLDQQVPIETAFAGPKKIADRMGGLDAATIADY 60
Query 61 DPDKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLK 120
DPDKF ALCSERPAIHRFPGSMAKRIQALAQ++VDRY GDAAALWTAGEPDG ELLRRLK
Sbjct 61 DPDKFAALCSERPAIHRFPGSMAKRIQALAQLLVDRYGGDAAALWTAGEPDGKELLRRLK 120
Query 121 GLPGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVRSH 179
GLPGFGEQKARIFLALLGKQYGVTP GW+ AAGEFG+ GTYLSVADIVDA SLGQVRS+
Sbjct 121 GLPGFGEQKARIFLALLGKQYGVTPPGWREAAGEFGKAGTYLSVADIVDARSLGQVRSY 179
>gi|118616753|ref|YP_905085.1| hypothetical protein MUL_1002 [Mycobacterium ulcerans Agy99]
gi|118568863|gb|ABL03614.1| conserved protein [Mycobacterium ulcerans Agy99]
Length=191
Score = 312 bits (799), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 150/177 (85%), Positives = 162/177 (92%), Gaps = 0/177 (0%)
Query 3 NLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGSFDAGDIADYDP 62
NL L Q+P AD LL+ NPFALLVGMLLDQQVPMETAFAGPKKIADRMG DAGDIADYDP
Sbjct 2 NLCLAQDPEADELLSNNPFALLVGMLLDQQVPMETAFAGPKKIADRMGGLDAGDIADYDP 61
Query 63 DKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLKGL 122
DKF ALCSE+PAIHRFPGSMAKR+Q LAQI+VDRY GDAAA+WTAGEPDG ELL RLKGL
Sbjct 62 DKFAALCSEKPAIHRFPGSMAKRVQTLAQIVVDRYGGDAAAIWTAGEPDGKELLGRLKGL 121
Query 123 PGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVRSH 179
PGFGEQKARIFLALLGKQYGV P+GWQ AAG++GQPGT++SVAD+VDA SLGQVRSH
Sbjct 122 PGFGEQKARIFLALLGKQYGVRPEGWQAAAGDYGQPGTHMSVADVVDARSLGQVRSH 178
>gi|342861770|ref|ZP_08718416.1| base excision DNA repair protein, HhH-GPD family protein [Mycobacterium
colombiense CECT 3035]
gi|342130904|gb|EGT84200.1| base excision DNA repair protein, HhH-GPD family protein [Mycobacterium
colombiense CECT 3035]
Length=191
Score = 293 bits (750), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 140/177 (80%), Positives = 159/177 (90%), Gaps = 0/177 (0%)
Query 1 VPNLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGSFDAGDIADY 60
+PNL L +P ADALL+ NPFALLVGM+LDQQVP ETAF GPK+IADRMGS D +IADY
Sbjct 1 MPNLCLAGDPEADALLDENPFALLVGMVLDQQVPFETAFVGPKRIADRMGSLDTAEIADY 60
Query 61 DPDKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLK 120
DPDKF ALCS+RPAIHRFPGSMAKRIQ LAQIIVDRYDGDAA LWTAG+PDG+ELLRR+K
Sbjct 61 DPDKFAALCSQRPAIHRFPGSMAKRIQTLAQIIVDRYDGDAAGLWTAGDPDGSELLRRIK 120
Query 121 GLPGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVR 177
GLPGFG KA+IFLALLGKQYGVTPKGW+ AAG+FG+ G+++SVADIVDA S+G+VR
Sbjct 121 GLPGFGAVKAQIFLALLGKQYGVTPKGWRAAAGDFGKAGSHISVADIVDAQSMGKVR 177
>gi|108801013|ref|YP_641210.1| HhH-GPD domain-containing protein [Mycobacterium sp. MCS]
gi|119870154|ref|YP_940106.1| HhH-GPD family protein [Mycobacterium sp. KMS]
gi|126436849|ref|YP_001072540.1| HhH-GPD family protein [Mycobacterium sp. JLS]
gi|108771432|gb|ABG10154.1| HhH-GPD [Mycobacterium sp. MCS]
gi|119696243|gb|ABL93316.1| HhH-GPD family protein [Mycobacterium sp. KMS]
gi|126236649|gb|ABO00050.1| HhH-GPD family protein [Mycobacterium sp. JLS]
Length=193
Score = 292 bits (747), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 138/177 (78%), Positives = 160/177 (91%), Gaps = 0/177 (0%)
Query 3 NLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGSFDAGDIADYDP 62
LQLVQ+PAADALL +NPFALLVGMLLDQQ PME AFAGPKKIADRMG DA +IA+YDP
Sbjct 3 KLQLVQDPAADALLESNPFALLVGMLLDQQYPMEAAFAGPKKIADRMGGVDAREIAEYDP 62
Query 63 DKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLKGL 122
+KF ALCS PA+HRFPGSMAKRIQALAQ+IVDRYDGDAAALWT+G+PDG E+LRRLK L
Sbjct 63 EKFAALCSTTPAVHRFPGSMAKRIQALAQLIVDRYDGDAAALWTSGDPDGAEVLRRLKAL 122
Query 123 PGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVRSH 179
PGFGEQKA+IFLALLGKQYGVTP+GW+ AAG++G+ GTY+S+AD+ D G+L +VRS+
Sbjct 123 PGFGEQKAKIFLALLGKQYGVTPQGWREAAGDYGKAGTYMSIADVTDPGALEKVRSY 179
>gi|296170043|ref|ZP_06851647.1| HhH-GPD base excision DNA repair family protein [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295895311|gb|EFG75020.1| HhH-GPD base excision DNA repair family protein [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length=192
Score = 288 bits (738), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 140/177 (80%), Positives = 157/177 (89%), Gaps = 0/177 (0%)
Query 3 NLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGSFDAGDIADYDP 62
L L Q+P ADALL+ NP ALL+GM+LDQQVP ETAF+GPKKIADRMG F A +IA+YDP
Sbjct 4 KLWLAQDPEADALLDENPLALLIGMVLDQQVPFETAFSGPKKIADRMGGFGAHEIAEYDP 63
Query 63 DKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLKGL 122
DKF LCSERPAIHRFPGSMA RIQALAQIIVDRYDGDAA LWTAG+PDG ELLRR+KGL
Sbjct 64 DKFAELCSERPAIHRFPGSMAGRIQALAQIIVDRYDGDAAGLWTAGDPDGAELLRRIKGL 123
Query 123 PGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVRSH 179
PGFGE KA+IFLALLGKQYGVTPKGW+ AAG+FG+ GT++SVADIVDA S+ QVRS+
Sbjct 124 PGFGEVKAQIFLALLGKQYGVTPKGWRAAAGQFGKAGTHISVADIVDARSMDQVRSY 180
>gi|254820687|ref|ZP_05225688.1| base excision DNA repair protein, HhH-GPD family protein [Mycobacterium
intracellulare ATCC 13950]
Length=190
Score = 285 bits (729), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 137/175 (79%), Positives = 153/175 (88%), Gaps = 0/175 (0%)
Query 3 NLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGSFDAGDIADYDP 62
L L Q+P ADALL+ NP ALL+GM+LDQQVP ETAF+GPKKIADRMG F A +IA+YDP
Sbjct 2 KLWLAQDPEADALLDENPLALLIGMVLDQQVPFETAFSGPKKIADRMGGFGAHEIAEYDP 61
Query 63 DKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLKGL 122
DKF ALCSERPAIHRFPGSMAKRIQ LAQIIVDRYDGDA LWT+G+PDG ELLRR+K L
Sbjct 62 DKFAALCSERPAIHRFPGSMAKRIQTLAQIIVDRYDGDATGLWTSGDPDGEELLRRIKAL 121
Query 123 PGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVR 177
PGFG KA+IFLALLGKQYGVTPKGW+ AAGEFG+ GT++SVADIVDA S+G VR
Sbjct 122 PGFGAVKAQIFLALLGKQYGVTPKGWRAAAGEFGKAGTHISVADIVDAESMGAVR 176
>gi|120405508|ref|YP_955337.1| HhH-GPD family protein [Mycobacterium vanbaalenii PYR-1]
gi|119958326|gb|ABM15331.1| HhH-GPD family protein [Mycobacterium vanbaalenii PYR-1]
Length=194
Score = 282 bits (722), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 138/191 (73%), Positives = 163/191 (86%), Gaps = 2/191 (1%)
Query 3 NLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGSFDAGDIADYDP 62
L+LVQEPAADALL NPFALLVGMLLDQQ+PME AF GPKKIADRMGSFDA IAD+DP
Sbjct 3 KLKLVQEPAADALLEGNPFALLVGMLLDQQIPMEVAFGGPKKIADRMGSFDAHVIADHDP 62
Query 63 DKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLKGL 122
+ F ALC++ PA+HRFPGSMAKR+QALAQ+IVD Y GDA ALW+ G DG E+LRRLK L
Sbjct 63 EAFAALCAQTPAVHRFPGSMAKRVQALAQVIVDEYGGDATALWSDG-ADGAEVLRRLKAL 121
Query 123 PGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVRSHKRQ 182
PGFGEQKA+IFLALLGKQYGVTPKGW+ AAG++G+ G+++SVAD+ D GSL +VR++K++
Sbjct 122 PGFGEQKAKIFLALLGKQYGVTPKGWRAAAGDYGKAGSHMSVADVTDPGSLQKVRTYKKE 181
Query 183 RKAAAKAEGKA 193
KA K E KA
Sbjct 182 AKARNK-EAKA 191
>gi|118473268|ref|YP_889402.1| base excision DNA repair protein, HhH-GPD family protein [Mycobacterium
smegmatis str. MC2 155]
gi|118174555|gb|ABK75451.1| base excision DNA repair protein, HhH-GPD family protein [Mycobacterium
smegmatis str. MC2 155]
Length=193
Score = 277 bits (708), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 132/177 (75%), Positives = 155/177 (88%), Gaps = 0/177 (0%)
Query 1 VPNLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGSFDAGDIADY 60
+P LQLVQ+P ADALL +NPFALLVGMLLDQQ+PMETAFAGPKK+ADR+G DA IA+Y
Sbjct 1 MPTLQLVQDPDADALLESNPFALLVGMLLDQQIPMETAFAGPKKLADRIGKVDAVHIAEY 60
Query 61 DPDKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLK 120
+PDKF SE PA+HRFPGSMAKR+QALAQ +VD YDGD A+WT G+PDG E+LRRLK
Sbjct 61 NPDKFAEKFSETPAVHRFPGSMAKRVQALAQAVVDDYDGDVTAIWTGGDPDGPEVLRRLK 120
Query 121 GLPGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVR 177
LPGFG+QKARIFLALLGKQYGVTP+GW+ AAG++G+ GTY+SVAD+VDAGSL +VR
Sbjct 121 RLPGFGDQKARIFLALLGKQYGVTPEGWREAAGDYGKAGTYMSVADVVDAGSLQKVR 177
>gi|169628395|ref|YP_001702044.1| hypothetical protein MAB_1302 [Mycobacterium abscessus ATCC 19977]
gi|169240362|emb|CAM61390.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=194
Score = 272 bits (695), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 132/174 (76%), Positives = 147/174 (85%), Gaps = 0/174 (0%)
Query 4 LQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGSFDAGDIADYDPD 63
LQL Q+PAAD LL NP ALL+ MLLDQQ+PME AFAGPKKIADR+G DA IA+YDPD
Sbjct 4 LQLAQDPAADELLEDNPLALLIAMLLDQQIPMEVAFAGPKKIADRIGGIDAHQIAEYDPD 63
Query 64 KFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLKGLP 123
KFVALCSERPAIHRFPGSMAKR+Q LAQ IVD YDG A +W AG+PDG ELL+RLK LP
Sbjct 64 KFVALCSERPAIHRFPGSMAKRVQVLAQEIVDEYDGRAENIWKAGDPDGPELLKRLKALP 123
Query 124 GFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVR 177
GFGEQKA+IFLALLGKQYGV PK W+ AAG +G+ GT+LSVAD+VDA SLG VR
Sbjct 124 GFGEQKAKIFLALLGKQYGVQPKDWRKAAGNYGEKGTHLSVADVVDAESLGLVR 177
>gi|145222735|ref|YP_001133413.1| HhH-GPD family protein [Mycobacterium gilvum PYR-GCK]
gi|315443202|ref|YP_004076081.1| HhH-GPD family protein [Mycobacterium sp. Spyr1]
gi|145215221|gb|ABP44625.1| HhH-GPD family protein [Mycobacterium gilvum PYR-GCK]
gi|315261505|gb|ADT98246.1| uncharacterized HhH-GPD family protein [Mycobacterium sp. Spyr1]
Length=194
Score = 269 bits (687), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 129/175 (74%), Positives = 152/175 (87%), Gaps = 1/175 (0%)
Query 3 NLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGSFDAGDIADYDP 62
LQLVQ+PAAD LL ANPFALLVGMLLDQQ+PME AFAGPKKIADRMGSFDA IAD+DP
Sbjct 3 KLQLVQDPAADELLEANPFALLVGMLLDQQIPMEVAFAGPKKIADRMGSFDAETIADHDP 62
Query 63 DKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLKGL 122
+ F ALC++ PA+HRFPGSM+KR+QALAQ+IVD Y GDA+ALW+ G DG E+LRRLK L
Sbjct 63 EAFTALCAQSPAVHRFPGSMSKRVQALAQVIVDEYGGDASALWSDG-ADGKEVLRRLKAL 121
Query 123 PGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVR 177
PGFGEQKA+IFLALLGKQYGV KGW+ AAG++G+ G+++SVAD+ D GSL +VR
Sbjct 122 PGFGEQKAKIFLALLGKQYGVDAKGWRAAAGDYGKAGSHMSVADVKDPGSLQKVR 176
>gi|333989783|ref|YP_004522397.1| hypothetical protein JDM601_1143 [Mycobacterium sp. JDM601]
gi|333485751|gb|AEF35143.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=193
Score = 265 bits (676), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 129/178 (73%), Positives = 149/178 (84%), Gaps = 0/178 (0%)
Query 1 VPNLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGSFDAGDIADY 60
+P LQLV + ADALL A+PFALLVGMLLDQQVPME AFAGPKKIADRMG D DIA
Sbjct 1 MPKLQLVGDTDADALLGADPFALLVGMLLDQQVPMEVAFAGPKKIADRMGGLDPHDIAGR 60
Query 61 DPDKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLK 120
DP++F ALC+E+PA+HRFPGSMA RIQALA+ ++D+Y GD ALWTAGEPDG E+L+RLK
Sbjct 61 DPEEFAALCAEKPAVHRFPGSMAGRIQALARAVIDQYGGDTTALWTAGEPDGAEVLKRLK 120
Query 121 GLPGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVRS 178
LPGFGEQKARIFLALLGKQY VTP W+ AAG +G+ GT+LS+AD+VD SL QVRS
Sbjct 121 ALPGFGEQKARIFLALLGKQYDVTPPRWRAAAGAYGEDGTHLSIADVVDEASLQQVRS 178
>gi|226363534|ref|YP_002781316.1| hypothetical protein ROP_41240 [Rhodococcus opacus B4]
gi|226242023|dbj|BAH52371.1| hypothetical protein [Rhodococcus opacus B4]
Length=197
Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 111/175 (64%), Positives = 140/175 (80%), Gaps = 0/175 (0%)
Query 3 NLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGSFDAGDIADYDP 62
L LV +P ADALL+++P ALL+GMLLDQQVPMETAFAGPKK+ DR+G + IA+ DP
Sbjct 4 TLNLVGDPDADALLSSDPLALLIGMLLDQQVPMETAFAGPKKLDDRIGGLEVHRIAEMDP 63
Query 63 DKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLKGL 122
D+F A+CS+ PA+HRFPGSMA RIQ+L +V+ YDG ALWT+G+PDG E+L+RLK L
Sbjct 64 DEFAAVCSQTPAVHRFPGSMATRIQSLCAYLVENYDGSVEALWTSGDPDGKEVLKRLKAL 123
Query 123 PGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVR 177
PG+G+QKARIFLALLGKQ GV P GW+ AAG++G G+ S+AD+VD SL +VR
Sbjct 124 PGYGDQKARIFLALLGKQIGVEPTGWREAAGDYGTEGSRRSIADVVDDKSLHEVR 178
>gi|111021174|ref|YP_704146.1| hypothetical protein RHA1_ro04197 [Rhodococcus jostii RHA1]
gi|110820704|gb|ABG95988.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=197
Score = 238 bits (608), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 111/176 (64%), Positives = 140/176 (80%), Gaps = 0/176 (0%)
Query 3 NLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGSFDAGDIADYDP 62
L LV +P ADALL ++P ALL+GMLLDQQVPMETAFAGPKK+ DR+G + IA+ DP
Sbjct 4 TLNLVGDPDADALLASDPLALLIGMLLDQQVPMETAFAGPKKLDDRLGGLEVHRIAEMDP 63
Query 63 DKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLKGL 122
++F A+CS+ PA+HRFPGSMA RIQ+L +V+ YDG ALWT+G+PDG E+L+RLK L
Sbjct 64 EEFAAVCSQTPAVHRFPGSMATRIQSLCAFLVENYDGSVEALWTSGDPDGKEVLKRLKAL 123
Query 123 PGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVRS 178
PG+G+QKARIFLALLGKQ GV PKGW+ AAG++G G+ S+AD+VD SL +VR
Sbjct 124 PGYGDQKARIFLALLGKQIGVEPKGWREAAGDYGTEGSRRSIADVVDDTSLHEVRE 179
>gi|226303853|ref|YP_002763811.1| hypothetical protein RER_03640 [Rhodococcus erythropolis PR4]
gi|226182968|dbj|BAH31072.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length=193
Score = 237 bits (605), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 112/176 (64%), Positives = 138/176 (79%), Gaps = 0/176 (0%)
Query 3 NLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGSFDAGDIADYDP 62
L LV +P ADALL +P ALL+GMLLDQQVPMETAF GPKK+ADR+ D IAD D
Sbjct 4 QLNLVGDPEADALLAEDPLALLIGMLLDQQVPMETAFLGPKKLADRLSGIDVRRIADMDT 63
Query 63 DKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLKGL 122
D+F+A+C+E PA+HRFP SM +RIQ + Q IV+ YDGD AA+WT+G PDG E+L+RLK L
Sbjct 64 DEFIAICAEPPAVHRFPKSMGERIQLMCQFIVENYDGDTAAIWTSGNPDGKEVLKRLKAL 123
Query 123 PGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVRS 178
PG+G+QKARIFLALLGKQ GV PKGW+ AAG++G G+ S+AD+VD SL +VR
Sbjct 124 PGYGDQKARIFLALLGKQIGVEPKGWRQAAGDYGLEGSRRSIADVVDEQSLLEVRE 179
>gi|229492533|ref|ZP_04386336.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|229320519|gb|EEN86337.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=193
Score = 237 bits (604), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 112/176 (64%), Positives = 138/176 (79%), Gaps = 0/176 (0%)
Query 3 NLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGSFDAGDIADYDP 62
L LV +P ADALL +P ALL+GMLLDQQVPMETAF GPKK+ADR+ D IAD D
Sbjct 4 QLNLVGDPEADALLAEDPLALLIGMLLDQQVPMETAFLGPKKLADRLSGIDVRRIADMDT 63
Query 63 DKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLKGL 122
D+F+A+C+E PA+HRFP SM +RIQ + Q IV+ YDGD AA+WT+G PDG E+L+RLK L
Sbjct 64 DEFIAVCAEPPAVHRFPKSMGERIQLMCQFIVENYDGDTAAIWTSGNPDGKEVLKRLKAL 123
Query 123 PGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVRS 178
PG+G+QKARIFLALLGKQ GV PKGW+ AAG++G G+ S+AD+VD SL +VR
Sbjct 124 PGYGDQKARIFLALLGKQIGVEPKGWRQAAGDYGLEGSRRSIADVVDEQSLLEVRE 179
>gi|333919780|ref|YP_004493361.1| hypothetical protein AS9A_2112 [Amycolicicoccus subflavus DQS3-9A1]
gi|333482001|gb|AEF40561.1| hypothetical protein AS9A_2112 [Amycolicicoccus subflavus DQS3-9A1]
Length=183
Score = 237 bits (604), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 112/177 (64%), Positives = 141/177 (80%), Gaps = 0/177 (0%)
Query 12 ADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGSFDAGDIADYDPDKFVALCSE 71
ADALL+++P ALL+GMLLDQQ+PMETAFAGPKK+A+R+ +FDA I DPD+F ALC++
Sbjct 6 ADALLSSDPLALLIGMLLDQQIPMETAFAGPKKLAERLATFDAATITAMDPDEFAALCAQ 65
Query 72 RPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLKGLPGFGEQKAR 131
PA+HRFPG+MAKRIQAL Q + + YDG A A+WT G PDG E+L+RLK LPG+G+QKAR
Sbjct 66 PPAVHRFPGAMAKRIQALCQHLEENYDGKADAVWTQGSPDGREILKRLKTLPGYGDQKAR 125
Query 132 IFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVRSHKRQRKAAAK 188
IFLALLGKQ + GW+ AAG++GQ G S+AD+VD +L +VR KRQ KAA K
Sbjct 126 IFLALLGKQLKIDATGWREAAGDYGQDGARRSIADVVDDQTLQEVRDFKRQMKAAKK 182
>gi|229819923|ref|YP_002881449.1| HhH-GPD family protein [Beutenbergia cavernae DSM 12333]
gi|229565836|gb|ACQ79687.1| HhH-GPD family protein [Beutenbergia cavernae DSM 12333]
Length=193
Score = 234 bits (598), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 116/175 (67%), Positives = 133/175 (76%), Gaps = 0/175 (0%)
Query 3 NLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGSFDAGDIADYDP 62
L L +P AD LL +PFALLVGMLLDQQVPMETAFAGP KIADRMG FD IA+ DP
Sbjct 4 TLWLTGDPDADRLLARDPFALLVGMLLDQQVPMETAFAGPAKIADRMGGFDVRAIAEADP 63
Query 63 DKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLKGL 122
++F LC PA+HRFPGSMA+R+Q LAQ +V YDGD LWT GEPDG E+LRRLK L
Sbjct 64 ERFEELCRTPPAVHRFPGSMARRVQDLAQEVVSTYDGDVTNLWTRGEPDGAEVLRRLKVL 123
Query 123 PGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVR 177
PGFG+QKARIFLALLGKQ +TP GW+ AAG +G+ G S+AD+ D SL QVR
Sbjct 124 PGFGDQKARIFLALLGKQREITPAGWREAAGAYGEDGARRSIADVTDPTSLAQVR 178
>gi|332669962|ref|YP_004452970.1| HhH-GPD family protein [Cellulomonas fimi ATCC 484]
gi|332339000|gb|AEE45583.1| HhH-GPD family protein [Cellulomonas fimi ATCC 484]
Length=191
Score = 233 bits (595), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 110/175 (63%), Positives = 138/175 (79%), Gaps = 0/175 (0%)
Query 3 NLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGSFDAGDIADYDP 62
L L + AAD LL+ +PFALLVGMLLDQQV ME+AFAGP KIA+RMG D ++AD DP
Sbjct 2 TLWLTGDAAADHLLSDDPFALLVGMLLDQQVTMESAFAGPSKIAERMGGLDVHEVADADP 61
Query 63 DKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLKGL 122
++F ALC+ PA+HR+PGSMA RIQA+A+ +V+ Y GD A +WT G+PDG +L+RLK L
Sbjct 62 EQFAALCATPPAVHRYPGSMAGRIQAVARAVVEEYHGDVARIWTTGDPDGATVLKRLKAL 121
Query 123 PGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVR 177
PGFG+QKARIFLALLGKQYGVTP GW+ AAG +G+ G+ S+AD+ D SL +VR
Sbjct 122 PGFGDQKARIFLALLGKQYGVTPDGWREAAGAYGEEGSRRSIADVTDPTSLAEVR 176
>gi|312137841|ref|YP_004005177.1| hhh-gpd family DNA repair protein [Rhodococcus equi 103S]
gi|311887180|emb|CBH46489.1| HhH-GPD family DNA repair protein [Rhodococcus equi 103S]
Length=194
Score = 233 bits (593), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 109/179 (61%), Positives = 139/179 (78%), Gaps = 0/179 (0%)
Query 3 NLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGSFDAGDIADYDP 62
L LV +P ADALL ++P ALL+GMLLDQQVPMETAFAGPKK+ DR+G D IA+ P
Sbjct 4 TLNLVGDPEADALLASDPLALLIGMLLDQQVPMETAFAGPKKLDDRLGGLDVHKIAEMSP 63
Query 63 DKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLKGL 122
D F+A+C++ PA+HRFP SM +RIQ+L IV+ YDGD AA+WT+G P G E+L+RLK L
Sbjct 64 DDFIAVCAQPPAVHRFPKSMGERIQSLCGYIVEHYDGDTAAIWTSGRPSGKEVLKRLKAL 123
Query 123 PGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVRSHKR 181
PG+G+QKARIFLALLGKQ GV P+GW+ AAG +G G+ S+AD+VD +L +VR K+
Sbjct 124 PGYGDQKARIFLALLGKQIGVQPEGWREAAGAYGDEGSRRSIADVVDRQTLLEVREFKQ 182
>gi|325676059|ref|ZP_08155741.1| HhH-GPD base excision DNA repair family protein [Rhodococcus
equi ATCC 33707]
gi|325553099|gb|EGD22779.1| HhH-GPD base excision DNA repair family protein [Rhodococcus
equi ATCC 33707]
Length=194
Score = 231 bits (590), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 108/179 (61%), Positives = 138/179 (78%), Gaps = 0/179 (0%)
Query 3 NLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGSFDAGDIADYDP 62
L LV +P AD LL ++P ALL+GMLLDQQVPMETAFAGPKK+ DR+G D IA+ P
Sbjct 4 TLNLVGDPEADTLLASDPLALLIGMLLDQQVPMETAFAGPKKLDDRLGGLDVHKIAEMSP 63
Query 63 DKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLKGL 122
D F+A+C++ PA+HRFP SM +RIQ+L IV+ YDGD AA+WT+G P G E+L+RLK L
Sbjct 64 DDFIAVCAQPPAVHRFPKSMGERIQSLCGYIVEHYDGDTAAIWTSGRPSGKEVLKRLKAL 123
Query 123 PGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVRSHKR 181
PG+G+QKARIFLALLGKQ GV P+GW+ AAG +G G+ S+AD+VD +L +VR K+
Sbjct 124 PGYGDQKARIFLALLGKQIGVQPEGWREAAGAYGDEGSRRSIADVVDRQTLLEVREFKQ 182
>gi|291452778|ref|ZP_06592168.1| conserved hypothetical protein [Streptomyces albus J1074]
gi|291355727|gb|EFE82629.1| conserved hypothetical protein [Streptomyces albus J1074]
Length=197
Score = 228 bits (580), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 120/189 (64%), Positives = 141/189 (75%), Gaps = 3/189 (1%)
Query 3 NLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGS--FDAGDIADY 60
L+L QEP ADALL+ +P A LVGMLLDQQVPME AF+GP IA RMG+ DA +IA Y
Sbjct 4 TLRLAQEPRADALLSRSPLADLVGMLLDQQVPMEWAFSGPYTIARRMGADDLDAHEIAAY 63
Query 61 DPDKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLK 120
DPD+F AL S +PA+HR+PGSMA+R+Q L Q +VD YDGDA ALW DG ELL RLK
Sbjct 64 DPDEFAALLSAKPAVHRYPGSMARRVQQLCQYLVDHYDGDAEALWR-DVADGEELLGRLK 122
Query 121 GLPGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVRSHK 180
LPG+G QKA+IFLALLGKQ GV P GW+ AAG +GQ Y SVADI SL +VR+HK
Sbjct 123 ALPGYGPQKAQIFLALLGKQLGVRPAGWREAAGVYGQEHAYRSVADITGPESLARVRAHK 182
Query 181 RQRKAAAKA 189
++ K AAKA
Sbjct 183 QEMKRAAKA 191
>gi|329938762|ref|ZP_08288158.1| hypothetical protein SGM_3650 [Streptomyces griseoaurantiacus
M045]
gi|329302253|gb|EGG46145.1| hypothetical protein SGM_3650 [Streptomyces griseoaurantiacus
M045]
Length=246
Score = 227 bits (579), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 117/190 (62%), Positives = 141/190 (75%), Gaps = 3/190 (1%)
Query 3 NLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGS--FDAGDIADY 60
L L Q+P ADALL +P A L+GMLLDQQVPME AFAGP +A RMG+ DA DIA Y
Sbjct 4 TLHLAQQPDADALLGRSPLAALIGMLLDQQVPMEWAFAGPYTLARRMGADDLDAHDIAAY 63
Query 61 DPDKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLK 120
P++F AL S +PA+HR+PGSMAKRIQ L +V+RYDGDA A+W+ DG ELL RLK
Sbjct 64 APEEFAALLSAKPAVHRYPGSMAKRIQQLCAFLVERYDGDAEAVWS-NVTDGAELLARLK 122
Query 121 GLPGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVRSHK 180
LPGFG QKA+IFLALLGK+ GV P+GW+ AAG +G+P + SVADI SL VR+HK
Sbjct 123 ELPGFGAQKAQIFLALLGKRLGVRPEGWREAAGAYGEPDAFRSVADITGPKSLALVRAHK 182
Query 181 RQRKAAAKAE 190
++ K AAKAE
Sbjct 183 QEMKTAAKAE 192
>gi|324998205|ref|ZP_08119317.1| HhH-GPD family protein [Pseudonocardia sp. P1]
Length=196
Score = 227 bits (578), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 107/178 (61%), Positives = 138/178 (78%), Gaps = 0/178 (0%)
Query 1 VPNLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGSFDAGDIADY 60
+ + + QEP ADALL P ALL+GMLLDQQ+ ME AF GP+K+ DR+G D IAD+
Sbjct 1 MTGICIAQEPEADALLGREPLALLIGMLLDQQIQMEVAFRGPQKLHDRLGGLDVRVIADH 60
Query 61 DPDKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLK 120
DP +F L + PAIHR+ GSMAKR+Q + + IVD +DGD AA+WT G+PDG E+LRRLK
Sbjct 61 DPAEFATLATTPPAIHRYGGSMAKRVQEMCRAIVDDWDGDPAAIWTRGDPDGREVLRRLK 120
Query 121 GLPGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVRS 178
LPG+GEQKA+IF+A+LGKQYGVTP+GW+ AAG++G+ GT LS AD+VDA +L +VR
Sbjct 121 ALPGYGEQKAKIFVAILGKQYGVTPEGWREAAGDYGKDGTRLSAADVVDAQTLVEVRD 178
>gi|119961436|ref|YP_945979.1| HhH-GPD superfamily base excision DNA repair protein [Arthrobacter
aurescens TC1]
gi|119948295|gb|ABM07206.1| putative HhH-GPD superfamily base excision DNA repair protein
[Arthrobacter aurescens TC1]
Length=194
Score = 225 bits (574), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 110/175 (63%), Positives = 136/175 (78%), Gaps = 0/175 (0%)
Query 3 NLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGSFDAGDIADYDP 62
L + + AAD LL+ + FALL GMLLDQQV ME+AFAGP+KI R+GS + G IA+YDP
Sbjct 2 ELHITGDAAADQLLSDDAFALLTGMLLDQQVTMESAFAGPEKIRTRLGSLEPGTIAEYDP 61
Query 63 DKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLKGL 122
FV + ERPA+HRFPGSMA R+QALA+ + +DG+AAA+WT+G PDG E+LRRLK L
Sbjct 62 AGFVEVFKERPAVHRFPGSMAARVQALAETVHREWDGNAAAIWTSGNPDGPEVLRRLKAL 121
Query 123 PGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVR 177
PGFGEQKA+IFLALLGKQ + GW+ AAG +G+ G+YLSVADIVD SL +VR
Sbjct 122 PGFGEQKAKIFLALLGKQCDLKADGWREAAGHYGEEGSYLSVADIVDPESLVKVR 176
>gi|116668817|ref|YP_829750.1| HhH-GPD family protein [Arthrobacter sp. FB24]
gi|116608926|gb|ABK01650.1| HhH-GPD family protein [Arthrobacter sp. FB24]
Length=194
Score = 224 bits (572), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 110/175 (63%), Positives = 135/175 (78%), Gaps = 0/175 (0%)
Query 3 NLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGSFDAGDIADYDP 62
L + +PAAD LL+ + FALL GMLLDQQV ME+AFAGP+KI R+GS D IA Y+P
Sbjct 2 ELHITGDPAADKLLSDDAFALLTGMLLDQQVTMESAFAGPEKIRTRIGSMDPAAIAGYNP 61
Query 63 DKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLKGL 122
FV + ERPA+HRFPGSMA R+QALA+ + ++GDA A+WT G+PDG E+LRRLK L
Sbjct 62 QDFVEMFKERPAVHRFPGSMAGRVQALAETVHQDWNGDATAIWTQGDPDGPEVLRRLKAL 121
Query 123 PGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVR 177
PGFGEQKA+IFLALLGKQ G+ +GW+ AAG +GQ +YLSVADIVD SL +VR
Sbjct 122 PGFGEQKAKIFLALLGKQCGLQAEGWREAAGHYGQQDSYLSVADIVDPESLTKVR 176
>gi|325961812|ref|YP_004239718.1| HhH-GPD superfamily base excision DNA repair protein [Arthrobacter
phenanthrenivorans Sphe3]
gi|323467899|gb|ADX71584.1| HhH-GPD superfamily base excision DNA repair protein [Arthrobacter
phenanthrenivorans Sphe3]
Length=191
Score = 222 bits (565), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 108/175 (62%), Positives = 132/175 (76%), Gaps = 0/175 (0%)
Query 3 NLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGSFDAGDIADYDP 62
L + +PAAD LL+ + FALL GMLLDQQV ME+AFAGP+KI R+GS IA +P
Sbjct 2 ELHITGDPAADKLLSEDAFALLTGMLLDQQVTMESAFAGPEKIRSRIGSMKPEAIAAQEP 61
Query 63 DKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLKGL 122
FV + ERPA+HRFPGSMA R+QALA+ + +DGDA +WT G+PDG E+LRRLK L
Sbjct 62 QAFVEMFKERPAVHRFPGSMAARVQALAETVQSEWDGDATLIWTKGDPDGAEVLRRLKAL 121
Query 123 PGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVR 177
PGFGEQKA+IFLALLGKQ G+ GW+ AAG +G+ G+YLSVADIVD SL +VR
Sbjct 122 PGFGEQKAKIFLALLGKQCGLQAPGWREAAGHYGEEGSYLSVADIVDPESLAKVR 176
>gi|296129264|ref|YP_003636514.1| HhH-GPD family protein [Cellulomonas flavigena DSM 20109]
gi|296021079|gb|ADG74315.1| HhH-GPD family protein [Cellulomonas flavigena DSM 20109]
Length=190
Score = 221 bits (564), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 109/176 (62%), Positives = 136/176 (78%), Gaps = 1/176 (0%)
Query 3 NLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGSFDAGDIADYDP 62
L + + AAD LL+++PFALLVGMLLDQQV ME+AFAGP KI+DRMG +D IAD DP
Sbjct 2 TLWMTGDDAADHLLDSDPFALLVGMLLDQQVAMESAFAGPAKISDRMGGWDVHRIADADP 61
Query 63 DKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLKGL 122
++F ALC+ PA+HR+PGSMA RIQA+A+ +VD +DGD +WT GEPDG +L+RLK L
Sbjct 62 EEFAALCATPPAVHRYPGSMAGRIQAVARAVVDEHDGDVTRIWTEGEPDGASVLQRLKAL 121
Query 123 PGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVRS 178
PGFG+QKARIFLALLGKQ GV P GW+ AAG +G + S+AD+ DA SL +VR
Sbjct 122 PGFGDQKARIFLALLGKQRGVQPAGWREAAGAYGDD-EFRSIADVRDADSLVKVRE 176
>gi|29830715|ref|NP_825349.1| hypothetical protein SAV_4172 [Streptomyces avermitilis MA-4680]
gi|29607828|dbj|BAC71884.1| hypothetical protein [Streptomyces avermitilis MA-4680]
Length=208
Score = 220 bits (560), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 110/182 (61%), Positives = 135/182 (75%), Gaps = 3/182 (1%)
Query 3 NLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGS--FDAGDIADY 60
L L Q+P AD LL +P A+++GMLLDQQVPME AFAGP IA RMG+ DA +IA Y
Sbjct 10 TLHLAQQPEADELLGRSPLAVMIGMLLDQQVPMEWAFAGPYTIAQRMGTDDLDAHEIAAY 69
Query 61 DPDKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLK 120
DP+ F L S +PA+HR+PGSMAKRIQ L Q +V+ Y GDA+A+W E G ELLRRLK
Sbjct 70 DPEAFAELLSRKPAVHRYPGSMAKRIQQLCQYLVEHYGGDASAVWEGVE-SGAELLRRLK 128
Query 121 GLPGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVRSHK 180
LPGFG QKA+IFLALLGKQ+GV P GW+ AAG +G+P + SVADI SL +VR+HK
Sbjct 129 ELPGFGAQKAQIFLALLGKQFGVRPPGWREAAGPYGEPKAFRSVADITGPESLAKVRAHK 188
Query 181 RQ 182
++
Sbjct 189 QE 190
>gi|302524138|ref|ZP_07276480.1| HhH-GPD family protein [Streptomyces sp. AA4]
gi|302433033|gb|EFL04849.1| HhH-GPD family protein [Streptomyces sp. AA4]
Length=193
Score = 219 bits (559), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 110/177 (63%), Positives = 131/177 (75%), Gaps = 2/177 (1%)
Query 3 NLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGSFDAGDIADYDP 62
L L +PAAD LLN +PFALL GMLLDQQ PME AFAGP+KIADRM FD IA D
Sbjct 4 ELHLTGDPAADKLLNDDPFALLTGMLLDQQYPMEHAFAGPRKIADRMDGFDLRKIAATDV 63
Query 63 DKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAG--EPDGNELLRRLK 120
DKFV +C PAIHR+ GSMA+R+ ALA I++ YDG +W G +PDG E+L+RLK
Sbjct 64 DKFVEMCVVPPAIHRYGGSMARRVHALALHIIENYDGRTEGIWLDGRPKPDGEEVLKRLK 123
Query 121 GLPGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVR 177
LPGFGEQKA+IFLALLGKQ GV PKGW+ AAG +G G+ S+AD+ DA +LG+VR
Sbjct 124 ALPGFGEQKAKIFLALLGKQRGVAPKGWREAAGAYGDRGSRRSIADVTDAKTLGEVR 180
>gi|167996981|gb|ACA14347.1| hypothetical protein [Streptomyces rimofaciens]
Length=241
Score = 218 bits (556), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 108/181 (60%), Positives = 141/181 (78%), Gaps = 3/181 (1%)
Query 4 LQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMG--SFDAGDIADYD 61
L+L Q+P ADALL+ +P A LVGMLLDQQ+PME AF GP IA R+G DA +IA YD
Sbjct 49 LRLAQQPDADALLSRSPLAALVGMLLDQQIPMEWAFTGPYTIARRLGRDDLDAHEIAAYD 108
Query 62 PDKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLKG 121
P+ F ALC+E+PA+HR+PGSMA R+Q L + +V+ YDGDA+A+W+ G G ELL RL+
Sbjct 109 PEAFAALCAEKPAVHRYPGSMAGRVQQLCRHLVETYDGDASAVWS-GAATGRELLERLQA 167
Query 122 LPGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVRSHKR 181
LPGFG+QKA+IFLALLGK+ GVTP+GW+ AAG +G+ G+Y SVADI SL +VR++K+
Sbjct 168 LPGFGKQKAQIFLALLGKRLGVTPEGWREAAGSYGEAGSYRSVADITGPESLDKVRAYKQ 227
Query 182 Q 182
+
Sbjct 228 E 228
>gi|269795695|ref|YP_003315150.1| hypothetical protein Sked_24020 [Sanguibacter keddieii DSM 10542]
gi|269097880|gb|ACZ22316.1| uncharacterized HhH-GPD family protein [Sanguibacter keddieii
DSM 10542]
Length=194
Score = 218 bits (555), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 106/176 (61%), Positives = 130/176 (74%), Gaps = 0/176 (0%)
Query 3 NLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGSFDAGDIADYDP 62
+L L +P AD LL+ +PFALLVGMLLDQQV ME+AFAGP+K+A+RMG D IA+ DP
Sbjct 4 DLWLTGDPEADRLLSDDPFALLVGMLLDQQVTMESAFAGPQKLAERMGGLDVRKIAEADP 63
Query 63 DKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLKGL 122
D+F LC+ +PA+HR+PGSMA RIQA+AQ + Y GD LWT +PDG +LRRLK L
Sbjct 64 DEFSGLCATKPAVHRYPGSMAGRIQAVAQEVQATYGGDVTRLWTDDDPDGTTVLRRLKDL 123
Query 123 PGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVRS 178
PGFG QKA IFLALLGKQYGV P GW+ AAG +G S+AD+ D SL +VR+
Sbjct 124 PGFGAQKASIFLALLGKQYGVQPAGWREAAGSYGDADARRSIADVTDEQSLEEVRT 179
>gi|220911163|ref|YP_002486472.1| HhH-GPD family protein [Arthrobacter chlorophenolicus A6]
gi|219858041|gb|ACL38383.1| HhH-GPD family protein [Arthrobacter chlorophenolicus A6]
Length=195
Score = 217 bits (552), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 106/175 (61%), Positives = 133/175 (76%), Gaps = 0/175 (0%)
Query 3 NLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGSFDAGDIADYDP 62
L + +PAAD LL+ + FALL GMLLDQQV ME+AFAGP+KI R+GS IA +DP
Sbjct 5 ELHITGDPAADKLLSEDAFALLTGMLLDQQVTMESAFAGPEKIRTRIGSVSPEAIAGHDP 64
Query 63 DKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLKGL 122
FV + ERPA+HRFPGSMA R+QALA+ + ++GDA A+WT G+P G E+L+RLK L
Sbjct 65 QAFVEMFKERPAVHRFPGSMAARVQALAEAVQSDWNGDATAIWTQGDPSGAEVLKRLKAL 124
Query 123 PGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVR 177
PGFG+QKA+IFLALLGKQ G+ GW+ AAG +G+ G+YLSVADIVD SL +VR
Sbjct 125 PGFGDQKAKIFLALLGKQRGLQAPGWREAAGHYGEDGSYLSVADIVDPESLVKVR 179
>gi|326777944|ref|ZP_08237209.1| HhH-GPD family protein [Streptomyces cf. griseus XylebKG-1]
gi|326658277|gb|EGE43123.1| HhH-GPD family protein [Streptomyces griseus XylebKG-1]
Length=224
Score = 216 bits (551), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 108/177 (62%), Positives = 131/177 (75%), Gaps = 3/177 (1%)
Query 3 NLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGS--FDAGDIADY 60
L++ Q P AD LL +P A LVGMLLDQQVPME AF GP +A+RMGS DAG IA Y
Sbjct 15 TLRIAQNPEADELLGRSPLAALVGMLLDQQVPMEWAFTGPYTLAERMGSDDLDAGRIAAY 74
Query 61 DPDKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLK 120
DPD F L + +PA+HR+PGSMA+R+Q L + +V YDGDA+A+W G GNELL+RL
Sbjct 75 DPDAFTELFTTKPALHRYPGSMAQRVQQLCRFLVTEYDGDASAVWR-GASTGNELLKRLN 133
Query 121 GLPGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVR 177
LPGFGEQKARIFLALLGKQ+GV P GW+ AAG +G+ G++ SVADI SL +VR
Sbjct 134 ALPGFGEQKARIFLALLGKQFGVRPTGWREAAGPYGEAGSHRSVADITGPESLAEVR 190
>gi|345011178|ref|YP_004813532.1| HhH-GPD family protein [Streptomyces violaceusniger Tu 4113]
gi|344037527|gb|AEM83252.1| HhH-GPD family protein [Streptomyces violaceusniger Tu 4113]
Length=206
Score = 216 bits (549), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 109/188 (58%), Positives = 137/188 (73%), Gaps = 3/188 (1%)
Query 3 NLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGS--FDAGDIADY 60
L+L Q+P ADALL +P AL++GMLLDQQVPME AF+GP IA R+G DA +IA Y
Sbjct 12 RLRLAQQPEADALLERDPLALMIGMLLDQQVPMEWAFSGPYTIAGRLGRDRLDAREIAAY 71
Query 61 DPDKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLK 120
DP++F AL SE+PA+HR+PG+MA R+Q L + + YDGD A+W G ELLRRL
Sbjct 72 DPERFAALLSEKPAVHRYPGAMAGRVQQLCGYLAEHYDGDPTAMWRDAS-SGEELLRRLN 130
Query 121 GLPGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVRSHK 180
LPGFG+QKA+IFLALLGK+ GV PKGW+ AAG +G+ G Y SVADI SL +VR+HK
Sbjct 131 ELPGFGKQKAQIFLALLGKRLGVRPKGWREAAGSYGEEGAYRSVADITGPESLDKVRAHK 190
Query 181 RQRKAAAK 188
++ K AK
Sbjct 191 QELKRQAK 198
>gi|297193436|ref|ZP_06910834.1| HhH-GPD family protein [Streptomyces pristinaespiralis ATCC 25486]
gi|197723181|gb|EDY67089.1| HhH-GPD family protein [Streptomyces pristinaespiralis ATCC 25486]
Length=222
Score = 216 bits (549), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 105/182 (58%), Positives = 133/182 (74%), Gaps = 3/182 (1%)
Query 3 NLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGS--FDAGDIADY 60
+ L Q+P AD LL +P A L+GMLLDQQ+PME AF GP +A R+G+ DA +IA Y
Sbjct 4 TIHLAQQPEADELLGRSPLAALIGMLLDQQIPMEWAFTGPYTVAQRLGTDDLDAAEIAAY 63
Query 61 DPDKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLK 120
DPD F L ERPA+HR+P SMAKR+Q L + +VD Y GDA+A+WT DG +LL RLK
Sbjct 64 DPDAFTELLRERPAVHRYPASMAKRVQELCRFLVDEYGGDASAVWTEA-ADGADLLARLK 122
Query 121 GLPGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVRSHK 180
LPGFGEQKA+IFLALLGKQYGV P+GW+ AAG +G+ +Y S ADI SL +VR++K
Sbjct 123 ALPGFGEQKAQIFLALLGKQYGVRPEGWREAAGAYGEKDSYRSAADITGPESLARVRAYK 182
Query 181 RQ 182
++
Sbjct 183 QE 184
>gi|182437324|ref|YP_001825043.1| hypothetical protein SGR_3531 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178465840|dbj|BAG20360.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
NBRC 13350]
Length=221
Score = 215 bits (548), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 108/177 (62%), Positives = 131/177 (75%), Gaps = 3/177 (1%)
Query 3 NLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGS--FDAGDIADY 60
L++ Q P AD LL +P A LVGMLLDQQVPME AF GP +A+RMGS DAG IA Y
Sbjct 15 TLRIAQNPEADELLGRSPLAALVGMLLDQQVPMEWAFTGPYTLAERMGSDDLDAGRIAAY 74
Query 61 DPDKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLK 120
DPD F L + +PA+HR+PGSMA+R+Q L + +V YDGDA+A+W G GNELL+RL
Sbjct 75 DPDAFTELFTTKPALHRYPGSMAQRVQQLCRFLVAEYDGDASAVWR-GASTGNELLKRLN 133
Query 121 GLPGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVR 177
LPGFGEQKARIFLALLGKQ+GV P GW+ AAG +G+ G++ SVADI SL +VR
Sbjct 134 ALPGFGEQKARIFLALLGKQFGVRPTGWREAAGPYGEAGSHRSVADITGPESLAEVR 190
>gi|328883844|emb|CCA57083.1| hypothetical protein SVEN_3797 [Streptomyces venezuelae ATCC
10712]
Length=214
Score = 215 bits (547), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 108/183 (60%), Positives = 136/183 (75%), Gaps = 3/183 (1%)
Query 2 PNLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGS--FDAGDIAD 59
P + L Q+P ADALL +P A LVGMLLDQQVPME AF+GP IA R+G+ DA +IA
Sbjct 14 PEIHLAQQPDADALLGRSPLAALVGMLLDQQVPMEWAFSGPYTIASRLGADDLDAHEIAA 73
Query 60 YDPDKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRL 119
DP++F AL SE+PA+HR+PGSMA+R+Q L + +V+ Y GDA A+W A G ELL RL
Sbjct 74 RDPEEFAALLSEKPAVHRYPGSMAQRVQQLCRFLVEEYGGDARAVW-ADAATGKELLARL 132
Query 120 KGLPGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVRSH 179
+ LPGFG+QKA+IFLALLGKQYGV P GW+ AAG +G+ G Y S ADI SL +VR+H
Sbjct 133 QALPGFGKQKAQIFLALLGKQYGVRPTGWREAAGAYGEQGAYRSAADITGPESLAKVRAH 192
Query 180 KRQ 182
K++
Sbjct 193 KQE 195
>gi|54022243|ref|YP_116485.1| hypothetical protein nfa2790 [Nocardia farcinica IFM 10152]
gi|54013751|dbj|BAD55121.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=193
Score = 213 bits (543), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 102/176 (58%), Positives = 130/176 (74%), Gaps = 0/176 (0%)
Query 3 NLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGSFDAGDIADYDP 62
L L QEP AD LL+ +PFALL GMLLDQQ P+E AF GP+KIA+RM FD IA+ DP
Sbjct 4 TLCLAQEPEADKLLSEDPFALLTGMLLDQQYPLEHAFRGPRKIAERMDGFDIRRIAEADP 63
Query 63 DKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLKGL 122
+F LC+ PAIHR+ SMA+R Q LA+ +++ YDGD +W+ G+PDG +LRRL+ L
Sbjct 64 QEFEELCATPPAIHRYGRSMARRTQDLARYVLEHYDGDTTRIWSEGDPDGATVLRRLEDL 123
Query 123 PGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVRS 178
PG+G+QKARIFLALLGKQ GV PKGW+ AAG++ +P + S ADI D SL +VR+
Sbjct 124 PGYGKQKARIFLALLGKQLGVRPKGWEKAAGDYAEPNSRRSAADITDGQSLLEVRA 179
>gi|302559800|ref|ZP_07312142.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
gi|302477418|gb|EFL40511.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
Length=203
Score = 213 bits (543), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 107/183 (59%), Positives = 135/183 (74%), Gaps = 3/183 (1%)
Query 3 NLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMG--SFDAGDIADY 60
L L Q+P ADALL +P A L GMLLDQQ+PME AF GP IA R+G DA +IA Y
Sbjct 4 TLHLAQDPDADALLGRSPLAALTGMLLDQQIPMEWAFKGPATIARRLGGEDLDAHEIAAY 63
Query 61 DPDKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLK 120
DP+ F AL +E+PA+HR+PGSMA R+Q L + +V+ YDGDA A+W G DG +LL+RL+
Sbjct 64 DPEAFAALLAEKPAVHRYPGSMAGRVQQLCRYLVEHYDGDAEAVWR-GVTDGGDLLKRLR 122
Query 121 GLPGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVRSHK 180
LPGFGEQKARIFLALLGKQ GV P GW+ AAG +G+ ++ SVADI SL +VR+HK
Sbjct 123 ELPGFGEQKARIFLALLGKQLGVRPTGWREAAGAYGEEKSFRSVADITGPESLAKVRAHK 182
Query 181 RQR 183
+++
Sbjct 183 QEQ 185
>gi|254384093|ref|ZP_04999438.1| HhH-GPD protein [Streptomyces sp. Mg1]
gi|194342983|gb|EDX23949.1| HhH-GPD protein [Streptomyces sp. Mg1]
Length=200
Score = 213 bits (542), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 108/182 (60%), Positives = 135/182 (75%), Gaps = 3/182 (1%)
Query 3 NLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGS--FDAGDIADY 60
++L Q+P ADALL +P A LVGMLLDQQVPME AF+GP IA+R+G+ DA IA Y
Sbjct 6 TMRLAQQPEADALLARSPLAALVGMLLDQQVPMEWAFSGPYTIAERLGADDLDAHAIAAY 65
Query 61 DPDKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLK 120
DP+ F AL S +PA+HR+PGSMAKRIQ L +V+ YDGDA A+W G G E+LRRLK
Sbjct 66 DPEAFAALLSRKPAVHRYPGSMAKRIQQLCAYLVEHYDGDAEAVWK-GVGTGAEVLRRLK 124
Query 121 GLPGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVRSHK 180
LPG+GEQKA+IFLA+LGK++GV PKGW+ AAG +G Y S ADI SL +VR+HK
Sbjct 125 ELPGYGEQKAQIFLAMLGKRFGVRPKGWREAAGGYGPANVYRSAADITGPESLAKVRAHK 184
Query 181 RQ 182
++
Sbjct 185 QE 186
>gi|21222450|ref|NP_628229.1| hypothetical protein SCO4047 [Streptomyces coelicolor A3(2)]
gi|289770368|ref|ZP_06529746.1| HhH-GPD family protein [Streptomyces lividans TK24]
gi|13122140|emb|CAC32318.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
gi|289700567|gb|EFD67996.1| HhH-GPD family protein [Streptomyces lividans TK24]
Length=197
Score = 212 bits (540), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 108/182 (60%), Positives = 135/182 (75%), Gaps = 3/182 (1%)
Query 3 NLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGS--FDAGDIADY 60
L L Q+P AD LL +P A LVGMLLDQQVPME AF GP IA RMG+ DA DIA Y
Sbjct 4 TLHLAQDPEADELLGRSPLAALVGMLLDQQVPMEWAFKGPSTIARRMGAEDLDAHDIAAY 63
Query 61 DPDKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLK 120
DP+ F AL S++PA+HR+PGSMA R+Q L + +V+ YDGDA A+W G G ELL+RL+
Sbjct 64 DPESFAALLSDKPAVHRYPGSMAGRVQQLCRYLVETYDGDAEAVWR-GVSTGKELLKRLQ 122
Query 121 GLPGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVRSHK 180
LPGFG+QKA+IFLALLGKQ GV P+GW+ AAG +G+ ++ SVADI SL +VR+HK
Sbjct 123 ELPGFGKQKAQIFLALLGKQLGVRPEGWREAAGAYGEADSFRSVADIRGPESLTKVRAHK 182
Query 181 RQ 182
++
Sbjct 183 QE 184
>gi|300782757|ref|YP_003763048.1| hypothetical protein AMED_0826 [Amycolatopsis mediterranei U32]
gi|299792271|gb|ADJ42646.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
gi|340524131|gb|AEK39336.1| hypothetical protein RAM_04220 [Amycolatopsis mediterranei S699]
Length=193
Score = 211 bits (538), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 105/177 (60%), Positives = 129/177 (73%), Gaps = 2/177 (1%)
Query 3 NLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGSFDAGDIADYDP 62
L L +PAAD LLN +PFALLVGMLLDQQ PME AFAGP+KIADRM F IA D
Sbjct 4 ELHLTGDPAADKLLNDDPFALLVGMLLDQQFPMEHAFAGPRKIADRMDGFSLAKIAATDV 63
Query 63 DKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAG--EPDGNELLRRLK 120
+ FV +C PAIHR+ GSMA+R+ ALAQ I++ YDG +W G +PDG E+L+RL+
Sbjct 64 ETFVEMCVVPPAIHRYGGSMARRVHALAQHIIENYDGRTEGIWLDGRPKPDGPEVLKRLR 123
Query 121 GLPGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVR 177
LPGFGEQKA+IFLALLGKQ G+ PKGW+ AAG +G G+ S+AD+ A +L +VR
Sbjct 124 ALPGFGEQKAKIFLALLGKQRGIQPKGWREAAGAYGDRGSRRSIADVTSAETLAEVR 180
>gi|302552538|ref|ZP_07304880.1| HhH-GPD family protein [Streptomyces viridochromogenes DSM 40736]
gi|302470156|gb|EFL33249.1| HhH-GPD family protein [Streptomyces viridochromogenes DSM 40736]
Length=197
Score = 211 bits (538), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 108/182 (60%), Positives = 135/182 (75%), Gaps = 3/182 (1%)
Query 3 NLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMGS--FDAGDIADY 60
L L Q+P ADALL +P A LVGMLLDQQVPME AF GP IA R+G+ DA +IA +
Sbjct 4 TLYLAQDPEADALLGRSPLAALVGMLLDQQVPMEWAFKGPATIAQRLGADDLDAQEIALH 63
Query 61 DPDKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLK 120
+P+ F AL S++PA+HR+PGSMAKRIQ L Q +V+ YDGDA A+W G ELL+RL
Sbjct 64 EPEAFAALLSQKPAVHRYPGSMAKRIQQLCQYLVEHYDGDAEAVWK-DVGTGKELLKRLA 122
Query 121 GLPGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVRSHK 180
LPGFG+QKA+IFLALLGKQ GV P GW+ AAG +G+P ++ SVADI SL +VR+HK
Sbjct 123 ELPGFGKQKAQIFLALLGKQLGVQPTGWREAAGSYGEPRSFRSVADITGPESLAKVRAHK 182
Query 181 RQ 182
++
Sbjct 183 QE 184
>gi|297162319|gb|ADI12031.1| hypothetical protein SBI_08913 [Streptomyces bingchenggensis
BCW-1]
Length=199
Score = 211 bits (538), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 109/182 (60%), Positives = 133/182 (74%), Gaps = 3/182 (1%)
Query 3 NLQLVQEPAADALLNANPFALLVGMLLDQQVPMETAFAGPKKIADRMG--SFDAGDIADY 60
L+L Q P AD LL +P A L GMLLDQQVPME AF+GP IA RMG DA +IA
Sbjct 4 TLRLAQRPEADELLGRSPLAALTGMLLDQQVPMEWAFSGPYTIAQRMGGDDLDAHEIAAC 63
Query 61 DPDKFVALCSERPAIHRFPGSMAKRIQALAQIIVDRYDGDAAALWTAGEPDGNELLRRLK 120
DP++FV + S +PA+HR+PGSMAKR+Q L Q +VD YDGDAAALW G ELL RL
Sbjct 64 DPERFVEVLSAKPAVHRYPGSMAKRVQQLCQYLVDYYDGDAAALWR-DVGTGKELLDRLN 122
Query 121 GLPGFGEQKARIFLALLGKQYGVTPKGWQVAAGEFGQPGTYLSVADIVDAGSLGQVRSHK 180
LPGFG+QK++IFLALLGKQYGV P+GW+ AAG +G+ G+Y SVADI SL +VR+ K
Sbjct 123 ALPGFGKQKSQIFLALLGKQYGVRPEGWREAAGAYGEEGSYRSVADITGPESLDKVRAFK 182
Query 181 RQ 182
++
Sbjct 183 QE 184
Lambda K H
0.319 0.136 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 202202242956
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40