BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1172c

Length=308
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15840615|ref|NP_335652.1|  PE family protein [Mycobacterium tu...   596    1e-168
gi|289446762|ref|ZP_06436506.1|  PE family protein [Mycobacterium...   595    3e-168
gi|31792366|ref|NP_854859.1|  PE family protein [Mycobacterium bo...   595    4e-168
gi|289744917|ref|ZP_06504295.1|  PE family protein [Mycobacterium...   537    9e-151
gi|289744916|ref|ZP_06504294.1|  PE family protein [Mycobacterium...   420    1e-115
gi|183984253|ref|YP_001852544.1|  PE family protein [Mycobacteriu...   288    9e-76 
gi|118616766|ref|YP_905098.1|  PE family protein [Mycobacterium u...   263    2e-68 
gi|240171692|ref|ZP_04750351.1|  PE family protein [Mycobacterium...   238    1e-60 
gi|183984531|ref|YP_001852822.1|  PE-PGRS family protein [Mycobac...   115    1e-23 
gi|307083393|ref|ZP_07492506.1|  hypothetical protein TMLG_01569 ...   112    8e-23 
gi|339297525|gb|AEJ49635.1|  PE-PGRS family protein [Mycobacteriu...   112    9e-23 
gi|240172746|ref|ZP_04751405.1|  PE-PGRS family protein [Mycobact...   112    1e-22 
gi|31794772|ref|NP_857265.1|  PE-PGRS family protein [Mycobacteri...   107    3e-21 
gi|148663460|ref|YP_001284983.1|  PE-PGRS family protein [Mycobac...   107    3e-21 
gi|297636271|ref|ZP_06954051.1|  PE-PGRS family protein [Mycobact...   106    4e-21 
gi|339633594|ref|YP_004725236.1|  PE-PGRS family protein [Mycobac...   106    5e-21 
gi|313660595|ref|ZP_07817475.1|  PE-PGRS family protein [Mycobact...   106    5e-21 
gi|294993715|ref|ZP_06799406.1|  PE-PGRS family protein [Mycobact...   106    5e-21 
gi|15843208|ref|NP_338245.1|  PE_PGRS family protein [Mycobacteri...   106    5e-21 
gi|57117130|ref|YP_177994.1|  PE-PGRS family protein [Mycobacteri...   106    5e-21 
gi|306777951|ref|ZP_07416288.1|  hypothetical protein TMAG_00085 ...   106    5e-21 
gi|306795977|ref|ZP_07434279.1|  putative PE family protein [Myco...   106    5e-21 
gi|306801223|ref|ZP_07437891.1|  putative PE family protein [Myco...   106    5e-21 
gi|306791192|ref|ZP_07429494.1|  putative PE family protein [Myco...   106    5e-21 
gi|306790869|ref|ZP_07429191.1|  putative PE family protein [Myco...   106    5e-21 
gi|306786503|ref|ZP_07424825.1|  hypothetical protein TMCG_01093 ...   106    5e-21 
gi|306974069|ref|ZP_07486730.1|  putative PE family protein [Myco...   106    5e-21 
gi|254552706|ref|ZP_05143153.1|  PE-PGRS family protein [Mycobact...   106    5e-21 
gi|297733265|ref|ZP_06962383.1|  PE-PGRS family protein [Mycobact...   106    5e-21 
gi|254234165|ref|ZP_04927489.1|  PE-PGRS family protein [Mycobact...   106    6e-21 
gi|289572250|ref|ZP_06452477.1|  PE-PGRS family protein [Mycobact...   105    9e-21 
gi|183980779|ref|YP_001849070.1|  PE-PGRS family protein [Mycobac...   103    3e-20 
gi|340627405|ref|YP_004745857.1|  pe_pgrs 33 [Mycobacterium canet...   103    4e-20 
gi|289554051|ref|ZP_06443261.1|  predicted protein [Mycobacterium...  99.4    6e-19 
gi|306780190|ref|ZP_07418527.1|  hypothetical protein TMBG_00710 ...  99.4    6e-19 
gi|306798021|ref|ZP_07436323.1|  putative PE family protein [Myco...  99.4    7e-19 
gi|340627170|ref|YP_004745622.1|  PE-PGRS family protein [Mycobac...  99.4    7e-19 
gi|297634751|ref|ZP_06952531.1|  PE-PGRS family protein [Mycobact...  99.0    7e-19 
gi|339632193|ref|YP_004723835.1|  PE-PGRS family protein [Mycobac...  99.0    7e-19 
gi|253798773|ref|YP_003031774.1|  PE-PGRS family protein [Mycobac...  99.0    7e-19 
gi|15841654|ref|NP_336691.1|  PE_PGRS family protein [Mycobacteri...  99.0    7e-19 
gi|306789304|ref|ZP_07427626.1|  putative PE family protein [Myco...  99.0    8e-19 
gi|31793342|ref|NP_855835.1|  hypothetical protein Mb2186c [Mycob...  99.0    8e-19 
gi|306803901|ref|ZP_07440569.1|  putative PE family protein [Myco...  99.0    8e-19 
gi|339298700|gb|AEJ50810.1|  PE-PGRS family protein [Mycobacteriu...  99.0    8e-19 
gi|306776413|ref|ZP_07414750.1|  hypothetical protein TMAG_00351 ...  99.0    9e-19 
gi|306784937|ref|ZP_07423259.1|  hypothetical protein TMCG_00258 ...  98.6    1e-18 
gi|297731742|ref|ZP_06960860.1|  PE-PGRS family protein [Mycobact...  98.6    1e-18 
gi|254551200|ref|ZP_05141647.1|  PE-PGRS family protein [Mycobact...  98.6    1e-18 
gi|307084818|ref|ZP_07493931.1|  putative PE family protein [Myco...  98.6    1e-18 


>gi|15840615|ref|NP_335652.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|57116839|ref|YP_177793.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 gi|148660960|ref|YP_001282483.1| PE family protein [Mycobacterium tuberculosis H37Ra]
 64 more sequence titles
 
gi|148822388|ref|YP_001287142.1| PE family protein [Mycobacterium tuberculosis F11]
 gi|167970143|ref|ZP_02552420.1| PE family protein [Mycobacterium tuberculosis H37Ra]
 gi|253799784|ref|YP_003032785.1| PE family protein [Mycobacterium tuberculosis KZN 1435]
 gi|254231440|ref|ZP_04924767.1| PE family protein [Mycobacterium tuberculosis C]
 gi|254364075|ref|ZP_04980121.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
 gi|254550178|ref|ZP_05140625.1| PE family protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|289442606|ref|ZP_06432350.1| PE family protein [Mycobacterium tuberculosis T46]
 gi|289555039|ref|ZP_06444249.1| PE family protein [Mycobacterium tuberculosis KZN 605]
 gi|289569176|ref|ZP_06449403.1| PE family protein [Mycobacterium tuberculosis T17]
 gi|289749715|ref|ZP_06509093.1| PE family protein [Mycobacterium tuberculosis T92]
 gi|289753242|ref|ZP_06512620.1| PE family protein [Mycobacterium tuberculosis EAS054]
 gi|289757268|ref|ZP_06516646.1| PE family protein [Mycobacterium tuberculosis T85]
 gi|289761318|ref|ZP_06520696.1| PE family protein [Mycobacterium tuberculosis GM 1503]
 gi|294993360|ref|ZP_06799051.1| PE family protein [Mycobacterium tuberculosis 210]
 gi|297633720|ref|ZP_06951500.1| PE family protein [Mycobacterium tuberculosis KZN 4207]
 gi|297730706|ref|ZP_06959824.1| PE family protein [Mycobacterium tuberculosis KZN R506]
 gi|298524670|ref|ZP_07012079.1| pe family protein [Mycobacterium tuberculosis 94_M4241A]
 gi|306775343|ref|ZP_07413680.1| PE family protein [Mycobacterium tuberculosis SUMu001]
 gi|306781750|ref|ZP_07420087.1| PE family protein [Mycobacterium tuberculosis SUMu002]
 gi|306783891|ref|ZP_07422213.1| PE family protein [Mycobacterium tuberculosis SUMu003]
 gi|306788257|ref|ZP_07426579.1| PE family protein [Mycobacterium tuberculosis SUMu004]
 gi|306792582|ref|ZP_07430884.1| PE family protein [Mycobacterium tuberculosis SUMu005]
 gi|306796988|ref|ZP_07435290.1| PE family protein [Mycobacterium tuberculosis SUMu006]
 gi|306802866|ref|ZP_07439534.1| PE family protein [Mycobacterium tuberculosis SUMu008]
 gi|306807048|ref|ZP_07443716.1| PE family protein [Mycobacterium tuberculosis SUMu007]
 gi|306967253|ref|ZP_07479914.1| PE family protein [Mycobacterium tuberculosis SUMu009]
 gi|306971437|ref|ZP_07484098.1| PE family protein [Mycobacterium tuberculosis SUMu010]
 gi|307079164|ref|ZP_07488334.1| PE family protein [Mycobacterium tuberculosis SUMu011]
 gi|313658037|ref|ZP_07814917.1| PE family protein [Mycobacterium tuberculosis KZN V2475]
 gi|340626186|ref|YP_004744638.1| PE family protein [Mycobacterium canettii CIPT 140010059]
 gi|7478578|pir||D70875 probable PE protein - Mycobacterium tuberculosis (strain H37RV)
 gi|13880797|gb|AAK45466.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|41353661|emb|CAE55369.1| PE FAMILY PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|124600499|gb|EAY59509.1| PE family protein [Mycobacterium tuberculosis C]
 gi|134149589|gb|EBA41634.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
 gi|148505112|gb|ABQ72921.1| PE family protein [Mycobacterium tuberculosis H37Ra]
 gi|148720915|gb|ABR05540.1| PE family protein [Mycobacterium tuberculosis F11]
 gi|253321287|gb|ACT25890.1| PE family protein [Mycobacterium tuberculosis KZN 1435]
 gi|289415525|gb|EFD12765.1| PE family protein [Mycobacterium tuberculosis T46]
 gi|289439671|gb|EFD22164.1| PE family protein [Mycobacterium tuberculosis KZN 605]
 gi|289542930|gb|EFD46578.1| PE family protein [Mycobacterium tuberculosis T17]
 gi|289690302|gb|EFD57731.1| PE family protein [Mycobacterium tuberculosis T92]
 gi|289693829|gb|EFD61258.1| PE family protein [Mycobacterium tuberculosis EAS054]
 gi|289708824|gb|EFD72840.1| PE family protein [Mycobacterium tuberculosis GM 1503]
 gi|289712832|gb|EFD76844.1| PE family protein [Mycobacterium tuberculosis T85]
 gi|298494464|gb|EFI29758.1| pe family protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308216144|gb|EFO75543.1| PE family protein [Mycobacterium tuberculosis SUMu001]
 gi|308325505|gb|EFP14356.1| PE family protein [Mycobacterium tuberculosis SUMu002]
 gi|308331329|gb|EFP20180.1| PE family protein [Mycobacterium tuberculosis SUMu003]
 gi|308335146|gb|EFP23997.1| PE family protein [Mycobacterium tuberculosis SUMu004]
 gi|308338953|gb|EFP27804.1| PE family protein [Mycobacterium tuberculosis SUMu005]
 gi|308342620|gb|EFP31471.1| PE family protein [Mycobacterium tuberculosis SUMu006]
 gi|308346509|gb|EFP35360.1| PE family protein [Mycobacterium tuberculosis SUMu007]
 gi|308350429|gb|EFP39280.1| PE family protein [Mycobacterium tuberculosis SUMu008]
 gi|308355076|gb|EFP43927.1| PE family protein [Mycobacterium tuberculosis SUMu009]
 gi|308359031|gb|EFP47882.1| PE family protein [Mycobacterium tuberculosis SUMu010]
 gi|308362958|gb|EFP51809.1| PE family protein [Mycobacterium tuberculosis SUMu011]
 gi|323720335|gb|EGB29431.1| PE family protein [Mycobacterium tuberculosis CDC1551A]
 gi|326902796|gb|EGE49729.1| PE family protein [Mycobacterium tuberculosis W-148]
 gi|328459529|gb|AEB04952.1| PE family protein [Mycobacterium tuberculosis KZN 4207]
 gi|339294163|gb|AEJ46274.1| PE family protein [Mycobacterium tuberculosis CCDC5079]
 gi|339297804|gb|AEJ49914.1| PE family protein [Mycobacterium tuberculosis CCDC5180]
 gi|340004376|emb|CCC43519.1| PE family protein [Mycobacterium canettii CIPT 140010059]
 gi|344219003|gb|AEM99633.1| PE family protein [Mycobacterium tuberculosis CTRI-2]
Length=308

 Score =  596 bits (1537),  Expect = 1e-168, Method: Compositional matrix adjust.
 Identities = 308/308 (100%), Positives = 308/308 (100%), Gaps = 0/308 (0%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ
Sbjct  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAEASAAQTMVNAVNAPARALLGHPLISADA  120
            GYQQLSRQMMTAFHDQFVQALRASADAYATAEASAAQTMVNAVNAPARALLGHPLISADA
Sbjct  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAEASAAQTMVNAVNAPARALLGHPLISADA  120

Query  121  STGGGSNALSRVQSMFLGTGGSSALGGSAAANAAASGALQLQPTGGASGLSAVGALLPRA  180
            STGGGSNALSRVQSMFLGTGGSSALGGSAAANAAASGALQLQPTGGASGLSAVGALLPRA
Sbjct  121  STGGGSNALSRVQSMFLGTGGSSALGGSAAANAAASGALQLQPTGGASGLSAVGALLPRA  180

Query  181  GAAAAAALPALAAESIGNAIKNLYNAVEPWVQYGFNLTAWAVGWLPYIGILAPQINFFYY  240
            GAAAAAALPALAAESIGNAIKNLYNAVEPWVQYGFNLTAWAVGWLPYIGILAPQINFFYY
Sbjct  181  GAAAAAALPALAAESIGNAIKNLYNAVEPWVQYGFNLTAWAVGWLPYIGILAPQINFFYY  240

Query  241  LGEPIVQAVLFNAIDFVDGTVTFSQALTNIETATAASINQFINTEINWIRGFLPPLPPIS  300
            LGEPIVQAVLFNAIDFVDGTVTFSQALTNIETATAASINQFINTEINWIRGFLPPLPPIS
Sbjct  241  LGEPIVQAVLFNAIDFVDGTVTFSQALTNIETATAASINQFINTEINWIRGFLPPLPPIS  300

Query  301  PPGFPSLP  308
            PPGFPSLP
Sbjct  301  PPGFPSLP  308


>gi|289446762|ref|ZP_06436506.1| PE family protein [Mycobacterium tuberculosis CPHL_A]
 gi|289419720|gb|EFD16921.1| PE family protein [Mycobacterium tuberculosis CPHL_A]
Length=308

 Score =  595 bits (1534),  Expect = 3e-168, Method: Compositional matrix adjust.
 Identities = 307/308 (99%), Positives = 307/308 (99%), Gaps = 0/308 (0%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ
Sbjct  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAEASAAQTMVNAVNAPARALLGHPLISADA  120
            GYQQLSRQMMTAFHDQFVQALRASADAYATAEASAAQTMVNAVNAPARALLGHPLISADA
Sbjct  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAEASAAQTMVNAVNAPARALLGHPLISADA  120

Query  121  STGGGSNALSRVQSMFLGTGGSSALGGSAAANAAASGALQLQPTGGASGLSAVGALLPRA  180
            STGGGSNALSRVQSMFLGTGGSSALGGSAAANAAASGALQLQPTGGASGLSAVGALLPRA
Sbjct  121  STGGGSNALSRVQSMFLGTGGSSALGGSAAANAAASGALQLQPTGGASGLSAVGALLPRA  180

Query  181  GAAAAAALPALAAESIGNAIKNLYNAVEPWVQYGFNLTAWAVGWLPYIGILAPQINFFYY  240
            GAAAAAALPALAAESIGNAIKNLYNAVEPWVQYGFN TAWAVGWLPYIGILAPQINFFYY
Sbjct  181  GAAAAAALPALAAESIGNAIKNLYNAVEPWVQYGFNFTAWAVGWLPYIGILAPQINFFYY  240

Query  241  LGEPIVQAVLFNAIDFVDGTVTFSQALTNIETATAASINQFINTEINWIRGFLPPLPPIS  300
            LGEPIVQAVLFNAIDFVDGTVTFSQALTNIETATAASINQFINTEINWIRGFLPPLPPIS
Sbjct  241  LGEPIVQAVLFNAIDFVDGTVTFSQALTNIETATAASINQFINTEINWIRGFLPPLPPIS  300

Query  301  PPGFPSLP  308
            PPGFPSLP
Sbjct  301  PPGFPSLP  308


>gi|31792366|ref|NP_854859.1| PE family protein [Mycobacterium bovis AF2122/97]
 gi|121637104|ref|YP_977327.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224989577|ref|YP_002644264.1| PE family protein [Mycobacterium bovis BCG str. Tokyo 172]
 8 more sequence titles
 
gi|289573832|ref|ZP_06454059.1| PE family protein [Mycobacterium tuberculosis K85]
 gi|339631239|ref|YP_004722881.1| PE family protein [Mycobacterium africanum GM041182]
 gi|31617954|emb|CAD94066.1| PE FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121492751|emb|CAL71222.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224772690|dbj|BAH25496.1| PE family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|289538263|gb|EFD42841.1| PE family protein [Mycobacterium tuberculosis K85]
 gi|339330595|emb|CCC26263.1| PE family protein [Mycobacterium africanum GM041182]
 gi|341601120|emb|CCC63793.1| PE family protein [Mycobacterium bovis BCG str. Moreau RDJ]
Length=308

 Score =  595 bits (1533),  Expect = 4e-168, Method: Compositional matrix adjust.
 Identities = 307/308 (99%), Positives = 307/308 (99%), Gaps = 0/308 (0%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ
Sbjct  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAEASAAQTMVNAVNAPARALLGHPLISADA  120
            GYQQLSRQMMTAFHDQFVQALRASADAYATAEASAAQTMVNAVNAPARALLGHPLISADA
Sbjct  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAEASAAQTMVNAVNAPARALLGHPLISADA  120

Query  121  STGGGSNALSRVQSMFLGTGGSSALGGSAAANAAASGALQLQPTGGASGLSAVGALLPRA  180
            STGGGSNALSRV SMFLGTGGSSALGGSAAANAAASGALQLQPTGGASGLSAVGALLPRA
Sbjct  121  STGGGSNALSRVHSMFLGTGGSSALGGSAAANAAASGALQLQPTGGASGLSAVGALLPRA  180

Query  181  GAAAAAALPALAAESIGNAIKNLYNAVEPWVQYGFNLTAWAVGWLPYIGILAPQINFFYY  240
            GAAAAAALPALAAESIGNAIKNLYNAVEPWVQYGFNLTAWAVGWLPYIGILAPQINFFYY
Sbjct  181  GAAAAAALPALAAESIGNAIKNLYNAVEPWVQYGFNLTAWAVGWLPYIGILAPQINFFYY  240

Query  241  LGEPIVQAVLFNAIDFVDGTVTFSQALTNIETATAASINQFINTEINWIRGFLPPLPPIS  300
            LGEPIVQAVLFNAIDFVDGTVTFSQALTNIETATAASINQFINTEINWIRGFLPPLPPIS
Sbjct  241  LGEPIVQAVLFNAIDFVDGTVTFSQALTNIETATAASINQFINTEINWIRGFLPPLPPIS  300

Query  301  PPGFPSLP  308
            PPGFPSLP
Sbjct  301  PPGFPSLP  308


>gi|289744917|ref|ZP_06504295.1| PE family protein [Mycobacterium tuberculosis 02_1987]
 gi|289685445|gb|EFD52933.1| PE family protein [Mycobacterium tuberculosis 02_1987]
Length=280

 Score =  537 bits (1383),  Expect = 9e-151, Method: Compositional matrix adjust.
 Identities = 275/276 (99%), Positives = 276/276 (100%), Gaps = 0/276 (0%)

Query  33   AVPTTGVLAAAADEVSTQVAALLSAHAQGYQQLSRQMMTAFHDQFVQALRASADAYATAE  92
            AVPTTGVLAAAADEVSTQVAALLSAHAQGYQQLS+QMMTAFHDQFVQALRASADAYATAE
Sbjct  5    AVPTTGVLAAAADEVSTQVAALLSAHAQGYQQLSQQMMTAFHDQFVQALRASADAYATAE  64

Query  93   ASAAQTMVNAVNAPARALLGHPLISADASTGGGSNALSRVQSMFLGTGGSSALGGSAAAN  152
            ASAAQTMVNAVNAPARALLGHPLISADASTGGGSNALSRVQSMFLGTGGSSALGGSAAAN
Sbjct  65   ASAAQTMVNAVNAPARALLGHPLISADASTGGGSNALSRVQSMFLGTGGSSALGGSAAAN  124

Query  153  AAASGALQLQPTGGASGLSAVGALLPRAGAAAAAALPALAAESIGNAIKNLYNAVEPWVQ  212
            AAASGALQLQPTGGASGLSAVGALLPRAGAAAAAALPALAAESIGNAIKNLYNAVEPWVQ
Sbjct  125  AAASGALQLQPTGGASGLSAVGALLPRAGAAAAAALPALAAESIGNAIKNLYNAVEPWVQ  184

Query  213  YGFNLTAWAVGWLPYIGILAPQINFFYYLGEPIVQAVLFNAIDFVDGTVTFSQALTNIET  272
            YGFNLTAWAVGWLPYIGILAPQINFFYYLGEPIVQAVLFNAIDFVDGTVTFSQALTNIET
Sbjct  185  YGFNLTAWAVGWLPYIGILAPQINFFYYLGEPIVQAVLFNAIDFVDGTVTFSQALTNIET  244

Query  273  ATAASINQFINTEINWIRGFLPPLPPISPPGFPSLP  308
            ATAASINQFINTEINWIRGFLPPLPPISPPGFPSLP
Sbjct  245  ATAASINQFINTEINWIRGFLPPLPPISPPGFPSLP  280


>gi|289744916|ref|ZP_06504294.1| PE family protein [Mycobacterium tuberculosis 02_1987]
 gi|289685444|gb|EFD52932.1| PE family protein [Mycobacterium tuberculosis 02_1987]
Length=231

 Score =  420 bits (1080),  Expect = 1e-115, Method: Compositional matrix adjust.
 Identities = 214/215 (99%), Positives = 214/215 (99%), Gaps = 0/215 (0%)

Query  94   SAAQTMVNAVNAPARALLGHPLISADASTGGGSNALSRVQSMFLGTGGSSALGGSAAANA  153
             AAQTMVNAVNAPARALLGHPLISADASTGGGSNALSRVQSMFLGTGGSSALGGSAAANA
Sbjct  17   CAAQTMVNAVNAPARALLGHPLISADASTGGGSNALSRVQSMFLGTGGSSALGGSAAANA  76

Query  154  AASGALQLQPTGGASGLSAVGALLPRAGAAAAAALPALAAESIGNAIKNLYNAVEPWVQY  213
            AASGALQLQPTGGASGLSAVGALLPRAGAAAAAALPALAAESIGNAIKNLYNAVEPWVQY
Sbjct  77   AASGALQLQPTGGASGLSAVGALLPRAGAAAAAALPALAAESIGNAIKNLYNAVEPWVQY  136

Query  214  GFNLTAWAVGWLPYIGILAPQINFFYYLGEPIVQAVLFNAIDFVDGTVTFSQALTNIETA  273
            GFNLTAWAVGWLPYIGILAPQINFFYYLGEPIVQAVLFNAIDFVDGTVTFSQALTNIETA
Sbjct  137  GFNLTAWAVGWLPYIGILAPQINFFYYLGEPIVQAVLFNAIDFVDGTVTFSQALTNIETA  196

Query  274  TAASINQFINTEINWIRGFLPPLPPISPPGFPSLP  308
            TAASINQFINTEINWIRGFLPPLPPISPPGFPSLP
Sbjct  197  TAASINQFINTEINWIRGFLPPLPPISPPGFPSLP  231


>gi|183984253|ref|YP_001852544.1| PE family protein [Mycobacterium marinum M]
 gi|183177579|gb|ACC42689.1| PE family protein [Mycobacterium marinum M]
Length=288

 Score =  288 bits (736),  Expect = 9e-76, Method: Compositional matrix adjust.
 Identities = 173/290 (60%), Positives = 220/290 (76%), Gaps = 13/290 (4%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MS+V A PEAL AAA+D+AGIG+T+++AN  A+ PTTGVLAAA D+VS QVAAL S+H +
Sbjct  1    MSYVAAVPEALTAAASDVAGIGTTISSANAAASAPTTGVLAAAGDQVSAQVAALFSSHGE  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAEASAAQTMVNAVNAPARALLGHPLISADA  120
             YQ+LS Q+ T FHDQF  AL  SA++YA+AEA+AA+T+++AVN+PA  LLG PL+    
Sbjct  61   IYQRLSSQLST-FHDQFAAALNTSANSYASAEANAAKTLLSAVNSPAEKLLGQPLM---G  116

Query  121  STGGGSNALSRVQSMFLGTGGSSALGGSAAANAAASGALQLQPTGGASGLSAVGALLPRA  180
              G  +NA+S+VQS+F G  GS+ALG +A+        L L PTGGA+  +A G+LL   
Sbjct  117  QGGIVANAVSQVQSVFAG-AGSNALGANASM-------LALAPTGGAATAAASGSLLGPI  168

Query  181  GAAAAAALPALAAESIGNAIKNLYNAVEPWVQYGFNLTAWAVGWLPYIGILAPQINFFYY  240
             +AAAA    L   S+  AI+N Y AVEPWVQYGFNL +WAVGW+P+IGILAPQINFFYY
Sbjct  169  ASAAAAPAAILPV-SVATAIQNFYLAVEPWVQYGFNLASWAVGWVPWIGILAPQINFFYY  227

Query  241  LGEPIVQAVLFNAIDFVDGTVTFSQALTNIETATAASINQFINTEINWIR  290
            L EPIVQ+ LFN +D++DGT+TFSQ L+N  +AT AS+NQFI TEINWIR
Sbjct  228  LFEPIVQSGLFNTLDWLDGTITFSQGLSNFWSATTASVNQFIQTEINWIR  277


>gi|118616766|ref|YP_905098.1| PE family protein [Mycobacterium ulcerans Agy99]
 gi|118568876|gb|ABL03627.1| PE family protein [Mycobacterium ulcerans Agy99]
Length=295

 Score =  263 bits (672),  Expect = 2e-68, Method: Compositional matrix adjust.
 Identities = 172/297 (58%), Positives = 217/297 (74%), Gaps = 20/297 (6%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MS+V   PEAL AAA+D AGIG+T+++AN  A+ PTTGVLAAA D+VS QVAAL S+H +
Sbjct  1    MSYVATVPEALTAAASDAAGIGTTISSANAAASAPTTGVLAAAGDQVSAQVAALFSSHGE  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAEASAAQTMVNAVNAPARALLGHPLISADA  120
             YQ+LS Q+ T FHDQF  AL  SA++YA+AEA+AA+T+++AVN+PA  LLG PL+    
Sbjct  61   IYQRLSSQLST-FHDQFAAALNTSANSYASAEANAAKTLLSAVNSPAEKLLGQPLM---G  116

Query  121  STGGGSNALSRVQSMFLGTGGSSALGGSAAANAAASGALQLQPTGGASGLSAVGALLPRA  180
              G  +NA+S+VQS+F G  GS+ALG +A+        L L PTGGA+  +A G+LL   
Sbjct  117  QGGIVANAVSQVQSVFAG-AGSNALGANASM-------LALAPTGGAATAAASGSLLGPI  168

Query  181  GAAAAAALPALAAESIGNAIKNLYNAVEPWVQYGFNLTAWAVGWLPYIGILAPQINFFYY  240
             +AAAA    L   S+  AI+N   AVEPWVQYGFNL +WAVGW+P+IGILAPQINFFYY
Sbjct  169  ASAAAAPAAILPV-SVATAIQNFCLAVEPWVQYGFNLASWAVGWVPWIGILAPQINFFYY  227

Query  241  LGEPIVQAVLFNAIDFVDGTVTFSQALTNIE-------TATAASINQFINTEINWIR  290
            L EPIVQ+ LFN +D++DGTVTFSQ L+N         +AT AS+NQFI TEINWIR
Sbjct  228  LFEPIVQSGLFNTLDWLDGTVTFSQGLSNFSQGLSNFWSATTASVNQFIQTEINWIR  284


>gi|240171692|ref|ZP_04750351.1| PE family protein [Mycobacterium kansasii ATCC 12478]
Length=289

 Score =  238 bits (606),  Expect = 1e-60, Method: Compositional matrix adjust.
 Identities = 180/299 (61%), Positives = 220/299 (74%), Gaps = 11/299 (3%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MS++ AAPEALAAAA+++AGIGS ++AAN  AAVPTTGV A+AAD VS QVA L S+H Q
Sbjct  1    MSYLAAAPEALAAAASNVAGIGSEISAANAAAAVPTTGVTASAADAVSAQVATLFSSHGQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAEASAAQTMVNAVNAPARALLGHPLISADA  120
             YQ+LS Q+ T FHDQFVQAL A A+AYA+AEA+AA+T++ AV APA+ LLG PL     
Sbjct  61   VYQRLSAQLAT-FHDQFVQALSAGANAYASAEANAAKTLLGAVTAPAK-LLGQPL---TG  115

Query  121  STGGGSNALSRVQSMFLGTGGSSALGGSAAANAAASGALQLQPTGGASGLSAVGALLPRA  180
             TG   NA+S   S   G  GS ALGG+AA      GAL L PTGG   L+  GALL   
Sbjct  116  PTGLVPNAVSPAPSALSGALGSGALGGNAAV-----GALTLPPTGGLGALAGSGALLRPL  170

Query  181  GAAAAAALPALAAESIGNAIKNLYNAVEPWVQYGFNLTAWAVGWLPYIGILAPQINFFYY  240
              AAAA    +   S+  AI+N Y   EPWVQ+GF++ +WA GW+PYIGILAPQINFFYY
Sbjct  171  AGAAAAPAAVIPV-SVATAIQNFYLWAEPWVQWGFSVASWAAGWVPYIGILAPQINFFYY  229

Query  241  LGEPIVQAVLFNAIDFVDGTVTFSQALTNIETATAASINQFINTEINWIRGFLPPLPPI  299
            L EP+VQ+ LFN +D++DGT+TFSQ L+N  +AT AS+NQFINTEI+WIRGFLPP PP+
Sbjct  230  LFEPMVQSGLFNTLDWLDGTITFSQGLSNFWSATTASVNQFINTEISWIRGFLPPWPPL  288


>gi|183984531|ref|YP_001852822.1| PE-PGRS family protein [Mycobacterium marinum M]
 gi|183177857|gb|ACC42967.1| PE-PGRS family protein [Mycobacterium marinum M]
Length=569

 Score =  115 bits (287),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 71/119 (60%), Positives = 87/119 (74%), Gaps = 4/119 (3%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MS++FAAPE +A+AA D+AGIGS++NAA+V AA PTTGVLAA ADE+S  VA + +AHAQ
Sbjct  1    MSYLFAAPELVASAATDLAGIGSSINAASVAAAAPTTGVLAAGADEISAAVAGMFAAHAQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAEA---SAAQTMVNAVNAPARALLGHPLI  116
             YQ LS+Q  T FH QFVQ L + A AY  AEA   S  Q  ++AVNAP + L G PLI
Sbjct  61   AYQALSQQADT-FHAQFVQLLNSGASAYTGAEAANVSPLQQALDAVNAPVQQLTGRPLI  118


>gi|307083393|ref|ZP_07492506.1| hypothetical protein TMLG_01569 [Mycobacterium tuberculosis SUMu012]
 gi|308366809|gb|EFP55660.1| hypothetical protein TMLG_01569 [Mycobacterium tuberculosis SUMu012]
Length=182

 Score =  112 bits (280),  Expect = 8e-23, Method: Compositional matrix adjust.
 Identities = 72/130 (56%), Positives = 88/130 (68%), Gaps = 10/130 (7%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MS+V A PE +AAAA ++A IGSTL+AAN  A  PTTGVLAA ADEVS  VA+L S HAQ
Sbjct  1    MSYVLATPEMVAAAANNLAQIGSTLSAANAAALAPTTGVLAAGADEVSAAVASLFSGHAQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAEASAA---QTMVNAVNAPARALLGHPLIS  117
             YQ L  Q   AFH++F+QAL  +A AY +AEA+ A   Q  +N +NAP + LLG PLI 
Sbjct  61   AYQTLGTQ-AAAFHERFIQALSTAAGAYGSAEAANASPLQQALNVINAPTQTLLGRPLI-  118

Query  118  ADASTGGGSN  127
                 G G+N
Sbjct  119  -----GNGTN  123


>gi|339297525|gb|AEJ49635.1| PE-PGRS family protein [Mycobacterium tuberculosis CCDC5180]
Length=650

 Score =  112 bits (279),  Expect = 9e-23, Method: Compositional matrix adjust.
 Identities = 72/130 (56%), Positives = 88/130 (68%), Gaps = 10/130 (7%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MS+V A PE +AAAA ++A IGSTL+AAN  A  PTTGVLAA ADEVS  VA+L S HAQ
Sbjct  1    MSYVLATPEMVAAAANNLAQIGSTLSAANAAALAPTTGVLAAGADEVSAAVASLFSGHAQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAEASAA---QTMVNAVNAPARALLGHPLIS  117
             YQ L  Q   AFH++F+QAL  +A AY +AEA+ A   Q  +N +NAP + LLG PLI 
Sbjct  61   AYQTLGTQAA-AFHERFIQALSTAAGAYGSAEAANASPLQQALNVINAPTQTLLGRPLI-  118

Query  118  ADASTGGGSN  127
                 G G+N
Sbjct  119  -----GNGTN  123


>gi|240172746|ref|ZP_04751405.1| PE-PGRS family protein [Mycobacterium kansasii ATCC 12478]
Length=378

 Score =  112 bits (279),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 72/119 (61%), Positives = 87/119 (74%), Gaps = 4/119 (3%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            M FV A PE L AA++D+A +GS + AAN  AAVPTT +LAAA DEVS  +AAL  AHAQ
Sbjct  1    MLFVIATPEILTAASSDLAAVGSAVMAANTAAAVPTTRLLAAAQDEVSAAIAALFGAHAQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAEASAA---QTMVNAVNAPARALLGHPLI  116
             YQ +S Q   AFHDQFV+AL AS  +YA AEA+ A   QT+++AVNAP +ALLG PLI
Sbjct  61   EYQAISAQ-AAAFHDQFVRALTASGGSYAMAEAANASPFQTVLDAVNAPTQALLGRPLI  118


>gi|31794772|ref|NP_857265.1| PE-PGRS family protein [Mycobacterium bovis AF2122/97]
 gi|121639515|ref|YP_979739.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224992012|ref|YP_002646701.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|31620369|emb|CAD95812.1| PE-PGRS FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121495163|emb|CAL73649.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224775127|dbj|BAH27933.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|341603536|emb|CCC66217.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Moreau RDJ]
Length=492

 Score =  107 bits (267),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 72/117 (62%), Positives = 88/117 (76%), Gaps = 2/117 (1%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MSFV A PE L+AAA D+A +GST++AAN  A++PTTGVLAA AD+VS  +AAL  AHAQ
Sbjct  1    MSFVIAVPEFLSAAATDLANLGSTISAANAAASIPTTGVLAAGADDVSAAIAALFGAHAQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAEASAA-QTMVNAVNAPARALLGHPLI  116
             YQ +S Q  T FH QFVQ L A A AYA AEA+   Q+++NA+NAP +ALLG PLI
Sbjct  61   AYQTISAQAAT-FHAQFVQTLSAGAGAYANAEAANVQQSLLNAINAPTQALLGRPLI  116


>gi|148663460|ref|YP_001284983.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Ra]
 gi|148507612|gb|ABQ75421.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Ra]
Length=238

 Score =  107 bits (266),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 72/117 (62%), Positives = 88/117 (76%), Gaps = 2/117 (1%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MSFV A PE L+AAA D+A +GST++AAN  A++PTTGVLAA AD+VS  +AAL  AHAQ
Sbjct  1    MSFVIAVPEFLSAAATDLANLGSTISAANAAASIPTTGVLAAGADDVSAAIAALFGAHAQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAEASAA-QTMVNAVNAPARALLGHPLI  116
             YQ +S Q  T FH QFVQ L A A AYA AEA+   Q+++NA+NAP +ALLG PLI
Sbjct  61   AYQTISAQAAT-FHAQFVQTLSAGAGAYANAEAANVQQSLLNAINAPTQALLGRPLI  116


>gi|297636271|ref|ZP_06954051.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 4207]
Length=439

 Score =  106 bits (265),  Expect = 4e-21, Method: Compositional matrix adjust.
 Identities = 72/117 (62%), Positives = 88/117 (76%), Gaps = 2/117 (1%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MSFV A PE L+AAA D+A +GST++AAN  A++PTTGVLAA AD+VS  +AAL  AHAQ
Sbjct  1    MSFVIAVPEFLSAAATDLANLGSTISAANAAASIPTTGVLAAGADDVSAAIAALFGAHAQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAEASAA-QTMVNAVNAPARALLGHPLI  116
             YQ +S Q  T FH QFVQ L A A AYA AEA+   Q+++NA+NAP +ALLG PLI
Sbjct  61   AYQTISAQAAT-FHAQFVQTLSAGAGAYANAEAANVQQSLLNAINAPTQALLGRPLI  116


>gi|339633594|ref|YP_004725236.1| PE-PGRS family protein [Mycobacterium africanum GM041182]
 gi|340628560|ref|YP_004747012.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059]
 gi|339332950|emb|CCC28677.1| PE-PGRS family protein [Mycobacterium africanum GM041182]
 gi|340006750|emb|CCC45938.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059]
Length=448

 Score =  106 bits (265),  Expect = 5e-21, Method: Compositional matrix adjust.
 Identities = 72/117 (62%), Positives = 88/117 (76%), Gaps = 2/117 (1%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MSFV A PE L+AAA D+A +GST++AAN  A++PTTGVLAA AD+VS  +AAL  AHAQ
Sbjct  1    MSFVIAVPEFLSAAATDLANLGSTISAANAAASIPTTGVLAAGADDVSAAIAALFGAHAQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAEASAA-QTMVNAVNAPARALLGHPLI  116
             YQ +S Q  T FH QFVQ L A A AYA AEA+   Q+++NA+NAP +ALLG PLI
Sbjct  61   AYQTISAQAAT-FHAQFVQTLSAGAGAYANAEAANVQQSLLNAINAPTQALLGRPLI  116


>gi|313660595|ref|ZP_07817475.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN V2475]
Length=439

 Score =  106 bits (265),  Expect = 5e-21, Method: Compositional matrix adjust.
 Identities = 72/117 (62%), Positives = 88/117 (76%), Gaps = 2/117 (1%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MSFV A PE L+AAA D+A +GST++AAN  A++PTTGVLAA AD+VS  +AAL  AHAQ
Sbjct  1    MSFVIAVPEFLSAAATDLANLGSTISAANAAASIPTTGVLAAGADDVSAAIAALFGAHAQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAEASAA-QTMVNAVNAPARALLGHPLI  116
             YQ +S Q  T FH QFVQ L A A AYA AEA+   Q+++NA+NAP +ALLG PLI
Sbjct  61   AYQTISAQAAT-FHAQFVQTLSAGAGAYANAEAANVQQSLLNAINAPTQALLGRPLI  116


>gi|294993715|ref|ZP_06799406.1| PE-PGRS family protein [Mycobacterium tuberculosis 210]
Length=439

 Score =  106 bits (265),  Expect = 5e-21, Method: Compositional matrix adjust.
 Identities = 72/117 (62%), Positives = 88/117 (76%), Gaps = 2/117 (1%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MSFV A PE L+AAA D+A +GST++AAN  A++PTTGVLAA AD+VS  +AAL  AHAQ
Sbjct  1    MSFVIAVPEFLSAAATDLANLGSTISAANAAASIPTTGVLAAGADDVSAAIAALFGAHAQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAEASAA-QTMVNAVNAPARALLGHPLI  116
             YQ +S Q  T FH QFVQ L A A AYA AEA+   Q+++NA+NAP +ALLG PLI
Sbjct  61   AYQTISAQAAT-FHAQFVQTLSAGAGAYANAEAANVQQSLLNAINAPTQALLGRPLI  116


>gi|15843208|ref|NP_338245.1| PE_PGRS family protein [Mycobacterium tuberculosis CDC1551]
 gi|13883562|gb|AAK48059.1| PE_PGRS family protein [Mycobacterium tuberculosis CDC1551]
Length=436

 Score =  106 bits (265),  Expect = 5e-21, Method: Compositional matrix adjust.
 Identities = 72/117 (62%), Positives = 88/117 (76%), Gaps = 2/117 (1%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MSFV A PE L+AAA D+A +GST++AAN  A++PTTGVLAA AD+VS  +AAL  AHAQ
Sbjct  1    MSFVIAVPEFLSAAATDLANLGSTISAANAAASIPTTGVLAAGADDVSAAIAALFGAHAQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAEASAA-QTMVNAVNAPARALLGHPLI  116
             YQ +S Q  T FH QFVQ L A A AYA AEA+   Q+++NA+NAP +ALLG PLI
Sbjct  61   AYQTISAQAAT-FHAQFVQTLSAGAGAYANAEAANVQQSLLNAINAPTQALLGRPLI  116


>gi|57117130|ref|YP_177994.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Rv]
 gi|148824801|ref|YP_001289555.1| PE-PGRS family protein [Mycobacterium tuberculosis F11]
 gi|167968196|ref|ZP_02550473.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Ra]
 12 more sequence titles
 
gi|253800636|ref|YP_003033637.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 1435]
 gi|289555858|ref|ZP_06445068.1| predicted protein [Mycobacterium tuberculosis KZN 605]
 gi|7476154|pir||D70954 hypothetical glycine-rich protein Rv3595c - Mycobacterium tuberculosis 
(strain H37RV)
 gi|41352811|emb|CAE55619.1| PE-PGRS FAMILY PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|148723328|gb|ABR07953.1| PE-PGRS family protein [Mycobacterium tuberculosis F11]
 gi|253322139|gb|ACT26742.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 1435]
 gi|289440490|gb|EFD22983.1| predicted protein [Mycobacterium tuberculosis KZN 605]
 gi|326905434|gb|EGE52367.1| PE-PGRS family protein [Mycobacterium tuberculosis W-148]
 gi|328460367|gb|AEB05790.1| hypothetical protein TBSG_03661 [Mycobacterium tuberculosis KZN 
4207]
 gi|339296414|gb|AEJ48525.1| hypothetical protein CCDC5079_3336 [Mycobacterium tuberculosis 
CCDC5079]
 gi|339300015|gb|AEJ52125.1| hypothetical protein CCDC5180_3288 [Mycobacterium tuberculosis 
CCDC5180]
 gi|344221428|gb|AEN02059.1| PE-PGRS family protein [Mycobacterium tuberculosis CTRI-2]
Length=439

 Score =  106 bits (265),  Expect = 5e-21, Method: Compositional matrix adjust.
 Identities = 72/117 (62%), Positives = 88/117 (76%), Gaps = 2/117 (1%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MSFV A PE L+AAA D+A +GST++AAN  A++PTTGVLAA AD+VS  +AAL  AHAQ
Sbjct  1    MSFVIAVPEFLSAAATDLANLGSTISAANAAASIPTTGVLAAGADDVSAAIAALFGAHAQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAEASAA-QTMVNAVNAPARALLGHPLI  116
             YQ +S Q  T FH QFVQ L A A AYA AEA+   Q+++NA+NAP +ALLG PLI
Sbjct  61   AYQTISAQAAT-FHAQFVQTLSAGAGAYANAEAANVQQSLLNAINAPTQALLGRPLI  116


>gi|306777951|ref|ZP_07416288.1| hypothetical protein TMAG_00085 [Mycobacterium tuberculosis SUMu001]
 gi|308213723|gb|EFO73122.1| hypothetical protein TMAG_00085 [Mycobacterium tuberculosis SUMu001]
Length=165

 Score =  106 bits (264),  Expect = 5e-21, Method: Compositional matrix adjust.
 Identities = 72/117 (62%), Positives = 88/117 (76%), Gaps = 2/117 (1%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MSFV A PE L+AAA D+A +GST++AAN  A++PTTGVLAA AD+VS  +AAL  AHAQ
Sbjct  1    MSFVIAVPEFLSAAATDLANLGSTISAANAAASIPTTGVLAAGADDVSAAIAALFGAHAQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAEASAA-QTMVNAVNAPARALLGHPLI  116
             YQ +S Q  T FH QFVQ L A A AYA AEA+   Q+++NA+NAP +ALLG PLI
Sbjct  61   AYQTISAQAAT-FHAQFVQTLSAGAGAYANAEAANVQQSLLNAINAPTQALLGRPLI  116


>gi|306795977|ref|ZP_07434279.1| putative PE family protein [Mycobacterium tuberculosis SUMu006]
 gi|308343543|gb|EFP32394.1| putative PE family protein [Mycobacterium tuberculosis SUMu006]
Length=199

 Score =  106 bits (264),  Expect = 5e-21, Method: Compositional matrix adjust.
 Identities = 72/117 (62%), Positives = 88/117 (76%), Gaps = 2/117 (1%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MSFV A PE L+AAA D+A +GST++AAN  A++PTTGVLAA AD+VS  +AAL  AHAQ
Sbjct  1    MSFVIAVPEFLSAAATDLANLGSTISAANAAASIPTTGVLAAGADDVSAAIAALFGAHAQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAEASAA-QTMVNAVNAPARALLGHPLI  116
             YQ +S Q  T FH QFVQ L A A AYA AEA+   Q+++NA+NAP +ALLG PLI
Sbjct  61   AYQTISAQAAT-FHAQFVQTLSAGAGAYANAEAANVQQSLLNAINAPTQALLGRPLI  116


>gi|306801223|ref|ZP_07437891.1| putative PE family protein [Mycobacterium tuberculosis SUMu008]
 gi|306805437|ref|ZP_07442105.1| putative PE family protein [Mycobacterium tuberculosis SUMu007]
 gi|308348010|gb|EFP36861.1| putative PE family protein [Mycobacterium tuberculosis SUMu007]
 gi|308351951|gb|EFP40802.1| putative PE family protein [Mycobacterium tuberculosis SUMu008]
Length=172

 Score =  106 bits (264),  Expect = 5e-21, Method: Compositional matrix adjust.
 Identities = 72/117 (62%), Positives = 88/117 (76%), Gaps = 2/117 (1%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MSFV A PE L+AAA D+A +GST++AAN  A++PTTGVLAA AD+VS  +AAL  AHAQ
Sbjct  1    MSFVIAVPEFLSAAATDLANLGSTISAANAAASIPTTGVLAAGADDVSAAIAALFGAHAQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAEASAA-QTMVNAVNAPARALLGHPLI  116
             YQ +S Q  T FH QFVQ L A A AYA AEA+   Q+++NA+NAP +ALLG PLI
Sbjct  61   AYQTISAQAAT-FHAQFVQTLSAGAGAYANAEAANVQQSLLNAINAPTQALLGRPLI  116


>gi|306791192|ref|ZP_07429494.1| putative PE family protein [Mycobacterium tuberculosis SUMu005]
 gi|308340221|gb|EFP29072.1| putative PE family protein [Mycobacterium tuberculosis SUMu005]
Length=180

 Score =  106 bits (264),  Expect = 5e-21, Method: Compositional matrix adjust.
 Identities = 72/117 (62%), Positives = 88/117 (76%), Gaps = 2/117 (1%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MSFV A PE L+AAA D+A +GST++AAN  A++PTTGVLAA AD+VS  +AAL  AHAQ
Sbjct  1    MSFVIAVPEFLSAAATDLANLGSTISAANAAASIPTTGVLAAGADDVSAAIAALFGAHAQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAEASAA-QTMVNAVNAPARALLGHPLI  116
             YQ +S Q  T FH QFVQ L A A AYA AEA+   Q+++NA+NAP +ALLG PLI
Sbjct  61   AYQTISAQAAT-FHAQFVQTLSAGAGAYANAEAANVQQSLLNAINAPTQALLGRPLI  116


>gi|306790869|ref|ZP_07429191.1| putative PE family protein [Mycobacterium tuberculosis SUMu004]
 gi|308332728|gb|EFP21579.1| putative PE family protein [Mycobacterium tuberculosis SUMu004]
Length=182

 Score =  106 bits (264),  Expect = 5e-21, Method: Compositional matrix adjust.
 Identities = 72/117 (62%), Positives = 88/117 (76%), Gaps = 2/117 (1%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MSFV A PE L+AAA D+A +GST++AAN  A++PTTGVLAA AD+VS  +AAL  AHAQ
Sbjct  1    MSFVIAVPEFLSAAATDLANLGSTISAANAAASIPTTGVLAAGADDVSAAIAALFGAHAQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAEASAA-QTMVNAVNAPARALLGHPLI  116
             YQ +S Q  T FH QFVQ L A A AYA AEA+   Q+++NA+NAP +ALLG PLI
Sbjct  61   AYQTISAQAAT-FHAQFVQTLSAGAGAYANAEAANVQQSLLNAINAPTQALLGRPLI  116


>gi|306786503|ref|ZP_07424825.1| hypothetical protein TMCG_01093 [Mycobacterium tuberculosis SUMu003]
 gi|308328890|gb|EFP17741.1| hypothetical protein TMCG_01093 [Mycobacterium tuberculosis SUMu003]
Length=171

 Score =  106 bits (264),  Expect = 5e-21, Method: Compositional matrix adjust.
 Identities = 72/117 (62%), Positives = 88/117 (76%), Gaps = 2/117 (1%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MSFV A PE L+AAA D+A +GST++AAN  A++PTTGVLAA AD+VS  +AAL  AHAQ
Sbjct  1    MSFVIAVPEFLSAAATDLANLGSTISAANAAASIPTTGVLAAGADDVSAAIAALFGAHAQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAEASAA-QTMVNAVNAPARALLGHPLI  116
             YQ +S Q  T FH QFVQ L A A AYA AEA+   Q+++NA+NAP +ALLG PLI
Sbjct  61   AYQTISAQAAT-FHAQFVQTLSAGAGAYANAEAANVQQSLLNAINAPTQALLGRPLI  116


>gi|306974069|ref|ZP_07486730.1| putative PE family protein [Mycobacterium tuberculosis SUMu010]
 gi|308356586|gb|EFP45437.1| putative PE family protein [Mycobacterium tuberculosis SUMu010]
Length=159

 Score =  106 bits (264),  Expect = 5e-21, Method: Compositional matrix adjust.
 Identities = 72/117 (62%), Positives = 88/117 (76%), Gaps = 2/117 (1%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MSFV A PE L+AAA D+A +GST++AAN  A++PTTGVLAA AD+VS  +AAL  AHAQ
Sbjct  1    MSFVIAVPEFLSAAATDLANLGSTISAANAAASIPTTGVLAAGADDVSAAIAALFGAHAQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAEASAA-QTMVNAVNAPARALLGHPLI  116
             YQ +S Q  T FH QFVQ L A A AYA AEA+   Q+++NA+NAP +ALLG PLI
Sbjct  61   AYQTISAQAAT-FHAQFVQTLSAGAGAYANAEAANVQQSLLNAINAPTQALLGRPLI  116


>gi|254552706|ref|ZP_05143153.1| PE-PGRS family protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
Length=348

 Score =  106 bits (264),  Expect = 5e-21, Method: Compositional matrix adjust.
 Identities = 72/117 (62%), Positives = 88/117 (76%), Gaps = 2/117 (1%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MSFV A PE L+AAA D+A +GST++AAN  A++PTTGVLAA AD+VS  +AAL  AHAQ
Sbjct  1    MSFVIAVPEFLSAAATDLANLGSTISAANAAASIPTTGVLAAGADDVSAAIAALFGAHAQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAEASAA-QTMVNAVNAPARALLGHPLI  116
             YQ +S Q  T FH QFVQ L A A AYA AEA+   Q+++NA+NAP +ALLG PLI
Sbjct  61   AYQTISAQAAT-FHAQFVQTLSAGAGAYANAEAANVQQSLLNAINAPTQALLGRPLI  116


>gi|297733265|ref|ZP_06962383.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN R506]
Length=330

 Score =  106 bits (264),  Expect = 5e-21, Method: Compositional matrix adjust.
 Identities = 72/117 (62%), Positives = 88/117 (76%), Gaps = 2/117 (1%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MSFV A PE L+AAA D+A +GST++AAN  A++PTTGVLAA AD+VS  +AAL  AHAQ
Sbjct  1    MSFVIAVPEFLSAAATDLANLGSTISAANAAASIPTTGVLAAGADDVSAAIAALFGAHAQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAEASAA-QTMVNAVNAPARALLGHPLI  116
             YQ +S Q  T FH QFVQ L A A AYA AEA+   Q+++NA+NAP +ALLG PLI
Sbjct  61   AYQTISAQAAT-FHAQFVQTLSAGAGAYANAEAANVQQSLLNAINAPTQALLGRPLI  116


>gi|254234165|ref|ZP_04927489.1| PE-PGRS family protein [Mycobacterium tuberculosis C]
 gi|124603833|gb|EAY61796.1| PE-PGRS family protein [Mycobacterium tuberculosis C]
Length=327

 Score =  106 bits (264),  Expect = 6e-21, Method: Compositional matrix adjust.
 Identities = 72/117 (62%), Positives = 88/117 (76%), Gaps = 2/117 (1%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MSFV A PE L+AAA D+A +GST++AAN  A++PTTGVLAA AD+VS  +AAL  AHAQ
Sbjct  1    MSFVIAVPEFLSAAATDLANLGSTISAANAAASIPTTGVLAAGADDVSAAIAALFGAHAQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAEASAA-QTMVNAVNAPARALLGHPLI  116
             YQ +S Q  T FH QFVQ L A A AYA AEA+   Q+++NA+NAP +ALLG PLI
Sbjct  61   AYQTISAQAAT-FHAQFVQTLSAGAGAYANAEAANVQQSLLNAINAPTQALLGRPLI  116


>gi|289572250|ref|ZP_06452477.1| PE-PGRS family protein [Mycobacterium tuberculosis K85]
 gi|289536681|gb|EFD41259.1| PE-PGRS family protein [Mycobacterium tuberculosis K85]
Length=249

 Score =  105 bits (262),  Expect = 9e-21, Method: Compositional matrix adjust.
 Identities = 72/117 (62%), Positives = 88/117 (76%), Gaps = 2/117 (1%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MSFV A PE L+AAA D+A +GST++AAN  A++PTTGVLAA AD+VS  +AAL  AHAQ
Sbjct  1    MSFVIAVPEFLSAAATDLANLGSTISAANAAASIPTTGVLAAGADDVSAAIAALFGAHAQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAEASAA-QTMVNAVNAPARALLGHPLI  116
             YQ +S Q  T FH QFVQ L A A AYA AEA+   Q+++NA+NAP +ALLG PLI
Sbjct  61   AYQTISAQAAT-FHAQFVQTLSAGAGAYANAEAANVQQSLLNAINAPTQALLGRPLI  116


>gi|183980779|ref|YP_001849070.1| PE-PGRS family protein [Mycobacterium marinum M]
 gi|183174105|gb|ACC39215.1| PE-PGRS family protein [Mycobacterium marinum M]
Length=1058

 Score =  103 bits (258),  Expect = 3e-20, Method: Compositional matrix adjust.
 Identities = 59/116 (51%), Positives = 81/116 (70%), Gaps = 2/116 (1%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MS++ A P+ L+AAA D+AGIG+T+  A+  AA PTT V++AAADE+S Q+AAL  AH Q
Sbjct  1    MSYLIATPDLLSAAATDLAGIGNTIGQASYAAAAPTTAVISAAADEISMQIAALFGAHGQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAEASAAQTMVNAVNAPARALLGHPLI  116
             +Q +S Q    FHDQFVQAL  +  +   +  +A+Q ++N VNAP +ALL  PLI
Sbjct  61   SFQAVSSQ-AALFHDQFVQALT-TGASSYASAEAASQNLLNLVNAPTQALLNRPLI  114


>gi|340627405|ref|YP_004745857.1| pe_pgrs 33 [Mycobacterium canettii CIPT 140010059]
 gi|340005595|emb|CCC44759.1| pe_pgrs 33 [Mycobacterium canettii CIPT 140010059]
Length=506

 Score =  103 bits (257),  Expect = 4e-20, Method: Compositional matrix adjust.
 Identities = 71/123 (58%), Positives = 85/123 (70%), Gaps = 8/123 (6%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MSF+ A+PEALAA A D+ GIGS ++AAN VAA PTT +LAA  DEVST ++AL  AHAQ
Sbjct  1    MSFLIASPEALAATATDLTGIGSAISAANAVAAAPTTEILAAGTDEVSTAISALFGAHAQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAEASAAQ-------TMVNAVNAPARALLGH  113
             YQ LS   + AFHDQFV  L A A +Y  AEA+AA         ++NA+NAP  ALLG 
Sbjct  61   AYQALSAH-VAAFHDQFVHTLTAGAGSYMAAEAAAASPLQALQLELLNAINAPTLALLGR  119

Query  114  PLI  116
            PLI
Sbjct  120  PLI  122


>gi|289554051|ref|ZP_06443261.1| predicted protein [Mycobacterium tuberculosis KZN 605]
 gi|289438683|gb|EFD21176.1| predicted protein [Mycobacterium tuberculosis KZN 605]
Length=356

 Score = 99.4 bits (246),  Expect = 6e-19, Method: Compositional matrix adjust.
 Identities = 70/117 (60%), Positives = 91/117 (78%), Gaps = 2/117 (1%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MSFV AAPE +AAAA D+A IGS+++AA+  AA PT G+LAA ADEVS  ++AL  +HAQ
Sbjct  1    MSFVIAAPEVMAAAATDLANIGSSISAASAAAAGPTMGILAAGADEVSVAISALFGSHAQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAE-ASAAQTMVNAVNAPARALLGHPLI  116
            GYQ LS Q + A+H+QFV+AL A A +YA+AE A+  QT++NA+NAP + LLG PLI
Sbjct  61   GYQTLSAQ-LAAYHNQFVRALNAGAGSYASAEAANVQQTLLNAINAPTQTLLGRPLI  116


>gi|306780190|ref|ZP_07418527.1| hypothetical protein TMBG_00710 [Mycobacterium tuberculosis SUMu002]
 gi|308326906|gb|EFP15757.1| hypothetical protein TMBG_00710 [Mycobacterium tuberculosis SUMu002]
Length=164

 Score = 99.4 bits (246),  Expect = 6e-19, Method: Compositional matrix adjust.
 Identities = 70/117 (60%), Positives = 91/117 (78%), Gaps = 2/117 (1%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MSFV AAPE +AAAA D+A IGS+++AA+  AA PT G+LAA ADEVS  ++AL  +HAQ
Sbjct  1    MSFVIAAPEVMAAAATDLANIGSSISAASAAAAGPTMGILAAGADEVSVAISALFGSHAQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAE-ASAAQTMVNAVNAPARALLGHPLI  116
            GYQ LS Q + A+H+QFV+AL A A +YA+AE A+  QT++NA+NAP + LLG PLI
Sbjct  61   GYQTLSAQ-LAAYHNQFVRALNAGAGSYASAEAANVQQTLLNAINAPTQTLLGRPLI  116


>gi|306798021|ref|ZP_07436323.1| putative PE family protein [Mycobacterium tuberculosis SUMu006]
 gi|308341660|gb|EFP30511.1| putative PE family protein [Mycobacterium tuberculosis SUMu006]
Length=191

 Score = 99.4 bits (246),  Expect = 7e-19, Method: Compositional matrix adjust.
 Identities = 70/117 (60%), Positives = 91/117 (78%), Gaps = 2/117 (1%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MSFV AAPE +AAAA D+A IGS+++AA+  AA PT G+LAA ADEVS  ++AL  +HAQ
Sbjct  1    MSFVIAAPEVMAAAATDLANIGSSISAASAAAAGPTMGILAAGADEVSVAISALFGSHAQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAE-ASAAQTMVNAVNAPARALLGHPLI  116
            GYQ LS Q + A+H+QFV+AL A A +YA+AE A+  QT++NA+NAP + LLG PLI
Sbjct  61   GYQTLSAQ-LAAYHNQFVRALNAGAGSYASAEAANVQQTLLNAINAPTQTLLGRPLI  116


>gi|340627170|ref|YP_004745622.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059]
 gi|340005360|emb|CCC44518.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059]
Length=526

 Score = 99.4 bits (246),  Expect = 7e-19, Method: Compositional matrix adjust.
 Identities = 70/117 (60%), Positives = 91/117 (78%), Gaps = 2/117 (1%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MSFV AAPE +AAAA D+A IGS+++AA+  AA PT G+LAA ADEVS  ++AL  +HAQ
Sbjct  1    MSFVIAAPEVMAAAATDLANIGSSISAASAAAAGPTMGILAAGADEVSVAISALFGSHAQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAE-ASAAQTMVNAVNAPARALLGHPLI  116
            GYQ LS Q + A+H+QFV+AL A A +YA+AE A+  QT++NA+NAP + LLG PLI
Sbjct  61   GYQTLSAQ-LAAYHNQFVRALNAGAGSYASAEAANVQQTLLNAINAPTQTLLGRPLI  116


>gi|297634751|ref|ZP_06952531.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 4207]
Length=532

 Score = 99.0 bits (245),  Expect = 7e-19, Method: Compositional matrix adjust.
 Identities = 70/117 (60%), Positives = 91/117 (78%), Gaps = 2/117 (1%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MSFV AAPE +AAAA D+A IGS+++AA+  AA PT G+LAA ADEVS  ++AL  +HAQ
Sbjct  1    MSFVIAAPEVMAAAATDLANIGSSISAASAAAAGPTMGILAAGADEVSVAISALFGSHAQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAE-ASAAQTMVNAVNAPARALLGHPLI  116
            GYQ LS Q + A+H+QFV+AL A A +YA+AE A+  QT++NA+NAP + LLG PLI
Sbjct  61   GYQTLSAQ-LAAYHNQFVRALNAGAGSYASAEAANVQQTLLNAINAPTQTLLGRPLI  116


>gi|339632193|ref|YP_004723835.1| PE-PGRS family protein [Mycobacterium africanum GM041182]
 gi|339331549|emb|CCC27245.1| PE-PGRS family protein [Mycobacterium africanum GM041182]
Length=526

 Score = 99.0 bits (245),  Expect = 7e-19, Method: Compositional matrix adjust.
 Identities = 70/117 (60%), Positives = 91/117 (78%), Gaps = 2/117 (1%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MSFV AAPE +AAAA D+A IGS+++AA+  AA PT G+LAA ADEVS  ++AL  +HAQ
Sbjct  1    MSFVIAAPEVMAAAATDLANIGSSISAASAAAAGPTMGILAAGADEVSVAISALFGSHAQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAE-ASAAQTMVNAVNAPARALLGHPLI  116
            GYQ LS Q + A+H+QFV+AL A A +YA+AE A+  QT++NA+NAP + LLG PLI
Sbjct  61   GYQTLSAQ-LAAYHNQFVRALNAGAGSYASAEAANVQQTLLNAINAPTQTLLGRPLI  116


>gi|253798773|ref|YP_003031774.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 1435]
 gi|253320276|gb|ACT24879.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 1435]
 gi|328458536|gb|AEB03959.1| hypothetical protein TBSG_01830 [Mycobacterium tuberculosis KZN 
4207]
Length=532

 Score = 99.0 bits (245),  Expect = 7e-19, Method: Compositional matrix adjust.
 Identities = 70/117 (60%), Positives = 91/117 (78%), Gaps = 2/117 (1%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MSFV AAPE +AAAA D+A IGS+++AA+  AA PT G+LAA ADEVS  ++AL  +HAQ
Sbjct  1    MSFVIAAPEVMAAAATDLANIGSSISAASAAAAGPTMGILAAGADEVSVAISALFGSHAQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAE-ASAAQTMVNAVNAPARALLGHPLI  116
            GYQ LS Q + A+H+QFV+AL A A +YA+AE A+  QT++NA+NAP + LLG PLI
Sbjct  61   GYQTLSAQ-LAAYHNQFVRALNAGAGSYASAEAANVQQTLLNAINAPTQTLLGRPLI  116


>gi|15841654|ref|NP_336691.1| PE_PGRS family protein [Mycobacterium tuberculosis CDC1551]
 gi|57116953|ref|YP_177865.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Rv]
 gi|148661978|ref|YP_001283501.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Ra]
 9 more sequence titles
 
gi|148823371|ref|YP_001288125.1| PE-PGRS family protein [Mycobacterium tuberculosis F11]
 gi|294993548|ref|ZP_06799239.1| PE-PGRS family protein [Mycobacterium tuberculosis 210]
 gi|7476142|pir||F70580 hypothetical glycine-rich protein Rv2162c - Mycobacterium tuberculosis 
(strain H37RV)
 gi|13881907|gb|AAK46505.1| PE_PGRS family protein [Mycobacterium tuberculosis CDC1551]
 gi|38490318|emb|CAE55462.1| PE-PGRS FAMILY PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|148506130|gb|ABQ73939.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Ra]
 gi|148721898|gb|ABR06523.1| PE-PGRS family protein [Mycobacterium tuberculosis F11]
 gi|339295079|gb|AEJ47190.1| PE-PGRS family protein [Mycobacterium tuberculosis CCDC5079]
 gi|344219986|gb|AEN00617.1| PE-PGRS family protein [Mycobacterium tuberculosis CTRI-2]
Length=532

 Score = 99.0 bits (245),  Expect = 7e-19, Method: Compositional matrix adjust.
 Identities = 70/117 (60%), Positives = 91/117 (78%), Gaps = 2/117 (1%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MSFV AAPE +AAAA D+A IGS+++AA+  AA PT G+LAA ADEVS  ++AL  +HAQ
Sbjct  1    MSFVIAAPEVMAAAATDLANIGSSISAASAAAAGPTMGILAAGADEVSVAISALFGSHAQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAE-ASAAQTMVNAVNAPARALLGHPLI  116
            GYQ LS Q + A+H+QFV+AL A A +YA+AE A+  QT++NA+NAP + LLG PLI
Sbjct  61   GYQTLSAQ-LAAYHNQFVRALNAGAGSYASAEAANVQQTLLNAINAPTQTLLGRPLI  116


>gi|306789304|ref|ZP_07427626.1| putative PE family protein [Mycobacterium tuberculosis SUMu004]
 gi|308334175|gb|EFP23026.1| putative PE family protein [Mycobacterium tuberculosis SUMu004]
Length=193

 Score = 99.0 bits (245),  Expect = 8e-19, Method: Compositional matrix adjust.
 Identities = 70/117 (60%), Positives = 91/117 (78%), Gaps = 2/117 (1%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MSFV AAPE +AAAA D+A IGS+++AA+  AA PT G+LAA ADEVS  ++AL  +HAQ
Sbjct  1    MSFVIAAPEVMAAAATDLANIGSSISAASAAAAGPTMGILAAGADEVSVAISALFGSHAQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAE-ASAAQTMVNAVNAPARALLGHPLI  116
            GYQ LS Q + A+H+QFV+AL A A +YA+AE A+  QT++NA+NAP + LLG PLI
Sbjct  61   GYQTLSAQ-LAAYHNQFVRALNAGAGSYASAEAANVQQTLLNAINAPTQTLLGRPLI  116


>gi|31793342|ref|NP_855835.1| hypothetical protein Mb2186c [Mycobacterium bovis AF2122/97]
 gi|121638044|ref|YP_978268.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224990538|ref|YP_002645225.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|31618934|emb|CAD97039.1| conserved hypothetical protein, PE_PGRS [Mycobacterium bovis 
AF2122/97]
 gi|121493692|emb|CAL72167.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224773651|dbj|BAH26457.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|341602082|emb|CCC64756.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Moreau RDJ]
Length=490

 Score = 99.0 bits (245),  Expect = 8e-19, Method: Compositional matrix adjust.
 Identities = 70/117 (60%), Positives = 91/117 (78%), Gaps = 2/117 (1%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MSFV AAPE +AAAA D+A IGS+++AA+  AA PT G+LAA ADEVS  ++AL  +HAQ
Sbjct  1    MSFVIAAPEVMAAAATDLANIGSSISAASAAAAGPTMGILAAGADEVSVAISALFGSHAQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAE-ASAAQTMVNAVNAPARALLGHPLI  116
            GYQ LS Q + A+H+QFV+AL A A +YA+AE A+  QT++NA+NAP + LLG PLI
Sbjct  61   GYQTLSAQ-LAAYHNQFVRALNAGAGSYASAEAANVQQTLLNAINAPTQTLLGRPLI  116


>gi|306803901|ref|ZP_07440569.1| putative PE family protein [Mycobacterium tuberculosis SUMu008]
 gi|308349454|gb|EFP38305.1| putative PE family protein [Mycobacterium tuberculosis SUMu008]
Length=194

 Score = 99.0 bits (245),  Expect = 8e-19, Method: Compositional matrix adjust.
 Identities = 70/117 (60%), Positives = 91/117 (78%), Gaps = 2/117 (1%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MSFV AAPE +AAAA D+A IGS+++AA+  AA PT G+LAA ADEVS  ++AL  +HAQ
Sbjct  1    MSFVIAAPEVMAAAATDLANIGSSISAASAAAAGPTMGILAAGADEVSVAISALFGSHAQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAE-ASAAQTMVNAVNAPARALLGHPLI  116
            GYQ LS Q + A+H+QFV+AL A A +YA+AE A+  QT++NA+NAP + LLG PLI
Sbjct  61   GYQTLSAQ-LAAYHNQFVRALNAGAGSYASAEAANVQQTLLNAINAPTQTLLGRPLI  116


>gi|339298700|gb|AEJ50810.1| PE-PGRS family protein [Mycobacterium tuberculosis CCDC5180]
Length=532

 Score = 99.0 bits (245),  Expect = 8e-19, Method: Compositional matrix adjust.
 Identities = 70/117 (60%), Positives = 91/117 (78%), Gaps = 2/117 (1%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MSFV AAPE +AAAA D+A IGS+++AA+  AA PT G+LAA ADEVS  ++AL  +HAQ
Sbjct  1    MSFVIAAPEVMAAAATDLANIGSSISAASAAAAGPTMGILAAGADEVSVAISALFGSHAQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAE-ASAAQTMVNAVNAPARALLGHPLI  116
            GYQ LS Q + A+H+QFV+AL A A +YA+AE A+  QT++NA+NAP + LLG PLI
Sbjct  61   GYQTLSAQ-LAAYHNQFVRALNAGAGSYASAEAANVQQTLLNAINAPTQTLLGRPLI  116


>gi|306776413|ref|ZP_07414750.1| hypothetical protein TMAG_00351 [Mycobacterium tuberculosis SUMu001]
 gi|308215151|gb|EFO74550.1| hypothetical protein TMAG_00351 [Mycobacterium tuberculosis SUMu001]
Length=204

 Score = 99.0 bits (245),  Expect = 9e-19, Method: Compositional matrix adjust.
 Identities = 70/117 (60%), Positives = 91/117 (78%), Gaps = 2/117 (1%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MSFV AAPE +AAAA D+A IGS+++AA+  AA PT G+LAA ADEVS  ++AL  +HAQ
Sbjct  1    MSFVIAAPEVMAAAATDLANIGSSISAASAAAAGPTMGILAAGADEVSVAISALFGSHAQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAE-ASAAQTMVNAVNAPARALLGHPLI  116
            GYQ LS Q + A+H+QFV+AL A A +YA+AE A+  QT++NA+NAP + LLG PLI
Sbjct  61   GYQTLSAQ-LAAYHNQFVRALNAGAGSYASAEAANVQQTLLNAINAPTQTLLGRPLI  116


>gi|306784937|ref|ZP_07423259.1| hypothetical protein TMCG_00258 [Mycobacterium tuberculosis SUMu003]
 gi|308330342|gb|EFP19193.1| hypothetical protein TMCG_00258 [Mycobacterium tuberculosis SUMu003]
Length=184

 Score = 98.6 bits (244),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 70/117 (60%), Positives = 91/117 (78%), Gaps = 2/117 (1%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MSFV AAPE +AAAA D+A IGS+++AA+  AA PT G+LAA ADEVS  ++AL  +HAQ
Sbjct  1    MSFVIAAPEVMAAAATDLANIGSSISAASAAAAGPTMGILAAGADEVSVAISALFGSHAQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAE-ASAAQTMVNAVNAPARALLGHPLI  116
            GYQ LS Q + A+H+QFV+AL A A +YA+AE A+  QT++NA+NAP + LLG PLI
Sbjct  61   GYQTLSAQ-LAAYHNQFVRALNAGAGSYASAEAANVQQTLLNAINAPTQTLLGRPLI  116


>gi|297731742|ref|ZP_06960860.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN R506]
Length=207

 Score = 98.6 bits (244),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 70/117 (60%), Positives = 91/117 (78%), Gaps = 2/117 (1%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MSFV AAPE +AAAA D+A IGS+++AA+  AA PT G+LAA ADEVS  ++AL  +HAQ
Sbjct  1    MSFVIAAPEVMAAAATDLANIGSSISAASAAAAGPTMGILAAGADEVSVAISALFGSHAQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAE-ASAAQTMVNAVNAPARALLGHPLI  116
            GYQ LS Q + A+H+QFV+AL A A +YA+AE A+  QT++NA+NAP + LLG PLI
Sbjct  61   GYQTLSAQ-LAAYHNQFVRALNAGAGSYASAEAANVQQTLLNAINAPTQTLLGRPLI  116


>gi|254551200|ref|ZP_05141647.1| PE-PGRS family protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
Length=243

 Score = 98.6 bits (244),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 70/117 (60%), Positives = 91/117 (78%), Gaps = 2/117 (1%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MSFV AAPE +AAAA D+A IGS+++AA+  AA PT G+LAA ADEVS  ++AL  +HAQ
Sbjct  1    MSFVIAAPEVMAAAATDLANIGSSISAASAAAAGPTMGILAAGADEVSVAISALFGSHAQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAE-ASAAQTMVNAVNAPARALLGHPLI  116
            GYQ LS Q + A+H+QFV+AL A A +YA+AE A+  QT++NA+NAP + LLG PLI
Sbjct  61   GYQTLSAQ-LAAYHNQFVRALNAGAGSYASAEAANVQQTLLNAINAPTQTLLGRPLI  116


>gi|307084818|ref|ZP_07493931.1| putative PE family protein [Mycobacterium tuberculosis SUMu012]
 gi|308365610|gb|EFP54461.1| putative PE family protein [Mycobacterium tuberculosis SUMu012]
Length=176

 Score = 98.6 bits (244),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 70/117 (60%), Positives = 91/117 (78%), Gaps = 2/117 (1%)

Query  1    MSFVFAAPEALAAAAADMAGIGSTLNAANVVAAVPTTGVLAAAADEVSTQVAALLSAHAQ  60
            MSFV AAPE +AAAA D+A IGS+++AA+  AA PT G+LAA ADEVS  ++AL  +HAQ
Sbjct  1    MSFVIAAPEVMAAAATDLANIGSSISAASAAAAGPTMGILAAGADEVSVAISALFGSHAQ  60

Query  61   GYQQLSRQMMTAFHDQFVQALRASADAYATAE-ASAAQTMVNAVNAPARALLGHPLI  116
            GYQ LS Q + A+H+QFV+AL A A +YA+AE A+  QT++NA+NAP + LLG PLI
Sbjct  61   GYQTLSAQ-LAAYHNQFVRALNAGAGSYASAEAANVQQTLLNAINAPTQTLLGRPLI  116



Lambda     K      H
   0.317    0.128    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 524399257434


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40