BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1158c

Length=227
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15608298|ref|NP_215674.1|  hypothetical protein Rv1158c [Mycob...   383    1e-104
gi|340626171|ref|YP_004744623.1|  hypothetical protein MCAN_11681...   382    3e-104
gi|289749697|ref|ZP_06509075.1|  conserved alanine and proline ri...   248    6e-64 
gi|289753227|ref|ZP_06512605.1|  conserved hypothetical protein [...   242    4e-62 
gi|289573815|ref|ZP_06454042.1|  predicted protein [Mycobacterium...   209    3e-52 
gi|240171710|ref|ZP_04750369.1|  hypothetical protein MkanA1_2052...   166    3e-39 
gi|307083710|ref|ZP_07492823.1|  hypothetical protein TMLG_02838 ...   152    3e-35 
gi|15840600|ref|NP_335637.1|  hypothetical protein MT1194 [Mycoba...   144    9e-33 
gi|221230269|ref|YP_002503685.1|  hypothetical protein MLBr_01505...   144    1e-32 
gi|15827792|ref|NP_302055.1|  hypothetical protein ML1505 [Mycoba...   143    2e-32 
gi|289442590|ref|ZP_06432334.1|  conserved alanine and proline ri...   142    4e-32 
gi|296170048|ref|ZP_06851651.1|  conserved hypothetical protein [...   134    1e-29 
gi|41408723|ref|NP_961559.1|  hypothetical protein MAP2625 [Mycob...   126    2e-27 
gi|118616756|ref|YP_905088.1|  hypothetical protein MUL_1005 [Myc...   125    4e-27 
gi|183984263|ref|YP_001852554.1|  hypothetical protein MMAR_4293 ...   125    4e-27 
gi|342862048|ref|ZP_08718691.1|  hypothetical protein MCOL_24276 ...   122    5e-26 
gi|254774175|ref|ZP_05215691.1|  hypothetical protein MaviaA2_058...   113    2e-23 
gi|254818787|ref|ZP_05223788.1|  hypothetical protein MintA_02624...  72.4    5e-11 
gi|118465711|ref|YP_880542.1|  hypothetical protein MAV_1297 [Myc...  69.3    4e-10 
gi|126323518|ref|XP_001364347.1|  PREDICTED: splicing factor 3A s...  45.4    0.006 
gi|344243435|gb|EGV99538.1|  Splicing factor 3A subunit 2 [Cricet...  40.8    0.15  
gi|19924252|sp|Q62203.2|SF3A2_MOUSE  RecName: Full=Splicing facto...  36.2    3.4   
gi|148699549|gb|EDL31496.1|  splicing factor 3a, subunit 2, isofo...  36.2    3.8   
gi|158749553|ref|NP_038679.3|  splicing factor 3A subunit 2 [Mus ...  36.2    4.1   
gi|30931324|gb|AAH52697.1|  Sf3a2 protein [Mus musculus]              36.2    4.2   


>gi|15608298|ref|NP_215674.1| hypothetical protein Rv1158c [Mycobacterium tuberculosis H37Rv]
 gi|31792351|ref|NP_854844.1| hypothetical protein Mb1189c [Mycobacterium bovis AF2122/97]
 gi|121637089|ref|YP_977312.1| hypothetical protein BCG_1219c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 62 more sequence titles
 Length=227

 Score =  383 bits (983),  Expect = 1e-104, Method: Compositional matrix adjust.
 Identities = 227/227 (100%), Positives = 227/227 (100%), Gaps = 0/227 (0%)

Query  1    MPTIWTFVRAAAVLVGSSAALLTGGIAHADPAPAPAPAPNIPQQLISSAANAPQILQNLA  60
            MPTIWTFVRAAAVLVGSSAALLTGGIAHADPAPAPAPAPNIPQQLISSAANAPQILQNLA
Sbjct  1    MPTIWTFVRAAAVLVGSSAALLTGGIAHADPAPAPAPAPNIPQQLISSAANAPQILQNLA  60

Query  61   TALGATPPLSAPKVAEPAPAAPGITATFPGLTPAAPAAAAAPALTPSIPGVNAPIPGITP  120
            TALGATPPLSAPKVAEPAPAAPGITATFPGLTPAAPAAAAAPALTPSIPGVNAPIPGITP
Sbjct  61   TALGATPPLSAPKVAEPAPAAPGITATFPGLTPAAPAAAAAPALTPSIPGVNAPIPGITP  120

Query  121  AAPALPVTAPAAAPTIPGVNAPIPGITAPAPAAAAVPASVPGVPSAKVDLPQLPYLPLQV  180
            AAPALPVTAPAAAPTIPGVNAPIPGITAPAPAAAAVPASVPGVPSAKVDLPQLPYLPLQV
Sbjct  121  AAPALPVTAPAAAPTIPGVNAPIPGITAPAPAAAAVPASVPGVPSAKVDLPQLPYLPLQV  180

Query  181  PQQLSLPADLPALASGVIPAAPIAPTPPAPGAPALPPGPPSLLAALP  227
            PQQLSLPADLPALASGVIPAAPIAPTPPAPGAPALPPGPPSLLAALP
Sbjct  181  PQQLSLPADLPALASGVIPAAPIAPTPPAPGAPALPPGPPSLLAALP  227


>gi|340626171|ref|YP_004744623.1| hypothetical protein MCAN_11681 [Mycobacterium canettii CIPT 
140010059]
 gi|340004361|emb|CCC43504.1| conserved hypothetical ALA-, PRO-rich protein [Mycobacterium 
canettii CIPT 140010059]
Length=227

 Score =  382 bits (980),  Expect = 3e-104, Method: Compositional matrix adjust.
 Identities = 226/227 (99%), Positives = 227/227 (100%), Gaps = 0/227 (0%)

Query  1    MPTIWTFVRAAAVLVGSSAALLTGGIAHADPAPAPAPAPNIPQQLISSAANAPQILQNLA  60
            MPTIWTFVRAAAVLVGSSAALLTGGIAHADPAPAPAPAPNIPQQLISSAANAPQILQNLA
Sbjct  1    MPTIWTFVRAAAVLVGSSAALLTGGIAHADPAPAPAPAPNIPQQLISSAANAPQILQNLA  60

Query  61   TALGATPPLSAPKVAEPAPAAPGITATFPGLTPAAPAAAAAPALTPSIPGVNAPIPGITP  120
            TALGATPPLSAPKVAEPAPAAPGITATFPGLTPAAPAAAAAPA+TPSIPGVNAPIPGITP
Sbjct  61   TALGATPPLSAPKVAEPAPAAPGITATFPGLTPAAPAAAAAPAVTPSIPGVNAPIPGITP  120

Query  121  AAPALPVTAPAAAPTIPGVNAPIPGITAPAPAAAAVPASVPGVPSAKVDLPQLPYLPLQV  180
            AAPALPVTAPAAAPTIPGVNAPIPGITAPAPAAAAVPASVPGVPSAKVDLPQLPYLPLQV
Sbjct  121  AAPALPVTAPAAAPTIPGVNAPIPGITAPAPAAAAVPASVPGVPSAKVDLPQLPYLPLQV  180

Query  181  PQQLSLPADLPALASGVIPAAPIAPTPPAPGAPALPPGPPSLLAALP  227
            PQQLSLPADLPALASGVIPAAPIAPTPPAPGAPALPPGPPSLLAALP
Sbjct  181  PQQLSLPADLPALASGVIPAAPIAPTPPAPGAPALPPGPPSLLAALP  227


>gi|289749697|ref|ZP_06509075.1| conserved alanine and proline rich protein [Mycobacterium tuberculosis 
T92]
 gi|289690284|gb|EFD57713.1| conserved alanine and proline rich protein [Mycobacterium tuberculosis 
T92]
Length=187

 Score =  248 bits (632),  Expect = 6e-64, Method: Compositional matrix adjust.
 Identities = 187/187 (100%), Positives = 187/187 (100%), Gaps = 0/187 (0%)

Query  1    MPTIWTFVRAAAVLVGSSAALLTGGIAHADPAPAPAPAPNIPQQLISSAANAPQILQNLA  60
            MPTIWTFVRAAAVLVGSSAALLTGGIAHADPAPAPAPAPNIPQQLISSAANAPQILQNLA
Sbjct  1    MPTIWTFVRAAAVLVGSSAALLTGGIAHADPAPAPAPAPNIPQQLISSAANAPQILQNLA  60

Query  61   TALGATPPLSAPKVAEPAPAAPGITATFPGLTPAAPAAAAAPALTPSIPGVNAPIPGITP  120
            TALGATPPLSAPKVAEPAPAAPGITATFPGLTPAAPAAAAAPALTPSIPGVNAPIPGITP
Sbjct  61   TALGATPPLSAPKVAEPAPAAPGITATFPGLTPAAPAAAAAPALTPSIPGVNAPIPGITP  120

Query  121  AAPALPVTAPAAAPTIPGVNAPIPGITAPAPAAAAVPASVPGVPSAKVDLPQLPYLPLQV  180
            AAPALPVTAPAAAPTIPGVNAPIPGITAPAPAAAAVPASVPGVPSAKVDLPQLPYLPLQV
Sbjct  121  AAPALPVTAPAAAPTIPGVNAPIPGITAPAPAAAAVPASVPGVPSAKVDLPQLPYLPLQV  180

Query  181  PQQLSLP  187
            PQQLSLP
Sbjct  181  PQQLSLP  187


>gi|289753227|ref|ZP_06512605.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289693814|gb|EFD61243.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
Length=227

 Score =  242 bits (617),  Expect = 4e-62, Method: Compositional matrix adjust.
 Identities = 174/198 (88%), Positives = 175/198 (89%), Gaps = 0/198 (0%)

Query  1    MPTIWTFVRAAAVLVGSSAALLTGGIAHADPAPAPAPAPNIPQQLISSAANAPQILQNLA  60
            MPTIWTFVRAAAVLVGSSAALLTGGIAHADPAPAPAPAPNIPQQLISSAANAPQILQNLA
Sbjct  1    MPTIWTFVRAAAVLVGSSAALLTGGIAHADPAPAPAPAPNIPQQLISSAANAPQILQNLA  60

Query  61   TALGATPPLSAPKVAEPAPAAPGITATFPGLTPAAPAAAAAPALTPSIPGVNAPIPGITP  120
            TALGATPPLSAPKVAEPAPAAPGITATFPGLTPAAPAAAAAPALTPSIPGVNAPIPGITP
Sbjct  61   TALGATPPLSAPKVAEPAPAAPGITATFPGLTPAAPAAAAAPALTPSIPGVNAPIPGITP  120

Query  121  AAPALPVTAPAAAPTIPGVNAPIPGITAPAPAAAAVPASVPGVPSAKVDLPQLPYLPLQV  180
            AAPALPVTAPAAAPTIPGVNAPIPG T   P               +    QLPYLPLQV
Sbjct  121  AAPALPVTAPAAAPTIPGVNAPIPGDTRTGPGGDRGAGLRSRRAVGEGRPTQLPYLPLQV  180

Query  181  PQQLSLPADLPALASGVI  198
            PQQLSLPADLPALASGVI
Sbjct  181  PQQLSLPADLPALASGVI  198


>gi|289573815|ref|ZP_06454042.1| predicted protein [Mycobacterium tuberculosis K85]
 gi|289538246|gb|EFD42824.1| predicted protein [Mycobacterium tuberculosis K85]
Length=199

 Score =  209 bits (531),  Expect = 3e-52, Method: Compositional matrix adjust.
 Identities = 168/198 (85%), Positives = 168/198 (85%), Gaps = 28/198 (14%)

Query  1    MPTIWTFVRAAAVLVGSSAALLTGGIAHADPAPAPAPAPNIPQQLISSAANAPQILQNLA  60
            MPTIWTFVRAAAVLVGSSAALLTGGIAHADPAPAPAPAPNIPQQLISSAANAPQILQNLA
Sbjct  1    MPTIWTFVRAAAVLVGSSAALLTGGIAHADPAPAPAPAPNIPQQLISSAANAPQILQNLA  60

Query  61   TALGATPPLSAPKVAEPAPAAPGITATFPGLTPAAPAAAAAPALTPSIPGVNAPIPGITP  120
            TALGATPPLSAPKVAEPAPAAPGITATFPGLTPAAPAAAAAPALTPSIPGVNAP      
Sbjct  61   TALGATPPLSAPKVAEPAPAAPGITATFPGLTPAAPAAAAAPALTPSIPGVNAP------  114

Query  121  AAPALPVTAPAAAPTIPGVNAPIPGITAPAPAAAAVPASVPGVPSAKVDLPQLPYLPLQV  180
                                  IPGIT  APAAAAVPASVPGVPSAKVDLPQLPYLPLQV
Sbjct  115  ----------------------IPGITPAAPAAAAVPASVPGVPSAKVDLPQLPYLPLQV  152

Query  181  PQQLSLPADLPALASGVI  198
            PQQLSLPADLPALASGVI
Sbjct  153  PQQLSLPADLPALASGVI  170


>gi|240171710|ref|ZP_04750369.1| hypothetical protein MkanA1_20520 [Mycobacterium kansasii ATCC 
12478]
Length=213

 Score =  166 bits (420),  Expect = 3e-39, Method: Compositional matrix adjust.
 Identities = 106/146 (73%), Positives = 113/146 (78%), Gaps = 2/146 (1%)

Query  1    MPTIWTFVRAAAVLVGSSAALLTGGIAHADPAPAPAPAPNIPQQLISSAANAPQILQNLA  60
            MPT+WT+VRAAAVLVGSSAALLTGGIAHADPAP P P  NIPQQLI+SAANAPQILQNLA
Sbjct  1    MPTMWTYVRAAAVLVGSSAALLTGGIAHADPAPVPDPVSNIPQQLIASAANAPQILQNLA  60

Query  61   TALGATPPLSAPKVAEPAPAAPGITATFPGLTPAAPAAAAAPALTPSIPGVNAPIPGITP  120
            TALGATPP+  PK  EPA AAPGI +  PGLTP APA  A  A TP+IPGV  PIPGIT 
Sbjct  61   TALGATPPV--PKAPEPALAAPGIASMIPGLTPTAPAVPATSAGTPAIPGVTTPIPGITA  118

Query  121  AAPALPVTAPAAAPTIPGVNAPIPGI  146
               A    A AA P IPGV  PIPG+
Sbjct  119  PVAAPTAPAAAATPAIPGVTTPIPGV  144


>gi|307083710|ref|ZP_07492823.1| hypothetical protein TMLG_02838 [Mycobacterium tuberculosis SUMu012]
 gi|308366595|gb|EFP55446.1| hypothetical protein TMLG_02838 [Mycobacterium tuberculosis SUMu012]
Length=114

 Score =  152 bits (385),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 114/114 (100%), Positives = 114/114 (100%), Gaps = 0/114 (0%)

Query  1    MPTIWTFVRAAAVLVGSSAALLTGGIAHADPAPAPAPAPNIPQQLISSAANAPQILQNLA  60
            MPTIWTFVRAAAVLVGSSAALLTGGIAHADPAPAPAPAPNIPQQLISSAANAPQILQNLA
Sbjct  1    MPTIWTFVRAAAVLVGSSAALLTGGIAHADPAPAPAPAPNIPQQLISSAANAPQILQNLA  60

Query  61   TALGATPPLSAPKVAEPAPAAPGITATFPGLTPAAPAAAAAPALTPSIPGVNAP  114
            TALGATPPLSAPKVAEPAPAAPGITATFPGLTPAAPAAAAAPALTPSIPGVNAP
Sbjct  61   TALGATPPLSAPKVAEPAPAAPGITATFPGLTPAAPAAAAAPALTPSIPGVNAP  114


>gi|15840600|ref|NP_335637.1| hypothetical protein MT1194 [Mycobacterium tuberculosis CDC1551]
 gi|13880781|gb|AAK45451.1| hypothetical protein MT1194 [Mycobacterium tuberculosis CDC1551]
Length=230

 Score =  144 bits (363),  Expect = 9e-33, Method: Compositional matrix adjust.
 Identities = 104/145 (72%), Positives = 105/145 (73%), Gaps = 1/145 (0%)

Query  1    MPTIWTFVRAAAVLVGSSAALLTGGIAHADPAPAPAPAPNIPQQLISSAANAPQILQNLA  60
            MPTIWTFVRAAAVLVGSSAALLTGGIAHADPAPAPAPAPNIPQQLISSAANAPQILQNLA
Sbjct  1    MPTIWTFVRAAAVLVGSSAALLTGGIAHADPAPAPAPAPNIPQQLISSAANAPQILQNLA  60

Query  61   TALGATPPLSAPKVAEPAPAAPGITATFPGLTPAAPAAAAAPALTPSIPGVNAPIPGITP  120
            TALGATPPLSAPKVAEPAPAAPGITATFPGLTPA       P           P PG  P
Sbjct  61   TALGATPPLSAPKVAEPAPAAPGITATFPGLTPAH-RRQRGPRANSVHSRSERPDPGDNP  119

Query  121  AAPALPVTAPAAAPTIPGVNAPIPG  145
                 P   P  +        P PG
Sbjct  120  GGTGAPRHRPGGSSDHSRSERPDPG  144


>gi|221230269|ref|YP_002503685.1| hypothetical protein MLBr_01505 [Mycobacterium leprae Br4923]
 gi|219933376|emb|CAR71600.1| conserved hypothetical Proline rich protein [Mycobacterium leprae 
Br4923]
Length=180

 Score =  144 bits (362),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 108/197 (55%), Positives = 127/197 (65%), Gaps = 48/197 (24%)

Query  1    MPTIWTFVRAAAVLVGSSAALLTGGIAHADPAPAPAPAP------NIPQQLISSAANAPQ  54
            M TIWT++RA A++VGSSAALLTGGIAHAD APAPAPAP      NIPQQLISSAANAPQ
Sbjct  1    MATIWTYLRATAIVVGSSAALLTGGIAHADTAPAPAPAPAPAPALNIPQQLISSAANAPQ  60

Query  55   ILQNLATALGATPPLSAPKVAEPAPAAPGITATFPGLTPAAPAAAAAPALT-PSIPGVNA  113
            ILQNLATALGATPP++        P+APGI  +FPGLTPAA     + A T PS+PG+ A
Sbjct  61   ILQNLATALGATPPVT--------PSAPGI--SFPGLTPAAATVPTSSAATLPSLPGIMA  110

Query  114  PIPGITPAAPALPVTAPAAAPTIPGVNAPIPGITAPAPAAAAVPASVPGVPSAKVDLPQL  173
            P              A +  PT PG                 +PAS PG P A+VD+P +
Sbjct  111  P--------------AISNTPTTPG-----------------LPASTPGFPQARVDMPAM  139

Query  174  PYLPLQVPQQLSLPADL  190
            P+LP+ VP Q+SLP DL
Sbjct  140  PFLPVSVPPQISLPGDL  156


>gi|15827792|ref|NP_302055.1| hypothetical protein ML1505 [Mycobacterium leprae TN]
 gi|13093344|emb|CAC30456.1| conserved hypothetical Proline rich protein [Mycobacterium leprae]
Length=182

 Score =  143 bits (360),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 108/199 (55%), Positives = 127/199 (64%), Gaps = 50/199 (25%)

Query  1    MPTIWTFVRAAAVLVGSSAALLTGGIAHADPAPAPAPAP--------NIPQQLISSAANA  52
            M TIWT++RA A++VGSSAALLTGGIAHAD APAPAPAP        NIPQQLISSAANA
Sbjct  1    MATIWTYLRATAIVVGSSAALLTGGIAHADTAPAPAPAPAPAPAPALNIPQQLISSAANA  60

Query  53   PQILQNLATALGATPPLSAPKVAEPAPAAPGITATFPGLTPAAPAAAAAPALT-PSIPGV  111
            PQILQNLATALGATPP++        P+APGI  +FPGLTPAA     + A T PS+PG+
Sbjct  61   PQILQNLATALGATPPVT--------PSAPGI--SFPGLTPAAATVPTSSAATLPSLPGI  110

Query  112  NAPIPGITPAAPALPVTAPAAAPTIPGVNAPIPGITAPAPAAAAVPASVPGVPSAKVDLP  171
             AP              A +  PT PG                 +PAS PG P A+VD+P
Sbjct  111  MAP--------------AISNTPTTPG-----------------LPASTPGFPQARVDMP  139

Query  172  QLPYLPLQVPQQLSLPADL  190
             +P+LP+ VP Q+SLP DL
Sbjct  140  AMPFLPVSVPPQISLPGDL  158


>gi|289442590|ref|ZP_06432334.1| conserved alanine and proline rich protein [Mycobacterium tuberculosis 
T46]
 gi|289415509|gb|EFD12749.1| conserved alanine and proline rich protein [Mycobacterium tuberculosis 
T46]
Length=234

 Score =  142 bits (358),  Expect = 4e-32, Method: Compositional matrix adjust.
 Identities = 110/205 (54%), Positives = 115/205 (57%), Gaps = 7/205 (3%)

Query  1    MPTIWTFVRAAAVLVGSSAALLTGGIAHADPAPAPAPAPNIPQQLIS-SAANAPQILQNL  59
            MPTIWTFVRAAAVLVG       G       APAPAPAPNIPQQ          + LQNL
Sbjct  1    MPTIWTFVRAAAVLVGFFRRTTYGRYRSRRSAPAPAPAPNIPQQADQLGRQRTRKFLQNL  60

Query  60   ATALGA-TPPLSAPKVAEPAPAAPGITATFPGLTPAAPAAAAAP-ALTPSIPGVNAPIPG  117
                G   PPLSAP+     P  P             PAA+  P A +   PGVNAPIPG
Sbjct  61   RQRSGRPLPPLSAPQSCGTRPRRPRDNRHLSKTGAGGPAASRGPRANSVHFPGVNAPIPG  120

Query  118  ITPAAP-ALPVTAPAAAPT-IPGVNAPIP-GITAPAPAAA-AVPASVPGVPSAKVDLPQL  173
              P    A P TAP       PG NAP P G+T   P          PGVPSAKVDLPQL
Sbjct  121  NNPGGTGASPSTAPGGQLRPFPGGNAPDPGGLTRTGPGGGPRCRPPFPGVPSAKVDLPQL  180

Query  174  PYLPLQVPQQLSLPADLPALASGVI  198
            PYLPLQVPQQLSLPADLPALASGVI
Sbjct  181  PYLPLQVPQQLSLPADLPALASGVI  205


>gi|296170048|ref|ZP_06851651.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295895258|gb|EFG74968.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=225

 Score =  134 bits (336),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 116/213 (55%), Positives = 134/213 (63%), Gaps = 46/213 (21%)

Query  1    MPTIWTFVRAAAVLVGSSAALLTGGIAHADPAPAPAPAPNIPQQLISSAANAPQILQNLA  60
            MPTIWT++RAAAV+VGSSAALLTGGIAHADP PAP P PNIPQQLISSAANAPQILQNLA
Sbjct  1    MPTIWTYMRAAAVVVGSSAALLTGGIAHADPVPAP-PIPNIPQQLISSAANAPQILQNLA  59

Query  61   TALGATPPLSAPKVAEPAPAAPGITATFPGLTPAAPAAAAAPALTPSIPGV-NAPIPGIT  119
            TALGAT           APAAPGI  TFPG+  AA  + A  A  PSIPG+  AP P   
Sbjct  60   TALGAT--------PPAAPAAPGI--TFPGVPSAATTSPATSAGIPSIPGLAQAPTP---  106

Query  120  PAAPALPVTAPAAAPTIPGVNAPIPGITAPAPAAAAVP--ASVPG---------------  162
                    +AP+ A    G+   IPG+T PAPAA A P  +S+PG               
Sbjct  107  --------SAPSTATATQGLQGLIPGLTPPAPAAPAAPATSSIPGLPAIPGLSTPTAPAT  158

Query  163  -----VPSAKVDLPQ-LPYLPLQVPQQLSLPAD  189
                 +P AKVD+P  LP LP+ +P Q++LP D
Sbjct  159  PPAPQIPQAKVDMPAFLPNLPVNMPAQMTLPQD  191


>gi|41408723|ref|NP_961559.1| hypothetical protein MAP2625 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41397081|gb|AAS04942.1| hypothetical protein MAP_2625 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|336458640|gb|EGO37602.1| hypothetical protein MAPs_10730 [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=232

 Score =  126 bits (317),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 107/210 (51%), Positives = 128/210 (61%), Gaps = 25/210 (11%)

Query  1    MPTIWTFVRAAAVLVGSSAALLTGGIAHADPAPAPAPAPNIPQQLISSAANAPQILQNLA  60
            MPTIWT++RAAAV+VGSSAALLTGGIAHADP P P P PNIPQQLISSAANAPQILQNLA
Sbjct  1    MPTIWTYLRAAAVVVGSSAALLTGGIAHADPVPTP-PVPNIPQQLISSAANAPQILQNLA  59

Query  61   TALGATPPLSAPKVAEPAPAAPGITATFPGL-TPAAPAAAAAPALTPSIPGV--------  111
            TALGAT            PA PGI  +FPG+    +P  A++PA  PSIPG+        
Sbjct  60   TALGAT--------PPAPPATPGI--SFPGVPAAGSPVTASSPAAVPSIPGLPQAAAPSA  109

Query  112  ----NAPIPGITPAAPALPVTAPAAAPTIPGVNAPIPGITAPAPAAAAVPASVPGVPSAK  167
                   IPG+         +A A A         +P I   +  AA      P +P A+
Sbjct  110  PSTATGGIPGMIQGLTGAQPSAAAPAAPASSSIPGLPAIPGLSAPAAPATPPAPQLPQAQ  169

Query  168  VDLPQLP-YLPLQVPQQLSLPADLPALASG  196
            V++P +P  LP+ VP Q++LP DLPALASG
Sbjct  170  VNMPAMPAGLPVSVPAQVTLPKDLPALASG  199


>gi|118616756|ref|YP_905088.1| hypothetical protein MUL_1005 [Mycobacterium ulcerans Agy99]
 gi|118568866|gb|ABL03617.1| conserved hypothetical secreted protein [Mycobacterium ulcerans 
Agy99]
Length=208

 Score =  125 bits (315),  Expect = 4e-27, Method: Compositional matrix adjust.
 Identities = 112/144 (78%), Positives = 119/144 (83%), Gaps = 3/144 (2%)

Query  1    MPTIWTFVRAAAVLVGSSAALLTGGIAHADPAPAPAPAPNIPQQLISSAANAPQILQNLA  60
            MPTIWT+VRAAAVLVGSSAALLTGGIAHADPAPAPAPAPNIPQQLISSAANAPQILQNLA
Sbjct  1    MPTIWTYVRAAAVLVGSSAALLTGGIAHADPAPAPAPAPNIPQQLISSAANAPQILQNLA  60

Query  61   TALGATPPLSAPKVAEPAPAAPGITATFPGLTPAAPAAAAAPALTPSIPGVNAPIPGIT-  119
            TALG TP L AP+  +P PAAPG+ +  PGL PAAPA A A    P+IPGVN PIPGIT 
Sbjct  61   TALGTTPLLGAPQAPQPVPAAPGLGSVLPGLAPAAPATAPAVT--PAIPGVNTPIPGITA  118

Query  120  PAAPALPVTAPAAAPTIPGVNAPI  143
            PAAP  P  A A  P+IPGVNAPI
Sbjct  119  PAAPVAPSPATAVTPSIPGVNAPI  142


>gi|183984263|ref|YP_001852554.1| hypothetical protein MMAR_4293 [Mycobacterium marinum M]
 gi|183177589|gb|ACC42699.1| conserved hypothetical secreted protein [Mycobacterium marinum 
M]
Length=208

 Score =  125 bits (314),  Expect = 4e-27, Method: Compositional matrix adjust.
 Identities = 112/144 (78%), Positives = 119/144 (83%), Gaps = 3/144 (2%)

Query  1    MPTIWTFVRAAAVLVGSSAALLTGGIAHADPAPAPAPAPNIPQQLISSAANAPQILQNLA  60
            MPTIWT+VRAAAVLVGSSAALLTGGIAHADPAPAPAPAPNIPQQLISSAANAPQILQNLA
Sbjct  1    MPTIWTYVRAAAVLVGSSAALLTGGIAHADPAPAPAPAPNIPQQLISSAANAPQILQNLA  60

Query  61   TALGATPPLSAPKVAEPAPAAPGITATFPGLTPAAPAAAAAPALTPSIPGVNAPIPGIT-  119
            TALG TP L AP+  +P PAAPG+ +  PGL PAAPA A A    P+IPGVN PIPGIT 
Sbjct  61   TALGTTPLLGAPQAPQPVPAAPGLGSVLPGLAPAAPATAPAVT--PAIPGVNTPIPGITA  118

Query  120  PAAPALPVTAPAAAPTIPGVNAPI  143
            PAAP  P  A A  P+IPGVNAPI
Sbjct  119  PAAPVAPSPATAVTPSIPGVNAPI  142


>gi|342862048|ref|ZP_08718691.1| hypothetical protein MCOL_24276 [Mycobacterium colombiense CECT 
3035]
 gi|342130352|gb|EGT83667.1| hypothetical protein MCOL_24276 [Mycobacterium colombiense CECT 
3035]
Length=252

 Score =  122 bits (305),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 118/232 (51%), Positives = 142/232 (62%), Gaps = 52/232 (22%)

Query  1    MPTIWTFVRAAAVLVGSSAALLTGGIAHADPAPAPAPAPNIPQQLISSAANAPQILQNLA  60
            MPTIWT++RAAAV+VGSSAALLTGGIAHADP PAPA  PNIPQQLISSAANAPQILQNLA
Sbjct  1    MPTIWTYMRAAAVVVGSSAALLTGGIAHADPVPAPA-VPNIPQQLISSAANAPQILQNLA  59

Query  61   TALGATPP-------LSAPKVAEPA------------PAAPGITA---------------  86
            TALGATPP       +S P V                P+ PG+TA               
Sbjct  60   TALGATPPAAPASPGISFPGVPAATSPATAAAPAAGLPSIPGLTAPTSPAGQVPSTAANP  119

Query  87   TFPGL----TPAAPAAAAAPALTPSIPGVNAPIPGITPAAPALPVTAPAAAPTIPGVNAP  142
              PGL    TPAAP+ A     T  IPG+   I G+T A PA    A  +AP+IPG+ A 
Sbjct  120  FLPGLAQSATPAAPSTA-----TGGIPGM---IQGLTGAQPAAAGPAAPSAPSIPGLPA-  170

Query  143  IPGITAPAPAAAAVPASVPGVPSAKVDLPQLP-YLPLQVPQQLSLPADLPAL  193
            IPG+++PA  A         +P A+V++P +P  LP+ VP +++LP DLPAL
Sbjct  171  IPGLSSPAAPATPPAPQ---IPQAQVNMPAMPAGLPVSVPPKVTLPQDLPAL  219


>gi|254774175|ref|ZP_05215691.1| hypothetical protein MaviaA2_05810 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=112

 Score =  113 bits (283),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 79/113 (70%), Positives = 87/113 (77%), Gaps = 14/113 (12%)

Query  1    MPTIWTFVRAAAVLVGSSAALLTGGIAHADPAPAPAPAPNIPQQLISSAANAPQILQNLA  60
            MPTIWT++RAAAV+VGSSAALLTGGIAHADP P P P PNIPQQLISSAANAPQILQNLA
Sbjct  1    MPTIWTYLRAAAVVVGSSAALLTGGIAHADPVPTP-PVPNIPQQLISSAANAPQILQNLA  59

Query  61   TALGATPPLSAPKVAEPAPAAPGITATFPGLTPAA--PAAAAAPALTPSIPGV  111
            TALGAT            PA PGI  +FPG+ PAA  P  A++PA  PSIPG+
Sbjct  60   TALGAT--------PPAPPATPGI--SFPGV-PAAGSPVTASSPAAVPSIPGL  101


>gi|254818787|ref|ZP_05223788.1| hypothetical protein MintA_02624 [Mycobacterium intracellulare 
ATCC 13950]
Length=95

 Score = 72.4 bits (176),  Expect = 5e-11, Method: Compositional matrix adjust.
 Identities = 60/90 (67%), Positives = 65/90 (73%), Gaps = 11/90 (12%)

Query  22   LTGGIAHADPAPAPAPAPNIPQQLISSAANAPQILQNLATALGATPPLSAPKVAEPAPAA  81
            +TGGIAHADP PAPA  PNIPQQLISSAANAPQILQNLATALGAT           APA 
Sbjct  1    MTGGIAHADPVPAPA-VPNIPQQLISSAANAPQILQNLATALGAT--------PPAAPAT  51

Query  82   PGITATFPGLTPAAPAAAAAPALTPSIPGV  111
            PGI  +FPG+  AA  A+A  A  PSIPG+
Sbjct  52   PGI--SFPGVPAAASPASATTAGIPSIPGL  79


>gi|118465711|ref|YP_880542.1| hypothetical protein MAV_1297 [Mycobacterium avium 104]
 gi|118166998|gb|ABK67895.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=196

 Score = 69.3 bits (168),  Expect = 4e-10, Method: Compositional matrix adjust.
 Identities = 76/172 (45%), Positives = 95/172 (56%), Gaps = 24/172 (13%)

Query  39   PNIPQQLISSAANAPQILQNLATALGATPPLSAPKVAEPAPAAPGITATFPGL-TPAAPA  97
            PNIPQQLISSAANAPQILQNLATALGAT            PA PGI  +FPG+    +P 
Sbjct  2    PNIPQQLISSAANAPQILQNLATALGAT--------PPAPPATPGI--SFPGVPAAGSPV  51

Query  98   AAAAPALTPSIPGV------------NAPIPGITPAAPALPVTAPAAAPTIPGVNAPIPG  145
            +A++PA  PSIPG+               IPG+         +A A A         +P 
Sbjct  52   SASSPAAVPSIPGLPQAAAPSAPSTATGGIPGMIQGLTGAQPSAAAPAAPASSSIPGLPA  111

Query  146  ITAPAPAAAAVPASVPGVPSAKVDLPQLP-YLPLQVPQQLSLPADLPALASG  196
            I   +  AA      P +P A+V++P +P  LP+ VP Q++LP DLPALASG
Sbjct  112  IPGLSAPAAPATPPAPQLPQAQVNMPAMPAGLPVSVPAQVTLPKDLPALASG  163


>gi|126323518|ref|XP_001364347.1| PREDICTED: splicing factor 3A subunit 2-like [Monodelphis domestica]
Length=473

 Score = 45.4 bits (106),  Expect = 0.006, Method: Compositional matrix adjust.
 Identities = 38/87 (44%), Positives = 47/87 (55%), Gaps = 1/87 (1%)

Query  78   APAAPGITATFPGLTPAAPAAAA-APALTPSIPGVNAPIPGITPAAPALPVTAPAAAPTI  136
             P APG+    PG+ P AP     AP + PS PGV+ P PG+ P AP +  +AP   P  
Sbjct  295  HPPAPGVHPPAPGVHPPAPGVHPPAPGVHPSAPGVHPPAPGVHPPAPGVHPSAPGVHPPA  354

Query  137  PGVNAPIPGITAPAPAAAAVPASVPGV  163
            PGV+ P PG+   AP A  V    PGV
Sbjct  355  PGVHPPAPGVHPQAPGAPGVHPQAPGV  381


 Score = 45.1 bits (105),  Expect = 0.008, Method: Compositional matrix adjust.
 Identities = 36/92 (40%), Positives = 44/92 (48%), Gaps = 10/92 (10%)

Query  64   GATPPLSAPKVAEPAPAAPGITATFPGLTPAAPAAA--------AAPALTPSIPGVNAPI  115
            G  PP  AP V   AP APG+    PG+ P AP            AP + P  PGV+   
Sbjct  356  GVHPP--APGVHPQAPGAPGVHPQAPGVHPQAPGVHPQAPGVHPQAPGVHPQAPGVHPQA  413

Query  116  PGITPAAPALPVTAPAAAPTIPGVNAPIPGIT  147
            PG+ P AP +   AP   P  PGV+ P PG+ 
Sbjct  414  PGVHPQAPGVHPQAPGVHPQAPGVHPPNPGVH  445


>gi|344243435|gb|EGV99538.1| Splicing factor 3A subunit 2 [Cricetulus griseus]
Length=520

 Score = 40.8 bits (94),  Expect = 0.15, Method: Compositional matrix adjust.
 Identities = 41/94 (44%), Positives = 49/94 (53%), Gaps = 7/94 (7%)

Query  64   GATPPLSAPKVAEPAPA----APGITATFPGLTPAAPAAAA-APALTPSIPGVNAPIPGI  118
            G  PP  AP V  PAP     APG+    PG+ P AP     AP + P  PGV+ P PG+
Sbjct  321  GVHPP--APGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPAPGV  378

Query  119  TPAAPALPVTAPAAAPTIPGVNAPIPGITAPAPA  152
             P AP +   AP   P  PGV+ P PG+  PAP 
Sbjct  379  HPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPAPG  412


 Score = 37.7 bits (86),  Expect = 1.4, Method: Compositional matrix adjust.
 Identities = 38/89 (43%), Positives = 46/89 (52%), Gaps = 7/89 (7%)

Query  64   GATPPLSAPKVAEPAPA----APGITATFPGLTPAAPAAAA-APALTPSIPGVNAPIPGI  118
            G  PP  AP V  PAP     APG+    PG+ P AP     AP + P  PGV+ P PG+
Sbjct  328  GVHPP--APGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPAPGV  385

Query  119  TPAAPALPVTAPAAAPTIPGVNAPIPGIT  147
             P AP +   AP   P  PGV+ P PG+ 
Sbjct  386  HPPAPGVHPPAPGVHPPAPGVHPPAPGVH  414


>gi|19924252|sp|Q62203.2|SF3A2_MOUSE RecName: Full=Splicing factor 3A subunit 2; AltName: Full=SF3a66; 
AltName: Full=Spliceosome-associated protein 62; Short=SAP 
62
 gi|10443237|emb|CAC10449.1| splicing factor 3a, subunit 2 [Mus musculus]
Length=475

 Score = 36.2 bits (82),  Expect = 3.4, Method: Compositional matrix adjust.
 Identities = 24/52 (47%), Positives = 30/52 (58%), Gaps = 0/52 (0%)

Query  101  APALTPSIPGVNAPIPGITPAAPALPVTAPAAAPTIPGVNAPIPGITAPAPA  152
            AP + P  PGV+ P PG+ P AP +   AP   P  PGV+ P PG+  PAP 
Sbjct  316  APGVHPPTPGVHPPAPGVHPPAPGVHPPAPGVHPPTPGVHPPAPGVHPPAPG  367


>gi|148699549|gb|EDL31496.1| splicing factor 3a, subunit 2, isoform CRA_a [Mus musculus]
Length=475

 Score = 36.2 bits (82),  Expect = 3.8, Method: Compositional matrix adjust.
 Identities = 24/52 (47%), Positives = 30/52 (58%), Gaps = 0/52 (0%)

Query  101  APALTPSIPGVNAPIPGITPAAPALPVTAPAAAPTIPGVNAPIPGITAPAPA  152
            AP + P  PGV+ P PG+ P AP +   AP   P  PGV+ P PG+  PAP 
Sbjct  316  APGVHPPTPGVHPPAPGVHPPAPGVHPPAPGVHPPTPGVHPPAPGVHPPAPG  367


>gi|158749553|ref|NP_038679.3| splicing factor 3A subunit 2 [Mus musculus]
 gi|148699550|gb|EDL31497.1| splicing factor 3a, subunit 2, isoform CRA_b [Mus musculus]
Length=485

 Score = 36.2 bits (82),  Expect = 4.1, Method: Compositional matrix adjust.
 Identities = 24/52 (47%), Positives = 30/52 (58%), Gaps = 0/52 (0%)

Query  101  APALTPSIPGVNAPIPGITPAAPALPVTAPAAAPTIPGVNAPIPGITAPAPA  152
            AP + P  PGV+ P PG+ P AP +   AP   P  PGV+ P PG+  PAP 
Sbjct  326  APGVHPPTPGVHPPAPGVHPPAPGVHPPAPGVHPPTPGVHPPAPGVHPPAPG  377


>gi|30931324|gb|AAH52697.1| Sf3a2 protein [Mus musculus]
Length=485

 Score = 36.2 bits (82),  Expect = 4.2, Method: Compositional matrix adjust.
 Identities = 24/52 (47%), Positives = 30/52 (58%), Gaps = 0/52 (0%)

Query  101  APALTPSIPGVNAPIPGITPAAPALPVTAPAAAPTIPGVNAPIPGITAPAPA  152
            AP + P  PGV+ P PG+ P AP +   AP   P  PGV+ P PG+  PAP 
Sbjct  326  APGVHPPTPGVHPPAPGVHPPAPGVHPPAPGVHPPTPGVHPPAPGVHPPAPG  377



Lambda     K      H
   0.312    0.131    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 291076174136


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40