BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1189
Length=290
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608329|ref|NP_215705.1| RNA polymerase sigma factor SigI [M... 579 2e-163
gi|289761334|ref|ZP_06520712.1| alternative RNA polymerase sigma... 579 2e-163
gi|340626203|ref|YP_004744655.1| putative alternative RNA polyme... 577 9e-163
gi|121637120|ref|YP_977343.1| RNA polymerase sigma factor SigI [... 553 1e-155
gi|339294179|gb|AEJ46290.1| RNA polymerase sigma factor SigI [My... 516 2e-144
gi|342860116|ref|ZP_08716768.1| RNA polymerase sigma factor SigI... 253 3e-65
gi|254821879|ref|ZP_05226880.1| RNA polymerase sigma factor SigI... 244 1e-62
gi|41406268|ref|NP_959104.1| RNA polymerase sigma factor SigI [M... 235 6e-60
gi|118463107|ref|YP_879457.1| RNA polymerase sigma factor SigI [... 234 2e-59
gi|254773221|ref|ZP_05214737.1| RNA polymerase sigma factor SigI... 233 3e-59
gi|296166997|ref|ZP_06849410.1| RNA polymerase sigma-70 factor [... 227 1e-57
gi|169630082|ref|YP_001703731.1| RNA polymerase sigma factor Sig... 221 1e-55
gi|325675187|ref|ZP_08154872.1| ECF subfamily RNA polymerase sig... 184 2e-44
gi|312138042|ref|YP_004005378.1| sigma-70 factor [Rhodococcus eq... 182 4e-44
gi|271968354|ref|YP_003342550.1| ECF subfamily RNA polymerase si... 182 5e-44
gi|284042744|ref|YP_003393084.1| RNA polymerase, sigma-24 subuni... 170 3e-40
gi|297161730|gb|ADI11442.1| ECF subfamily RNA polymerase sigma f... 168 8e-40
gi|256391672|ref|YP_003113236.1| RNA polymerase, sigma-24 subuni... 164 1e-38
gi|111017938|ref|YP_700910.1| sigma factor, includes region 2 [R... 162 5e-38
gi|345011533|ref|YP_004813887.1| ECF subfamily RNA polymerase si... 160 2e-37
gi|337763893|emb|CCB72603.1| putative RNA polymerase ECF-subfami... 160 3e-37
gi|297559640|ref|YP_003678614.1| ECF subfamily RNA polymerase si... 160 3e-37
gi|337763736|emb|CCB72446.1| putative RNA polymerase ECF-subfami... 159 6e-37
gi|269929065|ref|YP_003321386.1| RNA polymerase, sigma-24 subuni... 158 7e-37
gi|241666621|ref|YP_002984705.1| RNA polymerase, sigma-24 subuni... 158 8e-37
gi|54022462|ref|YP_116704.1| putative sigma factor [Nocardia far... 158 1e-36
gi|291300793|ref|YP_003512071.1| ECF subfamily RNA polymerase si... 157 1e-36
gi|291435486|ref|ZP_06574876.1| RNA polymerase sigma factor [Str... 157 1e-36
gi|190895555|ref|YP_001985847.1| RNA polymerase sigma factor pro... 157 1e-36
gi|327190872|gb|EGE57933.1| putative RNA polymerase sigma factor... 157 2e-36
gi|29833966|ref|NP_828600.1| ECF subfamily RNA polymerase sigma ... 157 2e-36
gi|116255619|ref|YP_771452.1| putative alternative RNA polymeras... 156 3e-36
gi|117164605|emb|CAJ88151.1| putative sigma factor [Streptomyces... 156 4e-36
gi|54023594|ref|YP_117836.1| putative sigma factor [Nocardia far... 155 6e-36
gi|260905992|ref|ZP_05914314.1| RNA polymerase, sigma-24 subunit... 155 8e-36
gi|284028234|ref|YP_003378165.1| ECF subfamily RNA polymerase si... 155 8e-36
gi|260905994|ref|ZP_05914316.1| putative sigma factor [Brevibact... 155 9e-36
gi|209546187|ref|YP_002278077.1| RNA polymerase, sigma-24 subuni... 154 1e-35
gi|134098509|ref|YP_001104170.1| putative RNA polymerase sigma f... 154 1e-35
gi|111223115|ref|YP_713909.1| RNA polymerase ECF-subfamily sigma... 154 2e-35
gi|302535941|ref|ZP_07288283.1| sigma factor [Streptomyces sp. C... 154 2e-35
gi|254381494|ref|ZP_04996858.1| RNA polymerase ECF-subfamily sig... 153 2e-35
gi|312196886|ref|YP_004016947.1| RNA polymerase, sigma-24 subuni... 153 2e-35
gi|284046577|ref|YP_003396917.1| RNA polymerase, sigma-24 subuni... 153 3e-35
gi|302547996|ref|ZP_07300338.1| RNA polymerase sigma-70 factor, ... 152 5e-35
gi|329935018|ref|ZP_08285032.1| RNA polymerase sigma-70 factor [... 152 5e-35
gi|302562298|ref|ZP_07314640.1| RNA polymerase sigma-70 factor [... 152 6e-35
gi|328883906|emb|CCA57145.1| putative RNA polymerase sigma facto... 152 7e-35
gi|271968368|ref|YP_003342564.1| ECF subfamily RNA polymerase si... 152 8e-35
gi|320012102|gb|ADW06952.1| RNA polymerase, sigma-24 subunit, EC... 152 9e-35
>gi|15608329|ref|NP_215705.1| RNA polymerase sigma factor SigI [Mycobacterium tuberculosis
H37Rv]
gi|15840632|ref|NP_335669.1| RNA polymerase sigma factor SigI [Mycobacterium tuberculosis
CDC1551]
gi|31792382|ref|NP_854875.1| RNA polymerase sigma factor SigI [Mycobacterium bovis AF2122/97]
72 more sequence titles
Length=290
Score = 579 bits (1493), Expect = 2e-163, Method: Compositional matrix adjust.
Identities = 290/290 (100%), Positives = 290/290 (100%), Gaps = 0/290 (0%)
Query 1 MSQHDPVSAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIV 60
MSQHDPVSAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIV
Sbjct 1 MSQHDPVSAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIV 60
Query 61 VTSRLCLDHIKSASTRRERPQDIAAWHDGDASVSSVDPADRVTLDDEVRLALLIMLERLG 120
VTSRLCLDHIKSASTRRERPQDIAAWHDGDASVSSVDPADRVTLDDEVRLALLIMLERLG
Sbjct 61 VTSRLCLDHIKSASTRRERPQDIAAWHDGDASVSSVDPADRVTLDDEVRLALLIMLERLG 120
Query 121 PAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQHRVVT 180
PAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQHRVVT
Sbjct 121 PAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQHRVVT 180
Query 181 RAFIEACSNGDLDTLLEVLDPGVAGEIDARKGVVVVGADRVGPTILRHWSHPATVLVAQP 240
RAFIEACSNGDLDTLLEVLDPGVAGEIDARKGVVVVGADRVGPTILRHWSHPATVLVAQP
Sbjct 181 RAFIEACSNGDLDTLLEVLDPGVAGEIDARKGVVVVGADRVGPTILRHWSHPATVLVAQP 240
Query 241 VCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTLDPLRAELGGG 290
VCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTLDPLRAELGGG
Sbjct 241 VCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTLDPLRAELGGG 290
>gi|289761334|ref|ZP_06520712.1| alternative RNA polymerase sigma factor sigI [Mycobacterium tuberculosis
GM 1503]
gi|289708840|gb|EFD72856.1| alternative RNA polymerase sigma factor sigI [Mycobacterium tuberculosis
GM 1503]
Length=290
Score = 579 bits (1492), Expect = 2e-163, Method: Compositional matrix adjust.
Identities = 289/290 (99%), Positives = 290/290 (100%), Gaps = 0/290 (0%)
Query 1 MSQHDPVSAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIV 60
MSQHDPVSAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIV
Sbjct 1 MSQHDPVSAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIV 60
Query 61 VTSRLCLDHIKSASTRRERPQDIAAWHDGDASVSSVDPADRVTLDDEVRLALLIMLERLG 120
VTSRLCLDHIKSASTRRERPQDIAAWHDGDASVSSVDPADRVTLDDEVRLALLIMLERLG
Sbjct 61 VTSRLCLDHIKSASTRRERPQDIAAWHDGDASVSSVDPADRVTLDDEVRLALLIMLERLG 120
Query 121 PAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQHRVVT 180
PAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQHR+VT
Sbjct 121 PAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQHRIVT 180
Query 181 RAFIEACSNGDLDTLLEVLDPGVAGEIDARKGVVVVGADRVGPTILRHWSHPATVLVAQP 240
RAFIEACSNGDLDTLLEVLDPGVAGEIDARKGVVVVGADRVGPTILRHWSHPATVLVAQP
Sbjct 181 RAFIEACSNGDLDTLLEVLDPGVAGEIDARKGVVVVGADRVGPTILRHWSHPATVLVAQP 240
Query 241 VCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTLDPLRAELGGG 290
VCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTLDPLRAELGGG
Sbjct 241 VCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTLDPLRAELGGG 290
>gi|340626203|ref|YP_004744655.1| putative alternative RNA polymerase sigma factor SIGI [Mycobacterium
canettii CIPT 140010059]
gi|340004393|emb|CCC43536.1| putative alternative RNA polymerase sigma factor SIGI [Mycobacterium
canettii CIPT 140010059]
Length=290
Score = 577 bits (1486), Expect = 9e-163, Method: Compositional matrix adjust.
Identities = 289/290 (99%), Positives = 289/290 (99%), Gaps = 0/290 (0%)
Query 1 MSQHDPVSAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIV 60
MSQHDPVSAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIV
Sbjct 1 MSQHDPVSAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIV 60
Query 61 VTSRLCLDHIKSASTRRERPQDIAAWHDGDASVSSVDPADRVTLDDEVRLALLIMLERLG 120
VTSRLCLDHIKSASTRRERPQDIAAWHDGDASVSSVDPADRVTLDDEVRLALLIMLERLG
Sbjct 61 VTSRLCLDHIKSASTRRERPQDIAAWHDGDASVSSVDPADRVTLDDEVRLALLIMLERLG 120
Query 121 PAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQHRVVT 180
PAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQHRVVT
Sbjct 121 PAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQHRVVT 180
Query 181 RAFIEACSNGDLDTLLEVLDPGVAGEIDARKGVVVVGADRVGPTILRHWSHPATVLVAQP 240
RAFIEACSNGDLDTLLEVLDPGVAGEIDARKGVVVVGADRVGPTILRHW HPATVLVAQP
Sbjct 181 RAFIEACSNGDLDTLLEVLDPGVAGEIDARKGVVVVGADRVGPTILRHWCHPATVLVAQP 240
Query 241 VCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTLDPLRAELGGG 290
VCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTLDPLRAELGGG
Sbjct 241 VCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTLDPLRAELGGG 290
>gi|121637120|ref|YP_977343.1| RNA polymerase sigma factor SigI [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|121492767|emb|CAL71238.1| Possible alternative RNA polymerase sigma factor sigI' [Mycobacterium
bovis BCG str. Pasteur 1173P2]
Length=401
Score = 553 bits (1425), Expect = 1e-155, Method: Compositional matrix adjust.
Identities = 279/281 (99%), Positives = 279/281 (99%), Gaps = 0/281 (0%)
Query 1 MSQHDPVSAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIV 60
MSQHDPVSAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIV
Sbjct 1 MSQHDPVSAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIV 60
Query 61 VTSRLCLDHIKSASTRRERPQDIAAWHDGDASVSSVDPADRVTLDDEVRLALLIMLERLG 120
VTSRLCLDHIKSASTRRERPQDIAAWHDGDASVSSVDPADRVTLDDEVRLALLIMLERLG
Sbjct 61 VTSRLCLDHIKSASTRRERPQDIAAWHDGDASVSSVDPADRVTLDDEVRLALLIMLERLG 120
Query 121 PAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQHRVVT 180
PAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQHRVVT
Sbjct 121 PAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQHRVVT 180
Query 181 RAFIEACSNGDLDTLLEVLDPGVAGEIDARKGVVVVGADRVGPTILRHWSHPATVLVAQP 240
RAFIEACSNGDLDTLLEVLDPGVAGEIDARKGVVVVGADRVGPTILRHWSHPATVLVAQP
Sbjct 181 RAFIEACSNGDLDTLLEVLDPGVAGEIDARKGVVVVGADRVGPTILRHWSHPATVLVAQP 240
Query 241 VCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTLD 281
VCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQP LD
Sbjct 241 VCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPPALD 281
>gi|339294179|gb|AEJ46290.1| RNA polymerase sigma factor SigI [Mycobacterium tuberculosis
CCDC5079]
Length=260
Score = 516 bits (1329), Expect = 2e-144, Method: Compositional matrix adjust.
Identities = 259/260 (99%), Positives = 260/260 (100%), Gaps = 0/260 (0%)
Query 31 VAEDMVQEAFSRLLRAPVGDIDDERGWLIVVTSRLCLDHIKSASTRRERPQDIAAWHDGD 90
+AEDMVQEAFSRLLRAPVGDIDDERGWLIVVTSRLCLDHIKSASTRRERPQDIAAWHDGD
Sbjct 1 MAEDMVQEAFSRLLRAPVGDIDDERGWLIVVTSRLCLDHIKSASTRRERPQDIAAWHDGD 60
Query 91 ASVSSVDPADRVTLDDEVRLALLIMLERLGPAERVVFVLHEIFGLPYQQIATTIGSQAST 150
ASVSSVDPADRVTLDDEVRLALLIMLERLGPAERVVFVLHEIFGLPYQQIATTIGSQAST
Sbjct 61 ASVSSVDPADRVTLDDEVRLALLIMLERLGPAERVVFVLHEIFGLPYQQIATTIGSQAST 120
Query 151 CRQLAHRARRKINESRIAASVEPAQHRVVTRAFIEACSNGDLDTLLEVLDPGVAGEIDAR 210
CRQLAHRARRKINESRIAASVEPAQHRVVTRAFIEACSNGDLDTLLEVLDPGVAGEIDAR
Sbjct 121 CRQLAHRARRKINESRIAASVEPAQHRVVTRAFIEACSNGDLDTLLEVLDPGVAGEIDAR 180
Query 211 KGVVVVGADRVGPTILRHWSHPATVLVAQPVCGQPAVLAFVNRALAGVLALSIEAGKITK 270
KGVVVVGADRVGPTILRHWSHPATVLVAQPVCGQPAVLAFVNRALAGVLALSIEAGKITK
Sbjct 181 KGVVVVGADRVGPTILRHWSHPATVLVAQPVCGQPAVLAFVNRALAGVLALSIEAGKITK 240
Query 271 IHVLVQPSTLDPLRAELGGG 290
IHVLVQPSTLDPLRAELGGG
Sbjct 241 IHVLVQPSTLDPLRAELGGG 260
>gi|342860116|ref|ZP_08716768.1| RNA polymerase sigma factor SigI [Mycobacterium colombiense CECT
3035]
gi|342132494|gb|EGT85723.1| RNA polymerase sigma factor SigI [Mycobacterium colombiense CECT
3035]
Length=285
Score = 253 bits (645), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 143/284 (51%), Positives = 179/284 (64%), Gaps = 14/284 (4%)
Query 2 SQHDPVSAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIVV 61
S D VS AWR HR YLV+LA++M+GDIG AED+ QEAF RL RA G+I+D RGWL VV
Sbjct 6 SASDQVSEAWRRHRPYLVNLAYQMLGDIGEAEDIAQEAFLRLSRADAGEIEDTRGWLTVV 65
Query 62 TSRLCLDHIKSASTRRERPQDIAAWHDGDASVSSVDPADRVTLDDEVRLALLIMLERLGP 121
SRLCLD ++SA R ERP D+ + + VDPADRVTLDDE+R ALL +L RL P
Sbjct 66 ASRLCLDQVRSARARYERPGDV----EDQPAPRRVDPADRVTLDDEIRTALLEVLRRLSP 121
Query 122 AERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIA-ASVEPAQHRVVT 180
ERV FVLH++FG+P++ IA T+G TCRQLA RAR K ++ A V P +H++VT
Sbjct 122 GERVAFVLHDVFGVPFESIAQTVGRPVGTCRQLARRARSKFEAAQPKLADVAPPEHQLVT 181
Query 181 RAFIEACSNGDLDTLLEVLDPGVAG-----EIDARKGVVVVGADRVGPTILRH-WSHPAT 234
FI AC+NGDL L VLDP V G A + G D V +LR+ W P
Sbjct 182 EKFIAACANGDLQALAAVLDPTVWGVGTILADPAPPPQINHGPDAVATNLLRYLW--PDV 239
Query 235 VLVAQPVCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPS 278
LV+ PV G P +LAF R L V+ L+I ++ KI + PS
Sbjct 240 TLVSGPV-GAPVLLAFSERRLFAVIVLTIRESRVCKIEAIADPS 282
>gi|254821879|ref|ZP_05226880.1| RNA polymerase sigma factor SigI [Mycobacterium intracellulare
ATCC 13950]
Length=292
Score = 244 bits (623), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 143/284 (51%), Positives = 178/284 (63%), Gaps = 14/284 (4%)
Query 2 SQHDPVSAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIVV 61
S D V+ AWR HR YLV+LA++M+GDIG AED+ QEAF RL RA VGDI D RGWL VV
Sbjct 6 STGDQVAEAWRRHRPYLVNLAYQMLGDIGDAEDVAQEAFLRLSRAEVGDIKDVRGWLTVV 65
Query 62 TSRLCLDHIKSASTRRERPQDIAAWHDGDASVSSVDPADRVTLDDEVRLALLIMLERLGP 121
SRLCLD ++SA R ERP D+ + + DPADR+TLDDE+R ALL +L RL P
Sbjct 66 ASRLCLDQVRSARARYERPGDV----EERPAPRRSDPADRITLDDEIRSALLEVLRRLSP 121
Query 122 AERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAAS-VEPAQHRVVT 180
ERV FVLH++FG+P+ IA T+G TCRQLA RAR K ++ + V A+H++VT
Sbjct 122 GERVSFVLHDVFGVPFDSIAETVGRPVGTCRQLARRARAKFVAAQPNMNDVAVAEHQLVT 181
Query 181 RAFIEACSNGDLDTLLEVLDPGVAG-----EIDARKGVVVVGADRVGPTILRH-WSHPAT 234
FI AC+NGDL L VLDP V G A V G D V +LR+ W P
Sbjct 182 EKFITACANGDLAALAAVLDPTVWGVGTILADPAPPPQVNHGPDAVATNLLRYLW--PDV 239
Query 235 VLVAQPVCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPS 278
LV PV G P +LAF +R L V+ L+I ++TKI + PS
Sbjct 240 TLVGGPV-GAPVLLAFSDRRLFAVIVLTIRGARVTKIEAIADPS 282
>gi|41406268|ref|NP_959104.1| RNA polymerase sigma factor SigI [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41394616|gb|AAS02487.1| SigI [Mycobacterium avium subsp. paratuberculosis K-10]
gi|336457503|gb|EGO36510.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium avium
subsp. paratuberculosis S397]
Length=285
Score = 235 bits (599), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 141/284 (50%), Positives = 174/284 (62%), Gaps = 16/284 (5%)
Query 2 SQHDPVSAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIVV 61
S D V+ AWR HR YLV+LA++M+GDIG AED+ QEAF RL A GDIDD RGWL VV
Sbjct 6 SADDQVAEAWRRHRPYLVNLAYQMLGDIGDAEDVAQEAFLRLSAA--GDIDDVRGWLTVV 63
Query 62 TSRLCLDHIKSASTRRERPQDIAAWHDGDASVSSVDPADRVTLDDEVRLALLIMLERLGP 121
SRLCLD ++SA R ERP D+ + DPADR+TLDDEVR ALL +L RL P
Sbjct 64 ASRLCLDQLRSARARHERPGDVGE----QPAPPRFDPADRITLDDEVRTALLEVLRRLSP 119
Query 122 AERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIA-ASVEPAQHRVVT 180
ERV FVLH++FG+P++ IA T+G TCRQLA RAR K ++ +V A+H++VT
Sbjct 120 GERVSFVLHDVFGVPFEAIAQTVGRPVGTCRQLARRARAKFVAAQPKLNTVGAAEHQLVT 179
Query 181 RAFIEACSNGDLDTLLEVLDPGVAG-----EIDARKGVVVVGADRVGPTILRH-WSHPAT 234
FI AC+NGDL L VLDP V G A V G D V +LR+ W P
Sbjct 180 EKFITACANGDLAGLAAVLDPTVWGVGTVLADPAPPPQVNHGPDAVATNLLRYLW--PDV 237
Query 235 VLVAQPVCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPS 278
LV P G P +LAF R L V+ LSI ++ KI + P+
Sbjct 238 TLVGGP-AGAPVLLAFSRRRLFAVIVLSIRDARVVKIEAIADPA 280
>gi|118463107|ref|YP_879457.1| RNA polymerase sigma factor SigI [Mycobacterium avium 104]
gi|118164394|gb|ABK65291.1| RNA polymerase sigma-70 factor [Mycobacterium avium 104]
Length=285
Score = 234 bits (596), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 141/284 (50%), Positives = 173/284 (61%), Gaps = 16/284 (5%)
Query 2 SQHDPVSAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIVV 61
S D V+ AWR HR YLV+LA++M+GDIG AED+ QEAF RL A GDIDD RGWL VV
Sbjct 6 SADDQVAEAWRRHRPYLVNLAYQMLGDIGDAEDVAQEAFLRLSAA--GDIDDVRGWLTVV 63
Query 62 TSRLCLDHIKSASTRRERPQDIAAWHDGDASVSSVDPADRVTLDDEVRLALLIMLERLGP 121
SRLCLD ++SA R ERP D+ + DPADR+TLDDEVR ALL +L RL P
Sbjct 64 ASRLCLDQLRSARARHERPGDVGE----QPAPPRFDPADRITLDDEVRTALLEVLRRLSP 119
Query 122 AERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIA-ASVEPAQHRVVT 180
ERV FVLH++FG+P++ IA T+G TCRQLA RAR K ++ +V A+H+ VT
Sbjct 120 GERVSFVLHDVFGVPFEAIAQTVGRPVGTCRQLARRARAKFVAAQPKLNTVGAAEHQRVT 179
Query 181 RAFIEACSNGDLDTLLEVLDPGVAG-----EIDARKGVVVVGADRVGPTILRH-WSHPAT 234
FI AC+NGDL L VLDP V G A V G D V +LR+ W P
Sbjct 180 EKFITACANGDLAGLAAVLDPTVWGVGTVLADPAPPPQVNHGPDAVATNLLRYLW--PDV 237
Query 235 VLVAQPVCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPS 278
LV P G P +LAF R L V+ LSI ++ KI + P+
Sbjct 238 TLVGGP-AGAPVLLAFSRRRLFAVIVLSIRDARVVKIEAIADPA 280
>gi|254773221|ref|ZP_05214737.1| RNA polymerase sigma factor SigI [Mycobacterium avium subsp.
avium ATCC 25291]
Length=285
Score = 233 bits (594), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 141/284 (50%), Positives = 173/284 (61%), Gaps = 16/284 (5%)
Query 2 SQHDPVSAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIVV 61
S D V+ AWR HR YLV+LA++M+GDIG AED+ QEAF RL A GDIDD RGWL VV
Sbjct 6 SADDQVAKAWRRHRPYLVNLAYQMLGDIGDAEDVAQEAFLRLSAA--GDIDDVRGWLTVV 63
Query 62 TSRLCLDHIKSASTRRERPQDIAAWHDGDASVSSVDPADRVTLDDEVRLALLIMLERLGP 121
SRLCLD ++SA R ERP D+ + DPADR+TLDDEVR ALL +L RL P
Sbjct 64 ASRLCLDQLRSARARHERPGDVGE----QPAPPRFDPADRITLDDEVRTALLEVLRRLSP 119
Query 122 AERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIA-ASVEPAQHRVVT 180
ERV FVLH++FG+P++ IA T+G TCRQLA RAR K ++ +V A+H+ VT
Sbjct 120 GERVSFVLHDVFGVPFEAIAHTVGRPVGTCRQLARRARAKFVAAQPKLNAVGAAEHQRVT 179
Query 181 RAFIEACSNGDLDTLLEVLDPGVAG-----EIDARKGVVVVGADRVGPTILRH-WSHPAT 234
FI AC+NGDL L VLDP V G A V G D V +LR+ W P
Sbjct 180 EKFITACANGDLAGLAAVLDPTVWGVGTVLADPAPPPQVNHGPDAVATNLLRYLW--PDV 237
Query 235 VLVAQPVCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPS 278
LV P G P +LAF R L V+ LSI ++ KI + P+
Sbjct 238 TLVGGP-AGAPVLLAFSRRRLFAVIVLSIRDARVVKIEAIADPA 280
>gi|296166997|ref|ZP_06849410.1| RNA polymerase sigma-70 factor [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295897627|gb|EFG77220.1| RNA polymerase sigma-70 factor [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=292
Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 134/285 (48%), Positives = 175/285 (62%), Gaps = 14/285 (4%)
Query 1 MSQHDPVSAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIV 60
S + V+ AWR HR YLV+LA++M+GD+G AED+ QEAF R R + I+D RGWL V
Sbjct 5 QSGSEQVAEAWRRHRPYLVNLAYQMLGDVGDAEDVAQEAFLRFSRTEIERIEDVRGWLTV 64
Query 61 VTSRLCLDHIKSASTRRERPQDIAAWHDGDASVSSVDPADRVTLDDEVRLALLIMLERLG 120
V SRLCLD ++SA R ERP ++ + A S DPADRVTLDDEVR ALL +L RL
Sbjct 65 VASRLCLDQVRSARVRYERPGEV---QERPAPRRS-DPADRVTLDDEVRTALLEVLRRLS 120
Query 121 PAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAAS-VEPAQHRVV 179
P ERV FVLH++FG+P++ IA T+G TCRQLA RAR K ++ + V A+H++V
Sbjct 121 PGERVAFVLHDVFGVPFESIAETVGRPEGTCRQLARRARAKFVAAQPKTNEVASAEHQLV 180
Query 180 TRAFIEACSNGDLDTLLEVLDPGVAG-----EIDARKGVVVVGADRVGPTILRH-WSHPA 233
T FI AC+NGD+ L+ VLDP V G A + G V +LR+ W P
Sbjct 181 TEKFITACANGDIAGLVAVLDPTVWGVGTILADPAPPPQINHGPQAVATNLLRYLW--PD 238
Query 234 TVLVAQPVCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPS 278
LV+ P G PA+LAF R L V+ L+I +I K+ + S
Sbjct 239 VTLVSGP-AGGPALLAFTGRRLFAVIVLTIRGSRIAKLEAIADAS 282
>gi|169630082|ref|YP_001703731.1| RNA polymerase sigma factor SigI [Mycobacterium abscessus ATCC
19977]
gi|169242049|emb|CAM63077.1| Possible alternative RNA polymerase SigI [Mycobacterium abscessus]
Length=292
Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 133/293 (46%), Positives = 174/293 (60%), Gaps = 25/293 (8%)
Query 2 SQHDP-VSAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIV 60
S HD V+AAWR H YLV+LA++M+GDIG AED VQEAF RL RA +ID+ R WL V
Sbjct 5 STHDALVTAAWREHYPYLVNLAYQMLGDIGDAEDAVQEAFVRLARAEETEIDEPRAWLSV 64
Query 61 VTSRLCLDHIKSASTRRERPQDIAAWHDGDASV---SSVDPADRVTLDDEVRLALLIMLE 117
V RLCLD ++SA RRER +A+ + A + + DPADRVTLDDEVR ALL +L
Sbjct 65 VVGRLCLDQLRSARMRRER-TGVASVVESAAPLHVPAVTDPADRVTLDDEVRGALLEVLR 123
Query 118 RLGPAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAAS-VEPAQH 176
L P ERV FVLH++F +P+++IA+T+G TCRQLA RAR + +S ++ V A+H
Sbjct 124 SLSPGERVAFVLHDVFAVPFEEIASTVGRPVGTCRQLARRARTRFQQSAARSTDVTGAEH 183
Query 177 RVVTRAFIEACSNGDLDTLLEVLDPGVAGEIDARKGVVVVGADRVGP-----------TI 225
+ + F+ AC+ GDL L+ VLDPGV GV + D P T
Sbjct 184 QQLIEKFVTACAQGDLTGLMAVLDPGV-------WGVGTILGDPAPPPQVNRGRTDVATN 236
Query 226 LRHWSHPATVLVAQPVCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPS 278
L + P LV P GQP +LAF R L V+ L++ G + KI P+
Sbjct 237 LLVYLGPGATLVGGPF-GQPVLLAFTQRRLFAVVTLTVREGLVLKIEATADPA 288
>gi|325675187|ref|ZP_08154872.1| ECF subfamily RNA polymerase sigma-24 factor [Rhodococcus equi
ATCC 33707]
gi|325553893|gb|EGD23570.1| ECF subfamily RNA polymerase sigma-24 factor [Rhodococcus equi
ATCC 33707]
Length=287
Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 113/282 (41%), Positives = 165/282 (59%), Gaps = 11/282 (3%)
Query 7 VSAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIVVTSRLC 66
V++ + A R LV +A+ ++G + AED+VQEA+ RL R+ + +IDD GWL+ TSRL
Sbjct 3 VASEFDALRPRLVGVAYGLLGSVTEAEDVVQEAWIRLQRSNLDEIDDLTGWLVTTTSRLA 62
Query 67 LDHIKSASTRRERPQDIAAWHDGDASVSSVDPADRVTLDDEVRLALLIMLERLGPAERVV 126
LD ++SA +RRE + W + ++ DPAD V+L D + A+L++LE L PAER
Sbjct 63 LDVLRSARSRRE--SYVGPWLP-EPVETAADPADAVSLADSISWAMLVVLETLAPAERAA 119
Query 127 FVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQHRVVTRAFIEA 186
FVLH++FGL + +I T +G + CR+LA RAR I+ + +++P HR V AF EA
Sbjct 120 FVLHDLFGLSFTEIGTALGRNPAACRKLASRARDHIDSRKPRFTIDPTVHRSVVDAFAEA 179
Query 187 CSNGDLDTLLEVLDPGVAGEIDARKGVV------VVGADRVGPTILRHWSH-PATVLVAQ 239
++GDL+ LL VLDP D G+V VVGA+ + + + P + A
Sbjct 180 ATSGDLEGLLRVLDPNAVLTADG-GGIVRAALEPVVGAEAIAAFLSGIAAQGPHKTMRAT 238
Query 240 PVCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTLD 281
V PA+L FV AL GV+AL I G +T I + P L+
Sbjct 239 VVNHNPALLVFVGDALDGVVALGITEGLVTSIDFVRNPQKLN 280
>gi|312138042|ref|YP_004005378.1| sigma-70 factor [Rhodococcus equi 103S]
gi|311887381|emb|CBH46693.1| putative sigma-70 factor [Rhodococcus equi 103S]
Length=287
Score = 182 bits (463), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 112/282 (40%), Positives = 165/282 (59%), Gaps = 11/282 (3%)
Query 7 VSAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIVVTSRLC 66
V++ + A R LV +A+ ++G + AED+VQEA+ RL R+ + +IDD GWL+ TSRL
Sbjct 3 VASEFDALRPRLVGVAYGLLGSVTEAEDVVQEAWIRLQRSNLDEIDDLTGWLVTTTSRLA 62
Query 67 LDHIKSASTRRERPQDIAAWHDGDASVSSVDPADRVTLDDEVRLALLIMLERLGPAERVV 126
LD ++SA +RRE + W + ++ DPAD V+L D + A+L++LE L PAER
Sbjct 63 LDVLRSARSRRE--SYVGPWLP-EPVETAADPADAVSLADSISWAMLVVLETLAPAERAA 119
Query 127 FVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQHRVVTRAFIEA 186
FVLH++FGL + +I T +G + CR+LA RAR I+ + +++P HR V AF EA
Sbjct 120 FVLHDLFGLSFTEIGTALGRNPAACRKLASRARDHIDSRKPRFTIDPTVHRSVVDAFAEA 179
Query 187 CSNGDLDTLLEVLDPGVAGEIDARKGVV------VVGADRVGPTILRHWSH-PATVLVAQ 239
++GDL+ LL VLDP D G+V V+GA+ + + + P + A
Sbjct 180 ATSGDLEGLLRVLDPNAVLTADG-GGIVRAALEPVLGAEAIAAFLSGIAAQGPHKTMRAT 238
Query 240 PVCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTLD 281
V PA+L FV AL GV+AL I G +T I + P L+
Sbjct 239 VVNHNPALLVFVGDALDGVVALGITEGLVTSIDFVRNPQKLN 280
>gi|271968354|ref|YP_003342550.1| ECF subfamily RNA polymerase sigma-24 subunit [Streptosporangium
roseum DSM 43021]
gi|270511529|gb|ACZ89807.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Streptosporangium
roseum DSM 43021]
Length=300
Score = 182 bits (462), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 113/292 (39%), Positives = 170/292 (59%), Gaps = 12/292 (4%)
Query 1 MSQHDPVSAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIV 60
++ + ++ + A R LV +A+ ++G + AED+VQ+A+ RL RA +I D GWL+V
Sbjct 13 VNSDEDLATEFDAIRPRLVGVAYGLLGSLDEAEDVVQDAWLRLGRADRAEIQDVTGWLVV 72
Query 61 VTSRLCLDHIKSASTRRERPQDIAAWHDGDASVSSVDPADRVTLDDEVRLALLIMLERLG 120
SRL LD ++SA RRE + + W + V+ DPADRVTL + + +A+L++LE L
Sbjct 73 TVSRLALDVLRSARVRRE--EYVGPWLP-EPVVTEADPADRVTLAESMSMAMLVVLESLS 129
Query 121 PAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQHRVVT 180
PAER FVLH++FGLP++++A +G + CRQLA RAR+ + V+ +HR V
Sbjct 130 PAERTAFVLHDVFGLPFEEVAQAVGRSPAACRQLAARARKHVAARAPRFEVDADEHRRVV 189
Query 181 RAFIEACSNGDLDTLLEVLDPGVAGEIDARKGVV------VVGADRVGPTI--LRHWSHP 232
AF A + D+D LL +LDP V D G+V V GA RV I +
Sbjct 190 EAFARASTGRDIDALLALLDPDVVLRSDG-GGLVTAARRPVRGAGRVARFIAGVAERFGA 248
Query 233 ATVLVAQPVCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTLDPLR 284
+ V G+P +L F + AL+GV AL++ G+IT+IH++V P L +R
Sbjct 249 GSRFTPIMVNGRPGLLRFRDGALSGVYALTVAGGRITEIHIVVNPEKLRSVR 300
>gi|284042744|ref|YP_003393084.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Conexibacter
woesei DSM 14684]
gi|283946965|gb|ADB49709.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Conexibacter
woesei DSM 14684]
Length=305
Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 119/291 (41%), Positives = 162/291 (56%), Gaps = 19/291 (6%)
Query 4 HDPVSAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIVVTS 63
+ ++AA+ R YL LA+ +G A+D+VQEA+ RL R V I D RGWL V
Sbjct 6 EEELAAAFEDQRPYLRRLAYGTLGSFAEADDVVQEAWLRLQRTDVEPIRDLRGWLTTVVG 65
Query 64 RLCLDHIKSASTRRERPQDIAAWHDGD--ASVSSVDPADRVTLDDEVRLALLIMLERLGP 121
RL LD + SA RRER + W V++ DPADRVTLD++V ALL++LERL P
Sbjct 66 RLALDALGSARNRRERY--VGPWLPEPLVEDVAAEDPADRVTLDEQVTTALLVVLERLSP 123
Query 122 AERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINES--RIAASVEPAQHRVV 179
AER FVLH++FGL + ++A +G + RQLA RARR +++ R AS E QH +
Sbjct 124 AERTAFVLHDVFGLSFAEVAEVVGRSPAAVRQLAARARRHVDDGTPRFPASRE--QHTRI 181
Query 180 TRAFIEACSNGDLDTLLEVLDPGVAGEIDARKGVVVV-----GADRVGPTILRHWSHPAT 234
AF A GD+D LL VLDPGV D VV V GA+RV T++ +
Sbjct 182 VAAFAVAWQAGDVDALLAVLDPGVTFRSDGGGNVVAVSRPVDGAERVARTLVALATANVR 241
Query 235 VLVA-----QPVCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTL 280
VA V G P +L + + GV++L+++ G+I I V+ P L
Sbjct 242 RGVAVRGGIVDVNGLPGLLVEEDH-VRGVVSLTVDDGRIVAIDVVRNPEKL 291
>gi|297161730|gb|ADI11442.1| ECF subfamily RNA polymerase sigma factor [Streptomyces bingchenggensis
BCW-1]
Length=298
Score = 168 bits (426), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 104/290 (36%), Positives = 161/290 (56%), Gaps = 18/290 (6%)
Query 1 MSQHDPVSAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIV 60
MS + ++ + HR++L +A+RM+G + A+D VQE + +L R+ V ++ + GWL
Sbjct 1 MSDKELLAQRFEEHRSHLRAVAYRMLGSLNEADDAVQETWLKLSRSDVSEVQNLGGWLTT 60
Query 61 VTSRLCLDHIKSASTRRERPQDIAAWHDG-----DASVSS---VDPADRVTLDDEVRLAL 112
V R+CLD ++S S+RRE P + DG D VS VDP + + D V +AL
Sbjct 61 VAGRVCLDMLRSRSSRREEP--LPEQQDGPIRLPDPVVSGPGGVDPEQEMLVADSVGIAL 118
Query 113 LIMLERLGPAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVE 172
+I+L+ L PAER+ FVLH++F +P+ +IA +G +++ RQLA RARR++ + AA +
Sbjct 119 MIVLQTLAPAERLAFVLHDLFAVPFDEIAPILGRTSASTRQLASRARRRVEGAAPAADTD 178
Query 173 PAQHRVVTRAFIEACSNGDLDTLLEVLDPGVAGEIDA---RKGVVVVGADRVGPTILRHW 229
A+ R V AF+ A GD D LL VLDP V D R ++ GA V +
Sbjct 179 LARKREVVDAFLTASRGGDFDALLAVLDPDVVARSDGGTLRPSLLRRGAQDVASQAI--- 235
Query 230 SHPATVLVAQPVC--GQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQP 277
+ A+PV G P V++ + V+A +I G+IT + +L P
Sbjct 236 TFARIAEAARPVLINGSPGVVSVAEGRVVSVMAFTIRGGRITALDILTDP 285
>gi|256391672|ref|YP_003113236.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Catenulispora
acidiphila DSM 44928]
gi|256357898|gb|ACU71395.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Catenulispora
acidiphila DSM 44928]
Length=300
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 110/288 (39%), Positives = 156/288 (55%), Gaps = 28/288 (9%)
Query 13 AHRAYLVDLAFRMVGDIGVAEDMVQEAFSR---LLRAPVGDIDDERGWLIVVTSRLCLDH 69
+ R +L++LA+R++G + AED+VQE + R L RA +I WL V SR+CLD
Sbjct 12 SERRHLLNLAYRLLGSLADAEDVVQETYVRWYALSRAQQAEIAAPAAWLTTVASRICLDQ 71
Query 70 IKSASTRRER------PQDI---AAWHDGDASVSS--VDPADRVTLDDEVRLALLIMLER 118
+ SA RRER P+ + +AW SV S DPADR+TLD+ V +A L++L+
Sbjct 72 LGSARARRERYVGQWIPEPLPGRSAW----VSVGSDPGDPADRITLDESVTMAFLVVLDA 127
Query 119 LGPAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQHRV 178
+ PAERV FVLH++F P+ ++ +G A+ CRQLA ARR++ A V +
Sbjct 128 MTPAERVAFVLHDVFRYPFAEVGEIVGRSAAACRQLATSARRRVE---TATGVVTSPDAG 184
Query 179 VTRAFIEACSNGDLDTLLEVLDPGVAGEIDARKGVV------VVGADRVGPTILRHWSHP 232
V RAF A S GD++ LL VL P D GVV V+G + V P
Sbjct 185 VVRAFQRAWSAGDIEGLLAVLAPDAVATGDG-GGVVHAAPEPVIGREAVARFFAERSGTP 243
Query 233 ATVLVAQPVCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTL 280
L V GQP + A V+ A VLA +IE G+I+++ ++ P L
Sbjct 244 GMELAEVEVNGQPGLAARVDGATVSVLAFAIEQGRISRVWAVLNPEKL 291
>gi|111017938|ref|YP_700910.1| sigma factor, includes region 2 [Rhodococcus jostii RHA1]
gi|110817468|gb|ABG92752.1| probable sigma factor, includes region 2 [Rhodococcus jostii
RHA1]
Length=292
Score = 162 bits (411), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 101/284 (36%), Positives = 151/284 (54%), Gaps = 17/284 (5%)
Query 1 MSQHDPVSAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIV 60
M+ +D ++ + AHR +L +A+RM+G + AED VQE++ RL R +++ GWL
Sbjct 1 MNDNDVLAQQFEAHRTHLRAVAYRMLGSLSEAEDAVQESWLRLSRTDADTVENLGGWLTT 60
Query 61 VTSRLCLDHIKSASTRRERPQDIAAWHDGDASVSSVDPADRVTLDDEVRLALLIMLERLG 120
V +R+CL+ ++S TRRE P D A DP L D V LALL++L L
Sbjct 61 VVARVCLNMLQSRRTRREDPLDAAVPDPIVTRADGSDPEHEAVLADSVGLALLVVLGTLA 120
Query 121 PAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQHRVVT 180
PAER+ FVLH++F +P++ IA + + RQLA RARR++ + + +P + R V
Sbjct 121 PAERLAFVLHDMFAVPFEDIAPIVERTPAAARQLASRARRRLQGAPV-PDTDPVRQRAVV 179
Query 181 RAFIEACSNGDLDTLLEVLDPGV----------AGEIDARKGVVVVGADRVGPTILRHWS 230
AF+ A +GD D L+ VLDP V AG +G V +G L ++
Sbjct 180 DAFLAAARSGDFDALVAVLDPDVVLRADTGAVPAGASTMVRGSATVAGRVLGFARLARFA 239
Query 231 HPATVLVAQPVCGQPAVLAFVNRALAGVLALSIEAGKITKIHVL 274
HPA V G V+A + L V+ ++I GKI +I +L
Sbjct 240 HPAL------VNGAAGVVAISDGQLLSVMGVTIRRGKIVEIDIL 277
>gi|345011533|ref|YP_004813887.1| ECF subfamily RNA polymerase sigma-24 subunit [Streptomyces violaceusniger
Tu 4113]
gi|344037882|gb|AEM83607.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Streptomyces
violaceusniger Tu 4113]
Length=290
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 105/276 (39%), Positives = 150/276 (55%), Gaps = 12/276 (4%)
Query 14 HRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIVVTSRLCLDHIKSA 73
R L +A+R+ G + A+D VQE + R PV ++ D R +L V SR+C D + SA
Sbjct 10 QRDRLWAVAYRITGSVADADDAVQETWLRWQALPVDEVADPRAYLTTVISRICYDLLGSA 69
Query 74 STRRERPQDIAAWHDGDASVSSVDPADRVTLDDEVRLALLIMLERLGPAERVVFVLHEIF 133
RRE I W + V++ P DRVTLD+ V LALL +LERL PAER F+LH++F
Sbjct 70 RVRRE--AYIGPWLP-EPVVATAGPEDRVTLDESVGLALLTVLERLTPAERTAFILHDVF 126
Query 134 GLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQHRVVTRAFIEACSNGDLD 193
+P+ +IA +G + RQLA RAR+++ E SV+ +HR AF++A GD++
Sbjct 127 SVPFPEIAEVVGRSPESVRQLASRARKRVREEAPRRSVDRGEHRRAVDAFLQAVLGGDME 186
Query 194 TLLEVLDPGVAGEID-----ARKGVVVVGADRVGPTI--LRHWSHPATVLVAQPVCGQPA 246
LLE+LDP V D A V V+G ++V L PAT++V +
Sbjct 187 GLLEILDPEVVWRSDGGGKVAAARVPVLGNEKVARFAQGLARGFDPATMVVHRCAVNDAP 246
Query 247 VLAFVNRAL--AGVLALSIEAGKITKIHVLVQPSTL 280
L +R A V A S+ G IT+I V++ P L
Sbjct 247 GLVIADRTAGQAVVFAFSVHQGLITEIDVVINPDKL 282
>gi|337763893|emb|CCB72603.1| putative RNA polymerase ECF-subfamily sigma factor [Streptomyces
cattleya NRRL 8057]
Length=294
Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 104/293 (36%), Positives = 156/293 (54%), Gaps = 19/293 (6%)
Query 1 MSQHDPVSAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIV 60
M+ ++ + A R L +A+RM+G + AED VQEA+ +L RA VG + + WL
Sbjct 1 MNDETSLAERFEAERPGLRAVAYRMLGSLAEAEDAVQEAWFKLDRADVGGVRNLGAWLTT 60
Query 61 VTSRLCLDHIKSASTRRERPQ-DIAAW---HDGDASVSS-VDPADRVTLDDEVRLALLIM 115
V R+CLD ++S ++RRE P + W D + S+ V P + V + D V +AL+++
Sbjct 61 VVGRVCLDMLRSRASRREDPMPEQEGWVRLPDPVVTASARVGPEEEVLVADSVGIALMVV 120
Query 116 LERLGPAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQ 175
LE LGPAERV FVLH++F +P+ IA +G + RQLA RARR++ + AA + +
Sbjct 121 LETLGPAERVAFVLHDMFDVPFDDIAPGLGRTVVSTRQLASRARRRVQGATPAADTDNVR 180
Query 176 HRVVTRAFIEACSNGDLDTLLEVLDPGVAGEIDA--------RKGVVVVGADRVGPTILR 227
R V AF+ A GD + LL VLDP V D R+G V + + R
Sbjct 181 KRGVVDAFLTASRGGDFEALLAVLDPDVVARSDGGALVPSVLRRGAADVASQAI--MFAR 238
Query 228 HWSHPATVLVAQPVCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTL 280
+ VL V G P V+AF + V++ +I G++T + +L P L
Sbjct 239 FAAEARPVL----VNGTPGVVAFADGRPLSVMSFTIRDGRVTGLDILTDPERL 287
>gi|297559640|ref|YP_003678614.1| ECF subfamily RNA polymerase sigma-24 subunit [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296844088|gb|ADH66108.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
Length=295
Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 105/291 (37%), Positives = 155/291 (54%), Gaps = 15/291 (5%)
Query 1 MSQHDPVSAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIV 60
M + D ++ + HR +L +A+RM+G + A+D VQEA+ RL R+ I + GWL
Sbjct 1 MDESDFLAERFEEHRVHLRAVAYRMLGSLAEADDAVQEAWLRLARSDTDGIGNLGGWLTT 60
Query 61 VTSRLCLDHIKSASTRRERPQDIAAWHDGDASVSSVDPADRVTLDDEVRLALLIMLERLG 120
V R+CLD ++S + R E P + A D S + DP + D V LALL++LE L
Sbjct 61 VVGRVCLDMLRSRTQRGETPLE-ARLPDPIVSEPATDPEHVALMADSVGLALLVVLESLN 119
Query 121 PAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQHRVVT 180
PAER+ FVLH++FGLP+++IA + + R+LA RAR ++ + +P R V
Sbjct 120 PAERLAFVLHDMFGLPFEEIAPIVDRTPAAARKLASRARVRVRGAAPEPDPDPVAQRRVV 179
Query 181 RAFIEACSNGDLDTLLEVLDPGVAGEIDARKGVVVVGADRV--------GPTILRHWSHP 232
AF+ A GD D L+ VLDP V ID G + G RV G H
Sbjct 180 DAFLRAARGGDFDALVAVLDPDVVLRIDG--GNALPGGMRVLRGREAVAGQAATFH--RM 235
Query 233 ATVLVAQP--VCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTLD 281
AT+ ++P V G+ ++ V+ AL V+ ++ G+IT I +L P LD
Sbjct 236 ATLSTSRPALVNGRAGLVNTVDGALFSVMGFTVTDGRITAIEILSDPERLD 286
>gi|337763736|emb|CCB72446.1| putative RNA polymerase ECF-subfamily sigma factor [Streptomyces
cattleya NRRL 8057]
Length=300
Score = 159 bits (401), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 92/209 (45%), Positives = 122/209 (59%), Gaps = 2/209 (0%)
Query 1 MSQHDPVSAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIV 60
M+ HD ++A + HR L +A R++G G AED VQEA+ RL RA ID GWL
Sbjct 1 MNAHDALAADFETHRDRLRAVAHRLLGSHGEAEDAVQEAWLRLARADADAIDTMGGWLTT 60
Query 61 VTSRLCLDHIKSASTRRERPQDIAA-WHDGDASVSSVDPADRVTLDDEVRLALLIMLERL 119
SR+CLD ++S + RRERP + D D V DP R L D V A+L++L RL
Sbjct 61 TVSRICLDMLRSRAARRERPAGLPGPEEDRDTGVDG-DPEQRTLLADSVGRAVLVVLVRL 119
Query 120 GPAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQHRVV 179
GPAERV FVLH++F +P+ +IA +G + +QLA RARRK+ + + E A+ R V
Sbjct 120 GPAERVAFVLHDMFAVPFGEIAPVVGRSLAAAKQLASRARRKVRGAPAVSGAELARQRGV 179
Query 180 TRAFIEACSNGDLDTLLEVLDPGVAGEID 208
AF+ A GDLD +L VL P V D
Sbjct 180 VEAFLAASRAGDLDAILAVLAPDVVRRAD 208
>gi|269929065|ref|YP_003321386.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Sphaerobacter
thermophilus DSM 20745]
gi|269788422|gb|ACZ40564.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Sphaerobacter
thermophilus DSM 20745]
Length=307
Score = 158 bits (400), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 100/286 (35%), Positives = 147/286 (52%), Gaps = 24/286 (8%)
Query 10 AWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIVVTSRLCLDH 69
A+ AHR L +A+RM+G + AEDM+QEAF R LRAP G++ + +L +RLC+DH
Sbjct 20 AFTAHRPLLFSIAYRMLGSVMDAEDMIQEAFLRWLRAPAGEVASPKAYLTTTITRLCIDH 79
Query 70 IKSASTRRERPQDIAAW-HDGDASVSSVDPADRVTLDDEVRLALLIMLERLGPAERVVFV 128
++SA RRE Q + W + + S D A+ + + LA L+MLERL P ER VF+
Sbjct 80 LRSARVRRE--QYVGPWLPEPLLTASYPDIAETAAQRESISLAFLVMLERLEPVERAVFL 137
Query 129 LHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQHRVVTRAFIEACS 188
L E+F Y +IA + + CRQ+ RAR +I + R V P + + AF+ AC+
Sbjct 138 LREVFDYDYAEIAPIVDKTPTNCRQIVRRARERIADERRRVEVPPERQEALIDAFLGACA 197
Query 189 NGDLDTLLEVLDPGVAGEID-------ARKGVVVVGADRVG-------PTILRHWSHPAT 234
NGDL LL +L + D AR+ +VGADRV P I P T
Sbjct 198 NGDLPGLLTLLADDITMWTDGGPHARAARRP--IVGADRVARFSIGVTPRI-----PPGT 250
Query 235 VLVAQPVCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTL 280
+ GQP V+ + + + +I +I +++ P L
Sbjct 251 TAHHVEINGQPGVVLYAGGEPHTAFVVDLVGDRIHRIWMVLNPDKL 296
>gi|241666621|ref|YP_002984705.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|240862078|gb|ACS59743.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Rhizobium leguminosarum
bv. trifolii WSM1325]
Length=289
Score = 158 bits (400), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 103/284 (37%), Positives = 149/284 (53%), Gaps = 3/284 (1%)
Query 1 MSQHDPVSAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIV 60
M + ++ + A+RA+L AFRM+G AED VQEA+ RL R + + GWL
Sbjct 1 MDEKKWLTEEFEANRAHLRAAAFRMLGSRSEAEDAVQEAWLRLSRTDTTGVGNLGGWLTT 60
Query 61 VTSRLCLDHIKSASTRRERPQDIAAWHDGDASVSSVDPADRVTLDDEVRLALLIMLERLG 120
V +R+CLD +++ TRRE P ++ H G A ++ DP D V LALL++L+ L
Sbjct 61 VVARICLDMLRARKTRREEPLEVPD-HGGIADPAN-DPEREAAFADSVGLALLVVLQTLA 118
Query 121 PAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQHRVVT 180
PAERV FVLH++F LP+ +IA IG ++ RQLA RARR++ A V+ R +
Sbjct 119 PAERVAFVLHDMFDLPFDEIAPIIGRSSAATRQLASRARRRVQGVDEAPDVDFGHKRTIA 178
Query 181 RAFIEACSNGDLDTLLEVLDPGVAGEIDARKGVV-VVGADRVGPTILRHWSHPATVLVAQ 239
AF+ A NGDL+ L+ VL P V DA +G R + + A
Sbjct 179 EAFLTASRNGDLEGLIAVLAPDVVFRPDATAARFGTIGEMRGATDVAEAFKGRAQAAEIA 238
Query 240 PVCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTLDPL 283
V G+ + + L V+AL+I G+I I + P L+ L
Sbjct 239 IVGGELGFVVEIQGQLRVVVALTIADGRIAAIDAIADPEHLERL 282
>gi|54022462|ref|YP_116704.1| putative sigma factor [Nocardia farcinica IFM 10152]
gi|54013970|dbj|BAD55340.1| putative sigma factor [Nocardia farcinica IFM 10152]
Length=293
Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 97/275 (36%), Positives = 146/275 (54%), Gaps = 7/275 (2%)
Query 11 WRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIVVTSRLCLDHI 70
+ HR +L +A+RM+G + A+D VQEA+ RL R GD+D+ GWL V R+CLD +
Sbjct 11 FEEHRTHLRAVAYRMLGSLSDADDAVQEAWLRLARTETGDVDNLGGWLTTVVGRVCLDML 70
Query 71 KSASTRRERPQDIAAWHDGDASV---SSVDPADRVTLDDEVRLALLIMLERLGPAERVVF 127
++ TR E P + H D + ++ DP L D V LALL++LE L PAER+ F
Sbjct 71 RARKTRHEEP--LETEHLPDPVILGENTSDPEHEALLADSVGLALLVVLESLSPAERLAF 128
Query 128 VLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQHRVVTRAFIEAC 187
VLH++F +PY+QIA + T ++LA +ARR++ A + + R V AF+ A
Sbjct 129 VLHDMFAMPYEQIAPIVDRTPQTAKKLASQARRRVQGLTPAPDPDLPRQRRVVDAFLTAA 188
Query 188 SNGDLDTLLEVLDPGVAGEIDARKGVVVVGADRVGPTILRHWSHPATVLVAQP--VCGQP 245
GD D LL++LDP V DA + + V+ + AT+ P V G
Sbjct 189 RGGDFDELLQLLDPDVVLRADAGEAMRVIRGAAAVAGQAETFQRMATLCTVHPAVVNGGT 248
Query 246 AVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTL 280
++ V A V+ ++ +IT I +L P+ L
Sbjct 249 GLVNTVEGAPFSVIGFTVANDRITAIDILSDPTRL 283
>gi|291300793|ref|YP_003512071.1| ECF subfamily RNA polymerase sigma-24 subunit [Stackebrandtia
nassauensis DSM 44728]
gi|290570013|gb|ADD42978.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Stackebrandtia
nassauensis DSM 44728]
Length=292
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 106/289 (37%), Positives = 158/289 (55%), Gaps = 10/289 (3%)
Query 1 MSQHDPVSAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIV 60
M++ ++ ++ HR +L +A+RM+G + AED VQEA+ RL R+ G ID+ GWL
Sbjct 1 MTEQRYLADRFQEHRTHLKAVAYRMLGSLSEAEDAVQEAWLRLARSDDGAIDNLGGWLTT 60
Query 61 VTSRLCLDHIKSASTRRERPQDIAAWHDGDASVSSVDPADRVTLDDEVRLALLIMLERLG 120
V R+CLD ++S +RRE P + D + + DP + D V LALL++LE L
Sbjct 61 VVGRVCLDMLRSRRSRRETPLE-TRLPDPVVTDPAADPEHAALIADSVGLALLVVLESLT 119
Query 121 PAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQHRVVT 180
PAER+ FVLH++FGLP+ +IA + + R+LA RAR ++ S + A R
Sbjct 120 PAERLAFVLHDLFGLPFDEIAPIVDRTPAATRKLASRARGRVRASAPKPDPDRAAQRRAV 179
Query 181 RAFIEACSNGDLDTLLEVLDPGVA--GEIDARKGVVVV-GADRVGPTILRHWSHPATVLV 237
AF+ A GD L+ +LDP V G+ A VVV+ G D V L + A + +
Sbjct 180 DAFLSAAREGDFAALVSILDPDVVLRGDTGALPDVVVLRGRDAVAGQ-LETFHRMAAIAI 238
Query 238 AQP--VCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQP---STLD 281
+P V G L FV+ L +++ S+ G+IT+I +L STLD
Sbjct 239 TRPALVNGTEGQLNFVDGELFSIMSFSVVDGRITEIDILSDAERLSTLD 287
>gi|291435486|ref|ZP_06574876.1| RNA polymerase sigma factor [Streptomyces ghanaensis ATCC 14672]
gi|291338381|gb|EFE65337.1| RNA polymerase sigma factor [Streptomyces ghanaensis ATCC 14672]
Length=297
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 101/291 (35%), Positives = 155/291 (54%), Gaps = 15/291 (5%)
Query 1 MSQHDPVSAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIV 60
MS + ++ + HR +L +A+RM+G + AED VQEA+ RL R G+I + GWL
Sbjct 1 MSDEELLAERFEEHRGHLRAVAYRMLGSLTEAEDAVQEAWLRLGRTDPGEIGNLGGWLTT 60
Query 61 VTSRLCLDHIKSASTRRERPQDIAAWHDG-DASVSSVDPADRVTLDDEVRLALLIMLERL 119
VT R+CLD ++S + RRE+P D D + DP D V +ALL++L+RL
Sbjct 61 VTGRICLDLLRSRTARREQPMDETFVPDPVIRPLPRTDPEQEALRADSVGVALLVVLDRL 120
Query 120 GPAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQHRVV 179
P ER+ FVLH++F +P+ IA +G A+ RQLA RARR++ ++ ++ +P + +
Sbjct 121 APDERLAFVLHDMFAVPFDDIAPVVGRTAAATRQLAGRARRRVRDATPSSEPDPGRQKEA 180
Query 180 TRAFIEACSNGDLDTLLEVLDPGVAGEIDARKGVVVVGADRVGPTILRHWSHPATVLVAQ 239
AF+ A GD + L+ VL P V DA G +V GA G LR A +
Sbjct 181 LDAFMAAARGGDFEALVAVLHPDVVLRADA--GALVRGA--AGSKTLRGAKPVAESALLF 236
Query 240 PVCGQPAVLAFVNRALA----------GVLALSIEAGKITKIHVLVQPSTL 280
A +A VN A+ V+++++ G+IT +++L P L
Sbjct 237 ARYTAAARMALVNDAIGLVSVVEGRIRSVMSVTVTDGRITGLYILADPERL 287
>gi|190895555|ref|YP_001985847.1| RNA polymerase sigma factor protein [Rhizobium etli CIAT 652]
gi|190699500|gb|ACE93584.1| probable RNA polymerase sigma factor protein [Rhizobium etli
CIAT 652]
Length=288
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 99/283 (35%), Positives = 149/283 (53%), Gaps = 2/283 (0%)
Query 1 MSQHDPVSAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIV 60
M + ++ + A+RA+L AFRM+G AED VQEA+ RL R I + GWL
Sbjct 1 MDEKKWLADEFEANRAHLRTAAFRMLGSRSEAEDAVQEAWLRLNRTDATGIGNLGGWLTT 60
Query 61 VTSRLCLDHIKSASTRRERPQDIAAWHDGDASVSSVDPADRVTLDDEVRLALLIMLERLG 120
V +R+CLD +++ +RRE P ++ H A + DP D V LALL++L+ L
Sbjct 61 VVARICLDMLRARKSRREEPLEMP-MHAAVADPAG-DPEREAAFADSVGLALLVVLQTLA 118
Query 121 PAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQHRVVT 180
PAERV FVLH++F LP+ +IA IG ++ RQLA RARR++ + V+ + R +
Sbjct 119 PAERVAFVLHDMFDLPFDEIAPIIGRSSAAARQLASRARRRVQGTDETPDVDLGRKRTIA 178
Query 181 RAFIEACSNGDLDTLLEVLDPGVAGEIDARKGVVVVGADRVGPTILRHWSHPATVLVAQP 240
AF+ A NGDL+ L+ VL P V DA +GA R + + A
Sbjct 179 AAFLTASRNGDLEALIAVLAPDVVFRPDATAARYGIGATRGATDVAAAFKGRAQAAEMAI 238
Query 241 VCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTLDPL 283
V G+ + ++ + + L+I+ G+I I + P L+ L
Sbjct 239 VDGELGFVVHIDGQIRVAVTLTIDEGRIVAIDAVADPDQLERL 281
>gi|327190872|gb|EGE57933.1| putative RNA polymerase sigma factor protein [Rhizobium etli
CNPAF512]
Length=288
Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 100/283 (36%), Positives = 149/283 (53%), Gaps = 2/283 (0%)
Query 1 MSQHDPVSAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIV 60
M + ++ + A+RA+L AFRM+G AED VQEA+ RL R I + GWL
Sbjct 1 MDEKKWLADEFEANRAHLRAAAFRMLGSRSEAEDAVQEAWLRLNRTDATGIGNLGGWLTT 60
Query 61 VTSRLCLDHIKSASTRRERPQDIAAWHDGDASVSSVDPADRVTLDDEVRLALLIMLERLG 120
V +R+CLD +++ +RRE P ++ H A + DP D V LALL++L+ L
Sbjct 61 VVARICLDMLRARKSRREEPLEMP-MHAAVADPAG-DPEREAAFADSVGLALLVVLQTLA 118
Query 121 PAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQHRVVT 180
PAERV FVLH++F LP+ +IA IG ++ RQLA RARR++ + V+ + R +
Sbjct 119 PAERVAFVLHDMFDLPFDEIAPIIGRSSAAVRQLASRARRRVQGTDETPDVDLGRKRTIA 178
Query 181 RAFIEACSNGDLDTLLEVLDPGVAGEIDARKGVVVVGADRVGPTILRHWSHPATVLVAQP 240
AF+ A NGDL+ L+ VL P V DA +GA R + + A
Sbjct 179 AAFLTASRNGDLEALIAVLAPDVVFRPDATAARYGIGAMRGATDVAAAFKGRAQAAEMAI 238
Query 241 VCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTLDPL 283
V G+ + ++ + + L+I+ GKI I + P L+ L
Sbjct 239 VDGELGFVVHIDGQIRVAVTLTIDEGKIVAIDAVADPDQLERL 281
>gi|29833966|ref|NP_828600.1| ECF subfamily RNA polymerase sigma factor [Streptomyces avermitilis
MA-4680]
gi|29611091|dbj|BAC75135.1| putative RNA polymerase ECF-subfamily sigma factor [Streptomyces
avermitilis MA-4680]
Length=322
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 101/289 (35%), Positives = 158/289 (55%), Gaps = 12/289 (4%)
Query 1 MSQHDPVSAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIV 60
MS+ D ++ + HR +L +A+RM+G + A+D VQE + +L A V ++ + GWL
Sbjct 29 MSESDLLAGRFEEHRRHLRAVAYRMLGSLSEADDAVQETWLKLSHADVSEVRNLAGWLTT 88
Query 61 VTSRLCLDHIKSASTRRERPQDIAAWHDGDASVSSVDPADRVTLDDEVRLALLIMLERLG 120
V SR+CL+ ++S ++RRE P D +S+ +DP V L D V LALL++LE L
Sbjct 89 VVSRVCLNMLRSRASRREEPMDTFVPDPVVSSLERIDPEQEVLLADSVGLALLVVLETLE 148
Query 121 PAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQHRVVT 180
PAER+ FVLH++F +P+ IA + ++ RQLA RARR++ S A + + + V
Sbjct 149 PAERLAFVLHDMFAVPFDDIAPIVDRSSAATRQLASRARRRVQGSAPAPDPDLGRQKQVL 208
Query 181 RAFIEACSNGDLDTLLEVLDPGVAGEIDA---RKGV----VVVGADRVGPT--ILRHWSH 231
AF+ A GD + LL VLDP V DA GV +V GA V + R +
Sbjct 209 DAFLAASRGGDFEALLSVLDPDVVLRADAGALAGGVAVSKLVRGAAAVAEQALMFRQLAQ 268
Query 232 PATVLVAQPVCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTL 280
+ +++ V G V+ ++ GV+ +++ G+I I +L P L
Sbjct 269 FSRLVL---VNGAVGVVTVLDGQPMGVMGVTVADGRIVDICILSDPDRL 314
>gi|116255619|ref|YP_771452.1| putative alternative RNA polymerase sigma factor [Rhizobium leguminosarum
bv. viciae 3841]
gi|115260267|emb|CAK03371.1| putative alternative RNA polymerase sigma factor [Rhizobium leguminosarum
bv. viciae 3841]
Length=289
Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/284 (37%), Positives = 150/284 (53%), Gaps = 3/284 (1%)
Query 1 MSQHDPVSAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIV 60
M + ++ + A+RA+L A+RM+G AED VQEA+ RL R + + GWL
Sbjct 1 MDEKKWLADEFEANRAHLRAAAYRMLGSRSEAEDAVQEAWLRLSRTDTTGVGNLGGWLTT 60
Query 61 VTSRLCLDHIKSASTRRERPQDIAAWHDGDASVSSVDPADRVTLDDEVRLALLIMLERLG 120
V +R+CLD +++ TRRE P + A H G A ++ DP D V LALL++L+ L
Sbjct 61 VVARICLDMLRARKTRREEPLE-APIHAGIADPAN-DPEREAAFADSVGLALLVVLQTLA 118
Query 121 PAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQHRVVT 180
PAERV FVLH++F LP+ +IA IG ++ RQLA RARR++ A V+ + R +
Sbjct 119 PAERVAFVLHDMFDLPFDEIAPIIGRSSAATRQLASRARRRVQGVDEAPDVDFGRKRTIA 178
Query 181 RAFIEACSNGDLDTLLEVLDPGVAGEIDARKGVV-VVGADRVGPTILRHWSHPATVLVAQ 239
AF+ A NGDL+ L+ VL P V DA +G R + + A
Sbjct 179 EAFLTASRNGDLERLIAVLAPDVVFRPDATAARFGTIGEMRGAAHVAEAFKGRAQAAEIA 238
Query 240 PVCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTLDPL 283
V G+ + + L V+AL+I G+I I + P L+ L
Sbjct 239 IVGGELGFVVEIQGQLRVVVALTIADGRIAAIDAIADPDHLERL 282
>gi|117164605|emb|CAJ88151.1| putative sigma factor [Streptomyces ambofaciens ATCC 23877]
Length=311
Score = 156 bits (394), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 159/300 (53%), Gaps = 21/300 (7%)
Query 2 SQHDPVSAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSR---LLRAPVGDIDDERGWL 58
++ +P + + R L +LA+R++G + AED+VQE ++R + R I GWL
Sbjct 10 TRTEPSLSVIMSERRRLTNLAYRLLGSLADAEDVVQETYARWYGMSREQQEGIRSPGGWL 69
Query 59 IVVTSRLCLDHIKSASTRRER------PQ---DIAAWHDGDASVSSVDPADRVTLDDEVR 109
V R+CLD + SA RRER P+ D A W G A ++ DPADRVTLD+ V
Sbjct 70 TKVAGRICLDQLGSARARRERYVGEWIPEPLPDRAEWSGGRAGGTASDPADRVTLDESVS 129
Query 110 LALLIMLERLGPAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAA 169
+A L+ML+ + PAERV F+LH++FG P+ ++A +G + CRQLA ARR++ S ++
Sbjct 130 MAFLVMLDAMTPAERVAFILHDVFGYPFAEVAEIVGRTPAACRQLASVARRRLRGSEVSV 189
Query 170 SVEPAQHRVVTRAFIEACSNGDLDTLLEVLDPGVAGEIDARKGVV------VVGADRVGP 223
Q +V R F A D++ L+++LDP G D G+V VVG +R+
Sbjct 190 PRAARQADLV-RDFKLAWEAKDIEALIDLLDPDATGVADG-GGLVDAAPRPVVGNERIAR 247
Query 224 TILRHWSHPATV-LVAQPVCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTLDP 282
++ + A + +V + V G P ++ A V+A + +I + P L P
Sbjct 248 YLIDVTATAADLTIVERTVNGLPGLVVERGGRTAVVMAFEVAGDRIRNFWAVTNPEKLRP 307
>gi|54023594|ref|YP_117836.1| putative sigma factor [Nocardia farcinica IFM 10152]
gi|54015102|dbj|BAD56472.1| putative sigma factor [Nocardia farcinica IFM 10152]
Length=312
Score = 155 bits (393), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 109/299 (37%), Positives = 152/299 (51%), Gaps = 23/299 (7%)
Query 1 MSQHDPVSAA--------WRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLR--APVGD 50
M+ DP +A + HR YL LA+ +G + AED+VQEA+ RL R G+
Sbjct 1 MTSFDPDAAPDTAELARRFEEHRPYLRRLAYSTLGSLSDAEDVVQEAWLRLQRHRQTAGE 60
Query 51 IDDERGWLIVVTSRLCLDHIKSASTRRERPQDIAAWHDGDASVSSVDPADRVTLDDEVRL 110
I++ R WL VT RL LDH+ SA RRE Q + W + DPADR+ D+ V
Sbjct 61 IENLRAWLTTVTGRLALDHLGSARARRE--QYVGEWLPEPEVSTWDDPADRIAQDERVTT 118
Query 111 ALLIMLERLGPAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAAS 170
ALL++LE L PAER FVL E+FG+ ++A +G + RQLA RAR+ + +
Sbjct 119 ALLVVLESLSPAERTAFVLQEVFGMSSPEVAEVVGRTPAAVRQLASRARKHVEQGTPRFP 178
Query 171 VEPAQHRVVTRAFIEACSNGDLDTLLEVLDPGVAGEIDARKGV-----VVVGADRVGPTI 225
P + + V AF A +GDL LL VLD V D V V GA+ V +
Sbjct 179 ASPDEQQKVVSAFALAWRSGDLGALLGVLDDKVTLTADGGGKVPAIRQAVRGAELVAKLL 238
Query 226 LRHW----SHPATVLVAQPVCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTL 280
L + + PA V G+P +L F + GV A +++AG+I I ++ P L
Sbjct 239 LGWYQVQSNRPAWGRFVL-VNGEPGLLVF-DGTHTGVFAFTVDAGRIVAIDIVRNPDKL 295
>gi|260905992|ref|ZP_05914314.1| RNA polymerase, sigma-24 subunit, ECF subfamily protein [Brevibacterium
linens BL2]
Length=325
Score = 155 bits (392), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 106/305 (35%), Positives = 155/305 (51%), Gaps = 35/305 (11%)
Query 12 RAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGD---IDDERGWLIVVTSRLCLD 68
+ R L+ +A+ ++G AED VQEA+ R R P + I WL V +R+CLD
Sbjct 22 QGERLRLLSVAYNLLGSASDAEDAVQEAYLRWYRQPPSERNAIKTPGAWLTKVVTRICLD 81
Query 69 HIKSASTRRE------RPQDIAAWH---DGDASVSSVDPADRVTLDDEVRLALLIMLERL 119
++SA RRE P+ I A+ + +S DPADR++LD+ V +ALLI+L+++
Sbjct 82 QLRSARKRREVYVGEWLPEPIPAFDVRVAEPSGTTSADPADRISLDESVSMALLIVLDKM 141
Query 120 GPAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQHRVV 179
PAERV FVLH++F + +IA +G CRQLA AR++ +S + VE +HR V
Sbjct 142 SPAERVSFVLHDVFQYSFAEIAEIVGRTPHACRQLASSARKRA-KSATSGRVEQDEHRRV 200
Query 180 TRAFIEACSNGDLDTLLEVLDPGVAGEIDARKGVV------VVGADRVGPTILRHWSHPA 233
+AF EA G L LL VLDP V D G+V +VGA++V
Sbjct 201 NQAFKEAWQQGSLTKLLNVLDPSVTAVTDG-GGIVSAAIDPMVGAEQVAAFF-------K 252
Query 234 TVLVAQP--------VCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTLDPLRA 285
V++ QP V QP ++ + + V+A I +I+ I + P L
Sbjct 253 AVMIKQPDLIVSEAVVNYQPGLIGSSHGRVIAVVATQITGTRISNIWAVRNPEKLHLWHN 312
Query 286 ELGGG 290
EL G
Sbjct 313 ELSEG 317
>gi|284028234|ref|YP_003378165.1| ECF subfamily RNA polymerase sigma-24 subunit [Kribbella flavida
DSM 17836]
gi|283807527|gb|ADB29366.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Kribbella flavida
DSM 17836]
Length=289
Score = 155 bits (391), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 106/291 (37%), Positives = 157/291 (54%), Gaps = 14/291 (4%)
Query 1 MSQHDPVSAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIV 60
M+Q D ++ + +R +L +A+RM+G + AED VQEA+ RL R+ +I + GWL
Sbjct 1 MNQDD-LARQFEQNRRHLRAVAYRMLGSLSEAEDAVQEAWLRLSRSDSSEIANLGGWLTT 59
Query 61 VTSRLCLDHIKSASTRRERPQDIAAWHDGDASVSSVDPADRVTLDDEVRLALLIMLERLG 120
V SR+CLD +++ +RRE P D + D VS +DP + D V LA+L++LE L
Sbjct 60 VVSRVCLDMLRARKSRREDPYDT---YVPDPVVSRLDPEEEAVQTDSVGLAMLVVLETLK 116
Query 121 PAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQHRVVT 180
PAER+ FVLH++FG+ + +IA + + RQLA RARR++ + + + R V
Sbjct 117 PAERLAFVLHDLFGVSFDEIAPIVDKTPAATRQLASRARRRVQGAPTSDG-NLGRQREVV 175
Query 181 RAFIEACSNGDLDTLLEVLDPGVAGEIDA--------RKGVVVVGADRVGPTILRHWSHP 232
AF+ A +GD D LL VLDP V DA +V GA V L
Sbjct 176 EAFLAASRSGDFDGLLAVLDPDVVLRADAGAVPATGLATSRLVRGAKTVVEQALLFGRLS 235
Query 233 ATVLVAQPVCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTLDPL 283
VA V G P ++ V+ L GV++ I G+I +I++L S L+ L
Sbjct 236 PHAQVAT-VNGAPGLVTVVDGRLLGVMSPEIRDGRIVEINILADLSRLESL 285
>gi|260905994|ref|ZP_05914316.1| putative sigma factor [Brevibacterium linens BL2]
Length=307
Score = 155 bits (391), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 97/285 (35%), Positives = 150/285 (53%), Gaps = 20/285 (7%)
Query 14 HRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLR---APVGDIDDERGWLIVVTSRLCLDHI 70
R+ L+ L +R++G + AED VQ+ + R R + D+ R WLI SR+C D +
Sbjct 21 ERSILLGLCYRLLGSLSDAEDAVQDTYIRWYRLEDSAREDVRSPRAWLITTASRICFDLL 80
Query 71 KSASTRRER------PQ---DIAAWHDGDASVSSVDPADRVTLDDEVRLALLIMLERLGP 121
SA RRE P+ D +AW +S +S+DPADRV++D+ V +ALL++LE + P
Sbjct 81 GSARVRRELYVGEWLPEPIPDPSAWTSS-SSQASIDPADRVSMDESVSMALLVVLESMTP 139
Query 122 AERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQHRVVTR 181
AERV FVLH++F + ++A +G CRQLA AR++I +SR A V +H V R
Sbjct 140 AERVAFVLHDVFRFTFAEVAEIVGRSPVACRQLASSARKRIRDSRQIA-VPSEEHAAVVR 198
Query 182 AFIEACSNGDLDTLLEVLDPGVAGEIDARKGVVVVGADRVGPTILRHW------SHPATV 235
+F A S GD+ L+E+LDP V D V GP + + P
Sbjct 199 SFKNAWSEGDIGGLIELLDPNVTAVTDGGGLVSAALEPLYGPEAVARFFIGAFGRQPGLH 258
Query 236 LVAQPVCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTL 280
+ Q V G+ ++A + V+++++ +G + I + P L
Sbjct 259 IEEQVVNGEAGLVATSEGKIVAVISVNVSSGMVDHIWAVRNPEKL 303
>gi|209546187|ref|YP_002278077.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|209539044|gb|ACI58977.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Rhizobium leguminosarum
bv. trifolii WSM2304]
Length=289
Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 102/282 (37%), Positives = 150/282 (54%), Gaps = 3/282 (1%)
Query 1 MSQHDPVSAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIV 60
M++ ++ + A+RA+L A+RM+G AED VQEA+ RL RA DI + GWL
Sbjct 1 MNEKKWLADQFEANRAHLRAAAYRMLGSRSEAEDAVQEAWLRLNRADTTDIGNLGGWLTT 60
Query 61 VTSRLCLDHIKSASTRRERPQDIAAWHDGDASVSSVDPADRVTLDDEVRLALLIMLERLG 120
V +R+CLD +++ TRRE+P ++ H A + DP + V +ALL++L+ L
Sbjct 61 VVARICLDMLRARKTRREQPLEMPV-HAAIADPAH-DPERDAAFAESVGVALLVVLQTLA 118
Query 121 PAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQHRVVT 180
PAERV FVLH++F LP+ +IA IG ++ RQLA RARR++ + A V+ + R +
Sbjct 119 PAERVAFVLHDMFDLPFDEIAPIIGRTSAAARQLASRARRRVQGTDEAPDVDFGRKRTIA 178
Query 181 RAFIEACSNGDLDTLLEVLDPGVAGEIDARKGVV-VVGADRVGPTILRHWSHPATVLVAQ 239
AF+ A GDL+ LL VL P V DA G R + + A A
Sbjct 179 EAFLTASRIGDLEALLAVLAPDVVFRPDATAARFGPFGGRRGASEVAELFKGRAQAAEAA 238
Query 240 PVCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTLD 281
V G+ + + L V+ L+I GK+T I P L+
Sbjct 239 LVDGEVGFIVRIKGELRVVVTLTIVDGKVTVIEAFADPDYLE 280
>gi|134098509|ref|YP_001104170.1| putative RNA polymerase sigma factor [Saccharopolyspora erythraea
NRRL 2338]
gi|291003275|ref|ZP_06561248.1| putative RNA polymerase sigma factor [Saccharopolyspora erythraea
NRRL 2338]
gi|133911132|emb|CAM01245.1| putative RNA polymerase sigma factor [Saccharopolyspora erythraea
NRRL 2338]
Length=306
Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 111/306 (37%), Positives = 158/306 (52%), Gaps = 24/306 (7%)
Query 1 MSQHDPVSAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIV 60
M +++ ++ + AHRA+L +A+RM+G AED VQEA+ RL R+ ++ + GWL
Sbjct 1 MDENEFLADRFEAHRAHLRAVAYRMLGSHAEAEDAVQEAWLRLSRSDTSEVANLGGWLTT 60
Query 61 VTSRLCLDHIKSASTRRERPQDIAAWHDGDASVSSVDPA---DRVTLDDEVRLALLIMLE 117
V R+CLD ++S +RRE P+ + H D DPA + L D V ALL++L+
Sbjct 61 VVGRVCLDVLRSRKSRREDPRGV---HLPDEVAGGRDPATPEQQAVLADSVGQALLVVLD 117
Query 118 RLGPAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASV-----E 172
L PAER+ FVLH++F +PY +IA +G + RQLA RARR++ + A +
Sbjct 118 TLEPAERLAFVLHDMFAVPYDEIAPVVGRSTAAARQLASRARRRVQGTSPAGGAGTTEGD 177
Query 173 PAQHRVVTRAFIEACSNGDLDTLLEVLDPGVAGEIDARKGVVVVGADRV-GPTIL----R 227
A+ R V AF+ A GDLD LL VLDP V D V GA R G +L R
Sbjct 178 AARRREVVDAFLTAARGGDLDALLAVLDPDVVLRADP-AAVETAGASRAHGAPLLAGEIR 236
Query 228 HWSHPATVLVAQPVCGQPAVLAFVNRALAG-------VLALSIEAGKITKIHVLVQPSTL 280
S A + QPA++ V A V ++E G+I I V+ P+ L
Sbjct 237 GASAVADTFSGRARGAQPALVDGVLAATYAPGGTPRVVFGFAVEDGRIVGIDVIADPARL 296
Query 281 DPLRAE 286
L E
Sbjct 297 AELDVE 302
>gi|111223115|ref|YP_713909.1| RNA polymerase ECF-subfamily sigma factor [Frankia alni ACN14a]
gi|111150647|emb|CAJ62348.1| putative RNA polymerase ECF-subfamily sigma factor [Frankia alni
ACN14a]
Length=328
Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/295 (36%), Positives = 151/295 (52%), Gaps = 20/295 (6%)
Query 7 VSAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIVVTSRLC 66
++A + AHR L +A+RM+G + A+D VQEA+ RL RA + + GWL V R+C
Sbjct 38 LAARFEAHRGQLRAVAYRMLGSLTEADDAVQEAWLRLSRADSDAVTNLGGWLTTVVGRVC 97
Query 67 LDHIKSASTRRERP-QDIAAWHDGDAS-VSSVDPADRVTLDDEVRLALLIMLERLGPAER 124
LD ++S + RRE P D+ D S VDPA + + D V LALL++LE LGPAER
Sbjct 98 LDMLRSRTARREDPLDDVVRLPDPVVSHADGVDPAQQALIADAVGLALLVVLETLGPAER 157
Query 125 VVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQHRVVTRAFI 184
+ FVLH++F +P+ IA +G + RQLA RARR++ + + V+ + R V AF+
Sbjct 158 LAFVLHDMFAVPFDDIAPIVGRSPAATRQLASRARRRVQGAPATSEVDLVRQRAVVDAFL 217
Query 185 EACSNGDLDTLLEVLDPGV------------AGEIDARKGVVVVGADRVGPTILRHWSHP 232
A GD D L+ VLDP V A + +G V A + + P
Sbjct 218 AAARGGDFDALVAVLDPDVVLRADRGAAGMGAAGSGSTRGAHAVAARALSFRRFGRAARP 277
Query 233 ATVLVAQPVCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTLDPLRAEL 287
A V + A F V+ +I G+IT+I +L P L L +L
Sbjct 278 ALVNGTAGLVTMNAGRPF------AVMGFTISGGRITEIDILADPDRLRTLDLDL 326
>gi|302535941|ref|ZP_07288283.1| sigma factor [Streptomyces sp. C]
gi|302444836|gb|EFL16652.1| sigma factor [Streptomyces sp. C]
Length=315
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/281 (36%), Positives = 152/281 (55%), Gaps = 10/281 (3%)
Query 13 AHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIVVTSRLCLDHIKS 72
AHR L +A+ M+G AED++QE + R ++ +G ++D R +L+ VT+R L+ +++
Sbjct 32 AHRNLLFTVAYEMLGSASDAEDVLQETWLRWVKVDLGQVEDRRAYLVRVTTRQSLNRLRA 91
Query 73 ASTRRERPQDIAAWHDGDASVSSVDPADRVTLDDEVRLALLIMLERLGPAERVVFVLHEI 132
S R+E + W + +++ D A V L + V +A++++LE L P ER VFVL E
Sbjct 92 MSRRKE--SYVGEWLP-EPLLTAPDVAQDVELAESVSMAMMLVLETLSPTERAVFVLREA 148
Query 133 FGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQHRVVTRAFIEACSNGDL 192
F + Y +IA + + RQ+AHRARR ++ R +V +Q R V +F A +GDL
Sbjct 149 FDVGYDEIAAAVDKTPAAVRQIAHRARRHVDARRPRQTVSASQTRAVMESFRRALDSGDL 208
Query 193 DTLLEVLDP-----GVAGEIDARKGVVVVGADRVGPTILRHWSHPATVLVAQP--VCGQP 245
LL+VL P G G I V GAD+VG I+ A P V G P
Sbjct 209 QGLLDVLAPDVVLVGDGGGIKQAALRPVTGADKVGRFIIGGVGKRADRFAITPTVVNGSP 268
Query 246 AVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTLDPLRAE 286
A+LA ++ L GV+A +E G+I I+ + P L + AE
Sbjct 269 ALLAHLDGELDGVMAFHVEDGRIAGIYFVRNPEKLGAVAAE 309
>gi|254381494|ref|ZP_04996858.1| RNA polymerase ECF-subfamily sigma factor [Streptomyces sp. Mg1]
gi|194340403|gb|EDX21369.1| RNA polymerase ECF-subfamily sigma factor [Streptomyces sp. Mg1]
Length=301
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 101/296 (35%), Positives = 148/296 (50%), Gaps = 30/296 (10%)
Query 13 AHRAYLVDLAFRMVGDIGVAEDMVQEAFSR---LLRAPVGDIDDERGWLIVVTSRLCLDH 69
R L++LA+R++G + AED VQE +SR + R I+ WL V SR+CLD
Sbjct 4 GERRQLINLAYRLLGSLADAEDAVQETYSRWYAMSRKQQEAIESPGAWLTTVASRVCLDV 63
Query 70 IKSASTRRERPQDIAAW-----------------HDGDASVSSVDPADRVTLDDEVRLAL 112
+ SA RRER + W DG S S DPADR+TLD+ V LA
Sbjct 64 LGSARARRERY--VGTWIPEPLPNRSERVVGRADDDGTGSADSADPADRITLDESVSLAF 121
Query 113 LIMLERLGPAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESR--IAAS 170
L++LE + PAERV F+LH++F P+ ++A +G + CRQLA RR+I R A +
Sbjct 122 LVVLESMTPAERVAFILHDVFRYPFAEVAEIVGRSPAACRQLASSGRRRIRAERATAAPA 181
Query 171 VEPAQHRVVTRAFIEACSNGDLDTLLEVLDPGVAGEIDARKGVVVV-----GADRVGPTI 225
PA + R F EA N D++ L+ +LDPG D V V GA+ + +
Sbjct 182 GGPAGQAGLVRNFKEAWENKDIEALVGLLDPGAIMTADGGGMVGTVLHPVEGAEDIAAYL 241
Query 226 LR-HWSHPATVLVAQPVCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTL 280
+ P L + V G+P ++A V A+ + G++++I + P L
Sbjct 242 IHIAGKAPGLTLAERTVNGRPGLVALYGGVAVTVAAIDLTDGRVSRIWAVRNPEKL 297
>gi|312196886|ref|YP_004016947.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Frankia sp.
EuI1c]
gi|311228222|gb|ADP81077.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Frankia sp.
EuI1c]
Length=319
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 109/300 (37%), Positives = 166/300 (56%), Gaps = 32/300 (10%)
Query 2 SQHDPVSAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGD-IDDERGWLIV 60
+ + ++ A++A R LV +A+ ++G G AED+V + + RL+ + I D W +V
Sbjct 3 ADEEALAVAFQAARPRLVRVAYAILGSRGDAEDVVADCWLRLVAHHREEPIRDPEAWAVV 62
Query 61 VTSRLCLDHIKSASTRRERPQDIAAWHDGDASVSSV-----DPADRVTLDDEVRLALLIM 115
SR+ +D ++SA RRER + W + +++V DPADRVTLDDEV ALL++
Sbjct 63 TVSRMAVDVLRSARVRRER--YVGPWLP-EPVLTTVAPDQGDPADRVTLDDEVSYALLVV 119
Query 116 LERLGPAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQ 175
LE L PAER FVLH++FGLP+ ++A +G ++ RQLA RARR +++ V+PA+
Sbjct 120 LETLTPAERTAFVLHDLFGLPFPEVADIVGRTPASVRQLASRARRHVHDRAGRPVVDPAE 179
Query 176 HRVVTRAFIEACSNGDLDTLLEVLDPGVAGEIDARKGVV-----VVGADRVGPTILRHWS 230
HR V AF A +GDL TL+ VLDP V D V + GAD+V +L
Sbjct 180 HRRVVEAFAAAAGSGDLGTLIAVLDPEVVLVSDGGGFVTAARRPIHGADKVARFVLG--- 236
Query 231 HPATVLVAQPVCGQPAVLAFVNRA----------LAGVLALSIEAGKITKIHVLVQPSTL 280
++A+ G L VN A L V+AL++ G++ ++ ++V P L
Sbjct 237 -----VLAKGQLGSEIELVRVNGAPGFAVHEAGRLVAVVALTVAGGRVARLDLVVAPDKL 291
>gi|284046577|ref|YP_003396917.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Conexibacter
woesei DSM 14684]
gi|283950798|gb|ADB53542.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Conexibacter
woesei DSM 14684]
Length=280
Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 104/277 (38%), Positives = 143/277 (52%), Gaps = 21/277 (7%)
Query 15 RAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIVVTSRLCLDHIKSAS 74
R L+ LA+ +GD+G AED+VQEA+ RL R I++ GWL V +RL LD ++SA
Sbjct 11 RPRLLRLAYSELGDLGEAEDVVQEAWLRLERVDAETIENLDGWLTTVVARLALDRLRSAR 70
Query 75 TRRERPQDIAAWHDGDASVSSVDPADRVTLDDEVRLALLIMLERLGPAERVVFVLHEIFG 134
RRE + W V S DPADRVTLD+ V ALL +LE+L PAER FVLHE+F
Sbjct 71 ARRE--MYVGPWLP--EPVVSEDPADRVTLDESVSYALLTVLEQLSPAERTAFVLHEVFD 126
Query 135 LPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQHRVVTRAFIEACSNGDLDT 194
+P+ +A +G RQLA RARR + R + +H RAF +A + GDL
Sbjct 127 VPFGDVAEVVGRTPEAVRQLASRARRHVQRERPRFAASRDEHDRAVRAFAQAVTEGDLGD 186
Query 195 LLEVLDPGVAGEID-------ARKGVVVVGADRVGPTILRHWSHPATVLVAQPV----CG 243
L+ VLDP V D ARK + G+ RV R W+ + +P+ G
Sbjct 187 LVAVLDPDVVWTSDGGGHATAARKP--LFGSSRVA----RAWAALSRKSAQEPIETELNG 240
Query 244 QPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTL 280
+ ++ L + G+IT+I + P L
Sbjct 241 RLGLVLPSGDGQRAALLFVVSDGRITRIDAIRNPEKL 277
>gi|302547996|ref|ZP_07300338.1| RNA polymerase sigma-70 factor, ECF subfamily [Streptomyces hygroscopicus
ATCC 53653]
gi|302465614|gb|EFL28707.1| RNA polymerase sigma-70 factor, ECF subfamily [Streptomyces himastatinicus
ATCC 53653]
Length=290
Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 103/282 (37%), Positives = 148/282 (53%), Gaps = 14/282 (4%)
Query 9 AAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIVVTSRLCLD 68
A + R L +A+R+ G + A+D VQE + R P ++ D R +L V SR+C D
Sbjct 5 AEFEQQRDRLWAVAYRITGSVADADDAVQETWLRWQALPGDEVADPRAYLTTVVSRICYD 64
Query 69 HIKSASTRRERPQDIAAWHDGDASVSSVDPADRVTLDDEVRLALLIMLERLGPAERVVFV 128
+ SA RRE I W + V+ P DRVTLD+ V LALL +LERL PAER F+
Sbjct 65 LLGSARVRRE--AYIGPWLP-EPVVAGDGPEDRVTLDESVGLALLTVLERLTPAERTAFI 121
Query 129 LHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQHRVVTRAFIEACS 188
LH++F +P+ +IA +G RQLA R R+++ SV+ +HR AF+ A
Sbjct 122 LHDVFSVPFPEIAEVVGRSPEAVRQLASRGRKRVRAEAPRRSVDRGEHRRAVDAFLSAVM 181
Query 189 NGDLDTLLEVLDPGVAGEIDARKGVV-----VVGAD---RVGPTILRHWSHPATVLVAQP 240
GDLD LLE+LDP V D VV ++G + R + R + + ++ +
Sbjct 182 GGDLDGLLEILDPEVVWRSDGGGKVVASRVPILGNEQVARFAQRLGRGFDELSMAVLRRD 241
Query 241 VCGQPAVLAFVNRA--LAGVLALSIEAGKITKIHVLVQPSTL 280
V G P L V+ A + V A ++ G+IT I V+V P L
Sbjct 242 VNGAPG-LVIVDPAGERSVVFAFTVHHGRITAIDVVVNPDKL 282
>gi|329935018|ref|ZP_08285032.1| RNA polymerase sigma-70 factor [Streptomyces griseoaurantiacus
M045]
gi|329305263|gb|EGG49120.1| RNA polymerase sigma-70 factor [Streptomyces griseoaurantiacus
M045]
Length=310
Score = 152 bits (384), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 107/291 (37%), Positives = 148/291 (51%), Gaps = 26/291 (8%)
Query 13 AHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGD---IDDERGWLIVVTSRLCLDH 69
A R L+ LAFRM G + AED+VQE + R R G+ I WL V SR+ LD
Sbjct 17 AERPRLLSLAFRMTGTLADAEDVVQETYIRWYRLEAGEREAIAVPAAWLTRVASRISLDL 76
Query 70 IKSASTRRER------PQDIAAWHDGDASV------SSVDPADRVTLDDEVRLALLIMLE 117
+ SA RRE P+ + A A+ S+ DP DRVTLDD V +ALL +LE
Sbjct 77 LGSARARRETYVGQWLPEPVPAGLFAGAATAPASGRSAADPLDRVTLDDAVGMALLTVLE 136
Query 118 RLGPAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQHR 177
+ PAERV FVLH++FG+P+ +IA +G A+ RQLA ARR + + R V +H
Sbjct 137 AMTPAERVTFVLHDVFGVPFGEIAGVVGRSAAATRQLATSARRHVRQGR-RTRVPARRHD 195
Query 178 VVTRAFIEACSNGDLDTLLEVLDPGVAGEIDARKGVVVVGADRV--GPTILRHW------ 229
V RAF EA G ++ LL VL P V +D G V A RV GP + W
Sbjct 196 EVVRAFREAAVGGRMEDLLRVLAPDVELRVDG--GGFVNAAPRVVRGPDHVARWLMGVRR 253
Query 230 SHPATVLVAQPVCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTL 280
P+ + + +R G+L +E G++T++ +++ P L
Sbjct 254 KEPSLRFERRDTADGLGYMLRADRHRYGMLTFGVEEGRVTRVWLMLNPEKL 304
>gi|302562298|ref|ZP_07314640.1| RNA polymerase sigma-70 factor [Streptomyces griseoflavus Tu4000]
gi|302479916|gb|EFL43009.1| RNA polymerase sigma-70 factor [Streptomyces griseoflavus Tu4000]
Length=300
Score = 152 bits (384), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 96/284 (34%), Positives = 153/284 (54%), Gaps = 10/284 (3%)
Query 11 WRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIVVTSRLCLDHI 70
+ HR +L +A+RM+G + AED VQE + RL RA ID+ GWL VT R+CLD +
Sbjct 15 FEEHRGHLGAVAYRMLGSLTEAEDAVQETWLRLGRADTAAIDNLGGWLTTVTGRICLDLL 74
Query 71 KSASTRRERPQDIAAWHDG--DASVSSVDPADRVTLDDEVRLALLIMLERLGPAERVVFV 128
++ +TRRE+P D D + DP D V +A+L++LE+L P ER+ FV
Sbjct 75 RARTTRREQPMDETFVPDPVIGPLTAQADPEQEALRADSVGVAMLVVLEKLEPDERLAFV 134
Query 129 LHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQHRVVTRAFIEACS 188
LH++F +P+ IA + A+ RQLA RARR++ ++ + + + + AF+ A
Sbjct 135 LHDMFAVPFDDIAPVVERNAAATRQLASRARRRVRDTVPPSDPDLGRQKEALDAFMAAAR 194
Query 189 NGDLDTLLEVLDPGVAGEIDAR---KGV----VVVGADRVGPTILRHWSHPATVLVAQPV 241
GD + L+ VL P V DA +G+ ++ GA V + L + A + V
Sbjct 195 GGDFEALVAVLHPDVVLRADAGALVRGITASKILRGARTVAESALMFARYTAAARMVL-V 253
Query 242 CGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTLDPLRA 285
+L+ V+ + V++ ++E G+IT +++L P LD L A
Sbjct 254 NDGAGLLSVVDGRIRSVMSFTVENGRITAVYILADPDRLDHLEA 297
>gi|328883906|emb|CCA57145.1| putative RNA polymerase sigma factor [Streptomyces venezuelae
ATCC 10712]
Length=319
Score = 152 bits (383), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 96/280 (35%), Positives = 151/280 (54%), Gaps = 10/280 (3%)
Query 11 WRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIVVTSRLCLDHI 70
+ A R +L +A+RM+G + AED VQEA+ +L R+ V +++ GWL V R+CLD +
Sbjct 31 FEADRGHLRAVAYRMLGSLSEAEDAVQEAWFKLNRSDVSAVENLSGWLTTVVGRVCLDML 90
Query 71 KSASTRRERPQDIAAWHDGDASVSSVDPADRVTLDDEVRLALLIMLERLGPAERVVFVLH 130
+S +RRE P + + DP + + V LALL++LE LGPAER+ FVLH
Sbjct 91 RSRGSRREDPLEYYVPDPVVRVAGATDPEHTAEVTESVGLALLVVLETLGPAERLAFVLH 150
Query 131 EIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQHRVVTRAFIEACSNG 190
++F + + +IA + + RQLA RARR++ ++ A + + R + AF+ A + G
Sbjct 151 DMFAVSFDEIARIVDRTPAATRQLASRARRRVQDATPAPGPDARRQREIADAFLAAANGG 210
Query 191 DLDTLLEVLDPGVAGEIDARKGVVVV-----GADRVGPTILRH--WSHPATVLVAQPVCG 243
D + LL VLDP V D + + V GA+ V L + + A +V V G
Sbjct 211 DFEGLLAVLDPDVVLRADGGRTLAAVSKLVRGAEAVISQALMYARFRQAALPVV---VNG 267
Query 244 QPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTLDPL 283
PAVL+ V+ ++A +I +I ++ +L P L L
Sbjct 268 APAVLSVVDGRPGALMAFTIAGDRIVELQILADPERLAAL 307
>gi|271968368|ref|YP_003342564.1| ECF subfamily RNA polymerase sigma-24 subunit [Streptosporangium
roseum DSM 43021]
gi|270511543|gb|ACZ89821.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Streptosporangium
roseum DSM 43021]
Length=292
Score = 152 bits (383), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 112/287 (40%), Positives = 151/287 (53%), Gaps = 16/287 (5%)
Query 2 SQHDPVSAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIVV 61
S DPV+ A+ A R L +A+RM+G AED+VQEA+ RL R I + GWL V
Sbjct 5 SPTDPVAEAFEAQRDRLRAVAYRMLGSHADAEDVVQEAWLRLSRQDTATIHNLAGWLTTV 64
Query 62 TSRLCLDHIKSASTRRER------PQDIAAWHDGDASVSSVDPADRVTLDDEVRLALLIM 115
R+ LD ++S T E P+ + DG A P D V L D V LALL++
Sbjct 65 VGRISLDVLRSRQTHPEASYDDRLPELVVTVDDGPA------PEDDVALADSVGLALLVV 118
Query 116 LERLGPAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQ 175
LE LGPAER+ FVLH++F +P+ +I +G A + LA RARRK+ + A V Q
Sbjct 119 LESLGPAERLAFVLHDLFAVPFDEIGQILGRSADAAKMLASRARRKVRGTERPAVVGREQ 178
Query 176 HRVVTRAFIEACSNGDLDTLLEVLDPGVAGEIDARKGVVV-VGADRVGPTILRHWSHPAT 234
VV +AF+ A GD + LL VLDP V ID GVVV +GA V R + A
Sbjct 179 REVV-QAFLAAARRGDFEGLLRVLDPEVRLTIDTPDGVVVTLGATEVAAGA-RLSAGAAV 236
Query 235 VLVAQPVCGQPAVLAFVNRALA-GVLALSIEAGKITKIHVLVQPSTL 280
A V G P ++A+ V A +I G+I I +++ P+ L
Sbjct 237 RGRAVLVNGLPGIVAWREDGTPLSVAAFTIADGRIAGIAIVIDPAKL 283
>gi|320012102|gb|ADW06952.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Streptomyces
flavogriseus ATCC 33331]
Length=302
Score = 152 bits (383), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 104/298 (35%), Positives = 161/298 (55%), Gaps = 19/298 (6%)
Query 5 DPVSAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDERGWLIVVTSR 64
D S + AHR +L +A+RM+G + AED+VQEA+ R A D+ + R +L+ VT+R
Sbjct 4 DTASDLFEAHRPFLTGVAYRMLGRVADAEDVVQEAWLRWSSAGREDVREPRAFLVRVTTR 63
Query 65 LCLDHIKSASTRRERPQDIAAWHDGDASVSSVDPA-----DRVTLDDEVRLALLIMLERL 119
L +D ++ +RRE + W + V+ PA +R L D V LA+L++LE L
Sbjct 64 LAIDRLRHLRSRRE--AYVGPWLP-EPVVTEFGPAVPDSAERAVLADSVSLAVLVVLETL 120
Query 120 GPAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQHRVV 179
P ER VFVL E FG PY +I T+ + RQLA RA+R + E + V+PA R +
Sbjct 121 SPLERAVFVLREAFGFPYAEIGATLDRSEAAVRQLAGRAKRHVEERKPRYEVDPAVRRDL 180
Query 180 TRAFIEACSNGDLDTLLEVLDPGV------AGEIDARKGVVVVGADRVGPTIL---RHWS 230
T F+ A S GDL+ LL +L P + G+ A + ++ +D+VG +L + WS
Sbjct 181 TERFLAAASGGDLEKLLALLAPDIRLVSDSGGKAKAPRRIIET-SDKVGRFLLAVAQDWS 239
Query 231 HPATVLVAQPVCGQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTLDPLRAELG 288
A V + + G PA++ V+ + V + IE G I ++++ P L +R + G
Sbjct 240 TAAEARVLE-LNGGPALVFSVDGQVDTVFQVEIEDGVIRCVYIIRNPDKLAGVRLDRG 296
Lambda K H
0.322 0.136 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 473963892608
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40