BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1176c Length=189 Score E Sequences producing significant alignments: (Bits) Value gi|15608316|ref|NP_215692.1| hypothetical protein Rv1176c [Mycob... 385 2e-105 gi|15840619|ref|NP_335656.1| hypothetical protein MT1213 [Mycoba... 384 3e-105 gi|183984248|ref|YP_001852539.1| hypothetical protein MMAR_4275 ... 315 1e-84 gi|118616771|ref|YP_905103.1| hypothetical protein MUL_1024 [Myc... 310 9e-83 gi|333989803|ref|YP_004522417.1| hypothetical protein JDM601_116... 266 8e-70 gi|284033721|ref|YP_003383652.1| PadR-like family transcriptiona... 208 3e-52 gi|300782246|ref|YP_003762537.1| PadR family transcriptional reg... 207 5e-52 gi|226360539|ref|YP_002778317.1| PadR family transcriptional reg... 207 9e-52 gi|54023258|ref|YP_117500.1| putative transcriptional regulator ... 203 9e-51 gi|111018421|ref|YP_701393.1| hypothetical protein RHA1_ro01414 ... 203 1e-50 gi|229493999|ref|ZP_04387768.1| transcriptional regulator, PadR ... 200 1e-49 gi|312140417|ref|YP_004007753.1| padr family transcriptional reg... 199 1e-49 gi|226307344|ref|YP_002767304.1| PadR family transcriptional reg... 198 3e-49 gi|291006496|ref|ZP_06564469.1| putative transcriptional regulat... 193 1e-47 gi|134100699|ref|YP_001106360.1| putative transcriptional regula... 193 1e-47 gi|343927567|ref|ZP_08767037.1| putative PadR family transcripti... 187 7e-46 gi|169628419|ref|YP_001702068.1| hypothetical protein MAB_1326c ... 187 8e-46 gi|262201955|ref|YP_003273163.1| PadR family transcriptional reg... 184 4e-45 gi|302523628|ref|ZP_07275970.1| transcriptional regulator [Strep... 183 1e-44 gi|333918716|ref|YP_004492297.1| PadR family transcriptional reg... 178 4e-43 gi|297204687|ref|ZP_06922084.1| transcriptional regulator [Strep... 176 2e-42 gi|326382789|ref|ZP_08204479.1| transcriptional regulator PadR-l... 173 1e-41 gi|302556389|ref|ZP_07308731.1| transcriptional regulator [Strep... 168 4e-40 gi|340794726|ref|YP_004760189.1| PadR DNA-binding transcription ... 167 9e-40 gi|296392796|ref|YP_003657680.1| PadR family transcriptional reg... 166 1e-39 gi|126347703|emb|CAJ89418.1| putative transcriptional regulator ... 166 2e-39 gi|344998080|ref|YP_004800934.1| PadR-like family transcriptiona... 165 2e-39 gi|302532445|ref|ZP_07284787.1| transcriptional regulator [Strep... 165 3e-39 gi|254384323|ref|ZP_04999666.1| conserved hypothetical protein [... 161 5e-38 gi|119718793|ref|YP_925758.1| PadR family transcriptional regula... 161 5e-38 gi|296139070|ref|YP_003646313.1| PadR-like family transcriptiona... 161 6e-38 gi|311742086|ref|ZP_07715896.1| transcriptional repressor [Aerom... 160 6e-38 gi|320012358|gb|ADW07208.1| transcriptional regulator, PadR-like... 160 9e-38 gi|328880569|emb|CCA53808.1| Transcriptional regulator, PadR fam... 156 1e-36 gi|239985972|ref|ZP_04706636.1| PadR-like family transcriptional... 156 2e-36 gi|326780908|ref|ZP_08240173.1| transcriptional regulator, PadR-... 155 2e-36 gi|182440245|ref|YP_001827964.1| PadR-like family transcriptiona... 155 2e-36 gi|158334450|ref|YP_001515622.1| PadR family transcriptional reg... 146 2e-33 gi|163841291|ref|YP_001625696.1| transcriptional repressor [Reni... 144 5e-33 gi|309810656|ref|ZP_07704466.1| transcriptional regulator, PadR ... 142 2e-32 gi|312602796|ref|YP_004022641.1| transcriptional repressor PadR ... 137 9e-31 gi|186684838|ref|YP_001868034.1| PadR-like family transcriptiona... 132 3e-29 gi|89900678|ref|YP_523149.1| PadR-like protein family transcript... 129 2e-28 gi|311899486|dbj|BAJ31894.1| putative PadR family transcriptiona... 128 4e-28 gi|260220418|emb|CBA27935.1| hypothetical protein Csp_A04770 [Cu... 128 5e-28 gi|119477854|ref|ZP_01617977.1| hypothetical protein GP2143_0189... 127 6e-28 gi|158335694|ref|YP_001516866.1| PadR family transcriptional reg... 127 6e-28 gi|237653161|ref|YP_002889475.1| PadR-like family transcriptiona... 125 4e-27 gi|90580873|ref|ZP_01236675.1| Putative transcriptional regulato... 124 5e-27 gi|89075194|ref|ZP_01161625.1| Putative transcriptional regulato... 124 7e-27 >gi|15608316|ref|NP_215692.1| hypothetical protein Rv1176c [Mycobacterium tuberculosis H37Rv] gi|31792370|ref|NP_854863.1| hypothetical protein Mb1209c [Mycobacterium bovis AF2122/97] gi|121637108|ref|YP_977331.1| hypothetical protein BCG_1239c [Mycobacterium bovis BCG str. Pasteur 1173P2] 78 more sequence titles Length=189 Score = 385 bits (989), Expect = 2e-105, Method: Compositional matrix adjust. Identities = 189/189 (100%), Positives = 189/189 (100%), Gaps = 0/189 (0%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ Sbjct 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 Query 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA 120 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA Sbjct 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA 120 Query 121 LYTQVTALRAERVKSLDTYRGIEKRTFADPSALDGAALHQYLVLRGGIRAEESAIDWLDE 180 LYTQVTALRAERVKSLDTYRGIEKRTFADPSALDGAALHQYLVLRGGIRAEESAIDWLDE Sbjct 121 LYTQVTALRAERVKSLDTYRGIEKRTFADPSALDGAALHQYLVLRGGIRAEESAIDWLDE 180 Query 181 VAEALQEKR 189 VAEALQEKR Sbjct 181 VAEALQEKR 189 >gi|15840619|ref|NP_335656.1| hypothetical protein MT1213 [Mycobacterium tuberculosis CDC1551] gi|13880801|gb|AAK45470.1| hypothetical protein MT1213 [Mycobacterium tuberculosis CDC1551] Length=247 Score = 384 bits (987), Expect = 3e-105, Method: Compositional matrix adjust. Identities = 189/189 (100%), Positives = 189/189 (100%), Gaps = 0/189 (0%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ Sbjct 59 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 118 Query 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA 120 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA Sbjct 119 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA 178 Query 121 LYTQVTALRAERVKSLDTYRGIEKRTFADPSALDGAALHQYLVLRGGIRAEESAIDWLDE 180 LYTQVTALRAERVKSLDTYRGIEKRTFADPSALDGAALHQYLVLRGGIRAEESAIDWLDE Sbjct 179 LYTQVTALRAERVKSLDTYRGIEKRTFADPSALDGAALHQYLVLRGGIRAEESAIDWLDE 238 Query 181 VAEALQEKR 189 VAEALQEKR Sbjct 239 VAEALQEKR 247 >gi|183984248|ref|YP_001852539.1| hypothetical protein MMAR_4275 [Mycobacterium marinum M] gi|183177574|gb|ACC42684.1| conserved hypothetical protein [Mycobacterium marinum M] Length=188 Score = 315 bits (808), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 153/188 (82%), Positives = 168/188 (90%), Gaps = 0/188 (0%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 MALPHAILVSL EQA SGYELA RFDRSIG+FWTATHQQIYRTLR+ME+N WV A V+Q Sbjct 1 MALPHAILVSLSEQAGSGYELANRFDRSIGHFWTATHQQIYRTLRLMESNGWVHAKPVVQ 60 Query 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA 120 HGRPDKKVY++SD+GR ELARWIAEP SPTRPGR SALTDSSTRDIAVKLRGA YGD Sbjct 61 HGRPDKKVYSVSDNGRQELARWIAEPPSPTRPGRASALTDSSTRDIAVKLRGAVYGDRET 120 Query 121 LYTQVTALRAERVKSLDTYRGIEKRTFADPSALDGAALHQYLVLRGGIRAEESAIDWLDE 180 L +QV ALRAERV++LDTYRGIEK +F DPSAL GAALHQY+VLRGGIRAEESAI+WL E Sbjct 121 LRSQVAALRAERVQALDTYRGIEKHSFPDPSALSGAALHQYVVLRGGIRAEESAIEWLGE 180 Query 181 VAEALQEK 188 VA+AL+EK Sbjct 181 VAQALEEK 188 >gi|118616771|ref|YP_905103.1| hypothetical protein MUL_1024 [Mycobacterium ulcerans Agy99] gi|118568881|gb|ABL03632.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] Length=247 Score = 310 bits (793), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 151/188 (81%), Positives = 167/188 (89%), Gaps = 0/188 (0%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 +ALPHAILVSL EQA SGYELA RFDRSIG+FWTATHQQIYRTLR+ME+N WV A V+Q Sbjct 60 VALPHAILVSLSEQAGSGYELAHRFDRSIGHFWTATHQQIYRTLRLMESNGWVHAKPVVQ 119 Query 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA 120 HGRPDKKVY++SD+GR ELARWIAEP SPTRPGR SALTDSSTRDIAVKLRGA YGD Sbjct 120 HGRPDKKVYSVSDNGRQELARWIAEPPSPTRPGRASALTDSSTRDIAVKLRGAVYGDRET 179 Query 121 LYTQVTALRAERVKSLDTYRGIEKRTFADPSALDGAALHQYLVLRGGIRAEESAIDWLDE 180 L +QV ALRA RV++LDTYRGIEK +F DPSAL GAALHQY+VLRGGIRAEESAI+WL E Sbjct 180 LRSQVAALRAGRVQALDTYRGIEKHSFPDPSALSGAALHQYVVLRGGIRAEESAIEWLGE 239 Query 181 VAEALQEK 188 VA+AL+EK Sbjct 240 VAQALEEK 247 >gi|333989803|ref|YP_004522417.1| hypothetical protein JDM601_1163 [Mycobacterium sp. JDM601] gi|333485771|gb|AEF35163.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=182 Score = 266 bits (681), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 131/186 (71%), Positives = 150/186 (81%), Gaps = 4/186 (2%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 MALPHAILVSL EQA SGYELA RFDRSIGYFW+ATHQQIYRTLR ME + WV AT V Q Sbjct 1 MALPHAILVSLSEQAGSGYELANRFDRSIGYFWSATHQQIYRTLRGMEADGWVVATEVAQ 60 Query 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA 120 GRPDKKVY ++++GR ELARW+A PL+ GRGS++ D+ R++AVK+RGAGYGD AA Sbjct 61 RGRPDKKVYTVAEAGRDELARWLAAPLA----GRGSSIVDNRLRELAVKIRGAGYGDAAA 116 Query 121 LYTQVTALRAERVKSLDTYRGIEKRTFADPSALDGAALHQYLVLRGGIRAEESAIDWLDE 180 + Q LRAER LD YR +EK+ F DP +L GAALHQYLVLRGGIRAEESAIDWLDE Sbjct 117 VREQAVMLRAERSARLDVYRALEKKQFPDPGSLSGAALHQYLVLRGGIRAEESAIDWLDE 176 Query 181 VAEALQ 186 V EAL+ Sbjct 177 VKEALR 182 >gi|284033721|ref|YP_003383652.1| PadR-like family transcriptional regulator [Kribbella flavida DSM 17836] gi|283813014|gb|ADB34853.1| transcriptional regulator, PadR-like family [Kribbella flavida DSM 17836] Length=181 Score = 208 bits (530), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 108/186 (59%), Positives = 126/186 (68%), Gaps = 10/186 (5%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 MAL HA+LVSL E+ SGYELARRFDRSIG+FW ATHQQIYR LR ME WV T V Q Sbjct 1 MALEHALLVSLSEREGSGYELARRFDRSIGFFWAATHQQIYRVLRRMEEAGWVTHTDVAQ 60 Query 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA 120 GRPDKKVY ++ +G AEL RW+AEP+ PT L D ++ VKLRGA GD AA Sbjct 61 EGRPDKKVYRVAKAGAAELTRWLAEPIEPT------MLRD----ELGVKLRGASLGDQAA 110 Query 121 LYTQVTALRAERVKSLDTYRGIEKRTFADPSALDGAALHQYLVLRGGIRAEESAIDWLDE 180 + +V RAE L+ YR IE R F P+ L G LHQYLVLRGG+RAE+S +W DE Sbjct 111 VLREVERHRAEHAARLEAYRAIECRDFPRPAKLSGRELHQYLVLRGGVRAEQSFTEWCDE 170 Query 181 VAEALQ 186 V AL+ Sbjct 171 VVRALR 176 >gi|300782246|ref|YP_003762537.1| PadR family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299791760|gb|ADJ42135.1| PadR family transcriptional regulator [Amycolatopsis mediterranei U32] gi|340523606|gb|AEK38811.1| PadR family transcriptional regulator [Amycolatopsis mediterranei S699] Length=181 Score = 207 bits (528), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 106/189 (57%), Positives = 126/189 (67%), Gaps = 11/189 (5%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 MAL HAILVSL E+A SGYEL RRF++SIG FW+ATHQQIYR L+ ME WV V Q Sbjct 1 MALEHAILVSLSERAGSGYELTRRFEKSIGLFWSATHQQIYRVLKRMEEAGWVAVDVVAQ 60 Query 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA 120 GRPDKKVY +SD GRAEL RW+AEP P G ++AVK+RGA +GD A Sbjct 61 SGRPDKKVYTVSDRGRAELVRWLAEP----DPSAGPV-------ELAVKIRGATFGDPAK 109 Query 121 LYTQVTALRAERVKSLDTYRGIEKRTFADPSALDGAALHQYLVLRGGIRAEESAIDWLDE 180 + ++ RA+ + LD YR IEKR F P+AL G LHQYLVLRGGIR EE ++W DE Sbjct 110 VAEEIVRHRAKHAERLDVYRQIEKRDFPAPAALTGRHLHQYLVLRGGIRVEEGQVEWFDE 169 Query 181 VAEALQEKR 189 V AL + Sbjct 170 VLTALHHPK 178 >gi|226360539|ref|YP_002778317.1| PadR family transcriptional regulator [Rhodococcus opacus B4] gi|226239024|dbj|BAH49372.1| putative PadR family transcriptional regulator [Rhodococcus opacus B4] Length=177 Score = 207 bits (526), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 108/187 (58%), Positives = 125/187 (67%), Gaps = 10/187 (5%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 MAL HA+LVSL E + SGYELARRFD+SIG+F +ATHQQIYR L+ M WV A V Q Sbjct 1 MALEHALLVSLTEHSGSGYELARRFDKSIGFFQSATHQQIYRVLKRMGEAGWVDAEVVAQ 60 Query 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA 120 GRPDKKVY +S +GRAELARWIAEP P + ++AVK+R AG+GDVAA Sbjct 61 DGRPDKKVYRVSAAGRAELARWIAEPTEP----------NHLRNELAVKIRAAGHGDVAA 110 Query 121 LYTQVTALRAERVKSLDTYRGIEKRTFADPSALDGAALHQYLVLRGGIRAEESAIDWLDE 180 L +V R L+ YR IEKR F P L GAALHQYLVLRGGIR EE DW E Sbjct 111 LTAEVARHRDGHAARLEVYRMIEKRDFPAPDQLSGAALHQYLVLRGGIRVEEGFADWCQE 170 Query 181 VAEALQE 187 V +AL + Sbjct 171 VLDALSQ 177 >gi|54023258|ref|YP_117500.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] gi|54014766|dbj|BAD56136.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] Length=181 Score = 203 bits (517), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 104/191 (55%), Positives = 129/191 (68%), Gaps = 14/191 (7%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 MAL HA+LVSL E++ SGYELARRFD+SIG+FW ATHQQIYR L+ ME W+ +V Q Sbjct 1 MALEHALLVSLTERSGSGYELARRFDKSIGFFWNATHQQIYRVLKRMEEAGWLDVESVAQ 60 Query 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSST--RDIAVKLRGAGYGDV 118 GRPDKKVY+++ +GRAELARWIAEP +DS T ++ VK+RGA YGD+ Sbjct 61 EGRPDKKVYSVNAAGRAELARWIAEP------------SDSETPRSELGVKIRGAAYGDL 108 Query 119 AALYTQVTALRAERVKSLDTYRGIEKRTFADPSALDGAALHQYLVLRGGIRAEESAIDWL 178 A+ +V R + LD R IEKR F DP L G ALHQYLVLRGGIR ++W Sbjct 109 DAVCAEVARHRDQHAHRLDVLRLIEKRDFPDPDRLTGTALHQYLVLRGGIRVAAGHVEWC 168 Query 179 DEVAEALQEKR 189 +EV +AL+ R Sbjct 169 EEVLQALRPPR 179 >gi|111018421|ref|YP_701393.1| hypothetical protein RHA1_ro01414 [Rhodococcus jostii RHA1] gi|110817951|gb|ABG93235.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=177 Score = 203 bits (516), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 105/185 (57%), Positives = 125/185 (68%), Gaps = 10/185 (5%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 MAL HA+LVSL E + SGYELARRFD+SIG+F +ATHQQIYR L+ M+ + WV A V Q Sbjct 1 MALEHALLVSLTEHSGSGYELARRFDKSIGFFQSATHQQIYRVLKRMDESGWVDAEVVAQ 60 Query 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA 120 GRPDKKVY +S +GRAEL RWIAEP P + ++AVK+R A +GD+AA Sbjct 61 VGRPDKKVYRVSAAGRAELERWIAEPTEP----------NHLRNELAVKIRAAQHGDIAA 110 Query 121 LYTQVTALRAERVKSLDTYRGIEKRTFADPSALDGAALHQYLVLRGGIRAEESAIDWLDE 180 L +V R L+ YR IEKR F P+ L GAALHQYLVLRGGIR EE DW E Sbjct 111 LTAEVARHRDGHAARLEVYRMIEKRDFPAPAQLSGAALHQYLVLRGGIRVEEGFADWCQE 170 Query 181 VAEAL 185 V +AL Sbjct 171 VLDAL 175 >gi|229493999|ref|ZP_04387768.1| transcriptional regulator, PadR family [Rhodococcus erythropolis SK121] gi|229319068|gb|EEN84920.1| transcriptional regulator, PadR family [Rhodococcus erythropolis SK121] Length=204 Score = 200 bits (508), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 100/185 (55%), Positives = 125/185 (68%), Gaps = 10/185 (5%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 MAL HA+LVSL EQ +SGY+L RRFD+SIG+F +ATHQQIYR L+ M+ WV + Q Sbjct 1 MALEHALLVSLSEQDASGYDLTRRFDKSIGFFHSATHQQIYRVLKRMDEAGWVEVEAIAQ 60 Query 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA 120 GRPDKK+Y +SD+GRAELARWIAEP P + ++A+K+R A + D+ A Sbjct 61 DGRPDKKMYRVSDAGRAELARWIAEPSEP----------NHLRNELAIKIRAAAHADLPA 110 Query 121 LYTQVTALRAERVKSLDTYRGIEKRTFADPSALDGAALHQYLVLRGGIRAEESAIDWLDE 180 L +V R LD YR IEKR F +P+AL G++LHQYLVLRGGIR EE DW E Sbjct 111 LRREVARHRDGHAARLDVYRLIEKRDFPNPAALSGSSLHQYLVLRGGIRVEEGFTDWCQE 170 Query 181 VAEAL 185 V +AL Sbjct 171 VLDAL 175 >gi|312140417|ref|YP_004007753.1| padr family transcriptional regulator [Rhodococcus equi 103S] gi|325675973|ref|ZP_08155656.1| PadR family transcriptional regulator [Rhodococcus equi ATCC 33707] gi|311889756|emb|CBH49073.1| putative PadR family transcriptional regulator [Rhodococcus equi 103S] gi|325553211|gb|EGD22890.1| PadR family transcriptional regulator [Rhodococcus equi ATCC 33707] Length=184 Score = 199 bits (506), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 104/185 (57%), Positives = 122/185 (66%), Gaps = 10/185 (5%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 MAL HAILVSL EQ+ SGYELARRFDRSIG+FW+ATHQQIYR L+ M++ WV + Q Sbjct 1 MALEHAILVSLSEQSGSGYELARRFDRSIGFFWSATHQQIYRVLKRMDDAGWVTGEAIAQ 60 Query 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA 120 GRPDKKVY +S +GRAELARWIAE PT PG ++AVK+RGA YGD + Sbjct 61 DGRPDKKVYRVSTAGRAELARWIAE---PTEPGH-------LRNELAVKIRGASYGDPGS 110 Query 121 LYTQVTALRAERVKSLDTYRGIEKRTFADPSALDGAALHQYLVLRGGIRAEESAIDWLDE 180 L +V R E LD Y I F + G ALHQ+LVLRGGIR E+ +DW DE Sbjct 111 LLAEVRRHRDEHAARLDLYHRIADHDFPESRPRSGRALHQFLVLRGGIRVEQGFVDWCDE 170 Query 181 VAEAL 185 V AL Sbjct 171 VLAAL 175 >gi|226307344|ref|YP_002767304.1| PadR family transcriptional regulator [Rhodococcus erythropolis PR4] gi|226186461|dbj|BAH34565.1| putative PadR family transcriptional regulator [Rhodococcus erythropolis PR4] Length=204 Score = 198 bits (504), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 99/185 (54%), Positives = 124/185 (68%), Gaps = 10/185 (5%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 MAL HA+LVSL EQ +SGY+L RRFD+SIG+F +ATHQQIYR L+ M+ WV + Q Sbjct 1 MALEHALLVSLSEQDASGYDLTRRFDKSIGFFHSATHQQIYRVLKRMDEAGWVEVEAIAQ 60 Query 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA 120 GRPDKK+Y +SD+GRAEL RWIAEP P + ++A+K+R A + D+ A Sbjct 61 DGRPDKKMYRVSDAGRAELTRWIAEPSEP----------NHLRNELAIKIRAAAHADLPA 110 Query 121 LYTQVTALRAERVKSLDTYRGIEKRTFADPSALDGAALHQYLVLRGGIRAEESAIDWLDE 180 L +V R LD YR IEKR F +P+AL G++LHQYLVLRGGIR EE DW E Sbjct 111 LRREVARHRDGHAARLDVYRLIEKRDFPNPAALSGSSLHQYLVLRGGIRVEEGFTDWCQE 170 Query 181 VAEAL 185 V +AL Sbjct 171 VLDAL 175 >gi|291006496|ref|ZP_06564469.1| putative transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length=189 Score = 193 bits (490), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 96/186 (52%), Positives = 123/186 (67%), Gaps = 10/186 (5%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 MAL HAILVSL E++ SGYELARRF +SIG+FW A+HQQIYRTL+ M W+ V Q Sbjct 1 MALEHAILVSLEERSGSGYELARRFGKSIGFFWAASHQQIYRTLKRMVELGWISCDHVAQ 60 Query 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA 120 RPDKKVY ++ GRAELARW+AEP+ P + D+AVK+RGA GDV Sbjct 61 ESRPDKKVYRVNADGRAELARWLAEPVEPG----------AIRNDLAVKIRGASAGDVGG 110 Query 121 LYTQVTALRAERVKSLDTYRGIEKRTFADPSALDGAALHQYLVLRGGIRAEESAIDWLDE 180 + ++ R + ++ YR IE+R F +P L G LHQYLVLRGGIR E++ +DW DE Sbjct 111 VLDEIARHRRRHAERIEVYRAIERRDFGEPDRLTGRHLHQYLVLRGGIRVEQAFVDWCDE 170 Query 181 VAEALQ 186 V A++ Sbjct 171 VLAAMR 176 >gi|134100699|ref|YP_001106360.1| putative transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133913322|emb|CAM03435.1| putative transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length=196 Score = 193 bits (490), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 96/186 (52%), Positives = 123/186 (67%), Gaps = 10/186 (5%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 MAL HAILVSL E++ SGYELARRF +SIG+FW A+HQQIYRTL+ M W+ V Q Sbjct 8 MALEHAILVSLEERSGSGYELARRFGKSIGFFWAASHQQIYRTLKRMVELGWISCDHVAQ 67 Query 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA 120 RPDKKVY ++ GRAELARW+AEP+ P + D+AVK+RGA GDV Sbjct 68 ESRPDKKVYRVNADGRAELARWLAEPVEPG----------AIRNDLAVKIRGASAGDVGG 117 Query 121 LYTQVTALRAERVKSLDTYRGIEKRTFADPSALDGAALHQYLVLRGGIRAEESAIDWLDE 180 + ++ R + ++ YR IE+R F +P L G LHQYLVLRGGIR E++ +DW DE Sbjct 118 VLDEIARHRRRHAERIEVYRAIERRDFGEPDRLTGRHLHQYLVLRGGIRVEQAFVDWCDE 177 Query 181 VAEALQ 186 V A++ Sbjct 178 VLAAMR 183 >gi|343927567|ref|ZP_08767037.1| putative PadR family transcriptional regulator [Gordonia alkanivorans NBRC 16433] gi|343762555|dbj|GAA13963.1| putative PadR family transcriptional regulator [Gordonia alkanivorans NBRC 16433] Length=187 Score = 187 bits (475), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 96/186 (52%), Positives = 123/186 (67%), Gaps = 10/186 (5%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 MAL HAILVSL E+ +GYE+ ++FDRSIGYFW+ATHQQIYRTL+ + ++ V ++ Q Sbjct 1 MALEHAILVSLAERPGTGYEIGQQFDRSIGYFWSATHQQIYRTLKKLLDDGLVSVESISQ 60 Query 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA 120 GRPDKKVY ISDSGR LA+W P +P + R DI VKLR A +GD+AA Sbjct 61 DGRPDKKVYTISDSGRDALAQWAMSP-TPRQALRS---------DIGVKLRAAEFGDLAA 110 Query 121 LYTQVTALRAERVKSLDTYRGIEKRTFADPSALDGAALHQYLVLRGGIRAEESAIDWLDE 180 + ++ A R E V L ++G + + +P L G LHQYLVLRGGIR EE I+W DE Sbjct 111 IIGELKAHRDEHVAQLTLFKGFQADYYPEPDTLTGRKLHQYLVLRGGIRQEEGYIEWCDE 170 Query 181 VAEALQ 186 V AL+ Sbjct 171 VIPALE 176 >gi|169628419|ref|YP_001702068.1| hypothetical protein MAB_1326c [Mycobacterium abscessus ATCC 19977] gi|169240386|emb|CAM61414.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=189 Score = 187 bits (474), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 98/185 (53%), Positives = 121/185 (66%), Gaps = 12/185 (6%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 MAL HA+L+SL EQ+ SGYEL RFDRSIGYF++ATHQQIYRTLR ME+++W+ V Q Sbjct 1 MALTHALLLSLAEQSGSGYELTNRFDRSIGYFYSATHQQIYRTLRRMEDDSWLHCQVVDQ 60 Query 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA 120 GRP KKVY +++ G EL+RWIA S TD RD+A+K+R A Y D Sbjct 61 EGRPAKKVYTVAELGYRELSRWIA----------SSEGTD--MRDLALKVRAATYADSDV 108 Query 121 LYTQVTALRAERVKSLDTYRGIEKRTFADPSALDGAALHQYLVLRGGIRAEESAIDWLDE 180 + Q+ A R +L+ Y ++KR F P L GAALHQYLVLRGGIR EE DW DE Sbjct 109 VIEQIRAQRNAHAAALEGYLHMQKRQFPAPDQLSGAALHQYLVLRGGIRMEEGFTDWCDE 168 Query 181 VAEAL 185 + AL Sbjct 169 MLSAL 173 >gi|262201955|ref|YP_003273163.1| PadR family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262085302|gb|ACY21270.1| Transcriptional regulator PadR-like protein [Gordonia bronchialis DSM 43247] Length=181 Score = 184 bits (468), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 96/186 (52%), Positives = 119/186 (64%), Gaps = 10/186 (5%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 MAL HAILVSL E+ +GYE+ ++FDRSIGYFW+ATHQQIYRTL+ + + V +V Q Sbjct 1 MALEHAILVSLAERPGTGYEIGQQFDRSIGYFWSATHQQIYRTLKKLHSEGLVSFESVSQ 60 Query 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA 120 GRPDKK+Y IS+SGR LA W P +P +P D+ VKLR A +GD+AA Sbjct 61 DGRPDKKLYTISESGRKVLADWAMSP-TPLQPLHS---------DLGVKLRAAEFGDLAA 110 Query 121 LYTQVTALRAERVKSLDTYRGIEKRTFADPSALDGAALHQYLVLRGGIRAEESAIDWLDE 180 + ++ A R E + L YRG + P L G LHQYLVLRGGIR EE IDW DE Sbjct 111 IIGELKAHRDEHLAQLQLYRGFADDYYPAPETLTGRKLHQYLVLRGGIRQEEGFIDWCDE 170 Query 181 VAEALQ 186 V AL+ Sbjct 171 VIVALE 176 >gi|302523628|ref|ZP_07275970.1| transcriptional regulator [Streptomyces sp. AA4] gi|302432523|gb|EFL04339.1| transcriptional regulator [Streptomyces sp. AA4] Length=187 Score = 183 bits (465), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 98/186 (53%), Positives = 126/186 (68%), Gaps = 11/186 (5%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 MAL HAILVSL E++ SGYELARRF++SIG FW+A+HQQIYR L+ ME V V+Q Sbjct 6 MALEHAILVSLSERSGSGYELARRFEKSIGLFWSASHQQIYRVLKRMEEAGQVAVDVVVQ 65 Query 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA 120 GRPDKKVY +++ GR EL RW+AEP SP + +++AVKLRGA +GD A Sbjct 66 DGRPDKKVYTVAEPGRVELRRWLAEP-SP----------QAGPQELAVKLRGASFGDPEA 114 Query 121 LYTQVTALRAERVKSLDTYRGIEKRTFADPSALDGAALHQYLVLRGGIRAEESAIDWLDE 180 + ++T R + L+ Y IEKR F P L G +LHQYLVLRGGIR EE ++WL+E Sbjct 115 VAAEITRHRDAHAERLELYHQIEKRDFPAPDRLRGRSLHQYLVLRGGIRVEEGQVEWLEE 174 Query 181 VAEALQ 186 + AL+ Sbjct 175 ILTALR 180 >gi|333918716|ref|YP_004492297.1| PadR family transcriptional regulator [Amycolicicoccus subflavus DQS3-9A1] gi|333480937|gb|AEF39497.1| PadR family transcriptional regulator [Amycolicicoccus subflavus DQS3-9A1] Length=196 Score = 178 bits (451), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 95/179 (54%), Positives = 111/179 (63%), Gaps = 10/179 (5%) Query 3 LPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQHG 62 + HAILVSL E+A SGYELARRFDRSIGYFW+A+HQQIYRTL+ M + WV V Q Sbjct 1 MEHAILVSLMERAGSGYELARRFDRSIGYFWSASHQQIYRTLKRMADVGWVNQEVVYQDA 60 Query 63 RPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAALY 122 RPDKKVY S G+ L WI+E T +S +AVKLRGA YGD AL Sbjct 61 RPDKKVYRPSTEGQKALRAWISEKTGET----------NSRATLAVKLRGASYGDAGALV 110 Query 123 TQVTALRAERVKSLDTYRGIEKRTFADPSALDGAALHQYLVLRGGIRAEESAIDWLDEV 181 Q T R ++ L YR IE R F D +L G ALHQYLVLR GI E++ +W EV Sbjct 111 EQFTQYRDTALRQLAVYREIEARDFPDAESLTGRALHQYLVLRAGILEEQTLAEWCSEV 169 >gi|297204687|ref|ZP_06922084.1| transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|197710755|gb|EDY54789.1| transcriptional regulator [Streptomyces sviceus ATCC 29083] Length=190 Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 97/193 (51%), Positives = 119/193 (62%), Gaps = 18/193 (9%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 MAL HAILVSL E+ +SGYELARRF+RSIGYFWTATHQQIYR L+ MEN+ WV A V Q Sbjct 1 MALEHAILVSLLEKPASGYELARRFERSIGYFWTATHQQIYRVLKRMENDGWVDARDVPQ 60 Query 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA 120 HGRPDKK Y+++D GRA L+ W+ +P+ P +S D+AVK+RGA + D AA Sbjct 61 HGRPDKKEYSVADLGRAALSSWLHDPIEP----------ESVRHDLAVKIRGAAFDDPAA 110 Query 121 LYTQVTALRAERVKSLDTYRGIEKRTFADPSA--------LDGAALHQYLVLRGGIRAEE 172 L +V R L Y E+R F P A LD Q++VLRGGI E Sbjct 111 LIQEVERHRQAHRDRLAHYLAGEERDFTGPEANAAPPDAPLDAERELQHVVLRGGIAYER 170 Query 173 SAIDWLDEVAEAL 185 I WL++V L Sbjct 171 MMIGWLEDVLATL 183 >gi|326382789|ref|ZP_08204479.1| transcriptional regulator PadR-like protein [Gordonia neofelifaecis NRRL B-59395] gi|326198379|gb|EGD55563.1| transcriptional regulator PadR-like protein [Gordonia neofelifaecis NRRL B-59395] Length=191 Score = 173 bits (438), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 89/188 (48%), Positives = 118/188 (63%), Gaps = 10/188 (5%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 MAL HAILVSL E+ +GYE+ ++F RSIGYFW+ATHQQIYRTL+ + ++ V ++ Q Sbjct 1 MALEHAILVSLSERPGTGYEIGQQFSRSIGYFWSATHQQIYRTLKKLHSDGLVSFESIAQ 60 Query 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA 120 GRPDKKVY +SD+GR LA W+ P +P P R D+ VKLR A GD+ Sbjct 61 DGRPDKKVYTLSDAGRDMLADWVNSP-TPLAPLRS---------DLGVKLRAADLGDLPT 110 Query 121 LYTQVTALRAERVKSLDTYRGIEKRTFADPSALDGAALHQYLVLRGGIRAEESAIDWLDE 180 + ++ A R E L YRG ++ + DP AL G L QYLVLRGG+R E ++W DE Sbjct 111 VIAELRAHRDEAAAMLAVYRGWVEQYYPDPDALTGRKLGQYLVLRGGVRMSEHTVEWCDE 170 Query 181 VAEALQEK 188 V + Q + Sbjct 171 VLDRFQRE 178 >gi|302556389|ref|ZP_07308731.1| transcriptional regulator [Streptomyces viridochromogenes DSM 40736] gi|302474007|gb|EFL37100.1| transcriptional regulator [Streptomyces viridochromogenes DSM 40736] Length=190 Score = 168 bits (425), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 95/193 (50%), Positives = 117/193 (61%), Gaps = 18/193 (9%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 MAL HAILVSL E+ SGYELARRF+RSIGYFWTATHQQIYR L+ MEN+ WV + V Q Sbjct 1 MALEHAILVSLLEKPGSGYELARRFERSIGYFWTATHQQIYRVLKRMENDGWVESRDVPQ 60 Query 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA 120 GRPDKK Y+++D GRA L+ W+ +P+ P +S D+AVK+RGA + D AA Sbjct 61 QGRPDKKEYSVADLGRAALSSWLHDPIEP----------ESVRHDLAVKIRGAAFDDPAA 110 Query 121 LYTQVTALRAERVKSLDTYRGIEKRTFA--------DPSALDGAALHQYLVLRGGIRAEE 172 L +V R L Y E+R F +ALD Q++VLRGGI E Sbjct 111 LIREVERHRHAHGDRLAHYLAGEERDFTEPEAGPAAPEAALDAERELQHVVLRGGIAYER 170 Query 173 SAIDWLDEVAEAL 185 I WLD+V L Sbjct 171 MMISWLDDVLATL 183 >gi|340794726|ref|YP_004760189.1| PadR DNA-binding transcription regulator [Corynebacterium variabile DSM 44702] gi|340534636|gb|AEK37116.1| PadR DNA-binding transcription regulator [Corynebacterium variabile DSM 44702] Length=208 Score = 167 bits (422), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 94/192 (49%), Positives = 118/192 (62%), Gaps = 16/192 (8%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 MAL HAI++SL E+ +GYEL+R+F S+G+FW AT QQIYRTL + + V V Q Sbjct 27 MALDHAIMISLAERPGTGYELSRQFSTSLGHFWPATRQQIYRTLSRLHDGGLVTCEDVPQ 86 Query 61 HGRPDKKVYAISDSGRAELARWIAEPLS-PTRPGRGSALTDSSTRDIAVKLRGAGYGDVA 119 GRPDKK+Y +S +G LA WIAEP + PT L DS + VKLRGA +GD+A Sbjct 87 QGRPDKKIYTLSPTGEDALASWIAEPSAVPT-------LRDS----LGVKLRGAEHGDLA 135 Query 120 ALYTQVTALRAERVKSLDTYRGIEKRTF----ADPSALDGAALHQYLVLRGGIRAEESAI 175 + T V R + L YRG F +DP+AL G LHQYLVLRGGIR EE + Sbjct 136 DVLTDVRHHRTVHAERLSLYRGYAVTQFPEATSDPTALTGRRLHQYLVLRGGIRMEEGFV 195 Query 176 DWLDEVAEALQE 187 W DEV E L++ Sbjct 196 AWCDEVLETLEK 207 >gi|296392796|ref|YP_003657680.1| PadR family transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296179943|gb|ADG96849.1| transcriptional regulator, PadR-like family [Segniliparus rotundus DSM 44985] Length=186 Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 92/187 (50%), Positives = 121/187 (65%), Gaps = 13/187 (6%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 MAL HA+LVSL E+ S+GY+LARRFD+SI +FW+A+HQQIYRTL+ + W V Q Sbjct 1 MALEHALLVSLAERPSTGYDLARRFDKSISFFWSASHQQIYRTLQRIVAAEWATCEVVRQ 60 Query 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA 120 +G+PDKKVY+IS+ G+AELA+W+ +P G L ++ VKLRG +GD Sbjct 61 NGKPDKKVYSISEEGKAELAKWV------NKPSSGPIL----RWELPVKLRGLAHGDPDV 110 Query 121 LYTQVTALRAERVKSLDTYRGIEKRTFADPSA-LDGAALHQYLVLRGGIRAEESAIDWLD 179 L + A R + V++L YR E R F P+A L GA L+Q LVL GIR E+ I WLD Sbjct 111 LVKDLRAHREQAVRTLAHYRDSEARHF--PAAPLTGAPLYQRLVLEAGIRQAEALIAWLD 168 Query 180 EVAEALQ 186 E A AL+ Sbjct 169 EAAAALE 175 >gi|126347703|emb|CAJ89418.1| putative transcriptional regulator [Streptomyces ambofaciens ATCC 23877] Length=190 Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 94/192 (49%), Positives = 115/192 (60%), Gaps = 13/192 (6%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 MAL HAILVSL E+ SGYELARRF+RSIGYFWTATHQQIYR LR ME + + V Q Sbjct 1 MALEHAILVSLLEKPGSGYELARRFERSIGYFWTATHQQIYRVLRRMEADGLLDVHEVAQ 60 Query 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA 120 GRPDKK Y+++ GRA LA W+ EP+ P +S ++AVK+RGA +GD +A Sbjct 61 RGRPDKKEYSVAPPGRAALAAWLHEPVQP----------ESIRHELAVKIRGAAFGDPSA 110 Query 121 LYTQVTALRAERVKSLDTYRGIEKRTFADPS---ALDGAALHQYLVLRGGIRAEESAIDW 177 L +V R L Y E R F P +LD Q++VLRGGI E I W Sbjct 111 LIAEVERHRDAHDDRLRRYLAGEARDFGAPDVPRSLDVGQELQHVVLRGGIAFERMTIAW 170 Query 178 LDEVAEALQEKR 189 LD+V + L R Sbjct 171 LDDVLDTLHRLR 182 >gi|344998080|ref|YP_004800934.1| PadR-like family transcriptional regulator [Streptomyces sp. SirexAA-E] gi|344313706|gb|AEN08394.1| transcriptional regulator, PadR-like family [Streptomyces sp. SirexAA-E] Length=188 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 95/191 (50%), Positives = 117/191 (62%), Gaps = 17/191 (8%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 MAL HAILVSL EQ SGYELARRF+RSIGYFWTATHQQIYR L+ ME++ + + Q Sbjct 1 MALDHAILVSLLEQPGSGYELARRFERSIGYFWTATHQQIYRVLKRMESDGLLDVRDIPQ 60 Query 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA 120 GRPDKK Y+++ GR LA W+ EP+ P +S D+AVK+RGA + D AA Sbjct 61 QGRPDKKEYSVAGPGRDALAAWLHEPIEP----------ESLRHDLAVKIRGAAFDDPAA 110 Query 121 LYTQVTALRAERVKS--LDTYRGIEKRTFADPSA---LDGAALHQYLVLRGGIRAEESAI 175 L +V R RV S L+ Y E+R F P A LD Q++VLRGGI E + Sbjct 111 LIREVE--RHHRVHSERLEHYLTGERRDFTGPGAPAPLDAGQELQHVVLRGGIAYERMTV 168 Query 176 DWLDEVAEALQ 186 WLD+V L Sbjct 169 AWLDDVLATLH 179 >gi|302532445|ref|ZP_07284787.1| transcriptional regulator [Streptomyces sp. C] gi|302441340|gb|EFL13156.1| transcriptional regulator [Streptomyces sp. C] Length=183 Score = 165 bits (418), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 98/191 (52%), Positives = 113/191 (60%), Gaps = 17/191 (8%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 MAL HAILVSL E SGYELARRFDRSIGYFWTATHQQIYR L ME + + A V Q Sbjct 1 MALDHAILVSLLEMPGSGYELARRFDRSIGYFWTATHQQIYRVLGRMERDGLLTARAVAQ 60 Query 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA 120 GRPDKK Y+++ GRA L+RW+ EP+ P +S D+AVK+RGA + D AA Sbjct 61 QGRPDKKEYSVAGPGRAALSRWLHEPIEP----------ESMRHDLAVKIRGAAFDDPAA 110 Query 121 LYTQVTALRAERVKS--LDTYRGIEKRTFADPSA---LDGAALHQYLVLRGGIRAEESAI 175 L +V R RV L Y E R F P A LD Q+ VLRGGI E I Sbjct 111 LIREVE--RHHRVHGERLAHYLAGELRDFTGPEAPAPLDAGQELQHAVLRGGIAYERMTI 168 Query 176 DWLDEVAEALQ 186 WLD+V L Sbjct 169 AWLDDVLATLH 179 >gi|254384323|ref|ZP_04999666.1| conserved hypothetical protein [Streptomyces sp. Mg1] gi|194343211|gb|EDX24177.1| conserved hypothetical protein [Streptomyces sp. Mg1] Length=188 Score = 161 bits (407), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 92/184 (50%), Positives = 110/184 (60%), Gaps = 13/184 (7%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 MAL HAILVSL E+ SGYELARRFDRSIGYFWTATHQQIYR L ME+ + V Q Sbjct 1 MALEHAILVSLLEKPGSGYELARRFDRSIGYFWTATHQQIYRVLARMESAGLLAVRVVAQ 60 Query 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA 120 GRPDKK Y+++ GRA L++W+ EP+ P +S D+AVK+RGA + D AA Sbjct 61 QGRPDKKEYSVAAPGRAALSQWLHEPIEP----------ESLRHDLAVKIRGAAFDDPAA 110 Query 121 LYTQVTALRAERVKSLDTYRGIEKRTFADPSA---LDGAALHQYLVLRGGIRAEESAIDW 177 L +V R L Y E R F P A D Q++VLRGGI E I W Sbjct 111 LVREVERHRRVHGDRLAHYLAGELRDFTGPEAPAPPDAGQELQHVVLRGGIAYERMTIAW 170 Query 178 LDEV 181 LD+V Sbjct 171 LDDV 174 >gi|119718793|ref|YP_925758.1| PadR family transcriptional regulator [Nocardioides sp. JS614] gi|119539454|gb|ABL84071.1| transcriptional regulator, PadR family [Nocardioides sp. JS614] Length=181 Score = 161 bits (407), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 93/181 (52%), Positives = 112/181 (62%), Gaps = 11/181 (6%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 MAL HA+LV+L EQ +SG +LA+RFDRSIG+FW ATHQQIYR L M+ + WVR TTV Q Sbjct 1 MALEHALLVALREQPASGLDLAKRFDRSIGFFWHATHQQIYRVLARMDADGWVRVTTVEQ 60 Query 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA 120 GRPDKKVY ++ +G L W+A P S P R ++AVKLRGA +GD A Sbjct 61 TGRPDKKVYDVTPAGAEVLGSWLAAP-SEAEPLRS---------ELAVKLRGASFGDRDA 110 Query 121 LYTQVTALRAERVKSLDTYRGIEKRTFADPSAL-DGAALHQYLVLRGGIRAEESAIDWLD 179 + V A+ LD YRG+ R + P L D L QYLVLRGGI EE I WL Sbjct 111 VLEVVRGNLADHRLRLDHYRGLMARDYPRPDELRDPLELDQYLVLRGGILLEEMWIAWLT 170 Query 180 E 180 E Sbjct 171 E 171 >gi|296139070|ref|YP_003646313.1| PadR-like family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296027204|gb|ADG77974.1| transcriptional regulator, PadR-like family [Tsukamurella paurometabola DSM 20162] Length=190 Score = 161 bits (407), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 84/185 (46%), Positives = 116/185 (63%), Gaps = 10/185 (5%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 +AL HA+LVSL E++ +GY+L RRFDRSIG++W A+HQQIY+TL M ++ V Q Sbjct 4 VALEHALLVSLSERSGTGYQLTRRFDRSIGHWWRASHQQIYKTLGRMTDSGLVTFVEQAQ 63 Query 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA 120 G+PDKKVY+I+D GRA L+ WI P G +TD R++A K+RGA D+ Sbjct 64 DGKPDKKVYSITDCGRAALSEWIRTP--------GKDVTDR--RELATKIRGAAPSDLPD 113 Query 121 LYTQVTALRAERVKSLDTYRGIEKRTFADPSALDGAALHQYLVLRGGIRAEESAIDWLDE 180 L ++ +R + +R E + P+ L G AL QYLVLRGG+ +E+ +DWLDE Sbjct 114 LTAEIRRIRNLHAERAALFRAFEADDYPSPADLTGTALQQYLVLRGGVLSEQGTVDWLDE 173 Query 181 VAEAL 185 V AL Sbjct 174 VLAAL 178 >gi|311742086|ref|ZP_07715896.1| transcriptional repressor [Aeromicrobium marinum DSM 15272] gi|311314579|gb|EFQ84486.1| transcriptional repressor [Aeromicrobium marinum DSM 15272] Length=183 Score = 160 bits (406), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 88/181 (49%), Positives = 111/181 (62%), Gaps = 10/181 (5%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 MAL HAILVSL E+++SGYELARRFD SIG FW A+HQQIY+ L ME V + V Q Sbjct 1 MALEHAILVSLAERSASGYELARRFDASIGNFWKASHQQIYKVLGRMETGGQVASELVEQ 60 Query 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA 120 GRPDKKVYAI+ SGR EL+RW+ P +P R + AVKLR D A Sbjct 61 DGRPDKKVYAITTSGRDELSRWVGTP-TPAEALRS---------EFAVKLRALHLADPAT 110 Query 121 LYTQVTALRAERVKSLDTYRGIEKRTFADPSALDGAALHQYLVLRGGIRAEESAIDWLDE 180 L V R + + L Y ++ + DP+A+ AL YLVLRGG+ AE++ +DW DE Sbjct 111 LRADVGRRRVQHTEKLAYYEASRQKFYPDPAAVSPEALGGYLVLRGGMLAEQAGLDWCDE 170 Query 181 V 181 + Sbjct 171 I 171 >gi|320012358|gb|ADW07208.1| transcriptional regulator, PadR-like family [Streptomyces flavogriseus ATCC 33331] Length=188 Score = 160 bits (405), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 95/191 (50%), Positives = 114/191 (60%), Gaps = 17/191 (8%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 MAL HAILVSL EQ SGYELARRF+RSIGYFWTATHQQIYR L+ ME + + V Q Sbjct 1 MALEHAILVSLLEQPGSGYELARRFERSIGYFWTATHQQIYRVLKRMEGDGLLDVRDVPQ 60 Query 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA 120 RPDKK Y+++ GRA L+ W+ EP+ P +S D+AVK+RGA + D AA Sbjct 61 ERRPDKKEYSVAGPGRAALSGWLHEPIEP----------ESLRHDLAVKIRGAAFDDPAA 110 Query 121 LYTQVTALRAERVKS--LDTYRGIEKRTFADPSA---LDGAALHQYLVLRGGIRAEESAI 175 L +V R RV S L Y E R F P A LD Q++VLRGGI E + Sbjct 111 LLDEVE--RHHRVHSDRLAHYLTGELRDFTGPDAPAPLDAGQELQHVVLRGGIAYERMTV 168 Query 176 DWLDEVAEALQ 186 WLD+V L Sbjct 169 AWLDDVLATLH 179 >gi|328880569|emb|CCA53808.1| Transcriptional regulator, PadR family [Streptomyces venezuelae ATCC 10712] Length=237 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 92/221 (42%), Positives = 117/221 (53%), Gaps = 45/221 (20%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 +A+ HAILVSL E+ SGYELARRF+RSIGYFWTA+HQQIYR L+ ME++ WV A V Q Sbjct 21 VAIEHAILVSLLEKPGSGYELARRFERSIGYFWTASHQQIYRVLKRMESDGWVDARDVPQ 80 Query 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA 120 GRPDKK Y ++D G+A L+ WI +P+ P +S D+AVK+RGA + D AA Sbjct 81 QGRPDKKEYTVADLGQAVLSSWIHQPIEP----------ESIRHDLAVKIRGAAFDDPAA 130 Query 121 LYTQVTALRAERVKSLDTYRGIEKRTFADPSA---------------------------- 152 L +V R + L Y E+R F P A Sbjct 131 LIHEVERHRQAHTERLAHYLAGEERDFTGPDAPGGARDAGTGSPGGPLDDGPDDGPDDGP 190 Query 153 -------LDGAALHQYLVLRGGIRAEESAIDWLDEVAEALQ 186 LD Q++VLRGGI E + WLD+V L Sbjct 191 HDRPGGPLDAGRELQHVVLRGGIAYERMTLAWLDDVLATLH 231 >gi|239985972|ref|ZP_04706636.1| PadR-like family transcriptional regulator [Streptomyces roseosporus NRRL 11379] gi|291442913|ref|ZP_06582303.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291345860|gb|EFE72764.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length=197 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 91/189 (49%), Positives = 109/189 (58%), Gaps = 13/189 (6%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 MAL HAILVSL E+ SGYELARRF+RSIGYFWTATHQQIYR L M + + V Q Sbjct 1 MALDHAILVSLLERPGSGYELARRFERSIGYFWTATHQQIYRVLGRMVTDGLLLVREVEQ 60 Query 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA 120 GRPDKK Y+++ GRA LA W+ +P+ P +S D+AVK+RGA + D AA Sbjct 61 QGRPDKKEYSVTGPGRAALAAWLHKPIEP----------ESLRHDLAVKIRGAAFDDPAA 110 Query 121 LYTQVTALRAERVKSLDTYRGIEKRTFADPSA---LDGAALHQYLVLRGGIRAEESAIDW 177 L +V R L Y E R F P A D Q++VLRGGI E I W Sbjct 111 LIDEVERHRQAHRDRLAHYLAGELRDFTGPDAPAPQDAGQELQHVVLRGGIAYERMTIAW 170 Query 178 LDEVAEALQ 186 LD+V L Sbjct 171 LDDVLATLH 179 >gi|326780908|ref|ZP_08240173.1| transcriptional regulator, PadR-like family [Streptomyces cf. griseus XylebKG-1] gi|326661241|gb|EGE46087.1| transcriptional regulator, PadR-like family [Streptomyces griseus XylebKG-1] Length=188 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 91/189 (49%), Positives = 109/189 (58%), Gaps = 13/189 (6%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 MAL HAILVSL E+ SGYELARRF+RSIGYFWTATHQQIYR L M + + V Q Sbjct 1 MALDHAILVSLLEKPGSGYELARRFERSIGYFWTATHQQIYRVLGRMVADGLLLVREVEQ 60 Query 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA 120 GRPDKK Y+++ GRA LA W+ +P+ P +S D+AVK+RGA + D AA Sbjct 61 QGRPDKKEYSVTGPGRAALAVWLHKPIEP----------ESLRHDLAVKIRGAAFDDPAA 110 Query 121 LYTQVTALRAERVKSLDTYRGIEKRTFADPSA---LDGAALHQYLVLRGGIRAEESAIDW 177 L +V R L Y E R F P A D Q++VLRGGI E I W Sbjct 111 LIDEVERHRQAHRDRLAHYLAGELRDFTGPDAPAPQDAGQELQHVVLRGGIAYERMTIAW 170 Query 178 LDEVAEALQ 186 LD+V L Sbjct 171 LDDVLATLH 179 >gi|182440245|ref|YP_001827964.1| PadR-like family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178468761|dbj|BAG23281.1| putative PadR-like family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length=188 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 91/189 (49%), Positives = 109/189 (58%), Gaps = 13/189 (6%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 MAL HAILVSL E+ SGYELARRF+RSIGYFWTATHQQIYR L M + + V Q Sbjct 1 MALDHAILVSLLEKPGSGYELARRFERSIGYFWTATHQQIYRVLGRMVADGLLLVREVEQ 60 Query 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA 120 GRPDKK Y+++ GRA LA W+ +P+ P +S D+AVK+RGA + D AA Sbjct 61 QGRPDKKEYSVAGPGRAALAAWLHKPIEP----------ESLRHDLAVKIRGAAFDDPAA 110 Query 121 LYTQVTALRAERVKSLDTYRGIEKRTFADPSA---LDGAALHQYLVLRGGIRAEESAIDW 177 L +V R L Y E R F P A D Q++VLRGGI E I W Sbjct 111 LIDEVERHRQAHRDRLAHYLAGELRDFTGPDAPAPQDAGQELQHVVLRGGIAYERMTIAW 170 Query 178 LDEVAEALQ 186 LD+V L Sbjct 171 LDDVLATLH 179 >gi|158334450|ref|YP_001515622.1| PadR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158304691|gb|ABW26308.1| transcriptional regulator, PadR family, putative [Acaryochloris marina MBIC11017] Length=177 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 74/180 (42%), Positives = 103/180 (58%), Gaps = 10/180 (5%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 M+L +AIL +L + A SGYELA+RFD S+G+FW+A+HQQIYR L +E W+ + Q Sbjct 1 MSLSYAILATLTDLACSGYELAKRFDGSVGHFWSASHQQIYRELNRLEERQWITGEVIPQ 60 Query 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA 120 GRPDKK Y +++ G+ E+A+WIA+P +R + +I VKL + Sbjct 61 TGRPDKKCYHLTEMGKVEMAKWIAQPSKSSR----------TKEEILVKLFAGDLVEPEI 110 Query 121 LYTQVTALRAERVKSLDTYRGIEKRTFADPSALDGAALHQYLVLRGGIRAEESAIDWLDE 180 L ++ E + L Y+ IE++ FADP L A QYL LR GIR E I W E Sbjct 111 LLAELRRYHQEHEQQLQIYQQIEQQHFADPEKLSWGAKCQYLTLRQGIRYEIDVIAWCKE 170 >gi|163841291|ref|YP_001625696.1| transcriptional repressor [Renibacterium salmoninarum ATCC 33209] gi|162954767|gb|ABY24282.1| transcriptional repressor [Renibacterium salmoninarum ATCC 33209] Length=187 Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 75/187 (41%), Positives = 110/187 (59%), Gaps = 10/187 (5%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 MAL HA+LVSL E+ +SGYELA RFD+S+G+FW A+HQQIY+ L +E + + + Sbjct 1 MALKHAVLVSLAEKVASGYELANRFDKSLGFFWKASHQQIYQVLAKLEASGEISSEVHPG 60 Query 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA 120 G+PD+KVY +++SG+ L W AEP +P R + A+K+RG +G+ AA Sbjct 61 DGKPDRKVYQLTESGKLALTAWTAEP-TPVEQQRS---------EFAIKVRGMAHGNRAA 110 Query 121 LYTQVTALRAERVKSLDTYRGIEKRTFADPSALDGAALHQYLVLRGGIRAEESAIDWLDE 180 + + R + L+ Y +R F +P L L YLVLRGGIR E+ +DW E Sbjct 111 VIKDIRRQREAYRERLNYYLADAERNFPEPRKLSAEKLPLYLVLRGGIRTEQGYLDWCAE 170 Query 181 VAEALQE 187 + + L + Sbjct 171 MLDLLDQ 177 >gi|309810656|ref|ZP_07704466.1| transcriptional regulator, PadR family [Dermacoccus sp. Ellin185] gi|308435391|gb|EFP59213.1| transcriptional regulator, PadR family [Dermacoccus sp. Ellin185] Length=243 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 76/185 (42%), Positives = 105/185 (57%), Gaps = 10/185 (5%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 M+L HA+LVSL E+ +SGY+L RRFDRS+G+FW+ATHQQIYR L M + V T Sbjct 1 MSLQHALLVSLAEREASGYDLTRRFDRSLGFFWSATHQQIYRVLAKMADAGLVEVRTEAG 60 Query 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA 120 GRPD++V+ I+ +GRAEL W P +++ + AVK+RG +GD A Sbjct 61 EGRPDRRVHTIAPAGRAELLAWTRTPTP----------SETLRSEFAVKVRGMRFGDADA 110 Query 121 LYTQVTALRAERVKSLDTYRGIEKRTFADPSALDGAALHQYLVLRGGIRAEESAIDWLDE 180 + + R E L + R + DPS+L Y VLRGGIR E + ++W DE Sbjct 111 VVADIRRHRDEHAAQLAYFEANCARHYPDPSSLSDEERPTYAVLRGGIRTERAMLEWCDE 170 Query 181 VAEAL 185 + L Sbjct 171 MVALL 175 >gi|312602796|ref|YP_004022641.1| transcriptional repressor PadR [Burkholderia rhizoxinica HKI 454] gi|312170110|emb|CBW77122.1| Transcriptional repressor PadR [Burkholderia rhizoxinica HKI 454] Length=184 Score = 137 bits (345), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 86/188 (46%), Positives = 104/188 (56%), Gaps = 11/188 (5%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 M++ HA+L SL E+ +SGY+LARRFDRSIGYFW ATHQQIYR L M WV A Sbjct 4 MSIQHALLTSLLEKPTSGYDLARRFDRSIGYFWHATHQQIYRELARMATVGWVAAVDDPN 63 Query 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRD-IAVKLRGAGYGDVA 119 KK Y + +GRAEL RWI EPL D + R VKLR A Sbjct 64 DPARRKKCYQVLPTGRAELVRWILEPLDD---------GDRNCRQAFLVKLRAAAVVGPD 114 Query 120 ALYTQVTALRAERVKSLDTYRGIEKRTFADPSALDGAALHQYLVLRGGIRAEESAIDWLD 179 L ++ L + LDTYR IE+R FA P L Q+ VLR GIRAEE+ I+W Sbjct 115 GLGEELARLLEQWQARLDTYRNIEQRDFAAP-VLSTKQRLQHAVLRYGIRAEETWIEWAH 173 Query 180 EVAEALQE 187 +V L+E Sbjct 174 DVVALLRE 181 >gi|186684838|ref|YP_001868034.1| PadR-like family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186467290|gb|ACC83091.1| transcriptional regulator, PadR-like family [Nostoc punctiforme PCC 73102] Length=182 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 65/175 (38%), Positives = 99/175 (57%), Gaps = 10/175 (5%) Query 13 EQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQHGRPDKKVYAIS 72 E SGY+LA+RFD S+G+FW+A+HQQIYR L +E+ W+ + T+LQ GRPDK++Y+++ Sbjct 13 EAPCSGYDLAKRFDGSVGFFWSASHQQIYRELSKLEDQEWISSETILQAGRPDKRLYSVT 72 Query 73 DSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAALYTQVTALRAER 132 D G+ L WIA+P PT P + D+ VK+ + ++ + Sbjct 73 DLGQQHLKEWIAQPCEPT-PIKD---------DLLVKIFAGHIVSNKIILAELEHHQKAH 122 Query 133 VKSLDTYRGIEKRTFADPSALDGAALHQYLVLRGGIRAEESAIDWLDEVAEALQE 187 ++ L TYR +E+ F D L AA QYL L GI E + + W ++ E L + Sbjct 123 LEKLSTYRDLEQHYFNDLQELPEAAKFQYLTLLNGITYETNWLAWCNQAMELLNQ 177 >gi|89900678|ref|YP_523149.1| PadR-like protein family transcriptional regulator [Rhodoferax ferrireducens T118] gi|89345415|gb|ABD69618.1| transcriptional regulator, PadR family [Rhodoferax ferrireducens T118] Length=176 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 78/187 (42%), Positives = 107/187 (58%), Gaps = 12/187 (6%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 M+L HA+L SL E++SSGY+LARRFD+SIGYFW ATHQQIYR L ME W+ +++ Sbjct 1 MSLAHAVLTSLIEKSSSGYDLARRFDKSIGYFWHATHQQIYRELARMEAAGWIESSSAPD 60 Query 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRG-AGYGDVA 119 G+ K+ Y + +GRAELARW EP +P L D + VKLR A G++ Sbjct 61 AGKTRKREYRVLSAGRAELARWACEPSAPM------DLRD----EFMVKLRADAALGEI- 109 Query 120 ALYTQVTALRAERVKSLDTYRGIEKRTFADPSALDGAALHQYLVLRGGIRAEESAIDWLD 179 L ++ A + L YR IE+R F L A +++L+ GI EE +I W Sbjct 110 DLRDELRRRIALHQEKLAHYRAIEQRDFLHGKPLSREARIHHMILKKGILLEEGSIAWGA 169 Query 180 EVAEALQ 186 E+ L+ Sbjct 170 EMLAVLE 176 >gi|311899486|dbj|BAJ31894.1| putative PadR family transcriptional regulator [Kitasatospora setae KM-6054] Length=206 Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 82/180 (46%), Positives = 101/180 (57%), Gaps = 12/180 (6%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 M+LPHAIL +L E+ SSG EL RRFDRSIG+FW+ATHQQIYR L +E VRA+ Sbjct 1 MSLPHAILTALLEKPSSGLELTRRFDRSIGFFWSATHQQIYRELGRLEREGLVRASGP-G 59 Query 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA 120 GR +K Y + GRAELARW A P P +P R L ++LR A + Sbjct 60 AGRGQRKEYEVLADGRAELARWTALPQDP-KPVRDPLL---------LRLRAAAVLGLDG 109 Query 121 LYTQVTALRAERVKSLDTYRGIEKRTFADPSALDGAALHQYLVLRGGIRAEESAIDWLDE 180 L ++ R L Y IE+R F P A G Q+LVLRGGI+ E + WLDE Sbjct 110 LEEELARHRELHRAQLAEYLEIERRDFP-PGAAAGENRLQHLVLRGGIQLESFWLAWLDE 168 >gi|260220418|emb|CBA27935.1| hypothetical protein Csp_A04770 [Curvibacter putative symbiont of Hydra magnipapillata] Length=172 Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 76/180 (43%), Positives = 98/180 (55%), Gaps = 10/180 (5%) Query 7 ILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQHGRPDK 66 +L SL E+ SSGYELARRFD+SIGYFW ATHQQIYR L ME W+ + + G K Sbjct 1 MLTSLIEKPSSGYELARRFDKSIGYFWHATHQQIYRELARMEEKGWIVSDSAPDAGATRK 60 Query 67 KVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAALYTQVT 126 + Y + GRAEL RW +EP +P L D T VK+R + L ++ Sbjct 61 REYKVLPDGRAELVRWTSEPAAPM------DLRDEFT----VKIRADAALNEVDLSDELR 110 Query 127 ALRAERVKSLDTYRGIEKRTFADPSALDGAALHQYLVLRGGIRAEESAIDWLDEVAEALQ 186 A A+ + L YR IE R FA A+ A Q+L+L+ GI EE +I W E L+ Sbjct 111 ARIAQHTERLAHYRAIEARDFARGKAMPRAKRLQHLILKKGIMFEEGSIAWAQEALAVLE 170 >gi|119477854|ref|ZP_01617977.1| hypothetical protein GP2143_01895 [marine gamma proteobacterium HTCC2143] gi|119449015|gb|EAW30256.1| hypothetical protein GP2143_01895 [marine gamma proteobacterium HTCC2143] Length=179 Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 68/185 (37%), Positives = 105/185 (57%), Gaps = 10/185 (5%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 MAL HAI+ +L E+ SGY+LA++FD S+G+FW A+HQQIY+ L+ M W+ TV Q Sbjct 1 MALSHAIMTALLEEDLSGYDLAKKFDMSLGFFWQASHQQIYQELKKMLERGWLSPDTVEQ 60 Query 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA 120 G+P+K +YA++ G+A L W+ +S T+ + S+ D+ VKL G+ D Sbjct 61 AGKPNKILYALTSEGKAALDDWV---VSETK-------SRSAKEDLYVKLYNIGHCDPEP 110 Query 121 LYTQVTALRAERVKSLDTYRGIEKRTFADPSALDGAALHQYLVLRGGIRAEESAIDWLDE 180 L ++ + + + L+ Y I+ R + +P L YL L GIR ++ I+W DE Sbjct 111 LIGEIADRQLQCQRQLELYLKIKDRHYGEPETLAINRKGIYLALSAGIRQQQMHIEWCDE 170 Query 181 VAEAL 185 E L Sbjct 171 ALELL 175 >gi|158335694|ref|YP_001516866.1| PadR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158305935|gb|ABW27552.1| transcriptional regulator, PadR family [Acaryochloris marina MBIC11017] Length=181 Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 75/187 (41%), Positives = 98/187 (53%), Gaps = 13/187 (6%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 M L H IL L E SGY+L++RF+ S+ FW A+ QQIYR L +E WV V Q Sbjct 1 MTLAHTILTVLSEAPHSGYDLSKRFEESVSCFWKASQQQIYRELSKIETQGWVTHELVPQ 60 Query 61 HGRPDKKVYAISDSGRAELARWIAEPLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDVAA 120 G+PDKKVY I++ G+ EL W AEP +PT P R D+ VK+ Y Sbjct 61 QGKPDKKVYQITEMGKQELLNWYAEPSTPT-PIR---------EDLLVKVLAGPYVPRPL 110 Query 121 LYTQVTALRAERVKSLDTYRGIEKR-TFADPSALDGAALHQYLVLRGGIRAEESAIDWLD 179 L QV A +A + L+ Y +EK F ++ A +Y LR GIR E IDW Sbjct 111 LIQQVKARQALHQQQLERY--LEKEACFQQLETVEPALKFRYFTLRRGIRYEREWIDWCQ 168 Query 180 EVAEALQ 186 EV + L+ Sbjct 169 EVIDTLK 175 >gi|237653161|ref|YP_002889475.1| PadR-like family transcriptional regulator [Thauera sp. MZ1T] gi|237624408|gb|ACR01098.1| transcriptional regulator, PadR-like family [Thauera sp. MZ1T] Length=177 Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 79/190 (42%), Positives = 100/190 (53%), Gaps = 16/190 (8%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 M+L HA+L SL EQ SSGYELARRFD+SIG+FW ATHQQIYR L ME W+R+ Sbjct 1 MSLAHALLTSLLEQPSSGYELARRFDKSIGHFWQATHQQIYRELGRMEKAGWIRSDANPD 60 Query 61 HGRPDKKVYAISDSGRAELARWIAE--PLSPTRPGRGSALTDSSTRDIAVKLRGAGYGDV 118 GR K+ Y++ +GR EL RW AE PL R + V+LR Sbjct 61 AGRTRKRSYSVLPTGRDELMRWAAEASPLPELRD------------EFMVRLRADAVTGP 108 Query 119 AALYTQVTALRAERVKSLDTYRGIEKRTF-ADPSALDGAALHQYLVLRGGIRAEESAIDW 177 L ++ RA L YR IE R F A+ +H +L+L+ GI+ E+ I W Sbjct 109 LGLLPELDRRRALHADKLRAYRAIEARDFPAEVEPTRQRRIH-HLILKAGIQYEQGWIAW 167 Query 178 LDEVAEALQE 187 DE L E Sbjct 168 YDEAIGVLGE 177 >gi|90580873|ref|ZP_01236675.1| Putative transcriptional regulator [Vibrio angustum S14] gi|90437944|gb|EAS63133.1| Putative transcriptional regulator [Vibrio angustum S14] Length=187 Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 70/189 (38%), Positives = 101/189 (54%), Gaps = 14/189 (7%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 M+LPH IL L + ++GY++ + F SIGYFW A+HQQ+YR L M N+ V Q Sbjct 1 MSLPHVILTVLSNREATGYDITKEFSHSIGYFWKASHQQVYRELNKMATNDQVTCRLEPQ 60 Query 61 HGRPDKKVYAISDSGRAELARWIAEPL-SPTRPGRGSALTDSSTRD-IAVKLRGAGYGDV 118 G+PD+KVYAI+D+GR L W EP +PT TRD + KL G + Sbjct 61 EGKPDRKVYAITDAGRQALFNWFEEPARNPT------------TRDEFSAKLLVCGVHNS 108 Query 119 AALYTQVTALRAERVKSLDTYRGIEKRTFADPSALDGAALHQYLVLRGGIRAEESAIDWL 178 + Q+ AL E + Y+ +EK F+D ++D L LR G+ ++ IDW Sbjct 109 EPMQKQLAALIDESQTLIGHYKELEKLHFSDYKSMDRQQRLDRLTLRRGLHNRQAWIDWA 168 Query 179 DEVAEALQE 187 +EV L++ Sbjct 169 EEVLVELKD 177 >gi|89075194|ref|ZP_01161625.1| Putative transcriptional regulator [Photobacterium sp. SKA34] gi|89049016|gb|EAR54583.1| Putative transcriptional regulator [Photobacterium sp. SKA34] Length=187 Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 70/189 (38%), Positives = 100/189 (53%), Gaps = 14/189 (7%) Query 1 MALPHAILVSLCEQASSGYELARRFDRSIGYFWTATHQQIYRTLRVMENNNWVRATTVLQ 60 M+LPH IL L + ++GY++ + F SIGYFW A+HQQ+YR L M N+ V Q Sbjct 1 MSLPHVILTVLSNREATGYDITKEFSHSIGYFWKASHQQVYRELNKMATNDQVTCRLEPQ 60 Query 61 HGRPDKKVYAISDSGRAELARWIAEPL-SPTRPGRGSALTDSSTRD-IAVKLRGAGYGDV 118 G+PD+KVYAI+D+GR L W EP +PT TRD + KL G + Sbjct 61 EGKPDRKVYAITDAGRQALFNWFEEPARNPT------------TRDEFSAKLLVCGVHNS 108 Query 119 AALYTQVTALRAERVKSLDTYRGIEKRTFADPSALDGAALHQYLVLRGGIRAEESAIDWL 178 + Q+ AL E + Y+ +EK F D ++D L LR G+ ++ IDW Sbjct 109 EPMQKQLAALIDESQTLIGHYKELEKLHFGDYKSMDRQQRLDRLTLRRGLHNRQAWIDWA 168 Query 179 DEVAEALQE 187 +EV L++ Sbjct 169 EEVLVELKD 177 Lambda K H 0.318 0.132 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 187037746340 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40