BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1195

Length=99
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|167967999|ref|ZP_02550276.1|  PE family protein [Mycobacterium...   179    9e-44
gi|148660982|ref|YP_001282505.1|  PE family protein [Mycobacteriu...   179    1e-43
gi|15840639|ref|NP_335676.1|  PE family protein [Mycobacterium tu...   179    2e-43
gi|31792388|ref|NP_854881.1|  PE family protein [Mycobacterium bo...   179    2e-43
gi|148822410|ref|YP_001287164.1|  PE family protein [Mycobacteriu...   178    2e-43
gi|289761340|ref|ZP_06520718.1|  PE family protein [Mycobacterium...   177    3e-43
gi|254550201|ref|ZP_05140648.1|  PE family protein [Mycobacterium...   172    2e-41
gi|294993379|ref|ZP_06799070.1|  PE family protein [Mycobacterium...   160    6e-38
gi|15843089|ref|NP_338126.1|  PE family protein [Mycobacterium tu...   119    1e-25
gi|31794651|ref|NP_857144.1|  PE family protein [Mycobacterium bo...   118    3e-25
gi|183984754|ref|YP_001853045.1|  PE-PGRS family protein [Mycobac...   113    8e-24
gi|240169038|ref|ZP_04747697.1|  hypothetical protein MkanA1_0697...   113    1e-23
gi|342861310|ref|ZP_08717958.1|  hypothetical protein MCOL_20601 ...   113    1e-23
gi|183982677|ref|YP_001850968.1|  PE family protein, PE19_1 [Myco...   111    3e-23
gi|118618471|ref|YP_906803.1|  PE family protein [Mycobacterium u...   110    1e-22
gi|333989643|ref|YP_004522257.1|  PE-PGRS family protein [Mycobac...   109    1e-22
gi|342861305|ref|ZP_08717953.1|  hypothetical protein MCOL_20576 ...   108    3e-22
gi|254775399|ref|ZP_05216915.1|  hypothetical protein MaviaA2_121...   107    5e-22
gi|296164186|ref|ZP_06846786.1|  PE family protein [Mycobacterium...   107    6e-22
gi|296164779|ref|ZP_06847341.1|  PE family protein [Mycobacterium...   107    8e-22
gi|296170606|ref|ZP_06852185.1|  PE family protein [Mycobacterium...   106    1e-21
gi|254820293|ref|ZP_05225294.1|  hypothetical protein MintA_10211...   106    1e-21
gi|118616216|ref|YP_904548.1|  PE-PGRS family protein family prot...   105    2e-21
gi|41407605|ref|NP_960441.1|  hypothetical protein MAP1507 [Mycob...   103    9e-21
gi|183982680|ref|YP_001850971.1|  PE family protein, PE19 [Mycoba...   102    3e-20
gi|183985086|ref|YP_001853377.1|  PE family protein, PE32 [Mycoba...   100    9e-20
gi|118618467|ref|YP_906799.1|  PE family protein [Mycobacterium u...  99.8    1e-19
gi|183981962|ref|YP_001850253.1|  PE family protein [Mycobacteriu...  99.4    2e-19
gi|296165761|ref|ZP_06848275.1|  PE family protein [Mycobacterium...  99.4    2e-19
gi|240170799|ref|ZP_04749458.1|  PE-PGRS family protein [Mycobact...  99.0    2e-19
gi|240173524|ref|ZP_04752182.1|  PE family protein, PE19_1 [Mycob...  99.0    2e-19
gi|15841256|ref|NP_336293.1|  PE family protein [Mycobacterium tu...  99.0    2e-19
gi|333990542|ref|YP_004523156.1|  PE-PGRS family protein [Mycobac...  99.0    2e-19
gi|118619370|ref|YP_907702.1|  PE family protein [Mycobacterium u...  98.6    3e-19
gi|333989636|ref|YP_004522250.1|  PE family protein PE8 [Mycobact...  97.4    6e-19
gi|254364620|ref|ZP_04980666.1|  PE family protein [Mycobacterium...  96.7    1e-18
gi|15841261|ref|NP_336298.1|  PE family protein [Mycobacterium tu...  96.7    1e-18
gi|333992874|ref|YP_004525488.1|  PE-PGRS family protein [Mycobac...  96.3    1e-18
gi|31792979|ref|NP_855472.1|  PE family protein [Mycobacterium bo...  96.3    1e-18
gi|333991171|ref|YP_004523785.1|  PE-PGRS family protein [Mycobac...  96.3    1e-18
gi|240172420|ref|ZP_04751079.1|  PE family protein, PE19_1 [Mycob...  95.1    3e-18
gi|118619579|ref|YP_907911.1|  PE family protein [Mycobacterium u...  93.6    8e-18
gi|240172899|ref|ZP_04751558.1|  PE family protein [Mycobacterium...  93.6    9e-18
gi|240172414|ref|ZP_04751073.1|  PE family protein, PE19_1 [Mycob...  93.2    1e-17
gi|15843234|ref|NP_338271.1|  PE family protein [Mycobacterium tu...  92.8    1e-17
gi|240173303|ref|ZP_04751961.1|  PE family protein [Mycobacterium...  92.0    3e-17
gi|333989806|ref|YP_004522420.1|  PE family protein PE19 [Mycobac...  91.7    3e-17
gi|254365420|ref|ZP_04981465.1|  PE family protein [Mycobacterium...  91.3    4e-17
gi|167968541|ref|ZP_02550818.1|  PE family protein [Mycobacterium...  91.3    5e-17
gi|333990534|ref|YP_004523148.1|  PE-PGRS family protein [Mycobac...  90.9    5e-17


>gi|167967999|ref|ZP_02550276.1| PE family protein [Mycobacterium tuberculosis H37Ra]
Length=101

 Score =  179 bits (455),  Expect = 9e-44, Method: Compositional matrix adjust.
 Identities = 99/99 (100%), Positives = 99/99 (100%), Gaps = 0/99 (0%)

Query  1    VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  60
            VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA
Sbjct  3    VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  62

Query  61   MYQSVSARAAAIHDQFVATLASSASSYAATEVANAAAAS  99
            MYQSVSARAAAIHDQFVATLASSASSYAATEVANAAAAS
Sbjct  63   MYQSVSARAAAIHDQFVATLASSASSYAATEVANAAAAS  101


>gi|148660982|ref|YP_001282505.1| PE family protein [Mycobacterium tuberculosis H37Ra]
 gi|148505134|gb|ABQ72943.1| PE family protein [Mycobacterium tuberculosis H37Ra]
Length=115

 Score =  179 bits (453),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 99/99 (100%), Positives = 99/99 (100%), Gaps = 0/99 (0%)

Query  1    VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  60
            VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA
Sbjct  17   VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  76

Query  61   MYQSVSARAAAIHDQFVATLASSASSYAATEVANAAAAS  99
            MYQSVSARAAAIHDQFVATLASSASSYAATEVANAAAAS
Sbjct  77   MYQSVSARAAAIHDQFVATLASSASSYAATEVANAAAAS  115


>gi|15840639|ref|NP_335676.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|253799762|ref|YP_003032763.1| PE family protein [Mycobacterium tuberculosis KZN 1435]
 gi|289555017|ref|ZP_06444227.1| PE family protein [Mycobacterium tuberculosis KZN 605]
 6 more sequence titles
 Length=111

 Score =  179 bits (453),  Expect = 2e-43, Method: Compositional matrix adjust.
 Identities = 99/99 (100%), Positives = 99/99 (100%), Gaps = 0/99 (0%)

Query  1    VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  60
            VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA
Sbjct  13   VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  72

Query  61   MYQSVSARAAAIHDQFVATLASSASSYAATEVANAAAAS  99
            MYQSVSARAAAIHDQFVATLASSASSYAATEVANAAAAS
Sbjct  73   MYQSVSARAAAIHDQFVATLASSASSYAATEVANAAAAS  111


>gi|31792388|ref|NP_854881.1| PE family protein [Mycobacterium bovis AF2122/97]
 gi|57116840|ref|YP_177794.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 gi|121637124|ref|YP_977347.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 55 more sequence titles
 Length=99

 Score =  179 bits (453),  Expect = 2e-43, Method: Compositional matrix adjust.
 Identities = 98/99 (99%), Positives = 99/99 (100%), Gaps = 0/99 (0%)

Query  1   VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  60
           +SFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA
Sbjct  1   MSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  60

Query  61  MYQSVSARAAAIHDQFVATLASSASSYAATEVANAAAAS  99
           MYQSVSARAAAIHDQFVATLASSASSYAATEVANAAAAS
Sbjct  61  MYQSVSARAAAIHDQFVATLASSASSYAATEVANAAAAS  99


>gi|148822410|ref|YP_001287164.1| PE family protein [Mycobacterium tuberculosis F11]
 gi|254231459|ref|ZP_04924786.1| PE family protein [Mycobacterium tuberculosis C]
 gi|254364096|ref|ZP_04980142.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
 gi|124600518|gb|EAY59528.1| PE family protein [Mycobacterium tuberculosis C]
 gi|134149610|gb|EBA41655.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
 gi|148720937|gb|ABR05562.1| PE family protein [Mycobacterium tuberculosis F11]
Length=109

 Score =  178 bits (452),  Expect = 2e-43, Method: Compositional matrix adjust.
 Identities = 99/99 (100%), Positives = 99/99 (100%), Gaps = 0/99 (0%)

Query  1    VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  60
            VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA
Sbjct  11   VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  70

Query  61   MYQSVSARAAAIHDQFVATLASSASSYAATEVANAAAAS  99
            MYQSVSARAAAIHDQFVATLASSASSYAATEVANAAAAS
Sbjct  71   MYQSVSARAAAIHDQFVATLASSASSYAATEVANAAAAS  109


>gi|289761340|ref|ZP_06520718.1| PE family protein [Mycobacterium tuberculosis GM 1503]
 gi|289708846|gb|EFD72862.1| PE family protein [Mycobacterium tuberculosis GM 1503]
Length=128

 Score =  177 bits (450),  Expect = 3e-43, Method: Compositional matrix adjust.
 Identities = 97/97 (100%), Positives = 97/97 (100%), Gaps = 0/97 (0%)

Query  1    VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  60
            VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA
Sbjct  13   VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  72

Query  61   MYQSVSARAAAIHDQFVATLASSASSYAATEVANAAA  97
            MYQSVSARAAAIHDQFVATLASSASSYAATEVANAAA
Sbjct  73   MYQSVSARAAAIHDQFVATLASSASSYAATEVANAAA  109


>gi|254550201|ref|ZP_05140648.1| PE family protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|313658059|ref|ZP_07814939.1| PE family protein [Mycobacterium tuberculosis KZN V2475]
Length=95

 Score =  172 bits (436),  Expect = 2e-41, Method: Compositional matrix adjust.
 Identities = 95/95 (100%), Positives = 95/95 (100%), Gaps = 0/95 (0%)

Query  5   MAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAAMYQS  64
           MAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAAMYQS
Sbjct  1   MAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAAMYQS  60

Query  65  VSARAAAIHDQFVATLASSASSYAATEVANAAAAS  99
           VSARAAAIHDQFVATLASSASSYAATEVANAAAAS
Sbjct  61  VSARAAAIHDQFVATLASSASSYAATEVANAAAAS  95


>gi|294993379|ref|ZP_06799070.1| PE family protein [Mycobacterium tuberculosis 210]
 gi|297730728|ref|ZP_06959846.1| PE family protein [Mycobacterium tuberculosis KZN R506]
Length=90

 Score =  160 bits (405),  Expect = 6e-38, Method: Compositional matrix adjust.
 Identities = 90/90 (100%), Positives = 90/90 (100%), Gaps = 0/90 (0%)

Query  10  MLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAAMYQSVSARA  69
           MLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAAMYQSVSARA
Sbjct  1   MLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAAMYQSVSARA  60

Query  70  AAIHDQFVATLASSASSYAATEVANAAAAS  99
           AAIHDQFVATLASSASSYAATEVANAAAAS
Sbjct  61  AAIHDQFVATLASSASSYAATEVANAAAAS  90


>gi|15843089|ref|NP_338126.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|57117110|ref|YP_177975.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 gi|121639395|ref|YP_979619.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 75 more sequence titles
 Length=98

 Score =  119 bits (299),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 68/95 (72%), Positives = 75/95 (79%), Gaps = 1/95 (1%)

Query  1   VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  60
           +SF  A PEMLAAAA  L+S+GAT  ASNAAAA PTTGVVPPAADEVS L A  F  HAA
Sbjct  1   MSFT-AQPEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAA  59

Query  61  MYQSVSARAAAIHDQFVATLASSASSYAATEVANA  95
            YQ+ SA+AA IH+QFV TLA+SASSYA TE ANA
Sbjct  60  TYQTASAKAAVIHEQFVTTLATSASSYADTEAANA  94


>gi|31794651|ref|NP_857144.1| PE family protein [Mycobacterium bovis AF2122/97]
 gi|31620248|emb|CAD95691.1| PE FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
Length=98

 Score =  118 bits (296),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 65/90 (73%), Positives = 71/90 (79%), Gaps = 0/90 (0%)

Query  6   AYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAAMYQSV  65
           A PEMLAAAA  L+S+GAT   SNAAAA PTTGVVPPAADEVS L A  F  HAA YQ+ 
Sbjct  5   AQPEMLAAAAGELRSLGATLKVSNAAAAVPTTGVVPPAADEVSLLLATQFRTHAATYQTA  64

Query  66  SARAAAIHDQFVATLASSASSYAATEVANA  95
           SA+AA IH+QFV TLA+SASSYA TE ANA
Sbjct  65  SAKAAVIHEQFVTTLATSASSYADTEAANA  94


>gi|183984754|ref|YP_001853045.1| PE-PGRS family protein [Mycobacterium marinum M]
 gi|183178080|gb|ACC43190.1| PE-PGRS family protein [Mycobacterium marinum M]
Length=99

 Score =  113 bits (283),  Expect = 8e-24, Method: Compositional matrix adjust.
 Identities = 65/98 (67%), Positives = 74/98 (76%), Gaps = 0/98 (0%)

Query  1   VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  60
           ++FV + PE L AAA  L S+GA   A NAAA AP TGVVP AADEVSALTAAHFAAH A
Sbjct  1   MAFVTSAPEALTAAALNLHSVGAGMSAGNAAAMAPITGVVPAAADEVSALTAAHFAAHGA  60

Query  61  MYQSVSARAAAIHDQFVATLASSASSYAATEVANAAAA  98
           MYQ++SA+A AIH+ FV TL +S  SYA TE ANA AA
Sbjct  61  MYQTLSAQAQAIHEMFVTTLQASGGSYAETEAANAIAA  98


>gi|240169038|ref|ZP_04747697.1| hypothetical protein MkanA1_06979 [Mycobacterium kansasii ATCC 
12478]
Length=99

 Score =  113 bits (282),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 62/87 (72%), Positives = 71/87 (82%), Gaps = 0/87 (0%)

Query  1   VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  60
           +SF+ A P++LAAAA  L S+GA   A N+AAAAPTTGV+PPAADEVSAL A  FAAHAA
Sbjct  1   MSFLTAQPDVLAAAAANLGSVGAALSAGNSAAAAPTTGVLPPAADEVSALVAVQFAAHAA  60

Query  61  MYQSVSARAAAIHDQFVATLASSASSY  87
            YQ+VSARAA IHDQ VATLA+SA SY
Sbjct  61  TYQAVSARAAGIHDQLVATLAASAGSY  87


>gi|342861310|ref|ZP_08717958.1| hypothetical protein MCOL_20601 [Mycobacterium colombiense CECT 
3035]
 gi|342131210|gb|EGT84491.1| hypothetical protein MCOL_20601 [Mycobacterium colombiense CECT 
3035]
Length=99

 Score =  113 bits (282),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 65/91 (72%), Positives = 74/91 (82%), Gaps = 0/91 (0%)

Query  1   VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  60
           +SFV   PE LAAAA  LQ+IG+T  A NAAAAAPTTGVVP AADEVSALTAA FAAH  
Sbjct  1   MSFVTTQPEALAAAAGNLQTIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHGQ  60

Query  61  MYQSVSARAAAIHDQFVATLASSASSYAATE  91
           MYQ+VSA+AAAIH+ FV TL++S+ SYA TE
Sbjct  61  MYQAVSAQAAAIHEMFVNTLSTSSGSYAVTE  91


>gi|183982677|ref|YP_001850968.1| PE family protein, PE19_1 [Mycobacterium marinum M]
 gi|183176003|gb|ACC41113.1| PE family protein, PE19_1 [Mycobacterium marinum M]
Length=99

 Score =  111 bits (278),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 61/87 (71%), Positives = 70/87 (81%), Gaps = 0/87 (0%)

Query  1   VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  60
           +S+V   PE LAAAA TLQ IG+T  + NAAAAAPTTGVVP AADEVSALTAA FAAHA 
Sbjct  1   MSYVTTQPEALAAAASTLQGIGSTLSSQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  MYQSVSARAAAIHDQFVATLASSASSY  87
           MYQ+VSA+A+AIH+ FV TL  S+ SY
Sbjct  61  MYQAVSAQASAIHEMFVNTLGISSGSY  87


>gi|118618471|ref|YP_906803.1| PE family protein [Mycobacterium ulcerans Agy99]
 gi|118570581|gb|ABL05332.1| PE family protein [Mycobacterium ulcerans Agy99]
Length=99

 Score =  110 bits (274),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 60/87 (69%), Positives = 69/87 (80%), Gaps = 0/87 (0%)

Query  1   VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  60
           +S+V   PE LAAAA TLQ IG+T  + NAAAAAPTTGVVP AADEVSALTAA F AHA 
Sbjct  1   MSYVTTQPEALAAAASTLQGIGSTLSSQNAAAAAPTTGVVPAAADEVSALTAAQFVAHAQ  60

Query  61  MYQSVSARAAAIHDQFVATLASSASSY  87
           MYQ+VSA+A+AIH+ FV TL  S+ SY
Sbjct  61  MYQAVSAQASAIHEMFVNTLGISSGSY  87


>gi|333989643|ref|YP_004522257.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
 gi|333485611|gb|AEF35003.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
Length=99

 Score =  109 bits (273),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 61/87 (71%), Positives = 69/87 (80%), Gaps = 0/87 (0%)

Query  1   VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  60
           +SFV   PE LAAAA  LQ+IG+   A NAAA+APTTGVVP AADEVSALTAA FA HA 
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGSALNAQNAAASAPTTGVVPAAADEVSALTAAQFATHAT  60

Query  61  MYQSVSARAAAIHDQFVATLASSASSY  87
           +YQSV+A+AAAIH+ FVATL  SA SY
Sbjct  61  LYQSVAAQAAAIHEMFVATLNGSAESY  87


>gi|342861305|ref|ZP_08717953.1| hypothetical protein MCOL_20576 [Mycobacterium colombiense CECT 
3035]
 gi|342131205|gb|EGT84486.1| hypothetical protein MCOL_20576 [Mycobacterium colombiense CECT 
3035]
Length=99

 Score =  108 bits (269),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 63/87 (73%), Positives = 72/87 (83%), Gaps = 0/87 (0%)

Query  1   VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  60
           +SFV   PE LAAAA  LQ+IG+T  A NAAAAAPTTGVVP AADEVSALTAA FAAHA 
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  MYQSVSARAAAIHDQFVATLASSASSY  87
           MYQ+VSA+AAAIH+ FV TL++S+ SY
Sbjct  61  MYQAVSAQAAAIHEMFVNTLSTSSGSY  87


>gi|254775399|ref|ZP_05216915.1| hypothetical protein MaviaA2_12121 [Mycobacterium avium subsp. 
avium ATCC 25291]
 gi|212595819|gb|ACJ35525.1| PE7 [Mycobacterium avium subsp. avium]
 gi|336457654|gb|EGO36658.1| PE family protein [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=99

 Score =  107 bits (268),  Expect = 5e-22, Method: Compositional matrix adjust.
 Identities = 63/87 (73%), Positives = 72/87 (83%), Gaps = 0/87 (0%)

Query  1   VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  60
           +SFV   PE LAAAA  LQ+IG+T  A NAAAAAPTTGVVP AADEVSALTAA FAAHA 
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  MYQSVSARAAAIHDQFVATLASSASSY  87
           MYQ+VSA+AAAIH+ FV TL++S+ SY
Sbjct  61  MYQAVSAQAAAIHEAFVNTLSTSSGSY  87


>gi|296164186|ref|ZP_06846786.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295900461|gb|EFG79867.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99

 Score =  107 bits (267),  Expect = 6e-22, Method: Compositional matrix adjust.
 Identities = 60/84 (72%), Positives = 65/84 (78%), Gaps = 0/84 (0%)

Query  8   PEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAAMYQSVSA  67
           P+ML AAA TLQ IG+   A NA AAAPTTGVVP AADEVSALTA  FAAHA MYQ+VSA
Sbjct  8   PQMLTAAAGTLQGIGSAMSAENAPAAAPTTGVVPAAADEVSALTALQFAAHAQMYQAVSA  67

Query  68  RAAAIHDQFVATLASSASSYAATE  91
           +AAAIH+ F  TL  SA SYA TE
Sbjct  68  QAAAIHEMFANTLGVSADSYAVTE  91


>gi|296164779|ref|ZP_06847341.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295899880|gb|EFG79324.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99

 Score =  107 bits (266),  Expect = 8e-22, Method: Compositional matrix adjust.
 Identities = 65/91 (72%), Positives = 74/91 (82%), Gaps = 0/91 (0%)

Query  1   VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  60
           +SFV   PE L+AAA +LQSIG+   A NAAAAAPTTGVVP AADEVSALTAA FAAHA 
Sbjct  1   MSFVTTQPEALSAAAGSLQSIGSALNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  MYQSVSARAAAIHDQFVATLASSASSYAATE  91
           MYQ+VSA+AAAIH+ FV TL+ S+ SYA TE
Sbjct  61  MYQAVSAQAAAIHEMFVNTLSMSSGSYAVTE  91


>gi|296170606|ref|ZP_06852185.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894738|gb|EFG74468.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99

 Score =  106 bits (265),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 63/87 (73%), Positives = 71/87 (82%), Gaps = 0/87 (0%)

Query  1   VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  60
           +SFV   PE LAAAA  LQ+IG+T  A NAAAAAPTTGVVP AADEVSALTAA FAAHA 
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  MYQSVSARAAAIHDQFVATLASSASSY  87
           MYQ+VSA+AAAIH+ FV TL+ S+ SY
Sbjct  61  MYQAVSAQAAAIHEAFVNTLSMSSGSY  87


>gi|254820293|ref|ZP_05225294.1| hypothetical protein MintA_10211 [Mycobacterium intracellulare 
ATCC 13950]
 gi|212596298|gb|ACJ35567.1| PE7 [Mycobacterium intracellulare ATCC 13950]
Length=99

 Score =  106 bits (264),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 62/87 (72%), Positives = 71/87 (82%), Gaps = 0/87 (0%)

Query  1   VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  60
           +SFV   PE LAAAA  LQ+IG+T  A NAAAAAPTTGVVP AADEVSALTAA FAAHA 
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  MYQSVSARAAAIHDQFVATLASSASSY  87
           MYQ+VSA+A AIH+ FV TL++S+ SY
Sbjct  61  MYQAVSAQAQAIHEAFVNTLSTSSGSY  87


>gi|118616216|ref|YP_904548.1| PE-PGRS family protein family protein [Mycobacterium ulcerans 
Agy99]
 gi|118568326|gb|ABL03077.1| PE-PGRS family protein family protein [Mycobacterium ulcerans 
Agy99]
Length=99

 Score =  105 bits (262),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 61/91 (68%), Positives = 68/91 (75%), Gaps = 0/91 (0%)

Query  8   PEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAAMYQSVSA  67
           PE L AAA  L S+GA T A NAAA AP TGVVP AADEVSALTAAHFAAH AM Q++SA
Sbjct  8   PEALTAAALNLHSVGAGTSAGNAAAMAPITGVVPAAADEVSALTAAHFAAHGAMCQTLSA  67

Query  68  RAAAIHDQFVATLASSASSYAATEVANAAAA  98
           +A AI++ FV TL +   SYA TE ANA AA
Sbjct  68  QAQAIYEMFVTTLQACGGSYAETEAANAVAA  98


>gi|41407605|ref|NP_960441.1| hypothetical protein MAP1507 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41395958|gb|AAS03824.1| PE_4 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|225698451|gb|ACO07343.1| PE protein [Mycobacterium avium subsp. paratuberculosis]
Length=99

 Score =  103 bits (257),  Expect = 9e-21, Method: Compositional matrix adjust.
 Identities = 62/87 (72%), Positives = 71/87 (82%), Gaps = 0/87 (0%)

Query  1   VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  60
           +SFV   PE LAAAA  LQ+IG T  A NAAAAAPTTGVVP AADEVSALTAA FAA+A 
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGWTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAYAQ  60

Query  61  MYQSVSARAAAIHDQFVATLASSASSY  87
           MYQ+VSA+AAAIH+ FV TL++S+ SY
Sbjct  61  MYQAVSAQAAAIHEAFVNTLSTSSVSY  87


>gi|183982680|ref|YP_001850971.1| PE family protein, PE19 [Mycobacterium marinum M]
 gi|183176006|gb|ACC41116.1| PE family protein, PE19 [Mycobacterium marinum M]
Length=99

 Score =  102 bits (253),  Expect = 3e-20, Method: Compositional matrix adjust.
 Identities = 64/87 (74%), Positives = 70/87 (81%), Gaps = 0/87 (0%)

Query  1   VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  60
           +SFV   PE LAAAA  LQ IG T  A NAAAAAPTTGVVP AADEVSALTAA FAAHA 
Sbjct  1   MSFVTTQPEALAAAAANLQGIGTTMSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  MYQSVSARAAAIHDQFVATLASSASSY  87
           MYQ+VSA+AAAIH+ FV TLA+S+ SY
Sbjct  61  MYQAVSAQAAAIHEMFVNTLATSSGSY  87


>gi|183985086|ref|YP_001853377.1| PE family protein, PE32 [Mycobacterium marinum M]
 gi|183178412|gb|ACC43522.1| PE family protein, PE32 [Mycobacterium marinum M]
Length=99

 Score =  100 bits (248),  Expect = 9e-20, Method: Compositional matrix adjust.
 Identities = 58/99 (59%), Positives = 69/99 (70%), Gaps = 0/99 (0%)

Query  1   VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  60
           +S V A PE++A  A  LQ+I +   A +  A APTTGVVPPAAD VS LTAA FAAHA 
Sbjct  1   MSHVTAQPEIVAGVALELQAINSAARAGDEVAVAPTTGVVPPAADLVSMLTAAQFAAHAR  60

Query  61  MYQSVSARAAAIHDQFVATLASSASSYAATEVANAAAAS  99
           +YQ++SA+AAA+ DQ V  L  SA SYAATE AN  A S
Sbjct  61  VYQAISAQAAAVQDQLVTVLGISAGSYAATEAANTVAVS  99


>gi|118618467|ref|YP_906799.1| PE family protein [Mycobacterium ulcerans Agy99]
 gi|118570577|gb|ABL05328.1| PE family protein [Mycobacterium ulcerans Agy99]
Length=99

 Score = 99.8 bits (247),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 62/87 (72%), Positives = 68/87 (79%), Gaps = 0/87 (0%)

Query  1   VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  60
           +SFV   PE LAAAA  LQ IG T  A NAAAAAPTTGVVP AADEVSALTAA FA HA 
Sbjct  1   MSFVTTQPEALAAAAANLQGIGTTMSAQNAAAAAPTTGVVPAAADEVSALTAAQFAGHAQ  60

Query  61  MYQSVSARAAAIHDQFVATLASSASSY  87
           MYQ+VSA+AA IH+ FV TLA+S+ SY
Sbjct  61  MYQAVSAQAAVIHEMFVNTLATSSGSY  87


>gi|183981962|ref|YP_001850253.1| PE family protein [Mycobacterium marinum M]
 gi|183175288|gb|ACC40398.1| PE family protein [Mycobacterium marinum M]
Length=267

 Score = 99.4 bits (246),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 58/99 (59%), Positives = 71/99 (72%), Gaps = 1/99 (1%)

Query  1   VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTT-GVVPPAADEVSALTAAHFAAHA  59
           +SF+   PE LAAAA  L++IGAT  A N AA APTT GV+P AADEVSAL A+ F A+ 
Sbjct  1   MSFLTTQPEELAAAAGKLETIGATMDAENVAAVAPTTTGVIPAAADEVSALQASLFTAYG  60

Query  60  AMYQSVSARAAAIHDQFVATLASSASSYAATEVANAAAA  98
            +YQ VSA AA ++D FV TL  SA +YAA E AN++AA
Sbjct  61  TLYQQVSAEAATLYDMFVRTLGVSAGTYAAAETANSSAA  99


>gi|296165761|ref|ZP_06848275.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898886|gb|EFG78378.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99

 Score = 99.4 bits (246),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 64/99 (65%), Positives = 73/99 (74%), Gaps = 0/99 (0%)

Query  1   VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  60
           +SFV A PEMLAA A+ L+ IG+     NAAA+  TTGV+P  ADEVSALTA  FAAHA 
Sbjct  1   MSFVTAQPEMLAATANDLRGIGSALAVQNAAASRSTTGVIPAGADEVSALTAVQFAAHAQ  60

Query  61  MYQSVSARAAAIHDQFVATLASSASSYAATEVANAAAAS  99
           MYQ+VSA+AAA +D FV TLA SA SYAATE  N  AAS
Sbjct  61  MYQAVSAQAAAAYDLFVRTLAVSAGSYAATEAINTIAAS  99


>gi|240170799|ref|ZP_04749458.1| PE-PGRS family protein [Mycobacterium kansasii ATCC 12478]
Length=99

 Score = 99.0 bits (245),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 59/87 (68%), Positives = 68/87 (79%), Gaps = 0/87 (0%)

Query  1   VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  60
           +SFV + PE L +AA  LQSIG+   ASNAAA AP TGVVP AADEVSALTAAHFAAH  
Sbjct  1   MSFVTSEPEALISAAGNLQSIGSAMNASNAAAIAPITGVVPAAADEVSALTAAHFAAHGT  60

Query  61  MYQSVSARAAAIHDQFVATLASSASSY  87
           +YQ+VSA+AAAIH+ FV TL +S  SY
Sbjct  61  LYQAVSAQAAAIHELFVTTLGASGGSY  87


>gi|240173524|ref|ZP_04752182.1| PE family protein, PE19_1 [Mycobacterium kansasii ATCC 12478]
Length=99

 Score = 99.0 bits (245),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 64/87 (74%), Positives = 71/87 (82%), Gaps = 0/87 (0%)

Query  1   VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  60
           +SFV   PE LAAAA +LQ IG T  A NAAAAAPTTGVVP AADEVSALTAA FAAHA 
Sbjct  1   MSFVTTQPEALAAAASSLQGIGTTMSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  MYQSVSARAAAIHDQFVATLASSASSY  87
           MYQ+VSA+AAAIH+ FV TLA+S+ SY
Sbjct  61  MYQAVSAQAAAIHEMFVNTLATSSGSY  87


>gi|15841256|ref|NP_336293.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|31792976|ref|NP_855469.1| PE family protein [Mycobacterium bovis AF2122/97]
 gi|57116910|ref|YP_177834.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 60 more sequence titles
 Length=99

 Score = 99.0 bits (245),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 60/87 (69%), Positives = 68/87 (79%), Gaps = 0/87 (0%)

Query  1   VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  60
           +SFV   PE LAAAA +LQ IG+   A NAAAA PTTGVVP AADEVSALTAA FAAHA 
Sbjct  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  MYQSVSARAAAIHDQFVATLASSASSY  87
           +YQ+VSA+AAAIH+ FV TL  S+ SY
Sbjct  61  IYQAVSAQAAAIHEMFVNTLQMSSGSY  87


>gi|333990542|ref|YP_004523156.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
 gi|333486510|gb|AEF35902.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
Length=99

 Score = 99.0 bits (245),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 61/87 (71%), Positives = 68/87 (79%), Gaps = 0/87 (0%)

Query  1   VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  60
           +SFV   PE L AAA  L +IG+   A NAAAA PTTGVVP AADEVSALTAA FAAHA+
Sbjct  1   MSFVNTQPEALTAAAGNLAAIGSALSAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAS  60

Query  61  MYQSVSARAAAIHDQFVATLASSASSY  87
           MYQS+SA+A AIH  FVATL SSA+SY
Sbjct  61  MYQSISAQAEAIHQAFVATLNSSANSY  87


>gi|118619370|ref|YP_907702.1| PE family protein [Mycobacterium ulcerans Agy99]
 gi|118571480|gb|ABL06231.1| PE family protein [Mycobacterium ulcerans Agy99]
Length=99

 Score = 98.6 bits (244),  Expect = 3e-19, Method: Compositional matrix adjust.
 Identities = 57/99 (58%), Positives = 69/99 (70%), Gaps = 0/99 (0%)

Query  1   VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  60
           +S V A PE++A  A  LQ+I +   A +  A APTTGVVPPAAD VS LTAA FAAHA 
Sbjct  1   MSHVTAQPEIVAGVALELQAINSAARAGDEVAVAPTTGVVPPAADLVSMLTAAQFAAHAR  60

Query  61  MYQSVSARAAAIHDQFVATLASSASSYAATEVANAAAAS  99
           +YQ++SA+AAA+ D+ V  L  SA SYAATE AN  A S
Sbjct  61  VYQAISAQAAAVQDELVTVLGISAGSYAATEAANTVAVS  99


>gi|333989636|ref|YP_004522250.1| PE family protein PE8 [Mycobacterium sp. JDM601]
 gi|333485604|gb|AEF34996.1| PE family protein PE8 [Mycobacterium sp. JDM601]
Length=273

 Score = 97.4 bits (241),  Expect = 6e-19, Method: Compositional matrix adjust.
 Identities = 51/91 (57%), Positives = 64/91 (71%), Gaps = 0/91 (0%)

Query  1   VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  60
           +SFV  +PE +AA A  LQ+IG+   A N AAAAPTTG+ P  ADEVS L A  FAA+  
Sbjct  1   MSFVTTHPEAMAATASNLQAIGSAMTAQNTAAAAPTTGIAPAGADEVSVLQATQFAAYGQ  60

Query  61  MYQSVSARAAAIHDQFVATLASSASSYAATE  91
           +YQ +SA+AAAI + FV TL +SA SY +TE
Sbjct  61  LYQQISAQAAAIQEMFVNTLRTSADSYGSTE  91


>gi|254364620|ref|ZP_04980666.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
 gi|134150134|gb|EBA42179.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
Length=99

 Score = 96.7 bits (239),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 59/85 (70%), Positives = 66/85 (78%), Gaps = 0/85 (0%)

Query  3   FVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAAMY  62
           FV   PE LAAAA +LQ IG+   A NAAAA PTTGVVP AADEVSALTAA FAAHA +Y
Sbjct  3   FVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQIY  62

Query  63  QSVSARAAAIHDQFVATLASSASSY  87
           Q+VSA+AAAIH+ FV TL  S+ SY
Sbjct  63  QAVSAQAAAIHEMFVNTLQMSSGSY  87


>gi|15841261|ref|NP_336298.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|148823006|ref|YP_001287760.1| PE family protein [Mycobacterium tuberculosis F11]
 gi|253799168|ref|YP_003032169.1| PE family protein [Mycobacterium tuberculosis KZN 1435]
 17 more sequence titles
 Length=105

 Score = 96.7 bits (239),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 63/87 (73%), Positives = 69/87 (80%), Gaps = 0/87 (0%)

Query  1   VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  60
           +SFV   PE LAAAA  LQ IG T  A NAAAAAPTTGVVP AADEVSALTAA FAAHA 
Sbjct  7   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  66

Query  61  MYQSVSARAAAIHDQFVATLASSASSY  87
           MYQ+VSA+AAAIH+ FV TL +S+ SY
Sbjct  67  MYQTVSAQAAAIHEMFVNTLVASSGSY  93


>gi|333992874|ref|YP_004525488.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
 gi|333488842|gb|AEF38234.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
Length=95

 Score = 96.3 bits (238),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 57/90 (64%), Positives = 64/90 (72%), Gaps = 0/90 (0%)

Query  6   AYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAAMYQSV  65
           A PE L A A  L SIG    A N AAA PTTGVVP AADEVSALTAA FA HA MYQ++
Sbjct  3   ALPEELTATAAELSSIGNAVAAQNTAAAGPTTGVVPAAADEVSALTAAQFARHAQMYQAI  62

Query  66  SARAAAIHDQFVATLASSASSYAATEVANA  95
           S RAA +H++FV  L  +A SYAAT+ ANA
Sbjct  63  SKRAAVVHERFVIMLQRNAQSYAATDAANA  92


>gi|31792979|ref|NP_855472.1| PE family protein [Mycobacterium bovis AF2122/97]
 gi|57116913|ref|YP_177837.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 gi|121637692|ref|YP_977915.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 59 more sequence titles
 Length=99

 Score = 96.3 bits (238),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 63/87 (73%), Positives = 69/87 (80%), Gaps = 0/87 (0%)

Query  1   VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  60
           +SFV   PE LAAAA  LQ IG T  A NAAAAAPTTGVVP AADEVSALTAA FAAHA 
Sbjct  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  MYQSVSARAAAIHDQFVATLASSASSY  87
           MYQ+VSA+AAAIH+ FV TL +S+ SY
Sbjct  61  MYQTVSAQAAAIHEMFVNTLVASSGSY  87


>gi|333991171|ref|YP_004523785.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
 gi|333487139|gb|AEF36531.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
Length=99

 Score = 96.3 bits (238),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 52/87 (60%), Positives = 61/87 (71%), Gaps = 0/87 (0%)

Query  1   VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  60
           +SF+ A PE L AAAD L S G    + N AA  PTTGV+PPAADE+SA+ AA F   A 
Sbjct  1   MSFLTADPEALRAAADCLSSTGGALASQNTAAQVPTTGVLPPAADEISAMLAARFTTQAQ  60

Query  61  MYQSVSARAAAIHDQFVATLASSASSY  87
            YQ VSA+AAAIH+ FVATL  SAS+Y
Sbjct  61  HYQQVSAQAAAIHEMFVATLNGSASTY  87


>gi|240172420|ref|ZP_04751079.1| PE family protein, PE19_1 [Mycobacterium kansasii ATCC 12478]
Length=99

 Score = 95.1 bits (235),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 52/94 (56%), Positives = 66/94 (71%), Gaps = 0/94 (0%)

Query  1   VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  60
           +S +   PEML +AA  LQ++G++ ++ NAAAAA T  V+PPA DEVSALTA HFAAHA 
Sbjct  1   MSILTTEPEMLQSAATKLQTLGSSMISRNAAAAAATMNVIPPAGDEVSALTAMHFAAHAK  60

Query  61  MYQSVSARAAAIHDQFVATLASSASSYAATEVAN  94
            +Q+V  RA AIH+ FVATLA+   SY   E  N
Sbjct  61  AFQAVYTRAIAIHEAFVATLAACGDSYTVVEATN  94


>gi|118619579|ref|YP_907911.1| PE family protein [Mycobacterium ulcerans Agy99]
 gi|183984578|ref|YP_001852869.1| PE family protein [Mycobacterium marinum M]
 gi|118571689|gb|ABL06440.1| PE family protein [Mycobacterium ulcerans Agy99]
 gi|183177904|gb|ACC43014.1| PE family protein [Mycobacterium marinum M]
Length=99

 Score = 93.6 bits (231),  Expect = 8e-18, Method: Compositional matrix adjust.
 Identities = 55/87 (64%), Positives = 67/87 (78%), Gaps = 0/87 (0%)

Query  1   VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  60
           +SFV+  PE LAAAA +LQ +G+   A +AAA APTT V P AAD+VSALTAA F+AHA 
Sbjct  1   MSFVVTQPERLAAAAGSLQEVGSAVSAQSAAAVAPTTSVAPAAADQVSALTAARFSAHAQ  60

Query  61  MYQSVSARAAAIHDQFVATLASSASSY  87
           +YQ VSA+A AIHD+FVA LA+ A SY
Sbjct  61  LYQMVSAQAVAIHDRFVAALAAGAQSY  87


>gi|240172899|ref|ZP_04751558.1| PE family protein [Mycobacterium kansasii ATCC 12478]
Length=99

 Score = 93.6 bits (231),  Expect = 9e-18, Method: Compositional matrix adjust.
 Identities = 54/87 (63%), Positives = 65/87 (75%), Gaps = 0/87 (0%)

Query  1   VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  60
           ++FV+  PE LAAAA  LQ IG+   A N AA+A TT V P AAD+VSALTAA F+AHA 
Sbjct  1   MTFVVTQPETLAAAAGNLQEIGSAVSAQNVAASAHTTSVTPAAADQVSALTAARFSAHAQ  60

Query  61  MYQSVSARAAAIHDQFVATLASSASSY  87
           +YQ VSA+AAAIH  FVA L +SA+SY
Sbjct  61  VYQVVSAQAAAIHQAFVAALTASANSY  87


>gi|240172414|ref|ZP_04751073.1| PE family protein, PE19_1 [Mycobacterium kansasii ATCC 12478]
Length=281

 Score = 93.2 bits (230),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 52/95 (55%), Positives = 66/95 (70%), Gaps = 0/95 (0%)

Query  1   VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  60
           +SFV+  PEML AA   L++IG+    +N  AA P  GV+P AADEVS +TAA F A+  
Sbjct  1   MSFVITLPEMLMAAVGRLEAIGSAVSTANVTAALPIAGVIPAAADEVSMVTAASFTAYGQ  60

Query  61  MYQSVSARAAAIHDQFVATLASSASSYAATEVANA  95
           +YQ++SA A  IH+QFV  L  SA+SYAATE ANA
Sbjct  61  LYQAISAEAHLIHEQFVKALGLSANSYAATEAANA  95


>gi|15843234|ref|NP_338271.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|57117136|ref|YP_177999.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 gi|148663485|ref|YP_001285008.1| PE family protein [Mycobacterium tuberculosis H37Ra]
 67 more sequence titles
 Length=99

 Score = 92.8 bits (229),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 52/87 (60%), Positives = 60/87 (69%), Gaps = 0/87 (0%)

Query  1   VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  60
           +S + A PEMLAA A  LQSI A   A NAA A PTTGVVP AAD VS LTA+ FAAHA 
Sbjct  1   MSIMHAEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQ  60

Query  61  MYQSVSARAAAIHDQFVATLASSASSY  87
           +YQ++SA A A+ +Q   TL  SA SY
Sbjct  61  LYQAISAEAMAVQEQLATTLGISAGSY  87


>gi|240173303|ref|ZP_04751961.1| PE family protein [Mycobacterium kansasii ATCC 12478]
Length=146

 Score = 92.0 bits (227),  Expect = 3e-17, Method: Compositional matrix adjust.
 Identities = 48/87 (56%), Positives = 62/87 (72%), Gaps = 0/87 (0%)

Query  1   VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  60
           +SF+   P+ LAAAA  LQ+IGAT  A N AAA PTTGV+P AADEVS L A+ F A+ +
Sbjct  1   MSFLTTQPDELAAAAGKLQTIGATMEAENVAAAVPTTGVIPAAADEVSMLQASMFTAYGS  60

Query  61  MYQSVSARAAAIHDQFVATLASSASSY  87
           +YQ +SA AAA+++  V TL  SA +Y
Sbjct  61  LYQQISAEAAAMYEMLVNTLGVSAGTY  87


>gi|333989806|ref|YP_004522420.1| PE family protein PE19 [Mycobacterium sp. JDM601]
 gi|333485774|gb|AEF35166.1| PE family protein PE19 [Mycobacterium sp. JDM601]
Length=99

 Score = 91.7 bits (226),  Expect = 3e-17, Method: Compositional matrix adjust.
 Identities = 54/87 (63%), Positives = 63/87 (73%), Gaps = 0/87 (0%)

Query  1   VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  60
           +SFV   PE LA+AA  L+ IG+   A N AAA PTT + P AADEVSALTAA F+AHA 
Sbjct  1   MSFVNTQPEALASAASELRGIGSVVAAQNMAAAGPTTVLPPAAADEVSALTAALFSAHAQ  60

Query  61  MYQSVSARAAAIHDQFVATLASSASSY  87
            YQ VSA+AAAIH+ FV TLA S+ SY
Sbjct  61  AYQEVSAQAAAIHEAFVRTLALSSESY  87


>gi|254365420|ref|ZP_04981465.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
 gi|134150933|gb|EBA42978.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
Length=275

 Score = 91.3 bits (225),  Expect = 4e-17, Method: Compositional matrix adjust.
 Identities = 59/99 (60%), Positives = 73/99 (74%), Gaps = 1/99 (1%)

Query  1   VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTT-GVVPPAADEVSALTAAHFAAHA  59
           +SF+   PE LAAAA  L++IG+  VA NAAAAAPTT GV+P AADE+S L A  F A+ 
Sbjct  1   MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60

Query  60  AMYQSVSARAAAIHDQFVATLASSASSYAATEVANAAAA  98
            +YQ VSA AAA++D FV TL  SA +YAATE AN++AA
Sbjct  61  TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAA  99


>gi|167968541|ref|ZP_02550818.1| PE family protein [Mycobacterium tuberculosis H37Ra]
Length=96

 Score = 91.3 bits (225),  Expect = 5e-17, Method: Compositional matrix adjust.
 Identities = 51/82 (63%), Positives = 57/82 (70%), Gaps = 0/82 (0%)

Query  6   AYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAAMYQSV  65
           A PEMLAA A  LQSI A   A NAA A PTTGVVP AAD VS LTA+ FAAHA +YQ++
Sbjct  3   AEPEMLAATAGELQSINAVARAGNAAVAGPTTGVVPAAADLVSLLTASQFAAHAQLYQAI  62

Query  66  SARAAAIHDQFVATLASSASSY  87
           SA A A+ +Q   TL  SA SY
Sbjct  63  SAEAMAVQEQLATTLGISAGSY  84


>gi|333990534|ref|YP_004523148.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
 gi|333486502|gb|AEF35894.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
Length=99

 Score = 90.9 bits (224),  Expect = 5e-17, Method: Compositional matrix adjust.
 Identities = 63/87 (73%), Positives = 70/87 (81%), Gaps = 0/87 (0%)

Query  1   VSFVMAYPEMLAAAADTLQSIGATTVASNAAAAAPTTGVVPPAADEVSALTAAHFAAHAA  60
           +SFV   PE LAAAA +L  IG+   A NAAAAAPTTGVVP AADEVSALTAA FAAHA 
Sbjct  1   MSFVNTQPEALAAAAGSLSGIGSALNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAT  60

Query  61  MYQSVSARAAAIHDQFVATLASSASSY  87
           MYQ VSA+AAAIH+ FVATL +SA+SY
Sbjct  61  MYQQVSAQAAAIHEMFVATLNNSATSY  87



Lambda     K      H
   0.311    0.112    0.288 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 129711308684


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40