BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1194c
Length=421
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608334|ref|NP_215710.1| hypothetical protein Rv1194c [Mycob... 845 0.0
gi|254364095|ref|ZP_04980141.1| conserved hypothetical protein [... 843 0.0
gi|340626208|ref|YP_004744660.1| hypothetical protein MCAN_12051... 843 0.0
gi|289744939|ref|ZP_06504317.1| conserved hypothetical protein [... 842 0.0
gi|183984214|ref|YP_001852505.1| transcriptional regulatory prot... 649 0.0
gi|118616706|ref|YP_905038.1| transcriptional regulatory protein... 640 0.0
gi|240169039|ref|ZP_04747698.1| transcriptional regulatory prote... 628 5e-178
gi|15827510|ref|NP_301773.1| hypothetical protein ML1052 [Mycoba... 598 4e-169
gi|699188|gb|AAA62953.1| trx [Mycobacterium leprae] 597 9e-169
gi|15609507|ref|NP_216886.1| hypothetical protein Rv2370c [Mycob... 535 8e-150
gi|298524960|ref|ZP_07012369.1| transcriptional activator protei... 524 9e-147
gi|15840913|ref|NP_335950.1| hypothetical protein MT1500 [Mycoba... 524 9e-147
gi|57116867|ref|NP_215969.2| transcriptional activator protein [... 523 3e-146
gi|31792647|ref|NP_855140.1| transcriptional activator protein [... 523 3e-146
gi|340626467|ref|YP_004744919.1| putative transcriptional activa... 521 9e-146
gi|240167827|ref|ZP_04746486.1| hypothetical protein MkanA1_0082... 508 1e-141
gi|183982271|ref|YP_001850562.1| transcriptional activator prote... 503 2e-140
gi|183981147|ref|YP_001849438.1| hypothetical protein MMAR_1127 ... 499 3e-139
gi|240172052|ref|ZP_04750711.1| transcriptional regulatory prote... 486 3e-135
gi|289757561|ref|ZP_06516939.1| transcriptional activator protei... 477 2e-132
gi|118618591|ref|YP_906923.1| transcriptional regulator [Mycobac... 464 1e-128
gi|183982113|ref|YP_001850404.1| transcriptional regulator [Myco... 464 2e-128
gi|289758492|ref|ZP_06517870.1| conserved hypothetical protein [... 455 5e-126
gi|289745203|ref|ZP_06504581.1| transcriptional activator protei... 455 6e-126
gi|294633995|ref|ZP_06712551.1| regulatory protein [Streptomyces... 434 2e-119
gi|118617459|ref|YP_905791.1| transcriptional activator protein ... 400 2e-109
gi|288916819|ref|ZP_06411192.1| putative transcriptional regulat... 400 3e-109
gi|29827930|ref|NP_822564.1| hypothetical protein SAV_1389 [Stre... 392 5e-107
gi|296393206|ref|YP_003658090.1| PucR family transcriptional reg... 368 1e-99
gi|289443891|ref|ZP_06433635.1| conserved hypothetical protein [... 355 8e-96
gi|296141540|ref|YP_003648783.1| PucR family transcriptional reg... 343 3e-92
gi|289705749|ref|ZP_06502133.1| conserved hypothetical protein [... 339 7e-91
gi|284990852|ref|YP_003409406.1| putative PucR family transcript... 335 1e-89
gi|78059959|ref|YP_366534.1| putative regulator of polyketide sy... 326 5e-87
gi|289570513|ref|ZP_06450740.1| conserved hypothetical protein [... 296 5e-78
gi|254240668|ref|ZP_04933990.1| conserved hypothetical protein [... 284 2e-74
gi|26989534|ref|NP_744959.1| hypothetical protein PP_2815 [Pseud... 284 2e-74
gi|313110892|ref|ZP_07796735.1| hypothetical protein PA39016_002... 272 8e-71
gi|107101671|ref|ZP_01365589.1| hypothetical protein PaerPA_0100... 272 9e-71
gi|218891802|ref|YP_002440669.1| hypothetical protein PLES_30801... 271 1e-70
gi|296140575|ref|YP_003647818.1| PucR family transcriptional reg... 264 3e-68
gi|54023238|ref|YP_117480.1| hypothetical protein nfa12710 [Noca... 260 4e-67
gi|326381991|ref|ZP_08203684.1| putative transcriptional regulat... 257 3e-66
gi|169629742|ref|YP_001703391.1| hypothetical protein MAB_2657c ... 252 1e-64
gi|289574129|ref|ZP_06454356.1| LOW QUALITY PROTEIN: transcripti... 235 9e-60
gi|226359516|ref|YP_002777294.1| CdaR family transcriptional reg... 231 1e-58
gi|240170335|ref|ZP_04748994.1| hypothetical protein MkanA1_1356... 224 2e-56
gi|111020760|ref|YP_703732.1| hypothetical protein RHA1_ro03774 ... 215 9e-54
gi|304319834|ref|YP_003853477.1| hypothetical protein PB2503_012... 211 1e-52
gi|297197571|ref|ZP_06914968.1| conserved hypothetical protein [... 193 5e-47
>gi|15608334|ref|NP_215710.1| hypothetical protein Rv1194c [Mycobacterium tuberculosis H37Rv]
gi|15840637|ref|NP_335674.1| hypothetical protein MT1231 [Mycobacterium tuberculosis CDC1551]
gi|31792387|ref|NP_854880.1| hypothetical protein Mb1226c [Mycobacterium bovis AF2122/97]
72 more sequence titles
Length=421
Score = 845 bits (2183), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/421 (99%), Positives = 421/421 (100%), Gaps = 0/421 (0%)
Query 1 VAWQQPSPRIRELIREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRAN 60
+AWQQPSPRIRELIREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRAN
Sbjct 1 MAWQQPSPRIRELIREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRAN 60
Query 61 LVYWAAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAF 120
LVYWAAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAF
Sbjct 61 LVYWAAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAF 120
Query 121 ELTSDPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDG 180
ELTSDPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDG
Sbjct 121 ELTSDPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDG 180
Query 181 APISPERAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGA 240
APISPERAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGA
Sbjct 181 APISPERAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGA 240
Query 241 ASRWAWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLR 300
ASRWAWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLR
Sbjct 241 ASRWAWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLR 300
Query 301 STQRVAFFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAA 360
STQRVAFFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAA
Sbjct 301 STQRVAFFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAA 360
Query 361 KRLHTHRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWRGNKAHALSSPGRRSNSVP 420
KRLHTHRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWRGNKAHALSSPGRRSNSVP
Sbjct 361 KRLHTHRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWRGNKAHALSSPGRRSNSVP 420
Query 421 A 421
A
Sbjct 421 A 421
>gi|254364095|ref|ZP_04980141.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|134149609|gb|EBA41654.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
Length=421
Score = 843 bits (2177), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/421 (99%), Positives = 420/421 (99%), Gaps = 0/421 (0%)
Query 1 VAWQQPSPRIRELIREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRAN 60
+AWQQPSPRIRELIREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRAN
Sbjct 1 MAWQQPSPRIRELIREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRAN 60
Query 61 LVYWAAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAF 120
LVYWAAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWR WMGIAF
Sbjct 61 LVYWAAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRLWMGIAF 120
Query 121 ELTSDPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDG 180
ELTSDPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDG
Sbjct 121 ELTSDPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDG 180
Query 181 APISPERAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGA 240
APISPERAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGA
Sbjct 181 APISPERAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGA 240
Query 241 ASRWAWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLR 300
ASRWAWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLR
Sbjct 241 ASRWAWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLR 300
Query 301 STQRVAFFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAA 360
STQRVAFFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAA
Sbjct 301 STQRVAFFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAA 360
Query 361 KRLHTHRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWRGNKAHALSSPGRRSNSVP 420
KRLHTHRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWRGNKAHALSSPGRRSNSVP
Sbjct 361 KRLHTHRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWRGNKAHALSSPGRRSNSVP 420
Query 421 A 421
A
Sbjct 421 A 421
>gi|340626208|ref|YP_004744660.1| hypothetical protein MCAN_12051 [Mycobacterium canettii CIPT
140010059]
gi|340004398|emb|CCC43541.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=421
Score = 843 bits (2177), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/421 (99%), Positives = 421/421 (100%), Gaps = 0/421 (0%)
Query 1 VAWQQPSPRIRELIREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRAN 60
+AWQQPSPRIRELIREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRAN
Sbjct 1 MAWQQPSPRIRELIREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRAN 60
Query 61 LVYWAAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAF 120
LVYWAAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAF
Sbjct 61 LVYWAAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAF 120
Query 121 ELTSDPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDG 180
ELTSDPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDG
Sbjct 121 ELTSDPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDG 180
Query 181 APISPERAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGA 240
APISPERAEAKLGYPL+RAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGA
Sbjct 181 APISPERAEAKLGYPLNRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGA 240
Query 241 ASRWAWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLR 300
ASRWAWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLR
Sbjct 241 ASRWAWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLR 300
Query 301 STQRVAFFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAA 360
STQRVAFFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAA
Sbjct 301 STQRVAFFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAA 360
Query 361 KRLHTHRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWRGNKAHALSSPGRRSNSVP 420
KRLHTHRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWRGNKAHALSSPGRRSNSVP
Sbjct 361 KRLHTHRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWRGNKAHALSSPGRRSNSVP 420
Query 421 A 421
A
Sbjct 421 A 421
>gi|289744939|ref|ZP_06504317.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|289685467|gb|EFD52955.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
Length=421
Score = 842 bits (2175), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/421 (99%), Positives = 420/421 (99%), Gaps = 0/421 (0%)
Query 1 VAWQQPSPRIRELIREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRAN 60
+AWQQPSPRIRELIREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRAN
Sbjct 1 MAWQQPSPRIRELIREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRAN 60
Query 61 LVYWAAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAF 120
LVYWAAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAF
Sbjct 61 LVYWAAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAF 120
Query 121 ELTSDPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDG 180
ELTSDPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDG
Sbjct 121 ELTSDPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDG 180
Query 181 APISPERAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGA 240
APISPERAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGA
Sbjct 181 APISPERAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGA 240
Query 241 ASRWAWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLR 300
ASRWAWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLR
Sbjct 241 ASRWAWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLR 300
Query 301 STQRVAFFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAA 360
STQRVA FADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAA
Sbjct 301 STQRVASFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAA 360
Query 361 KRLHTHRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWRGNKAHALSSPGRRSNSVP 420
KRLHTHRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWRGNKAHALSSPGRRSNSVP
Sbjct 361 KRLHTHRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWRGNKAHALSSPGRRSNSVP 420
Query 421 A 421
A
Sbjct 421 A 421
>gi|183984214|ref|YP_001852505.1| transcriptional regulatory protein [Mycobacterium marinum M]
gi|183177540|gb|ACC42650.1| transcriptional regulatory protein [Mycobacterium marinum M]
Length=421
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/419 (76%), Positives = 363/419 (87%), Gaps = 0/419 (0%)
Query 3 WQQPSPRIRELIREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRANLV 62
WQ+PS RIRELIREGAR ALN PEWIEELDR T++ANP IANDPVLAKVV+ ANRANLV
Sbjct 3 WQRPSSRIRELIREGARRALNAGPEWIEELDRETVSANPTIANDPVLAKVVKRANRANLV 62
Query 63 YWAAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAFEL 122
+WAAAN+R PGA VPANLG EPLRMARDLVRRGL+T+ +IYR G++I WR W+ IAF+L
Sbjct 63 HWAAANVRHPGAPVPANLGGEPLRMARDLVRRGLETLTLDIYRIGQYIAWRLWINIAFDL 122
Query 123 TSDPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDGAP 182
TSDPQELRELLDVSA+SVN+FIEATL GIAAQVQ EHDELTR HA+RLEVVG +L+GAP
Sbjct 123 TSDPQELRELLDVSAKSVNEFIEATLAGIAAQVQLEHDELTRGNHADRLEVVGHLLEGAP 182
Query 183 ISPERAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGAAS 242
IS ERAE +LGY L RAHTAAIIWSD+ DGDHS LDRAAD FCHAVGS++ LTVVA AA+
Sbjct 183 ISRERAETRLGYSLIRAHTAAIIWSDDFDGDHSNLDRAADAFCHAVGSSQDLTVVANAAT 242
Query 243 RWAWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLRST 302
RW W+ +A LDIDT++ AVDNA ARIAIGT A+G+EGFRRSHLEAL TQRTL+RL+S
Sbjct 243 RWVWLAEATNLDIDTIEQAVDNASDARIAIGTKASGIEGFRRSHLEALTTQRTLARLKSD 302
Query 303 QRVAFFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAAKR 362
QRVAFF+DV++VALI+QNP AA EFITSTLG+LESA+P+LQ LL FINEQCNASRAAKR
Sbjct 303 QRVAFFSDVQIVALITQNPQAADEFITSTLGELESAAPELQATLLMFINEQCNASRAAKR 362
Query 363 LHTHRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWRGNKAHALSSPGRRSNSVPA 421
L+THRNT LRR+E+AQRLLPRPL HTSVHVAVALEALQWRG+ L +P + + VPA
Sbjct 363 LYTHRNTLLRRIEAAQRLLPRPLAHTSVHVAVALEALQWRGDNIAKLPTPTSQDDEVPA 421
>gi|118616706|ref|YP_905038.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
gi|118568816|gb|ABL03567.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
Length=421
Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/419 (75%), Positives = 360/419 (86%), Gaps = 0/419 (0%)
Query 3 WQQPSPRIRELIREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRANLV 62
WQ+PS RIRELIREGAR ALN PEWIEELDR T++ANP IANDPVLAKVV+ NRANLV
Sbjct 3 WQRPSSRIRELIREGARRALNAGPEWIEELDRETVSANPTIANDPVLAKVVKRVNRANLV 62
Query 63 YWAAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAFEL 122
+WAAAN+R PGA VPANLG EPLRMARDLVRRGL+ + +IYR G++I WR W+ IAF+L
Sbjct 63 HWAAANVRHPGAPVPANLGGEPLRMARDLVRRGLEALTLDIYRIGQYIAWRLWINIAFDL 122
Query 123 TSDPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDGAP 182
TSDPQEL ELLDVSA+SVN+FIEATL GIAAQVQ EHDELTR HA+RLEVVG +L+GAP
Sbjct 123 TSDPQELHELLDVSAKSVNEFIEATLAGIAAQVQLEHDELTRGNHADRLEVVGHLLEGAP 182
Query 183 ISPERAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGAAS 242
IS ERAE +LGY L RAHTAAIIWSD+ DGDHS LDRAAD FCHAVGS++ LTVVA AA+
Sbjct 183 ISRERAETRLGYSLIRAHTAAIIWSDDFDGDHSNLDRAADAFCHAVGSSQDLTVVANAAT 242
Query 243 RWAWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLRST 302
RW W+ +A LDIDT++ AVDNA ARIAIGT A+G+EGFRRSHLEAL TQRTL+RL+S
Sbjct 243 RWVWLAEATNLDIDTIEQAVDNASDARIAIGTKASGIEGFRRSHLEALTTQRTLARLKSD 302
Query 303 QRVAFFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAAKR 362
QRVAFF+DV++VALI+QN AA+EFITSTLG+LESA+P+LQ LL FINEQCNASRAAKR
Sbjct 303 QRVAFFSDVQIVALITQNTQAANEFITSTLGELESAAPELQATLLMFINEQCNASRAAKR 362
Query 363 LHTHRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWRGNKAHALSSPGRRSNSVPA 421
L+THRNT LRR+E+AQRLLPRPL HTSVHVAVALEALQWRG+ L +P + + VPA
Sbjct 363 LYTHRNTLLRRIEAAQRLLPRPLAHTSVHVAVALEALQWRGDNIAKLPTPTSQDDEVPA 421
>gi|240169039|ref|ZP_04747698.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC
12478]
Length=421
Score = 628 bits (1620), Expect = 5e-178, Method: Compositional matrix adjust.
Identities = 322/418 (78%), Positives = 362/418 (87%), Gaps = 0/418 (0%)
Query 4 QQPSPRIRELIREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRANLVY 63
Q+PSPRIRELIREGARIALNP PEWI ELDRAT+AANPAIA+DPVLAKVVQ ANRANLV+
Sbjct 4 QRPSPRIRELIREGARIALNPGPEWITELDRATVAANPAIADDPVLAKVVQKANRANLVH 63
Query 64 WAAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAFELT 123
WAAAN+RDPGA VP NLG EPLRMARDLVRRGLDT+A ++YRTGE+I WR W+ IAF+LT
Sbjct 64 WAAANMRDPGAPVPPNLGAEPLRMARDLVRRGLDTLAHDVYRTGEYIAWRLWLHIAFDLT 123
Query 124 SDPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDGAPI 183
+DP ELRELLDVSARSVNDFIEATL GIAAQ+Q EH EL R +HAERLEVVGL+L+GAPI
Sbjct 124 ADPAELRELLDVSARSVNDFIEATLAGIAAQIQLEHHELNRGSHAERLEVVGLLLEGAPI 183
Query 184 SPERAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGAASR 243
S ERAEA+LGYPL+RAHTAAI+WSDE+DG+H LDRAAD F HAVG + LTVVA AA+R
Sbjct 184 SRERAEARLGYPLNRAHTAAIVWSDEIDGNHGDLDRAADAFSHAVGYAQQLTVVASAATR 243
Query 244 WAWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLRSTQ 303
W W+ DA GLDI V+ A+D+ GARIAIGTTA G GF+RSHLEAL TQRTL RL+S Q
Sbjct 244 WVWLADAAGLDIAAVERALDSTAGARIAIGTTATGTGGFQRSHLEALTTQRTLMRLQSGQ 303
Query 304 RVAFFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAAKRL 363
RVAFF+DV+MVAL++QNP AASEFI+STLGDLES SP+LQT LLTFINEQCNASRAAKRL
Sbjct 304 RVAFFSDVQMVALVTQNPQAASEFISSTLGDLESGSPELQTTLLTFINEQCNASRAAKRL 363
Query 364 HTHRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWRGNKAHALSSPGRRSNSVPA 421
+THRNT LRR+ESAQRLLPRPL TSV VAVALEAL+WRG+ L P R + VPA
Sbjct 364 YTHRNTLLRRIESAQRLLPRPLGRTSVEVAVALEALRWRGSDIGNLPGPARHGDGVPA 421
>gi|15827510|ref|NP_301773.1| hypothetical protein ML1052 [Mycobacterium leprae TN]
gi|221229987|ref|YP_002503403.1| hypothetical protein MLBr_01052 [Mycobacterium leprae Br4923]
gi|13093060|emb|CAC31433.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219933094|emb|CAR71147.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=421
Score = 598 bits (1543), Expect = 4e-169, Method: Compositional matrix adjust.
Identities = 294/421 (70%), Positives = 350/421 (84%), Gaps = 0/421 (0%)
Query 1 VAWQQPSPRIRELIREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRAN 60
+A Q PSPR+RELIREGARIALNP+ EWI++LDRAT AANPAIANDPVLAKVV+ A+RA+
Sbjct 1 MARQHPSPRVRELIREGARIALNPTQEWIDQLDRATFAANPAIANDPVLAKVVRRASRAH 60
Query 61 LVYWAAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAF 120
LV+WA ANLRDPGA VPA+LG EPL MARDLVRRG D +A +IYR G++ WR WM IAF
Sbjct 61 LVHWATANLRDPGAPVPAHLGPEPLTMARDLVRRGRDVLALDIYRVGQYTAWRRWMEIAF 120
Query 121 ELTSDPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDG 180
LTSDPQELRE+L+VSA+S+N+++ ATL IA +Q E DELTRSTHAERLEVV LIL+G
Sbjct 121 TLTSDPQELREILNVSAQSINEYVAATLEAIATHMQLERDELTRSTHAERLEVVDLILEG 180
Query 181 APISPERAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGA 240
AP++ ERAEA+LGY L HTAA+IWSD+LDGDH YLD+AA+ F H V ST+ L VVA A
Sbjct 181 APVTQERAEARLGYRLGLTHTAAVIWSDDLDGDHGYLDQAAEAFSHVVESTQQLIVVASA 240
Query 241 ASRWAWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLR 300
A+RW W+ DA LD+ VQ A+ N AR+AIGT++ G+EGFRRSHLEAL QRTL+RL+
Sbjct 241 ATRWVWLADALALDVPEVQKALLNLSKARVAIGTSSAGIEGFRRSHLEALTAQRTLARLK 300
Query 301 STQRVAFFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAA 360
S Q+VAFFADV++V+LI+QNP+ A EFITSTLGD ESASP LQ LLTFINEQCNASRAA
Sbjct 301 SHQQVAFFADVQLVSLITQNPEDAKEFITSTLGDFESASPALQQTLLTFINEQCNASRAA 360
Query 361 KRLHTHRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWRGNKAHALSSPGRRSNSVP 420
KRL THRNT LRR+ESA++LLPRPLDHTSVH+AVALEALQWRG++ + R++ VP
Sbjct 361 KRLFTHRNTLLRRIESAEKLLPRPLDHTSVHIAVALEALQWRGDQTNTSGPRAGRNDGVP 420
Query 421 A 421
A
Sbjct 421 A 421
>gi|699188|gb|AAA62953.1| trx [Mycobacterium leprae]
Length=517
Score = 597 bits (1540), Expect = 9e-169, Method: Compositional matrix adjust.
Identities = 294/421 (70%), Positives = 350/421 (84%), Gaps = 0/421 (0%)
Query 1 VAWQQPSPRIRELIREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRAN 60
+A Q PSPR+RELIREGARIALNP+ EWI++LDRAT AANPAIANDPVLAKVV+ A+RA+
Sbjct 97 MARQHPSPRVRELIREGARIALNPTQEWIDQLDRATFAANPAIANDPVLAKVVRRASRAH 156
Query 61 LVYWAAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAF 120
LV+WA ANLRDPGA VPA+LG EPL MARDLVRRG D +A +IYR G++ WR WM IAF
Sbjct 157 LVHWATANLRDPGAPVPAHLGPEPLTMARDLVRRGRDVLALDIYRVGQYTAWRRWMEIAF 216
Query 121 ELTSDPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDG 180
LTSDPQELRE+L+VSA+S+N+++ ATL IA +Q E DELTRSTHAERLEVV LIL+G
Sbjct 217 TLTSDPQELREILNVSAQSINEYVAATLEAIATHMQLERDELTRSTHAERLEVVDLILEG 276
Query 181 APISPERAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGA 240
AP++ ERAEA+LGY L HTAA+IWSD+LDGDH YLD+AA+ F H V ST+ L VVA A
Sbjct 277 APVTQERAEARLGYRLGLTHTAAVIWSDDLDGDHGYLDQAAEAFSHVVESTQQLIVVASA 336
Query 241 ASRWAWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLR 300
A+RW W+ DA LD+ VQ A+ N AR+AIGT++ G+EGFRRSHLEAL QRTL+RL+
Sbjct 337 ATRWVWLADALALDVPEVQKALLNLSKARVAIGTSSAGIEGFRRSHLEALTAQRTLARLK 396
Query 301 STQRVAFFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAA 360
S Q+VAFFADV++V+LI+QNP+ A EFITSTLGD ESASP LQ LLTFINEQCNASRAA
Sbjct 397 SHQQVAFFADVQLVSLITQNPEDAKEFITSTLGDFESASPALQQTLLTFINEQCNASRAA 456
Query 361 KRLHTHRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWRGNKAHALSSPGRRSNSVP 420
KRL THRNT LRR+ESA++LLPRPLDHTSVH+AVALEALQWRG++ + R++ VP
Sbjct 457 KRLFTHRNTLLRRIESAEKLLPRPLDHTSVHIAVALEALQWRGDQTNTSGPRAGRNDGVP 516
Query 421 A 421
A
Sbjct 517 A 517
>gi|15609507|ref|NP_216886.1| hypothetical protein Rv2370c [Mycobacterium tuberculosis H37Rv]
gi|15841882|ref|NP_336919.1| hypothetical protein MT2439 [Mycobacterium tuberculosis CDC1551]
gi|31793547|ref|NP_856040.1| hypothetical protein Mb2391c [Mycobacterium bovis AF2122/97]
74 more sequence titles
Length=437
Score = 535 bits (1377), Expect = 8e-150, Method: Compositional matrix adjust.
Identities = 257/401 (65%), Positives = 325/401 (82%), Gaps = 0/401 (0%)
Query 5 QPSPRIRELIREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRANLVYW 64
+P+PR RELIR+ A++AL+P+PEW++ELDRAT+AA+P+IA DP LA VV ANR++L+++
Sbjct 5 KPTPRGRELIRQAAKVALHPTPEWLDELDRATLAAHPSIAADPALATVVSRANRSHLIHF 64
Query 65 AAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAFELTS 124
A ANLR PG VPANLG +PLRMARDLVRRGLD A ++YR G+++ W+ W IAF LT+
Sbjct 65 ATANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAFGLTT 124
Query 125 DPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDGAPIS 184
DPQEL ELL + RS ++FI+ATL G+AAQ+Q E+DELTR HAE +V LILDGAPIS
Sbjct 125 DPQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDGAPIS 184
Query 185 PERAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGAASRW 244
+ AEAKLGYPL R+HTAAIIW D+ D + ++LD A F A+G +PL VA AA+RW
Sbjct 185 RQSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASAATRW 244
Query 245 AWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLRSTQR 304
WV+DA LD D + +D+AP ARIA+GTTA G++GFRRSH +AL TQR L+RLRS QR
Sbjct 245 VWVSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLRSQQR 304
Query 305 VAFFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAAKRLH 364
+AFFAD+ M+A++++NPD+A++FITSTLGDLESASP L T +LT+INEQCNASRAA LH
Sbjct 305 LAFFADIHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAAHVLH 364
Query 365 THRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWRGNK 405
THRNT LRRLE+AQRLLPRPLDHT + VAVA+ ALQWRG++
Sbjct 365 THRNTLLRRLETAQRLLPRPLDHTIIQVAVAISALQWRGSQ 405
>gi|298524960|ref|ZP_07012369.1| transcriptional activator protein [Mycobacterium tuberculosis
94_M4241A]
gi|298494754|gb|EFI30048.1| transcriptional activator protein [Mycobacterium tuberculosis
94_M4241A]
gi|339294429|gb|AEJ46540.1| transcriptional activator protein [Mycobacterium tuberculosis
CCDC5079]
gi|339298067|gb|AEJ50177.1| transcriptional activator protein [Mycobacterium tuberculosis
CCDC5180]
Length=432
Score = 524 bits (1350), Expect = 9e-147, Method: Compositional matrix adjust.
Identities = 258/405 (64%), Positives = 315/405 (78%), Gaps = 0/405 (0%)
Query 1 VAWQQPSPRIRELIREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRAN 60
VA ++ SPRI ELIRE ARIALNP+ EW++E DRA +AANP+IA DP LA VV+ +NRA+
Sbjct 12 VALRETSPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAH 71
Query 61 LVYWAAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAF 120
L+++AAANLR+PGA VPANLG EPLRMARDLVR GLD +A +IYR G+++ WR W IAF
Sbjct 72 LIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAF 131
Query 121 ELTSDPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDG 180
LTSDP EL ELLDV R+ N+F++ TL GI ++Q E D+LTR AER ++V L++DG
Sbjct 132 GLTSDPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDG 191
Query 181 APISPERAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGA 240
APIS E AEA+LGYPL R+HTAA+IW D+ GDHS+LDR AD F HA G PL VVAGA
Sbjct 192 APISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGA 251
Query 241 ASRWAWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLR 300
A+RW WV DA G DID + + + P ARIAIG TA G+EGFRRSH +AL T R + RL
Sbjct 252 ATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLE 311
Query 301 STQRVAFFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAA 360
S RVAFF DV+MVAL+++N + A +FI TLG+LESASP L+T LLTFIN+QCNASRAA
Sbjct 312 SPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAA 371
Query 361 KRLHTHRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWRGNK 405
+ L THRNT + RLE+AQRLLPRPL T++HVAVALEA QWR +
Sbjct 372 RLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWREKQ 416
>gi|15840913|ref|NP_335950.1| hypothetical protein MT1500 [Mycobacterium tuberculosis CDC1551]
gi|148822672|ref|YP_001287426.1| transcriptional activator protein [Mycobacterium tuberculosis
F11]
gi|253799498|ref|YP_003032499.1| transcriptional activator [Mycobacterium tuberculosis KZN 1435]
13 more sequence titles
Length=432
Score = 524 bits (1350), Expect = 9e-147, Method: Compositional matrix adjust.
Identities = 258/405 (64%), Positives = 315/405 (78%), Gaps = 0/405 (0%)
Query 1 VAWQQPSPRIRELIREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRAN 60
VA ++ SPRI ELIRE ARIALNP+ EW++E DRA +AANP+IA DP LA VV+ +NRA+
Sbjct 12 VALRETSPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAH 71
Query 61 LVYWAAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAF 120
L+++AAANLR+PGA VPANLG EPLRMARDLVR GLD +A +IYR G+++ WR W IAF
Sbjct 72 LIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAF 131
Query 121 ELTSDPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDG 180
LTSDP EL ELLDV R+ N+F++ TL GI ++Q E D+LTR AER ++V L++DG
Sbjct 132 GLTSDPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDG 191
Query 181 APISPERAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGA 240
APIS E AEA+LGYPL R+HTAA+IW D+ GDHS+LDR AD F HA G PL VVAGA
Sbjct 192 APISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGA 251
Query 241 ASRWAWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLR 300
A+RW WV DA G DID + + + P ARIAIG TA G+EGFRRSH +AL T R + RL
Sbjct 252 ATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLE 311
Query 301 STQRVAFFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAA 360
S RVAFF DV+MVAL+++N + A +FI TLG+LESASP L+T LLTFIN+QCNASRAA
Sbjct 312 SPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAA 371
Query 361 KRLHTHRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWRGNK 405
+ L THRNT + RLE+AQRLLPRPL T++HVAVALEA QWR +
Sbjct 372 RLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWREKQ 416
>gi|57116867|ref|NP_215969.2| transcriptional activator protein [Mycobacterium tuberculosis
H37Rv]
gi|148661245|ref|YP_001282768.1| hypothetical protein MRA_1462 [Mycobacterium tuberculosis H37Ra]
gi|308231843|ref|ZP_07413977.2| transcriptional activator [Mycobacterium tuberculosis SUMu001]
9 more sequence titles
Length=421
Score = 523 bits (1347), Expect = 3e-146, Method: Compositional matrix adjust.
Identities = 257/402 (64%), Positives = 314/402 (79%), Gaps = 0/402 (0%)
Query 1 VAWQQPSPRIRELIREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRAN 60
+A ++ SPRI ELIRE ARIALNP+ EW++E DRA +AANP+IA DP LA VV+ +NRA+
Sbjct 1 MALRETSPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAH 60
Query 61 LVYWAAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAF 120
L+++AAANLR+PGA VPANLG EPLRMARDLVR GLD +A +IYR G+++ WR W IAF
Sbjct 61 LIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAF 120
Query 121 ELTSDPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDG 180
LTSDP EL ELLDV R+ N+F++ TL GI ++Q E D+LTR AER ++V L++DG
Sbjct 121 GLTSDPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDG 180
Query 181 APISPERAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGA 240
APIS E AEA+LGYPL R+HTAA+IW D+ GDHS+LDR AD F HA G PL VVAGA
Sbjct 181 APISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGA 240
Query 241 ASRWAWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLR 300
A+RW WV DA G DID + + + P ARIAIG TA G+EGFRRSH +AL T R + RL
Sbjct 241 ATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLE 300
Query 301 STQRVAFFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAA 360
S RVAFF DV+MVAL+++N + A +FI TLG+LESASP L+T LLTFIN+QCNASRAA
Sbjct 301 SPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAA 360
Query 361 KRLHTHRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWR 402
+ L THRNT + RLE+AQRLLPRPL T++HVAVALEA QWR
Sbjct 361 RLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWR 402
>gi|31792647|ref|NP_855140.1| transcriptional activator protein [Mycobacterium bovis AF2122/97]
gi|121637383|ref|YP_977606.1| putative transcriptional activator protein [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|224989858|ref|YP_002644545.1| putative transcriptional activator protein [Mycobacterium bovis
BCG str. Tokyo 172]
39 more sequence titles
Length=421
Score = 523 bits (1347), Expect = 3e-146, Method: Compositional matrix adjust.
Identities = 257/405 (64%), Positives = 315/405 (78%), Gaps = 0/405 (0%)
Query 1 VAWQQPSPRIRELIREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRAN 60
+A ++ SPRI ELIRE ARIALNP+ EW++E DRA +AANP+IA DP LA VV+ +NRA+
Sbjct 1 MALRETSPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAH 60
Query 61 LVYWAAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAF 120
L+++AAANLR+PGA VPANLG EPLRMARDLVR GLD +A +IYR G+++ WR W IAF
Sbjct 61 LIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAF 120
Query 121 ELTSDPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDG 180
LTSDP EL ELLDV R+ N+F++ TL GI ++Q E D+LTR AER ++V L++DG
Sbjct 121 GLTSDPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDG 180
Query 181 APISPERAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGA 240
APIS E AEA+LGYPL R+HTAA+IW D+ GDHS+LDR AD F HA G PL VVAGA
Sbjct 181 APISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGA 240
Query 241 ASRWAWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLR 300
A+RW WV DA G DID + + + P ARIAIG TA G+EGFRRSH +AL T R + RL
Sbjct 241 ATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLE 300
Query 301 STQRVAFFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAA 360
S RVAFF DV+MVAL+++N + A +FI TLG+LESASP L+T LLTFIN+QCNASRAA
Sbjct 301 SPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAA 360
Query 361 KRLHTHRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWRGNK 405
+ L THRNT + RLE+AQRLLPRPL T++HVAVALEA QWR +
Sbjct 361 RLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWREKQ 405
>gi|340626467|ref|YP_004744919.1| putative transcriptional activator protein [Mycobacterium canettii
CIPT 140010059]
gi|340004657|emb|CCC43801.1| putative transcriptional activator protein [Mycobacterium canettii
CIPT 140010059]
Length=421
Score = 521 bits (1342), Expect = 9e-146, Method: Compositional matrix adjust.
Identities = 256/405 (64%), Positives = 315/405 (78%), Gaps = 0/405 (0%)
Query 1 VAWQQPSPRIRELIREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRAN 60
+A ++ SPRI ELIRE ARIALNP+ EW++E DRA +AANP+IA DP LA VV+ +NRA+
Sbjct 1 MALRETSPRIHELIREAARIALNPTQEWLDEFDRAILAANPSIAADPALATVVKRSNRAH 60
Query 61 LVYWAAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAF 120
L+++AAANLR+PGA VPANLG EPLRMARDLVR GLD +A +IYR G+++ WR W IAF
Sbjct 61 LIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAWRRWTDIAF 120
Query 121 ELTSDPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDG 180
LTS+P EL ELLDV R+ N+F++ TL GI ++Q E D+LTR AER ++V L++DG
Sbjct 121 GLTSNPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRKIVQLLIDG 180
Query 181 APISPERAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGA 240
APIS E AEA+LGYPL R+HTAA+IW D+ GDHS+LDR AD F HA G PL VVAGA
Sbjct 181 APISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPHPLVVVAGA 240
Query 241 ASRWAWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLR 300
A+RW WV DA G DID + + + P ARIAIG TA G+EGFRRSH +AL T R + RL
Sbjct 241 ATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTTARMIIRLE 300
Query 301 STQRVAFFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAA 360
S RVAFF DV+MVAL+++N + A +FI TLG+LESASP L+T LLTFIN+QCNASRAA
Sbjct 301 SPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQQCNASRAA 360
Query 361 KRLHTHRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWRGNK 405
+ L THRNT + RLE+AQRLLPRPL T++HVAVALEA QWR +
Sbjct 361 RLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWREKQ 405
>gi|240167827|ref|ZP_04746486.1| hypothetical protein MkanA1_00825 [Mycobacterium kansasii ATCC
12478]
Length=394
Score = 508 bits (1307), Expect = 1e-141, Method: Compositional matrix adjust.
Identities = 252/396 (64%), Positives = 308/396 (78%), Gaps = 4/396 (1%)
Query 12 ELIREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRANLVYWAAANLRD 71
ELIR+GARI LN PEW +E DR T+AANP++A+DPVLA + + R++L++WAAAN+ +
Sbjct 3 ELIRQGARIVLNAPPEWFDEYDRQTMAANPSVADDPVLAAAARRSIRSSLMHWAAANVSN 62
Query 72 PGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAFELTSDPQELRE 131
PGA VP N+G EPL +ARD+ RRGL+ F R +GWR WM I F+L SDP ELRE
Sbjct 63 PGAPVPPNVGPEPLSIARDMARRGLEPFTF---RPALTVGWRLWMDIGFKLASDPDELRE 119
Query 132 LLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDGAPISPERAEAK 191
LLDVS RS+++FI+AT GIAAQVQ E DEL R THAER EV LILDGAPIS +RAEA+
Sbjct 120 LLDVSFRSISNFIDATAAGIAAQVQQERDELARGTHAERREVTALILDGAPISRQRAEAR 179
Query 192 LGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGAASRWAWVTDAD 251
LGY L+RAH A+IWSDE DGD S LDR AD F A G RPLTV+A AA+RW WV ++
Sbjct 180 LGYALNRAHIGAVIWSDEPDGDLSQLDRVADAFGDAAGFARPLTVIASAATRWVWVPES- 238
Query 252 GLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLRSTQRVAFFADV 311
LD++ V+ AV+ PGARIAIGT A G+EGFRRSHLEAL TQR ++ L+S QRVAFFADV
Sbjct 239 ALDVELVRRAVEGTPGARIAIGTIAKGIEGFRRSHLEALTTQRMVAGLQSRQRVAFFADV 298
Query 312 KMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAAKRLHTHRNTFL 371
+++ALI+QN +AA EFI +TLGD ESA P+L +LT+INEQC+ R K L+THRNT L
Sbjct 299 QLIALITQNREAAEEFIKNTLGDFESAGPELHKTVLTYINEQCSVGRTTKLLYTHRNTLL 358
Query 372 RRLESAQRLLPRPLDHTSVHVAVALEALQWRGNKAH 407
RRLE A++LLPRPL+H+SVHVAVALEALQWRG A+
Sbjct 359 RRLERAEQLLPRPLEHSSVHVAVALEALQWRGKPAN 394
>gi|183982271|ref|YP_001850562.1| transcriptional activator protein [Mycobacterium marinum M]
gi|183175597|gb|ACC40707.1| transcriptional activator protein [Mycobacterium marinum M]
Length=427
Score = 503 bits (1295), Expect = 2e-140, Method: Compositional matrix adjust.
Identities = 250/416 (61%), Positives = 311/416 (75%), Gaps = 2/416 (0%)
Query 7 SPRIRELIREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRANLVYWAA 66
SPR+R+LIRE AR+ALNPS +W+EE DRAT+AA P IA +P LA V+ ANRANL ++AA
Sbjct 7 SPRVRDLIREAARVALNPSQQWLEEFDRATLAAAPPIAENPDLATVISRANRANLRHFAA 66
Query 67 ANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAFELTSDP 126
+NLR+PG VPANLG EPLRMARDLVR GLDT+A ++YR G+++ W+ W I F LT+DP
Sbjct 67 SNLRNPGDPVPANLGAEPLRMARDLVRLGLDTLALDVYRVGQNVAWQRWTDIVFGLTTDP 126
Query 127 QELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDGAPISPE 186
QELRELLDV RS FI+ TL GIAAQ++ EH EL+R+ AER +V L+L+GAPIS +
Sbjct 127 QELRELLDVPFRSAAAFIDTTLAGIAAQMELEHHELSRNICAERRRIVELLLNGAPISRD 186
Query 187 RAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGAASRWAW 246
AE++LGYPL R+HTAAIIWSD DGDH LDRA D FC+AVG L +++ A +RW W
Sbjct 187 SAESRLGYPLDRSHTAAIIWSDRSDGDHRDLDRAVDAFCNAVGCASSLAIMSAATTRWVW 246
Query 247 VTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLRSTQRVA 306
V D D D ++ + P RIAIGTT GV+GFRRSH +AL R L RLRS Q+VA
Sbjct 247 VRDVDVFDCSRIRQVMRELPHVRIAIGTTEPGVDGFRRSHRDALTAARMLIRLRSPQQVA 306
Query 307 FFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAAKRLHTH 366
FF DV+M+AL+++NPD A EFI +TLGD E ASP LQ LLTFI++QCNASRAA+ L+TH
Sbjct 307 FFGDVEMIALLTENPDGADEFIKNTLGDFEEASPALQHTLLTFISQQCNASRAARLLYTH 366
Query 367 RNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWRGNKAH--ALSSPGRRSNSVP 420
RNT + RLE+AQRLLP+PL+ T+V VAVALE LQWR + A S G+ + P
Sbjct 367 RNTLMHRLETAQRLLPKPLEDTTVRVAVALEVLQWRSKQPGNPAASGAGKPDDRTP 422
>gi|183981147|ref|YP_001849438.1| hypothetical protein MMAR_1127 [Mycobacterium marinum M]
gi|183174473|gb|ACC39583.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=406
Score = 499 bits (1285), Expect = 3e-139, Method: Compositional matrix adjust.
Identities = 254/404 (63%), Positives = 316/404 (79%), Gaps = 5/404 (1%)
Query 3 WQQPSPRIRELIREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRANLV 62
WQ PSPR+ ELIR+GA+ L+ S +W++E DR T+AANPAIA+DPVLA+ + + R++L+
Sbjct 3 WQGPSPRVGELIRQGAKAVLDGSQQWLDEYDRVTMAANPAIADDPVLAEATRRSIRSSLI 62
Query 63 YWAAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAFEL 122
+WAAAN+ +PGA V NLG EPL +ARD+VRRGLD F I +T +GWR WMG+AF L
Sbjct 63 HWAAANVSNPGAPVAPNLGPEPLSIARDMVRRGLDPFTFRIAQT---VGWRLWMGVAFGL 119
Query 123 TSDPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDGAP 182
TSDP ELREL +V+ RS+++F+EAT GIAAQ+Q E DEL R THAER EV LILDGAP
Sbjct 120 TSDPDELRELFEVTYRSISEFVEATSAGIAAQMQRERDELARGTHAERREVTALILDGAP 179
Query 183 ISPERAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGAAS 242
IS +RAEA+LGY L+R HTAA+IWSDE DGD + LDR D F A RPLTV+AGAA+
Sbjct 180 ISRQRAEARLGYALNRTHTAAVIWSDEPDGDLNRLDRVVDAFGRAADFARPLTVIAGAAT 239
Query 243 RWAWVTDADG--LDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLR 300
RW WV +A LD++ V+ AV + PGARIAIG A G+EGFRRSHLEAL TQR ++ L
Sbjct 240 RWVWVANAANATLDVEQVEQAVRDVPGARIAIGAAATGIEGFRRSHLEALTTQRMVAGLN 299
Query 301 STQRVAFFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAA 360
S QRVA FAD++++ALI+QNP+AA++FI +TLGD ESA +L +LTF+NEQC+ R
Sbjct 300 SRQRVALFADIQLIALIAQNPEAANDFIKNTLGDFESAGAELHKTVLTFVNEQCSIGRTT 359
Query 361 KRLHTHRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWRGN 404
K L+THRNT LRRL+ AQ+LLPRPLDH+SVHVAVALEALQWRGN
Sbjct 360 KVLYTHRNTLLRRLDRAQQLLPRPLDHSSVHVAVALEALQWRGN 403
>gi|240172052|ref|ZP_04750711.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC
12478]
Length=423
Score = 486 bits (1251), Expect = 3e-135, Method: Compositional matrix adjust.
Identities = 252/399 (64%), Positives = 315/399 (79%), Gaps = 0/399 (0%)
Query 6 PSPRIRELIREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRANLVYWA 65
PS R RELIR GARIALNP+ EW++ LD+AT+ N IA DPVLA V+ A+RANL++WA
Sbjct 20 PSARTRELIRAGARIALNPNQEWLDRLDKATLGKNAVIAEDPVLAAAVRRASRANLLHWA 79
Query 66 AANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAFELTSD 125
AAN+RDPGA V ANLG EPL +ARDLVRRGLD+ IYR G+ + WR W+ I F LT+D
Sbjct 80 AANVRDPGAPVAANLGPEPLALARDLVRRGLDSTTLEIYRVGQDVAWRHWIEIVFGLTAD 139
Query 126 PQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDGAPISP 185
P ELRE+L VS+ S++DFI ATL GIAAQ++ E +EL THAER E+V LILDGA I
Sbjct 140 PDELREVLVVSSLSISDFISATLAGIAAQLKLELNELACGTHAERREIVELILDGAAIGQ 199
Query 186 ERAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGAASRWA 245
ERAEA+LGY L + HTAAI+WSD+ +GDH +LD+AAD +A+GSTR LTV A AA+RW
Sbjct 200 ERAEARLGYSLDQPHTAAILWSDDFEGDHIFLDKAADAVSYALGSTRALTVTATAATRWI 259
Query 246 WVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLRSTQRV 305
WV DA LD+DT++ A+ N PGARIAIG A+G+EGFRRSHL+AL TQR ++RL+S +R+
Sbjct 260 WVPDAVDLDVDTIEKALTNCPGARIAIGPNASGIEGFRRSHLDALATQRMMTRLQSPRRI 319
Query 306 AFFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAAKRLHT 365
A FAD+++V LI+Q+ AA +FI+STLGD SASP+L+ LLT+I +QCN SRAAK L++
Sbjct 320 ALFADIQLVNLITQDASAAEDFISSTLGDFASASPELRATLLTYIRQQCNVSRAAKLLYS 379
Query 366 HRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWRGN 404
HRNT LRRLE+A R+LPRPL + VHVAVALEAL+W GN
Sbjct 380 HRNTLLRRLEAAARMLPRPLPQSYVHVAVALEALEWYGN 418
>gi|289757561|ref|ZP_06516939.1| transcriptional activator protein [Mycobacterium tuberculosis
T85]
gi|289713125|gb|EFD77137.1| transcriptional activator protein [Mycobacterium tuberculosis
T85]
Length=385
Score = 477 bits (1228), Expect = 2e-132, Method: Compositional matrix adjust.
Identities = 234/366 (64%), Positives = 285/366 (78%), Gaps = 0/366 (0%)
Query 37 IAANPAIANDPVLAKVVQTANRANLVYWAAANLRDPGARVPANLGTEPLRMARDLVRRGL 96
+AANP+IA DP LA VV+ +NRA+L+++AAANLR+PGA VPANLG EPLRMARDLVR GL
Sbjct 1 MAANPSIAADPALATVVKRSNRAHLIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGL 60
Query 97 DTVAFNIYRTGEHIGWRFWMGIAFELTSDPQELRELLDVSARSVNDFIEATLTGIAAQVQ 156
D +A +IYR G+++ WR W IAF LTSDP EL ELLDV R+ N+F++ TL GI ++Q
Sbjct 61 DALALDIYRIGQNVAWRRWTDIAFGLTSDPDELHELLDVPFRTANEFVDTTLAGITTEMQ 120
Query 157 SEHDELTRSTHAERLEVVGLILDGAPISPERAEAKLGYPLSRAHTAAIIWSDELDGDHSY 216
E D+LTR AER ++V L++DGAPIS E AEA+LGYPL R+HTAA+IW D+ GDHS+
Sbjct 121 LERDKLTRDVPAERRKIVQLLIDGAPISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSH 180
Query 217 LDRAADLFCHAVGSTRPLTVVAGAASRWAWVTDADGLDIDTVQAAVDNAPGARIAIGTTA 276
LDR AD F HA G PL VVAGAA+RW WV DA G DID + + + P ARIAIG TA
Sbjct 181 LDRVADAFGHAGGCPHPLVVVAGAATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATA 240
Query 277 NGVEGFRRSHLEALITQRTLSRLRSTQRVAFFADVKMVALISQNPDAASEFITSTLGDLE 336
G+EGFRRSH +AL T R + RL S RVAFF DV+MVAL+++N + A +FI TLG+LE
Sbjct 241 PGIEGFRRSHRDALTTARMIIRLESPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLE 300
Query 337 SASPDLQTALLTFINEQCNASRAAKRLHTHRNTFLRRLESAQRLLPRPLDHTSVHVAVAL 396
SASP L+T LLTFIN+QCNASRAA+ L THRNT + RLE+AQRLLPRPL T++HVAVAL
Sbjct 301 SASPALKTTLLTFINQQCNASRAARLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVAL 360
Query 397 EALQWR 402
EA QWR
Sbjct 361 EAQQWR 366
>gi|118618591|ref|YP_906923.1| transcriptional regulator [Mycobacterium ulcerans Agy99]
gi|118570701|gb|ABL05452.1| transcriptional regulator [Mycobacterium ulcerans Agy99]
Length=417
Score = 464 bits (1195), Expect = 1e-128, Method: Compositional matrix adjust.
Identities = 227/399 (57%), Positives = 294/399 (74%), Gaps = 0/399 (0%)
Query 7 SPRIRELIREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRANLVYWAA 66
SPR+RELIR ARIALNP+ +W++ELDR T+AANPA+++DP L +++ ANRANL+++A
Sbjct 10 SPRMRELIRHTARIALNPTQQWLDELDRTTLAANPALSDDPALVEIISRANRANLIHFAV 69
Query 67 ANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAFELTSDP 126
A LRDPG VPAN G EPLRMA++L+ RGL+ +A +IYR ++ W W IAF LTS+P
Sbjct 70 AILRDPGGPVPANFGPEPLRMAQELLNRGLEALAADIYRIAHNVAWERWTDIAFGLTSNP 129
Query 127 QELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDGAPISPE 186
QELR+LLDV+ RS NDFI+AT+ GI AQ+ E+D LTR A+R +VV IL GAP++ E
Sbjct 130 QELRDLLDVAFRSSNDFIDATIAGIPAQLPLEYDALTREVSAQRRKVVEQILGGAPVNRE 189
Query 187 RAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGAASRWAW 246
RAEA+LGY L RAHTAAI+WSDE DGDH LD+AAD FC A+G PL VV +A+RW W
Sbjct 190 RAEAQLGYLLDRAHTAAIVWSDEPDGDHGQLDQAADAFCTALGCRAPLIVVTNSATRWVW 249
Query 247 VTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLRSTQRVA 306
V DA D +Q + AP R+ +G T G+EGFRRSH +A TQR L+RL + QR A
Sbjct 250 VNDAATPVGDRIQQVLTYAPTVRLVVGNTRRGIEGFRRSHRDAQTTQRMLTRLGAPQRTA 309
Query 307 FFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAAKRLHTH 366
FAD +MV L++Q+ + EFI TLG+ +SASP L LLT+IN+QCNA+R AK L+ H
Sbjct 310 HFADTQMVELLTQDLEGVDEFIECTLGEFQSASPVLHAILLTYINQQCNAARTAKALYIH 369
Query 367 RNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWRGNK 405
RNT + RLE+A RLLP+P++ V +AVALE LQWR ++
Sbjct 370 RNTLVHRLETAHRLLPQPVEANIVRIAVALEVLQWRSDR 408
>gi|183982113|ref|YP_001850404.1| transcriptional regulator [Mycobacterium marinum M]
gi|183175439|gb|ACC40549.1| transcriptional regulator [Mycobacterium marinum M]
Length=405
Score = 464 bits (1193), Expect = 2e-128, Method: Compositional matrix adjust.
Identities = 226/396 (58%), Positives = 294/396 (75%), Gaps = 0/396 (0%)
Query 10 IRELIREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRANLVYWAAANL 69
+RELIR ARIALNP+ +W++ELDR T+AANPA+++DP L +++ ANRANL+++A A L
Sbjct 1 MRELIRHTARIALNPTQQWLDELDRTTLAANPALSDDPALVEIISRANRANLIHFAVAIL 60
Query 70 RDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAFELTSDPQEL 129
RDPG VPAN G EPLRMA++L+ RGL+ +A +IYR ++ W W IAF LTS+PQEL
Sbjct 61 RDPGGPVPANFGPEPLRMAQELLNRGLEALAADIYRIAHNVAWERWTDIAFGLTSNPQEL 120
Query 130 RELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDGAPISPERAE 189
R+LLDV+ RS NDFI+AT+ GI AQ+ E+D LTR A+R +VV IL GAP++ ERAE
Sbjct 121 RDLLDVAFRSSNDFIDATIAGIPAQLPLEYDALTREVSAQRRKVVEQILGGAPVNRERAE 180
Query 190 AKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGAASRWAWVTD 249
A+LGY L RAHTAAI+WSDE DGDH LD+AAD FC A+G PL VV +A+RW WV D
Sbjct 181 AQLGYLLDRAHTAAIVWSDEPDGDHGQLDQAADAFCTALGCRAPLIVVTNSATRWVWVND 240
Query 250 ADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLRSTQRVAFFA 309
A D +Q + +AP R+A+G T G+EGFRRSH +A TQR L+RL + QR A FA
Sbjct 241 AATPVGDRIQQVLTDAPTVRLAVGNTRRGIEGFRRSHRDAQTTQRMLTRLGAPQRTAHFA 300
Query 310 DVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAAKRLHTHRNT 369
D +MV L++Q+ + EFI TLG+ +SASP L LLT+IN+QCNA+R AK L+ HRNT
Sbjct 301 DTQMVELLTQDLEGVDEFIECTLGEFQSASPVLHATLLTYINQQCNAARTAKALYIHRNT 360
Query 370 FLRRLESAQRLLPRPLDHTSVHVAVALEALQWRGNK 405
+ RLE+A RLLP+P++ VH+AVALE LQWR ++
Sbjct 361 LVHRLETAHRLLPQPVEANIVHIAVALEVLQWRSDR 396
>gi|289758492|ref|ZP_06517870.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|289714056|gb|EFD78068.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
Length=504
Score = 455 bits (1171), Expect = 5e-126, Method: Compositional matrix adjust.
Identities = 219/352 (63%), Positives = 282/352 (81%), Gaps = 0/352 (0%)
Query 5 QPSPRIRELIREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRANLVYW 64
+P+PR RELIR+ A++AL+P+PEW++ELDRAT+AA+P+IA DP LA VV ANR++L+++
Sbjct 5 KPTPRGRELIRQAAKVALHPTPEWLDELDRATLAAHPSIAADPALATVVSRANRSHLIHF 64
Query 65 AAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAFELTS 124
A ANLR PG VPANLG +PLRMARDLVRRGLD A ++YR G+++ W+ W IAF LT+
Sbjct 65 ATANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAFGLTT 124
Query 125 DPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDGAPIS 184
DPQEL ELL + RS ++FI+ATL G+AAQ+Q E+DELTR HAE +V LILDGAPIS
Sbjct 125 DPQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDGAPIS 184
Query 185 PERAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGAASRW 244
+ AEAKLGYPL R+HTAAIIW D+ D + ++LD A F A+G +PL VA AA+RW
Sbjct 185 RQSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASAATRW 244
Query 245 AWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLRSTQR 304
WV+DA LD D + +D+AP ARIA+GTTA G++GFRRSH +AL TQR L+RLRS QR
Sbjct 245 VWVSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLRSQQR 304
Query 305 VAFFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNA 356
+AFFAD+ M+A++++NPD+A++FITSTLGDLESASP L T +LT+INEQCNA
Sbjct 305 LAFFADIHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNA 356
>gi|289745203|ref|ZP_06504581.1| transcriptional activator protein [Mycobacterium tuberculosis
02_1987]
gi|289685731|gb|EFD53219.1| transcriptional activator protein [Mycobacterium tuberculosis
02_1987]
Length=388
Score = 455 bits (1171), Expect = 6e-126, Method: Compositional matrix adjust.
Identities = 223/350 (64%), Positives = 271/350 (78%), Gaps = 0/350 (0%)
Query 53 VQTANRANLVYWAAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGW 112
V +NRA+L+++AAANLR+PGA VPANLG EPLRMARDLVR GLD +A +IYR G+++ W
Sbjct 20 VVCSNRAHLIHFAAANLRNPGAPVPANLGPEPLRMARDLVRVGLDALALDIYRIGQNVAW 79
Query 113 RFWMGIAFELTSDPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLE 172
R W IAF LTSDP EL ELLDV R+ N+F++ TL GI ++Q E D+LTR AER +
Sbjct 80 RRWTDIAFGLTSDPDELHELLDVPFRTANEFVDTTLAGITTEMQLERDKLTRDVPAERRK 139
Query 173 VVGLILDGAPISPERAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTR 232
+V L++DGAPIS E AEA+LGYPL R+HTAA+IW D+ GDHS+LDR AD F HA G
Sbjct 140 IVQLLIDGAPISREHAEARLGYPLDRSHTAAVIWGDQAQGDHSHLDRVADAFGHAGGCPH 199
Query 233 PLTVVAGAASRWAWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALIT 292
PL VVAGAA+RW WV DA G DID + + + P ARIAIG TA G+EGFRRSH +AL T
Sbjct 200 PLVVVAGAATRWVWVKDAPGFDIDLIHEVLHDIPDARIAIGATAPGIEGFRRSHRDALTT 259
Query 293 QRTLSRLRSTQRVAFFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINE 352
R + RL S RVAFF DV+MVAL+++N + A +FI TLG+LESASP L+T LLTFIN+
Sbjct 260 ARMIIRLESPHRVAFFTDVEMVALLTENAEGADDFIQRTLGNLESASPALKTTLLTFINQ 319
Query 353 QCNASRAAKRLHTHRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWR 402
QCNASRAA+ L THRNT + RLE+AQRLLPRPL T++HVAVALEA QWR
Sbjct 320 QCNASRAARLLFTHRNTLMNRLETAQRLLPRPLADTTIHVAVALEAQQWR 369
>gi|294633995|ref|ZP_06712551.1| regulatory protein [Streptomyces sp. e14]
gi|292829991|gb|EFF88344.1| regulatory protein [Streptomyces sp. e14]
Length=425
Score = 434 bits (1116), Expect = 2e-119, Method: Compositional matrix adjust.
Identities = 229/405 (57%), Positives = 290/405 (72%), Gaps = 4/405 (0%)
Query 1 VAWQQPSPRIRELIREGARIALNPSPEWIEELDRATIAANPA--IANDPVLAKVVQTANR 58
V+W+ PSPR+RELIR GA IAL+P EW++ELD AT+ IA+DPVLA + ANR
Sbjct 21 VSWKTPSPRVRELIRRGAEIALHPPDEWLDELDAATLTGETKRQIASDPVLAAGTRRANR 80
Query 59 ANLVYWAAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGI 118
+NL++WAAAN+RDPG VPAN PL ARD+VRRGLD A + YR GE + R W I
Sbjct 81 SNLLFWAAANVRDPGEPVPANDTETPLATARDIVRRGLDESALDAYRAGESVALRLWTQI 140
Query 119 AFELTSDPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLIL 178
A LTSDP ELRELLDVS RS++ F++ TL+ IA ++++E DELTR THAER E V L+L
Sbjct 141 ACSLTSDPGELRELLDVSLRSISAFVDDTLSAIATRMRAERDELTRGTHAERRETVSLLL 200
Query 179 DGAPISPERAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVA 238
+GAPI+ ERAE++LGY L HTAAI+W+D D D LDRAAD A G TRPL+V+A
Sbjct 201 EGAPITRERAESRLGYRLGATHTAAIVWTDAADPDLGRLDRAADALAEAAGHTRPLSVLA 260
Query 239 GAASRWAWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSR 298
GAA+RW WV D ++ A+D P RIA+G+TA G++GFRRSHL+AL TQ+ L+R
Sbjct 261 GAATRWVWVHGRP--DTGQLRTALDRLPDVRIAVGSTAPGLDGFRRSHLDALTTQQMLAR 318
Query 299 LRSTQRVAFFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASR 358
L S R+A ++++VAL++ +P++A F+T TLGDLE+A P++ L FI EQCNA+R
Sbjct 319 LTSPSRLASHHEIELVALLTSDPESADRFVTRTLGDLETAPPEVAETLRVFIAEQCNATR 378
Query 359 AAKRLHTHRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWRG 403
AA RL THRNT LRRL A RLLPRPL V V ALE L+WRG
Sbjct 379 AAARLFTHRNTLLRRLARADRLLPRPLAEHPVEVGAALEILRWRG 423
>gi|118617459|ref|YP_905791.1| transcriptional activator protein [Mycobacterium ulcerans Agy99]
gi|118569569|gb|ABL04320.1| transcriptional activator protein [Mycobacterium ulcerans Agy99]
Length=336
Score = 400 bits (1028), Expect = 2e-109, Method: Compositional matrix adjust.
Identities = 196/330 (60%), Positives = 246/330 (75%), Gaps = 0/330 (0%)
Query 7 SPRIRELIREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRANLVYWAA 66
SPR+R+LIRE AR+ALNPS +W+EE DRAT+A P IA +P LA V+ ANRANL ++AA
Sbjct 7 SPRVRDLIREAARVALNPSQQWLEEFDRATLATAPPIAENPDLATVISRANRANLRHFAA 66
Query 67 ANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAFELTSDP 126
+NLR+PG VPANLG EPLRMARDLVR GLDT+A ++YR G+++ W+ W I F LT+DP
Sbjct 67 SNLRNPGDPVPANLGAEPLRMARDLVRLGLDTLALDVYRVGQNVAWQRWTDIVFGLTTDP 126
Query 127 QELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDGAPISPE 186
QELRELLDV RS FI+ TL GIAAQ++ EH EL+R+ AER +V L+L+GAPIS +
Sbjct 127 QELRELLDVPFRSAVAFIDTTLAGIAAQMELEHHELSRNICAERRRIVELLLNGAPISRD 186
Query 187 RAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGAASRWAW 246
AE++LGYPL R+HTAAIIWSD +GDH LDRA D FC+AVG L +++ A +RW W
Sbjct 187 SAESRLGYPLDRSHTAAIIWSDRPNGDHRDLDRAVDAFCNAVGCASSLAIMSAATTRWVW 246
Query 247 VTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLRSTQRVA 306
V D D D ++ + P RIAIGTT GV+GFRRS +AL R L RLRS Q+VA
Sbjct 247 VRDVDVFDCSHIRQVMRELPHVRIAIGTTEPGVDGFRRSRRDALTAARMLIRLRSPQQVA 306
Query 307 FFADVKMVALISQNPDAASEFITSTLGDLE 336
FF DV+M+AL+++NPD A EFI +TLGD E
Sbjct 307 FFGDVEMIALLTENPDGADEFIKNTLGDFE 336
>gi|288916819|ref|ZP_06411192.1| putative transcriptional regulator, PucR family [Frankia sp.
EUN1f]
gi|288351704|gb|EFC85908.1| putative transcriptional regulator, PucR family [Frankia sp.
EUN1f]
Length=410
Score = 400 bits (1027), Expect = 3e-109, Method: Compositional matrix adjust.
Identities = 215/403 (54%), Positives = 281/403 (70%), Gaps = 4/403 (0%)
Query 1 VAWQQPSPRIRELIREGARIALNPSPEWIEELDRATIA--ANPAIANDPVLAKVVQTANR 58
++W PS RIREL+R GA + L+P+P+W++ELD AT+A A +A DPVLA ++ +NR
Sbjct 1 MSWDLPSSRIRELLRRGAELVLHPNPDWLDELDAATLAGPARQQVAEDPVLAAAIRRSNR 60
Query 59 ANLVYWAAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGI 118
ANL YWAAAN+R PG RVPA+LG PL +ARDLVRRGLD YR+G+ + R+W+ I
Sbjct 61 ANLRYWAAANIRAPGERVPADLGDVPLAVARDLVRRGLDDAMLGAYRSGQSVALRYWIEI 120
Query 119 AFELTSDPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLIL 178
F LTSDP+ELR LLDVS RS+ +IE T+ IAAQ+ E +LT THAER E V L+L
Sbjct 121 VFTLTSDPEELRALLDVSCRSIATYIEDTVDAIAAQMDRERADLTHGTHAERREAVTLLL 180
Query 179 DGAPISPERAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVA 238
DGAP+SP+RA+ +LGY L AH AA+IWSD+ D D + LDRAADLF A G RPLTV+A
Sbjct 181 DGAPLSPQRAQQRLGYRLEGAHWAAVIWSDDPDIDLAALDRAADLFAVAAGDPRPLTVLA 240
Query 239 GAASRWAWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSR 298
AA+RW WV D+ + A P ARIAIG ++GFRRSH +AL QR L+R
Sbjct 241 SAATRWVWVHGEP--DLARLHATAAEIPAARIAIGRRRVDLDGFRRSHHDALTVQRMLAR 298
Query 299 LRSTQRVAFFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASR 358
L + +++A +ADV++VAL++ + + A +F+ LGDL +A P+L+ A+ TF+ CNA+
Sbjct 299 LGAPRQIATYADVELVALLTTDRERADQFVAGALGDLATAPPELREAVRTFVAAGCNATA 358
Query 359 AAKRLHTHRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQW 401
AA RL+THRNT LRRL A+RLLP PL + VA ALE W
Sbjct 359 AAGRLYTHRNTLLRRLARAERLLPVPLADNLIPVAAALEVQHW 401
>gi|29827930|ref|NP_822564.1| hypothetical protein SAV_1389 [Streptomyces avermitilis MA-4680]
gi|29605031|dbj|BAC69099.1| hypothetical protein [Streptomyces avermitilis MA-4680]
Length=425
Score = 392 bits (1008), Expect = 5e-107, Method: Compositional matrix adjust.
Identities = 208/401 (52%), Positives = 285/401 (72%), Gaps = 2/401 (0%)
Query 6 PSPRIRELIREGARIALNPSPEWIEELDRATIAAN--PAIANDPVLAKVVQTANRANLVY 63
PS RIRELI GA +A EW+ E++ AT++A A+A+DP L ++ +RAN+++
Sbjct 24 PSDRIRELIGRGAAVAARAPEEWLREIEDATLSAEYLQALADDPDLTAQIRRTSRANVLH 83
Query 64 WAAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAFELT 123
WA N+R PGA VPAN+G E L AR+LVRRGL+ A YR+G++ W WM IAFELT
Sbjct 84 WATWNVRSPGAPVPANVGPEALATARELVRRGLNDSALQSYRSGQNAAWLRWMSIAFELT 143
Query 124 SDPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDGAPI 183
SDP ELRELLDVS RS++ F++AT+ ++AQ+Q+E DELTR T+AER E V L+L+GAPI
Sbjct 144 SDPAELRELLDVSTRSISAFVDATIAAVSAQIQAERDELTRGTNAERREAVTLLLNGAPI 203
Query 184 SPERAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGAASR 243
P+RA A+LGY + + HTAAI+WSD + D L+RAAD A G +R L+V AGAA
Sbjct 204 HPDRASARLGYRVEQTHTAAIVWSDAAESDLGDLERAADALAKAAGVSRFLSVTAGAAML 263
Query 244 WAWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLRSTQ 303
W W+ A + ++ +D+ P AR A+G+T +GVEGFRRSHL+A+ TQR ++RL + +
Sbjct 264 WVWLPSAALPATNRLERHLDSHPTARAALGSTGHGVEGFRRSHLDAMTTQRMMARLHTVR 323
Query 304 RVAFFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAAKRL 363
VA F V++VAL+++ P A +F+ TLG L + +P+L+ A+ +I+E+CNA+RAA RL
Sbjct 324 SVARFETVEIVALVTREPQQADQFVRRTLGGLATGAPELREAVAAYIHEECNATRAAARL 383
Query 364 HTHRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWRGN 404
THRNT LRRLE AQRLLP PL +V +AVAL+ L WRG+
Sbjct 384 FTHRNTLLRRLERAQRLLPHPLAGNTVRIAVALDVLHWRGD 424
>gi|296393206|ref|YP_003658090.1| PucR family transcriptional regulator [Segniliparus rotundus
DSM 44985]
gi|296180353|gb|ADG97259.1| putative transcriptional regulator, PucR family [Segniliparus
rotundus DSM 44985]
Length=410
Score = 368 bits (945), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 194/406 (48%), Positives = 260/406 (65%), Gaps = 3/406 (0%)
Query 2 AWQQPSPRIRELIREGARIALNPSPEWIEELDRATIAANP--AIANDPVLAKVVQTANRA 59
+W PS RI+EL+R GA IAL P WIEEL AT+ A+A+DPVLA+ V+ N A
Sbjct 4 SWPVPSERIQELMRRGATIALTPQAHWIEELHTATLGGQRMRAVADDPVLAEAVRRTNLA 63
Query 60 NLVYWAAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIA 119
N ++WA++N PG RVP NL L +RD+VRRGLD A + YRTG+ + WR WM I
Sbjct 64 NWLHWASSNAARPGERVPPNLSPVVLETSRDMVRRGLDQTALDTYRTGQSVAWRRWMDIC 123
Query 120 FELTSDPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILD 179
F LTSDP+EL ELLD+S RS+ F++ T+ +A++ E D+L R +HA+RL V LIL+
Sbjct 124 FGLTSDPRELHELLDLSERSIRTFLDDTIDATSARIAEERDQLVRGSHADRLAAVSLILE 183
Query 180 GAPISPERAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAG 239
GAPI RAE +LGY L+ H AA++W S L+ A+ F G+ R LTV+A
Sbjct 184 GAPIPRARAEEQLGYQLTGPHVAAVVWGSA-STPASRLETVAEAFTRDSGAARRLTVLAS 242
Query 240 AASRWAWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRL 299
+A+ W W+ A VQA + + P + IG ++GFRRSHL+A+ TQR L+RL
Sbjct 243 SATLWLWLPVAAAPACAHVQAHIADVPDVWLGIGRPGRDIDGFRRSHLDAIATQRMLTRL 302
Query 300 RSTQRVAFFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRA 359
S +VA + D+ +VAL+S +P A EF+ LG L +A PD++ +LT+I EQCN SRA
Sbjct 303 TSPHQVAHYDDIALVALLSSDPARADEFVRDALGGLLAAEPDIRDTVLTYIREQCNTSRA 362
Query 360 AKRLHTHRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWRGNK 405
A+RL+THRNT +RRL A LLP PL V VA ALE ++WRG
Sbjct 363 AERLYTHRNTVIRRLARADELLPHPLPRNIVAVAAALEIVRWRGQS 408
>gi|289443891|ref|ZP_06433635.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289416810|gb|EFD14050.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
Length=311
Score = 355 bits (911), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 179/307 (59%), Positives = 228/307 (75%), Gaps = 9/307 (2%)
Query 5 QPSPRIRELIREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRANLVYW 64
+P+PR RELIR+ A++AL+P+PEW++ELDRAT+AA+P+IA DP LA VV ANR++L+++
Sbjct 5 KPTPRGRELIRQAAKVALHPTPEWLDELDRATLAAHPSIAADPALATVVSRANRSHLIHF 64
Query 65 AAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAFELTS 124
A ANLR PG VPANLG +PLRMARDLVRRGLD A ++YR G+++ W+ W IAF LT+
Sbjct 65 ATANLRKPGQPVPANLGPDPLRMARDLVRRGLDASALDVYRVGQNVAWQRWTEIAFGLTT 124
Query 125 DPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDGAPIS 184
DPQEL ELL + RS ++FI+ATL G+AAQ+Q E+DELTR HAE +V LILDGAPIS
Sbjct 125 DPQELHELLTLPFRSASEFIDATLAGLAAQMQLEYDELTRDVHAEHRRIVELILDGAPIS 184
Query 185 PERAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGAASRW 244
+ AEAKLGYPL R+HTAAIIW D+ D + ++LD A F A+G +PL VA AA+RW
Sbjct 185 RQSAEAKLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASAATRW 244
Query 245 AWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHL---------EALITQRT 295
WV+DA LD D + +D+AP ARIA+GTTA G++GFRRSH A I QR
Sbjct 245 VWVSDAATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHATPGHPTHAGPASIPQRW 304
Query 296 LSRLRST 302
LS ST
Sbjct 305 LSSRTST 311
>gi|296141540|ref|YP_003648783.1| PucR family transcriptional regulator [Tsukamurella paurometabola
DSM 20162]
gi|296029674|gb|ADG80444.1| putative transcriptional regulator, PucR family [Tsukamurella
paurometabola DSM 20162]
Length=405
Score = 343 bits (880), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 186/402 (47%), Positives = 263/402 (66%), Gaps = 5/402 (1%)
Query 2 AWQQPSPRIRELIREGARIALNPSPEWIEELDRATIAA--NPAIANDPVLAKVVQTANRA 59
+W +PS ++++LIR GA IA NP EW+ EL AT+A IA DP LA++V+ +N A
Sbjct 4 SWPEPSEQVKDLIRRGAEIASNPPKEWVAELHDATLAGAIMQGIAADPTLAELVRQSNMA 63
Query 60 NLVYWAAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIA 119
++ WA NLR PGARVP N E L +ARDLVRRGLD + YRTG + WR WM +
Sbjct 64 AMLLWATHNLRHPGARVPPNTDDEALAVARDLVRRGLDLHGIDSYRTGLNAAWRRWMELC 123
Query 120 FELTSDPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILD 179
F LT+DP ELRELL ++ S++ +I+ T+T IA ++ +EH++LT T+A+RL + L+L+
Sbjct 124 FTLTADPDELRELLSITWHSMSTYIDDTITAIAIRMAAEHEQLTTGTNADRLATISLVLE 183
Query 180 GAPISPERAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAG 239
GAPIS RAE +LGY L+ HTAA++W+ GD S LD AA G+ RPLTVVA
Sbjct 184 GAPISRVRAEQQLGYRLTGPHTAAVVWT---SGDTSDLDAAAQALARHAGTPRPLTVVAS 240
Query 240 AASRWAWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRL 299
A++ W W+ + + + + P R+A+G + ++GFRRSHL+A QR L+RL
Sbjct 241 ASALWVWLPGTVVPNSSDLARELADHPEVRVALGRPGDDLDGFRRSHLDAGSAQRLLTRL 300
Query 300 RSTQRVAFFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRA 359
S +RVA + D+ +++LI+ + A EF+ TLG+L +A D + + T+++EQ N SR
Sbjct 301 GSPRRVARYDDIALISLITADTGKADEFVRDTLGELLTADQDTRDTVATYVSEQFNTSRT 360
Query 360 AKRLHTHRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQW 401
A+RL+THRNT +RRL A LLPRPL VAVAL+ L+W
Sbjct 361 AERLYTHRNTVIRRLTRADELLPRPLAENPTGVAVALDVLRW 402
>gi|289705749|ref|ZP_06502133.1| conserved hypothetical protein [Micrococcus luteus SK58]
gi|289557589|gb|EFD50896.1| conserved hypothetical protein [Micrococcus luteus SK58]
Length=414
Score = 339 bits (869), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 191/405 (48%), Positives = 260/405 (65%), Gaps = 3/405 (0%)
Query 3 WQQPSPRIRELIREGARIALNPSPEWIEELDRATIAAN--PAIANDPVLAKVVQTANRAN 60
W PSP +R L+R+ A +AL P PEW ++D A +A IA DPVLA+ ++ AN
Sbjct 11 WPAPSPPVRRLLRQAAELALRPRPEWTADIDAAALAGTRMEVIAADPVLAEGIRRTTTAN 70
Query 61 LVYWAAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAF 120
L++WAAAN++ PG RVP NL + L ARDL RRGL A + YRTG+ + R WM I F
Sbjct 71 LLHWAAANVKAPGRRVPPNLEPDNLETARDLARRGLGRTALDSYRTGQSLASRRWMAICF 130
Query 121 ELTSDPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDG 180
ELT D L ELLDVS S+ FI+ TL + A +++E D+L R +HAER VV I++G
Sbjct 131 ELTQDLSLLHELLDVSLLSIATFIDDTLDAVFAVLEAERDQLHRGSHAERRAVVARIVEG 190
Query 181 APISPERAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGA 240
APIS RAE +LG+PL+ H AA++W+ L+GD + L+ AA+ A G+ R LTVVA +
Sbjct 191 APISRARAETQLGHPLTGPHVAAVVWT-TLEGDPAALEAAAEALAQAGGTARRLTVVASS 249
Query 241 ASRWAWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLR 300
AS W W+ A +D V + + P +AIG + V GFRRSHL+A QR ++RL
Sbjct 250 ASHWLWLPLAAAPAVDDVASRLAGHPEVSVAIGRPGHDVVGFRRSHLDAAAAQRMMTRLA 309
Query 301 STQRVAFFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAA 360
S QR+A + DV++V +++ P A ++T LGDL +A+ ++ A+LT + E+ N SR A
Sbjct 310 SPQRIARYQDVQLVDVLTAEPVRADGYVTDVLGDLATAAQEIHDAVLTLVQERFNTSRTA 369
Query 361 KRLHTHRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWRGNK 405
+RLHTHRNT +RRL A LLPRPL V VA AL+ LQWRG +
Sbjct 370 ERLHTHRNTVIRRLARADELLPRPLAENPVDVAAALQVLQWRGAR 414
>gi|284990852|ref|YP_003409406.1| putative PucR family transcriptional regulator [Geodermatophilus
obscurus DSM 43160]
gi|284064097|gb|ADB75035.1| putative transcriptional regulator, PucR family [Geodermatophilus
obscurus DSM 43160]
Length=438
Score = 335 bits (858), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 201/430 (47%), Positives = 260/430 (61%), Gaps = 27/430 (6%)
Query 1 VAWQQPSPRIRELIREGARIALNPSPEWIEELDRATIAANPA--IANDPVLAKVVQTANR 58
V W SPR+REL R GA +AL+P +W+EEL A + +A DPVLA + N
Sbjct 8 VRWPDTSPRVRELFRRGAEVALDPRADWVEELHAAALGGQRMRPVAEDPVLAAATRRVNL 67
Query 59 ANLVYWAAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGI 118
ANL++WAAAN++ PG RVP N G E L ARDLVRRGLD + YR + + WR WM I
Sbjct 68 ANLLHWAAANVQHPGRRVPPNTGPESLDTARDLVRRGLDESVLDAYRAAQGVAWRRWMQI 127
Query 119 AFELTSDPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLIL 178
FELT+DP ELRELLDVSA S+ FIE T+ + ++++E DELTR HAER V L+L
Sbjct 128 CFELTADPAELRELLDVSALSIATFIEDTVAATSERMRAERDELTRGAHAERRAAVTLLL 187
Query 179 DGAPISPERAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVA 238
+GAPIS RAEA+LGY L+ HTAA++WS L+ AA+ A G+ LTVVA
Sbjct 188 EGAPISRARAEAQLGYGLAGPHTAAVVWSGSGTASEQ-LEAAAEAVVRASGAAHRLTVVA 246
Query 239 GAASRWAWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSR 298
AA+ W W+ A D + + P R+A+G V+GFRRSHL+A TQR ++R
Sbjct 247 SAAALWVWLPVATAPDAGKLAGELAAHPDVRVAVGRPGRDVDGFRRSHLDAATTQRMVAR 306
Query 299 LR--------------STQR----------VAFFADVKMVALISQNPDAASEFITSTLGD 334
L+ + QR VA + DV++VAL++ P A EF+ TLGD
Sbjct 307 LQKDPAAPHHSQARGGTLQRGHPTRQVPCQVARYEDVQLVALLTAEPTLADEFLADTLGD 366
Query 335 LESASPDLQTALLTFINEQCNASRAAKRLHTHRNTFLRRLESAQRLLPRPLDHTSVHVAV 394
L A + + A+LT++ E + SR A+RL+THRNT LRRL A LLPRPL V VA
Sbjct 367 LLHAEAETRHAVLTYVRELGSTSRTAERLYTHRNTVLRRLARADELLPRPLAQNVVAVAA 426
Query 395 ALEALQWRGN 404
ALE L+WRG
Sbjct 427 ALEVLRWRGT 436
>gi|78059959|ref|YP_366534.1| putative regulator of polyketide synthase expression [Burkholderia
sp. 383]
gi|77964509|gb|ABB05890.1| putative regulator of polyketide synthase expression [Burkholderia
sp. 383]
Length=394
Score = 326 bits (835), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 169/389 (44%), Positives = 244/389 (63%), Gaps = 2/389 (0%)
Query 14 IREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRANLVYWAAANLRDPG 73
+R+GA IALN EW++ELD+ +A +P + +DPVLA V+ NR L++WA ANL +P
Sbjct 1 MRQGAEIALNVQTEWLQELDKENVATSPTM-SDPVLAAAVRRINRNGLIHWATANLENPC 59
Query 74 ARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAFELTSDPQELRELL 133
A V L + L A++LVRRGL + F R+ + + W+ WM +AF LT DP ELRE L
Sbjct 60 APVSRFLSADMLSSAQELVRRGLTDLVFVAARSSQSVVWQRWMDLAFTLTQDPVELREFL 119
Query 134 DVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDGAPISPERAEAKLG 193
VS+RS+ FI+ + G+A +++E + R THA+R E+V I++G I + A +LG
Sbjct 120 AVSSRSIAAFIDTNMVGMAEFMRAEREARLRGTHADRRELVTQIVEGTTIGAQEASRRLG 179
Query 194 YPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGAASRWAWVT-DADG 252
Y L + H AAI+WS+E D + L+RAAD G+ L VVA A+ W W D
Sbjct 180 YTLEQRHHAAIVWSEEADIELGLLERAADALAQCAGTRNALVVVANTATLWVWTYHDGKP 239
Query 253 LDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLRSTQRVAFFADVK 312
LD+ ++Q A++ PG +A+ T +G+EGFR HL+AL TQR L RL + V +
Sbjct 240 LDMPSLQRAINALPGVHMAVATAGSGMEGFRHGHLDALATQRLLGRLHAGVGVVHADSMS 299
Query 313 MVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAAKRLHTHRNTFLR 372
++AL++ + ++ +F+T+TLG+L SA L+ AL F+ E C+ + AA++ H HRNT LR
Sbjct 300 LIALMTNHMESLQQFVTNTLGNLASADKSLRDALRAFLAEGCSVTDAAEKTHVHRNTLLR 359
Query 373 RLESAQRLLPRPLDHTSVHVAVALEALQW 401
RLE A+ LLPRPL +HVA ALE L W
Sbjct 360 RLERAESLLPRPLAQQRLHVAAALEVLHW 388
>gi|289570513|ref|ZP_06450740.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289544267|gb|EFD47915.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
Length=247
Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 141/215 (66%), Positives = 175/215 (82%), Gaps = 0/215 (0%)
Query 191 KLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGAASRWAWVTDA 250
KLGYPL R+HTAAIIW D+ D + ++LD A F A+G +PL VA AA+RW WV+DA
Sbjct 1 KLGYPLDRSHTAAIIWYDDPDDNQNHLDHTARAFGRALGCPQPLIAVASAATRWVWVSDA 60
Query 251 DGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLRSTQRVAFFAD 310
LD D + +D+AP ARIA+GTTA G++GFRRSH +AL TQR L+RLRS QR+AFFAD
Sbjct 61 ATLDTDRIHQVLDHAPHARIAVGTTARGIDGFRRSHRDALATQRMLARLRSQQRLAFFAD 120
Query 311 VKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAAKRLHTHRNTF 370
+ M+A++++NPD+A++FITSTLGDLESASP L T +LT+INEQCNASRAA LHTHRNT
Sbjct 121 IHMIAVLTENPDSAADFITSTLGDLESASPQLLTTVLTYINEQCNASRAAHVLHTHRNTL 180
Query 371 LRRLESAQRLLPRPLDHTSVHVAVALEALQWRGNK 405
LRRLE+AQRLLPRPLDHT + VAVA+ ALQWRG++
Sbjct 181 LRRLETAQRLLPRPLDHTIIQVAVAISALQWRGSQ 215
>gi|254240668|ref|ZP_04933990.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|12698406|gb|AAK01520.1| putative transcriptional activator [Pseudomonas aeruginosa]
gi|126194046|gb|EAZ58109.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
Length=417
Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 153/402 (39%), Positives = 229/402 (57%), Gaps = 2/402 (0%)
Query 2 AWQQPSPRIRELIREGARIALNPSPEWIEELDRATIAA--NPAIANDPVLAKVVQTANRA 59
+W +PS +REL+R+GA +A PEW+E L++A ++ + + DPV+ + ANRA
Sbjct 7 SWPRPSEAVRELMRKGAELAQTLPPEWVERLNQALFSSPEDAKLLEDPVILAACRRANRA 66
Query 60 NLVYWAAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIA 119
L++WA ANL+ PG V + + + AR+L RRGL + N+ R+ ++ W WM +A
Sbjct 67 ELLHWANANLQRPGEPVQPYVSADMVDTARELARRGLSELLMNVARSTQNTAWELWMKMA 126
Query 120 FELTSDPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILD 179
F LT DP+ L E L+VS+RS+++FI++ + + + E ++ +V +L+
Sbjct 127 FNLTQDPRVLEEFLEVSSRSISEFIDSNMRVVTQIILEEKSAQAHDDPIDKRSLVSRLLE 186
Query 180 GAPISPERAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAG 239
G + E+ +LGY L + H A ++W + D + L+ A G+ PL V AG
Sbjct 187 GRDVDTEQFGRRLGYSLFQKHYAGLVWCESPDAEIRLLEDVARTLAQLTGTAAPLIVFAG 246
Query 240 AASRWAWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRL 299
A+ W W A LD++ +Q G R AIG+ GV GFRRSHLEAL TQR + RL
Sbjct 247 PATLWVWSHAAKPLDLNLLQGIALRFSGIRAAIGSPGTGVNGFRRSHLEALTTQRLMGRL 306
Query 300 RSTQRVAFFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRA 359
VA V+MV+L++Q+ AA +F+ STLG L + LQ +L F+ CN ++
Sbjct 307 AGAPAVATIDQVRMVSLMTQDDRAARQFVLSTLGRLATEPSVLQRSLHAFLANGCNVTQT 366
Query 360 AKRLHTHRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQW 401
A+ L THRNT LRRLE AQ LLP L + +A ALE + W
Sbjct 367 AEALGTHRNTLLRRLERAQDLLPVRLADHRIQIAAALELVIW 408
>gi|26989534|ref|NP_744959.1| hypothetical protein PP_2815 [Pseudomonas putida KT2440]
gi|24984409|gb|AAN68423.1|AE016475_2 conserved hypothetical protein [Pseudomonas putida KT2440]
Length=417
Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 154/401 (39%), Positives = 231/401 (58%), Gaps = 2/401 (0%)
Query 3 WQQPSPRIRELIREGARIALNPSPEWIEELDRATIAA--NPAIANDPVLAKVVQTANRAN 60
W +PS +REL+R+GA +A EW+E L+++ ++ + + DPV+ + ANRA
Sbjct 8 WPRPSETVRELMRKGAELAQALPAEWVERLNQSLFSSPEDARLLEDPVILAACRRANRAE 67
Query 61 LVYWAAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAF 120
L++WA ANL+ PG V + + + AR+L RRGL + N+ R+ ++ W WM +AF
Sbjct 68 LLHWANANLQRPGEPVEPYVSADMVDTARELARRGLSELLMNVARSTQNAAWDLWMKMAF 127
Query 121 ELTSDPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDG 180
LT DP L E L+VS+RS+++FI++ + + + E ++ +V +LDG
Sbjct 128 SLTQDPAVLEEFLEVSSRSISEFIDSNMRVVTQIILEEKSAQAHDDPIDKRSLVSRLLDG 187
Query 181 APISPERAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGA 240
+ E+ +LGY L++ H A ++WS+ D + L+ A G+ PL V AG
Sbjct 188 RDVDAEQFGRRLGYSLAQRHHACLVWSETPDAEIRPLEDMARALAQLTGTVAPLIVFAGP 247
Query 241 ASRWAWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLR 300
A+ WAW A LD++ +Q P R AIG+ G+ GFRRSHLEAL TQR + RL
Sbjct 248 ATLWAWSNAAKPLDLNLLQDVARQFPKIRAAIGSAGAGMNGFRRSHLEALTTQRLMGRLA 307
Query 301 STQRVAFFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAA 360
+ VA V+MV+L++Q+ AA +F+ STLG L + LQ +L F+ CN ++ A
Sbjct 308 GSPAVATIDQVRMVSLMTQDARAARQFVLSTLGRLATEPTVLQHSLHAFLANGCNITQTA 367
Query 361 KRLHTHRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQW 401
+ L THRNT LRRLE AQ LLP PL + +A ALE + W
Sbjct 368 EVLGTHRNTLLRRLERAQDLLPIPLADHRIQIAAALELVIW 408
>gi|313110892|ref|ZP_07796735.1| hypothetical protein PA39016_002840001 [Pseudomonas aeruginosa
39016]
gi|310883237|gb|EFQ41831.1| hypothetical protein PA39016_002840001 [Pseudomonas aeruginosa
39016]
Length=399
Score = 272 bits (696), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 148/390 (38%), Positives = 220/390 (57%), Gaps = 2/390 (0%)
Query 14 IREGARIALNPSPEWIEELDRATIAA--NPAIANDPVLAKVVQTANRANLVYWAAANLRD 71
+R+GA +A PEW+E L++A ++ + + DPV+ + ANRA L++WA ANL+
Sbjct 1 MRKGAELAQALPPEWVERLNQALFSSPEDAKLLEDPVILAACRRANRAELLHWANANLQR 60
Query 72 PGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAFELTSDPQELRE 131
PG V + + + AR+L RRGL + N+ R+ ++ W WM +AF LT DP+ L E
Sbjct 61 PGEPVQPYVSADMVDTARELARRGLSELLMNVARSTQNTAWELWMKMAFNLTQDPRVLEE 120
Query 132 LLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDGAPISPERAEAK 191
L+VS+RS+++FI++ + + + E ++ +V +LDG + E+ +
Sbjct 121 FLEVSSRSISEFIDSNMRVVTQIILEEKSAQAHDDPIDKRSLVSRLLDGRDVDTEQFGRR 180
Query 192 LGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGAASRWAWVTDAD 251
LGY L + H A ++W + D + L+ A G+ PL V AG A+ W W A
Sbjct 181 LGYSLFQKHYAGLVWCESPDAEIRLLEDVARTLAQLTGTAAPLIVFAGPATLWVWSHAAK 240
Query 252 GLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLRSTQRVAFFADV 311
LD++ +Q G R AIG+ GV GFRRSHLEAL TQR + RL VA V
Sbjct 241 PLDLNLLQGIALRFSGIRAAIGSPGTGVNGFRRSHLEALTTQRLMGRLAGAPAVATIDQV 300
Query 312 KMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAAKRLHTHRNTFL 371
+MV+L++Q+ AA +F+ STLG L + LQ +L F+ CN ++ A+ L THRNT L
Sbjct 301 RMVSLMTQDDRAARQFVLSTLGRLATEPSVLQRSLHAFLANGCNVTQTAEALGTHRNTLL 360
Query 372 RRLESAQRLLPRPLDHTSVHVAVALEALQW 401
RRLE AQ LLP L + +A ALE + W
Sbjct 361 RRLERAQDLLPVRLADHRIQIAAALELVIW 390
>gi|107101671|ref|ZP_01365589.1| hypothetical protein PaerPA_01002715 [Pseudomonas aeruginosa
PACS2]
Length=399
Score = 272 bits (695), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 148/390 (38%), Positives = 220/390 (57%), Gaps = 2/390 (0%)
Query 14 IREGARIALNPSPEWIEELDRATIAA--NPAIANDPVLAKVVQTANRANLVYWAAANLRD 71
+R+GA +A PEW+E L++A ++ + + DPV+ + ANRA L++WA ANL+
Sbjct 1 MRKGAELAQALPPEWVERLNQALFSSPEDAKLLEDPVILAACRRANRAELLHWANANLQR 60
Query 72 PGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAFELTSDPQELRE 131
PG V + + + AR+L RRGL + N+ R+ ++ W WM +AF LT DP+ L E
Sbjct 61 PGEPVQPYVSADMVDTARELARRGLSELLMNVARSTQNTAWELWMKMAFNLTQDPRVLEE 120
Query 132 LLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDGAPISPERAEAK 191
L+VS+RS+++FI++ + + + E ++ +V +LDG + E+ +
Sbjct 121 FLEVSSRSISEFIDSNMRVVTQIILEEKSAQAHDDPIDKRSLVSRLLDGRDVDTEQFGRR 180
Query 192 LGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGAASRWAWVTDAD 251
LGY L + H A ++W + D + L+ A G+ PL V AG A+ W W A
Sbjct 181 LGYSLFQKHYAGLVWCESPDAEIRLLEDVARTLAQLTGTAAPLIVFAGPATLWVWSHAAK 240
Query 252 GLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLRSTQRVAFFADV 311
LD++ +Q G R AIG+ GV GFRRSHLEAL TQR + RL VA V
Sbjct 241 PLDLNLLQGIALRFSGIRAAIGSPGTGVNGFRRSHLEALTTQRLMGRLAGAPAVATIDQV 300
Query 312 KMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAAKRLHTHRNTFL 371
+MV+L++Q+ AA +F+ STLG L + LQ +L F+ CN ++ A+ L THRNT L
Sbjct 301 RMVSLMTQDDRAARQFVLSTLGRLATEPSVLQRSLHAFLANGCNVTQTAEALGTHRNTLL 360
Query 372 RRLESAQRLLPRPLDHTSVHVAVALEALQW 401
RRLE AQ LLP L + +A ALE + W
Sbjct 361 RRLERAQDLLPVRLADHRIQIAAALELVIW 390
>gi|218891802|ref|YP_002440669.1| hypothetical protein PLES_30801 [Pseudomonas aeruginosa LESB58]
gi|218772028|emb|CAW27807.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58]
Length=399
Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 147/390 (38%), Positives = 220/390 (57%), Gaps = 2/390 (0%)
Query 14 IREGARIALNPSPEWIEELDRATIAA--NPAIANDPVLAKVVQTANRANLVYWAAANLRD 71
+R+GA +A PEW+E L++A ++ + + DPV+ + ANRA L++WA ANL+
Sbjct 1 MRKGAELAQTLPPEWVERLNQALFSSPEDAKLLEDPVILAACRRANRAELLHWANANLQR 60
Query 72 PGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAFELTSDPQELRE 131
PG V + + + AR+L RRGL + N+ R+ ++ W WM +AF LT DP+ L E
Sbjct 61 PGEPVQPYVSADMVDTARELARRGLSELLMNVARSTQNTAWELWMKMAFNLTQDPRVLEE 120
Query 132 LLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDGAPISPERAEAK 191
L+VS+RS+++FI++ + + + E ++ +V +L+G + E+ +
Sbjct 121 FLEVSSRSISEFIDSNMRVVTQIILEEKSAQAHDDPIDKRSLVSRLLEGRDVDTEQFGRR 180
Query 192 LGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGAASRWAWVTDAD 251
LGY L + H A ++W + D + L+ A G+ PL V AG A+ W W A
Sbjct 181 LGYSLFQKHYAGLVWCESPDAEIRLLEDVARTLAQLTGTAAPLIVFAGPATLWVWSHAAK 240
Query 252 GLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLRSTQRVAFFADV 311
LD++ +Q G R AIG+ GV GFRRSHLEAL TQR + RL VA V
Sbjct 241 PLDLNLLQGIALRFSGIRAAIGSPGTGVNGFRRSHLEALTTQRLMGRLAGAPAVATIDQV 300
Query 312 KMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAAKRLHTHRNTFL 371
+MV+L++Q+ AA +F+ STLG L + LQ +L F+ CN ++ A+ L THRNT L
Sbjct 301 RMVSLMTQDDRAARQFVLSTLGRLATEPSVLQRSLHAFLANGCNVTQTAEALGTHRNTLL 360
Query 372 RRLESAQRLLPRPLDHTSVHVAVALEALQW 401
RRLE AQ LLP L + +A ALE + W
Sbjct 361 RRLERAQDLLPVRLADHRIQIAAALELVIW 390
>gi|296140575|ref|YP_003647818.1| PucR family transcriptional regulator [Tsukamurella paurometabola
DSM 20162]
gi|296028709|gb|ADG79479.1| putative transcriptional regulator, PucR family [Tsukamurella
paurometabola DSM 20162]
Length=406
Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 158/403 (40%), Positives = 232/403 (58%), Gaps = 3/403 (0%)
Query 2 AWQQPSPRIRELIREGARIALNPSPEWIEELDRATIAANP--AIANDPVLAKVVQTANRA 59
+W +P RI LIRE A L S ++EL+ A AA A+ DP L + NR
Sbjct 4 SWPRPERRIAALIREVAERLLASSDAAVDELNAAAHAAADYRAVLEDPQLVAADRRMNRT 63
Query 60 NLVYWAAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIA 119
N+++W +ANL+DPGARVP + + L++ARD+VRRGLD +R +H W W+
Sbjct 64 NMLHWLSANLQDPGARVPPSNDPDILQLARDVVRRGLDMHDLGSWRGAQHGAWSAWVDEC 123
Query 120 FELTSDPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILD 179
F +T D ELREL+ +S RS++ FI+ ++ + V+ E EL R AER V L+L+
Sbjct 124 FAVTDDLDELRELMKISERSMSTFIDDSIAALDEYVEQERAELARGASAERHATVQLLLE 183
Query 180 GAPISPERAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAG 239
GAPI RAE++LGY L+ +H AAI WSD D A + A G+ R LT+ A
Sbjct 184 GAPIGRARAESRLGYALTGSHVAAITWSDCADAAAGLDAAAEAMM-RACGAPRRLTLNAS 242
Query 240 AASRWAWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRL 299
A++ W W ++ + A + + G +A G ++GFRRSHL+A QR L+R+
Sbjct 243 ASALWVWAPAGSVPTVEDMDAVLADRTGIHVAFGRPGEDLDGFRRSHLDATAAQRVLARV 302
Query 300 RSTQRVAFFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRA 359
S +RV + DV ++++++ + A +F++ TLGDL +A L+ LT++ E+ NAS A
Sbjct 303 GSARRVVRYEDVALISVLTADMAQADQFVSDTLGDLATADATLRDTALTYVRERFNASAA 362
Query 360 AKRLHTHRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWR 402
A +L+THRNT RRL +LLP PL + V AL +Q R
Sbjct 363 ADKLYTHRNTVERRLARVDQLLPAPLADNAASVVAALMLVQLR 405
>gi|54023238|ref|YP_117480.1| hypothetical protein nfa12710 [Nocardia farcinica IFM 10152]
gi|54014746|dbj|BAD56116.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=397
Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 154/398 (39%), Positives = 220/398 (56%), Gaps = 5/398 (1%)
Query 10 IRELIREGARIALNPSPEWIEELDRATIAANP---AIANDPVLAKVVQTANRANLVYWAA 66
+REL R+ A L E + E++ AT+ +P AIA DPVLA+ L W
Sbjct 1 MRELFRDVAETMLARHTEILAEMEEATLR-DPRYLAIAQDPVLAESSDRVGVFALKKWLT 59
Query 67 ANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAFELTSDP 126
+N+ PGARVP E AR++V RGL T +R G+++ WR+W+ F + D
Sbjct 60 SNIAAPGARVPPPDSEETRTYARNVVLRGLTTDEVTSWRAGQYVVWRWWLAECFRVARDL 119
Query 127 QELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDGAPISPE 186
EL L+ VSA S+ ++ + +A QV +E +R V L+L GA I+P
Sbjct 120 DELESLVAVSACSLTTAVDDAIAALAQQVDDVREEFAGGAQLQRYATVELLLQGADIAPA 179
Query 187 RAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGAASRWAW 246
RAEA+LGY L+ +H A++W+D + D L+ ++ A G+ LTVVAG A++W W
Sbjct 180 RAEAQLGYALTGSHIGAVVWTDS-ERDAHALEAVSEQLMRACGAASRLTVVAGTAAQWLW 238
Query 247 VTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLRSTQRVA 306
+ ++ + P AR+A+G A+G+ GFRR+HL+A QR LSRLRS V
Sbjct 239 IPAKTVPPAADLEEMLSRHPRARVALGRAASGINGFRRTHLDAAAAQRLLSRLRSNLAVI 298
Query 307 FFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAAKRLHTH 366
+ DV+M+ L+S + +F+T LGD E+ASP L +LT++ E N S A RL+TH
Sbjct 299 RYEDVQMIDLMSADVSQLDQFVTDVLGDFEAASPVLHQTVLTYVEEGLNRSSTADRLYTH 358
Query 367 RNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWRGN 404
RNT RRL LLPRP V VA AL L+ RG+
Sbjct 359 RNTIDRRLARVDELLPRPFADRPVEVATALTVLRIRGS 396
>gi|326381991|ref|ZP_08203684.1| putative transcriptional regulator, PucR family protein [Gordonia
neofelifaecis NRRL B-59395]
gi|326199417|gb|EGD56598.1| putative transcriptional regulator, PucR family protein [Gordonia
neofelifaecis NRRL B-59395]
Length=405
Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 170/405 (42%), Positives = 236/405 (59%), Gaps = 15/405 (3%)
Query 4 QQPSPRIRELIREGARIALNPSPEWIEELDRATI--AANPAIANDPVLAKVVQTANRANL 61
++PS + LIR G + LN WI +++ A + A + D L +V N+ NL
Sbjct 9 REPSAAVAALIRAGVEVVLNAPEAWIADMNDAAMHPAGMERVVVDLDLREVALRINQGNL 68
Query 62 VYWAAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAFE 121
+WA +NL PGARV NL E + RDLVRRG D A + +RT ++ WR WM I F
Sbjct 69 NHWAQSNLERPGARVTVNLTEETVGFIRDLVRRGFDAGALDSFRTAQNTAWRLWMQICFG 128
Query 122 LTSDPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDGA 181
LT DP+ LRELL+V++ S+ FI+ T+ +A Q+ EL THA+R VV LIL+GA
Sbjct 129 LTHDPEALRELLEVTSVSIATFIDDTVGELARQIDVARAELAGDTHAQRRAVVALILEGA 188
Query 182 PISPERAEAKLGYPLSRAHTAAIIWSDELDGDHSY----LDRAADLFCHAVGSTRPLTVV 237
P++P RAE +L Y + +A +I GD L+ A + A G TR LTV+
Sbjct 189 PVAPARAELQLRYSVEGPQSAMVI-----SGDAGVAPDDLEAACEAIMVASGVTRRLTVL 243
Query 238 AGAASRWAWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLS 297
AGA+ W W+ + TV++A+ + P RIA G+ +G EGFRRSH EAL ++ L+
Sbjct 244 AGASELWVWLPT----ERLTVESALADHPHVRIAAGSAGHGREGFRRSHFEALEGKQLLN 299
Query 298 RLRSTQRVAFFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNAS 357
RL S R A + D+ ++A ++ + +FI TLGDL A L ++ + QCNAS
Sbjct 300 RLGSATRFAAYDDLALLAAMTSDLTRLDDFIAHTLGDLALADRGLHDSMRAWFAAQCNAS 359
Query 358 RAAKRLHTHRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWR 402
AA L+THRNT +R + AQ LLPRPLD +V VA ALEAL+WR
Sbjct 360 AAAAHLYTHRNTVVRHVARAQELLPRPLDANAVAVAAALEALRWR 404
>gi|169629742|ref|YP_001703391.1| hypothetical protein MAB_2657c [Mycobacterium abscessus ATCC
19977]
gi|169241709|emb|CAM62737.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=422
Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 148/406 (37%), Positives = 234/406 (58%), Gaps = 5/406 (1%)
Query 3 WQQPSPRIRELIREGARIALNPSPEWIEELDRATIAANP---AIANDPVLAKVVQTANRA 59
W S +R LIRE A L S E +L A++ +P IA+DPV+A+V +
Sbjct 19 WPDASEPVRRLIRELAEKMLARSGEVAGDLTAASLE-DPRYRTIADDPVIAEVDARLTVS 77
Query 60 NLVYWAAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIA 119
NL +W +N+ +PG RV G+ ARD+V RGL T +R + +GW++W+
Sbjct 78 NLKHWLTSNISEPGHRVRPATGSAMRTYARDVVLRGLTTDDIQSWRAVQRVGWKWWLAAC 137
Query 120 FELTSDPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILD 179
F++T D ++L EL++V++ S+ F++ ++ +A V+ +EL + +R V L+L
Sbjct 138 FQVTDDKEQLCELIEVTSNSLTTFVDDSIAELAEHVRRVREELAGGSQLQRYATVELLLQ 197
Query 180 GAPISPERAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAG 239
GA I+P RAEA+LGY L+ +H A++W D + + + L+RA++ A G+ R LTVVAG
Sbjct 198 GADIAPARAEAQLGYALTGSHIGAVVWVDS-EKEIAALERASEQVMRACGADRRLTVVAG 256
Query 240 AASRWAWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRL 299
+ W W+ + + ++ G R+A+G A G+ GFRR+H++A QR L+RL
Sbjct 257 TVALWLWIPAKTTPTVAVLMDSLGRRSGVRVALGRAATGMAGFRRTHMDAAAAQRLLARL 316
Query 300 RSTQRVAFFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRA 359
S V + DV ++ L+S +P +A +F+T LG+ +SASP L +LT++ E N +
Sbjct 317 GSPLSVVRYEDVHLMDLLSADPASADQFVTDVLGEFQSASPVLHQTVLTYVEEALNRTST 376
Query 360 AKRLHTHRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWRGNK 405
A+RL+THRNT RRL LLP+P + VA AL L+ R +
Sbjct 377 AERLYTHRNTIDRRLARVDELLPKPFARNPIEVAAALTLLRVRAGR 422
>gi|289574129|ref|ZP_06454356.1| LOW QUALITY PROTEIN: transcriptional regulator [Mycobacterium
tuberculosis K85]
gi|289538560|gb|EFD43138.1| LOW QUALITY PROTEIN: transcriptional regulator [Mycobacterium
tuberculosis K85]
Length=115
Score = 235 bits (600), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 114/115 (99%), Positives = 115/115 (100%), Gaps = 0/115 (0%)
Query 1 VAWQQPSPRIRELIREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRAN 60
+AWQQPSPRIRELIREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRAN
Sbjct 1 MAWQQPSPRIRELIREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRAN 60
Query 61 LVYWAAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFW 115
LVYWAAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFW
Sbjct 61 LVYWAAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFW 115
>gi|226359516|ref|YP_002777294.1| CdaR family transcriptional regulator [Rhodococcus opacus B4]
gi|226238001|dbj|BAH48349.1| putative CdaR family transcriptional regulator [Rhodococcus opacus
B4]
Length=409
Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 150/403 (38%), Positives = 219/403 (55%), Gaps = 5/403 (1%)
Query 3 WQQPSPRIRELIREGARIALNPSPEWIEELDRATIAANP---AIANDPVLAKVVQTANRA 59
W PS +R LIR+ A + E ++EL A++A +P IA DPVLA+ + A
Sbjct 6 WPTPSESVRTLIRDIAESLIPRYHEVVDELVAASLA-DPRYHEIAADPVLAEADARLSVA 64
Query 60 NLVYWAAANLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIA 119
NL +W +N+ DPG RVP + E ARD+V R L T +R + W +W+
Sbjct 65 NLKHWLTSNIADPGRRVPTHASQEIKIYARDVVLRELTTDDVASWRATHRVTWHWWLNEC 124
Query 120 FELTSDPQELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILD 179
F T D L EL++VSA S+ F++ ++ +A +Q+ +EL +R V L+L
Sbjct 125 FAATDDTDVLHELVEVSANSLTAFVDDSIAALADYIQAVREELAGGPQLQRYATVELLLH 184
Query 180 GAPISPERAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAG 239
G+ I P RAEA+LGY L+ +H AIIW+D + D L+ AA+ A G+ LTVVAG
Sbjct 185 GSNIEPSRAEAQLGYALTGSHVGAIIWADS-EEDVGGLEPAAEQIMRACGAVSRLTVVAG 243
Query 240 AASRWAWVTDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRL 299
A+ W W+ ++ V + + G R+A G + V GFRR+H++A QR L+RL
Sbjct 244 TAALWLWMPSRLVPEVSDVADRIKHIKGIRVAFGRMSASVAGFRRTHMDAAAAQRLLARL 303
Query 300 RSTQRVAFFADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRA 359
S + + DV++V L+S +P A++++ LG+ A P L +LT + N S A
Sbjct 304 NSRLSIVRYEDVQLVDLMSADPALAAQYVLDVLGEFADADPVLHQTVLTCVQAGFNRSSA 363
Query 360 AKRLHTHRNTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWR 402
A+RL+THRNT RRL LLP+PL V AL L R
Sbjct 364 AERLYTHRNTIDRRLARIDELLPKPLASDPAGVVAALTLLNIR 406
>gi|240170335|ref|ZP_04748994.1| hypothetical protein MkanA1_13565 [Mycobacterium kansasii ATCC
12478]
Length=415
Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 147/395 (38%), Positives = 219/395 (56%), Gaps = 5/395 (1%)
Query 8 PRIRELIREGARIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRANLVYWAAA 67
P + EL+ E A + LN + E+D A + P + D +A + +NRAN V A
Sbjct 8 PAVVELVGEVADLMLNDIDHLVAEMDAAVVEIAPVMGADAAIAAEMSASNRANAVRLLTA 67
Query 68 NLRDPGARVPANLGTEPLRMARDLVRRGLDT-VAFNIYRTGEHIGWRFWMGIAFELTSDP 126
R G PA++ E L + R +VRRG+D V F YR G+++ W+ +M A ++ +
Sbjct 68 LARRDGRGAPADVPPEALDVVRTVVRRGIDLDVIFQAYRRGQNVAWQRFMVYAAQVVAPG 127
Query 127 QELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDGAPISPE 186
EL LL+V+++ + +++ + + A Q E +EL A R E V LILDGAPI
Sbjct 128 PELVALLEVTSQLMFSYVDQVIGRVIADAQHEREELLGGAMARRTETVRLILDGAPIDRR 187
Query 187 RAEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGAASRWAW 246
RA +LGY L R HTA ++W++ L+ AA L A + PLT+ +G A+ WAW
Sbjct 188 RASERLGYELDRRHTALVLWAEPRGEIQGVLESAATLLARAARARPPLTLPSGTATLWAW 247
Query 247 VTDADGLDIDTVQAAVDNA-PGARIAIGTTANGVEGFRRSHLEALITQRTLSRLRSTQRV 305
+ +D ++ A+ +A P R+A+G T G+ GFRRSH AL+ QR L +R+
Sbjct 248 LGTNATPAMDALRDAIRSADPTVRVAVGPTQPGITGFRRSHAAALVIQRLLGGHPGGERI 307
Query 306 AFFADVKMVALISQNPDAASEFITSTLGDLESASPD---LQTALLTFINEQCNASRAAKR 362
AF D+++ AL +QN D A+EF+ +TLG L + +P L+ L F++E NA RA R
Sbjct 308 AFHRDLEVTALAAQNQDQAAEFVATTLGPLAADTPGAARLRETLRVFLDEAENAPRAGIR 367
Query 363 LHTHRNTFLRRLESAQRLLPRPLDHTSVHVAVALE 397
LHTHRNT L+R+ A LL + V +ALE
Sbjct 368 LHTHRNTVLQRVARATELLGHHPGERRLAVELALE 402
>gi|111020760|ref|YP_703732.1| hypothetical protein RHA1_ro03774 [Rhodococcus jostii RHA1]
gi|110820290|gb|ABG95574.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=402
Score = 215 bits (548), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 136/364 (38%), Positives = 209/364 (58%), Gaps = 7/364 (1%)
Query 27 EWIEELDRATIAANPAIANDPVLAKVVQTANRANLVYWAAANLRDPGARVPANLGTEPLR 86
+++E++D + PA+ D +A + +NRAN+ R G P ++ E L
Sbjct 14 QFVEDMDAEEVKLAPALGADAAIAAEMSASNRANVARLLTTLARRDGRAAPIDVPPEALD 73
Query 87 MARDLVRRGLDT-VAFNIYRTGEHIGWRFWMGIAFELTSDPQELRELLDVSARSVNDFIE 145
+ R +VRRG D V F+ YR G+++ W+ ++ A + +L ELL+ ++ + ++++
Sbjct 74 VVRTVVRRGSDLDVIFHAYRRGQNLVWQSFIAHAARIVPPGPQLVELLEAFSQHLFEYVD 133
Query 146 ATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDGAPISPERAEAKLGYPLSRAHTAAII 205
+ + A Q E +E+ A R+E + LILDGAPI RA +LGY L+R HTA ++
Sbjct 134 HVIGRVIADAQREREEVLGGALARRVETIRLILDGAPIDSRRAGERLGYELARRHTALVL 193
Query 206 WSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGAASRWAWV-TDADGLDIDTVQAAVDN 264
W+ L+ AA A G+ PLT+ AG ++ WAW TD+D +DT++ A+
Sbjct 194 WAQPPGEVQGALESAATSLARAAGARPPLTLPAGTSTLWAWFGTDSDPA-LDTLRDALTR 252
Query 265 A-PGARIAIGTTANGVEGFRRSHLEALITQRTLSRLRSTQRVAFFADVKMVALISQNPDA 323
A P R+A+G T G+ GFRRSH AL QR LS S R+A + D+++ AL +QNPD
Sbjct 253 AQPNVRVAVGPTQPGITGFRRSHDAALTIQRLLSGHPSGARLALYRDLEVTALAAQNPDR 312
Query 324 ASEFITSTLGDLESASPD---LQTALLTFINEQCNASRAAKRLHTHRNTFLRRLESAQRL 380
A++F+ +TLG L + +P L+ L F++E NA RAA RLHTHRNT L+R+ A L
Sbjct 313 AADFVATTLGPLAADTPSAARLRETLRVFLDEADNAPRAAVRLHTHRNTVLQRVARATEL 372
Query 381 LPRP 384
L P
Sbjct 373 LGHP 376
>gi|304319834|ref|YP_003853477.1| hypothetical protein PB2503_01282 [Parvularcula bermudensis HTCC2503]
gi|303298737|gb|ADM08336.1| hypothetical protein PB2503_01282 [Parvularcula bermudensis HTCC2503]
Length=403
Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 135/395 (35%), Positives = 195/395 (50%), Gaps = 7/395 (1%)
Query 9 RIRELIREGA-RIALNPSPEWIEELDRATIAANPAIANDPVLAKVVQTANRANLVYWAAA 67
R+ L+RE A R LNP ++ +D A + A DP+L ++ ANR N+ YW
Sbjct 7 RLAYLMREAATRARLNPDKS-LKMIDDAVLNAIDQ-TQDPLLVAQIRLANRLNMDYWLNR 64
Query 68 NLRDPGARVPANLGTEPLRMARDLVRRGLDTVAFNIYRTGEHIGWRFWMGIAFELTSDPQ 127
+ P NL E LR + R GL A +R G++ + WM + FELT DP+
Sbjct 65 AFQAPEKIPEPNLSPEILRSVHENARVGLGETALEAFRAGQNAAFMIWMEVVFELTDDPE 124
Query 128 ELRELLDVSARSVNDFIEATLTGIAAQVQSEHDELTRSTHAERLEVVGLILDGAPISPER 187
EL+ +LD S RS++ F+E T I + ++ + + A+R +V +L+G
Sbjct 125 ELKAVLDHSLRSISSFVEETARAIRIENAKGLEDAAQGSPAQRRVLVERLLEGETFDAPL 184
Query 188 AEAKLGYPLSRAHTAAIIWSDELDGDHSYLDRAADLFCHAVGSTRPLTVVAGAASRWAWV 247
A +LGY L + H A I W D ++GD L A L + + W W
Sbjct 185 AARRLGYRLDQRHQAVIFWIDRMEGDPDILADFATRLTTLTPGKSILRIDEDKSRLWLWF 244
Query 248 TDADGLDIDTVQAAVDNAPGARIAIGTTANGVEGFRRSHLEALITQRTLSRLRSTQRVAF 307
TD ID+ A +AIG +GVEGFRRSHL+A +R ++ +R+A
Sbjct 245 TD----KIDSKMLASLRPETVYVAIGPVLSGVEGFRRSHLDARTAERLIAEGPGDRRIAT 300
Query 308 FADVKMVALISQNPDAASEFITSTLGDLESASPDLQTALLTFINEQCNASRAAKRLHTHR 367
+ D ++ AL+ N +F+ LG L +A P +L + N SR A+ L HR
Sbjct 301 YEDTRLAALMGTNSALRDQFLEEVLGPLSTAPPHFAQSLRAYFLHGENVSRTAEALAIHR 360
Query 368 NTFLRRLESAQRLLPRPLDHTSVHVAVALEALQWR 402
NT +R LE A+ LLPRPL + VA ALEAL WR
Sbjct 361 NTLMRHLEGAEDLLPRPLSEARIEVAAALEALHWR 395
>gi|297197571|ref|ZP_06914968.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
gi|197716669|gb|EDY60703.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
Length=409
Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 122/364 (34%), Positives = 191/364 (53%), Gaps = 1/364 (0%)
Query 38 AANPAIANDPVLAKVVQTANRANLVYWAAANLRDPGARVPANLGTEPLRMARDLVRRGLD 97
A + +DP +++ + A RA +WA + DP V L ++ + ++RD R G +
Sbjct 41 AIDARFGSDPSISEAIGEATRAYSHHWARSMYEDPWRDVEPLLTSQIVNISRDGYRWGEE 100
Query 98 TVAFNIYRTGEHIGWRFWMGIAFELTSDPQELRELLDVSARSVNDFIEATLTGIAAQVQS 157
+ W M IAF L + L+ LD ++RS++ +++ T+T + ++
Sbjct 101 DTFRASNYAAQQAMWSILMRIAFSLCDETAVLQPALDRASRSLSLWVDRTVTAVIDILEQ 160
Query 158 EHDELTRSTHAERLEVVGLILDGAPISPERAEAKLGYPLSRAHTAAIIWSDELDGDHSYL 217
E L+ H RLE+V LIL G P+ + LGYPLS H I+W+ D + L
Sbjct 161 ERAALSGDEHVRRLELVNLILGGTPVPVTGVDQSLGYPLSARHLGVILWAPPQFADRAAL 220
Query 218 DRAADLFCHAVGSTRPLTVVAGAASRWAWVTDADGLDIDTVQAAVDNAPGARIAIGTTAN 277
+ A S L V A A+S W W+T + + ++ A+ R+AIG+
Sbjct 221 VQVASALSRIAESRSRLLVHASASSLWLWLTPGIPVSAEALETALAPHRDVRLAIGSLDE 280
Query 278 GVEGFRRSHLEALITQRTLSRLRSTQRVAFFADVKMVALISQNPDAASEFITSTLGDLES 337
GV+GFRR+H A+ TQR L + + RVAF+ DV V L++++ EFI +TLG L +
Sbjct 281 GVDGFRRTHDRAVETQR-LVQSNNAHRVAFYDDVAAVILLARDEARLREFIYATLGPLAT 339
Query 338 ASPDLQTALLTFINEQCNASRAAKRLHTHRNTFLRRLESAQRLLPRPLDHTSVHVAVALE 397
DL+ L FI+++ NASR A+ L THRNT L+R+ A+ LP LD +V +AL+
Sbjct 340 GPQDLRDTLRMFIHQRYNASRTAELLFTHRNTILQRIRRAEERLPVTLDRHGTNVGIALD 399
Query 398 ALQW 401
A+ W
Sbjct 400 AMHW 403
Lambda K H
0.318 0.131 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 852977278728
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40