BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1203c Length=194 Score E Sequences producing significant alignments: (Bits) Value gi|15608343|ref|NP_215719.1| hypothetical protein Rv1203c [Mycob... 372 1e-101 gi|339297831|gb|AEJ49941.1| hypothetical protein CCDC5180_1104 [... 371 2e-101 gi|339294191|gb|AEJ46302.1| hypothetical protein CCDC5079_1112 [... 371 3e-101 gi|340626217|ref|YP_004744669.1| hypothetical protein MCAN_12181... 370 4e-101 gi|240169017|ref|ZP_04747676.1| hypothetical protein MkanA1_0687... 244 5e-63 gi|183984206|ref|YP_001852497.1| hypothetical protein MMAR_4234 ... 238 3e-61 gi|118616716|ref|YP_905048.1| hypothetical protein MUL_0955 [Myc... 236 1e-60 gi|254231466|ref|ZP_04924793.1| hypothetical protein TBCG_01185 ... 213 1e-53 gi|342862089|ref|ZP_08718732.1| TPR repeat-containing protein [M... 187 5e-46 gi|333989819|ref|YP_004522433.1| hypothetical protein JDM601_117... 157 7e-37 gi|145222771|ref|YP_001133449.1| hypothetical protein Mflv_2183 ... 153 1e-35 gi|118469091|ref|YP_889338.1| hypothetica lprotein [Mycobacteriu... 149 2e-34 gi|145225058|ref|YP_001135736.1| regulatory protein LuxR [Mycoba... 143 1e-32 gi|315445427|ref|YP_004078306.1| ATP-dependent transcriptional r... 143 2e-32 gi|315443238|ref|YP_004076117.1| hypothetical protein Mspyr1_161... 142 3e-32 gi|336458623|gb|EGO37588.1| hypothetical protein MAPs_11300 [Myc... 140 1e-31 gi|126436810|ref|YP_001072501.1| AAA ATPase [Mycobacterium sp. J... 138 4e-31 gi|108800973|ref|YP_641170.1| ATPas [Mycobacterium sp. MCS] >gi|... 138 4e-31 gi|118462245|ref|YP_880593.1| TPR repeat-containing protein [Myc... 137 6e-31 gi|289761348|ref|ZP_06520726.1| conserved hypothetical protein [... 137 1e-30 gi|120405464|ref|YP_955293.1| ATPase [Mycobacterium vanbaalenii ... 135 4e-30 gi|254774226|ref|ZP_05215742.1| TPR repeat-containing protein [M... 100 8e-20 gi|296170109|ref|ZP_06851708.1| tetratricopeptide repeat family ... 94.0 9e-18 gi|333990125|ref|YP_004522739.1| hypothetical protein JDM601_148... 85.9 3e-15 gi|343924503|ref|ZP_08764052.1| putative LuxR family transcripti... 82.8 3e-14 gi|342859840|ref|ZP_08716493.1| hypothetical protein MCOL_13213 ... 81.3 7e-14 gi|254822071|ref|ZP_05227072.1| TPR repeat-containing protein [M... 74.7 6e-12 gi|254775035|ref|ZP_05216551.1| TPR repeat-containing protein [M... 68.9 3e-10 gi|118465517|ref|YP_881567.1| TPR repeat-containing protein [Myc... 68.9 4e-10 gi|118472503|ref|YP_886478.1| hypothetica lprotein [Mycobacteriu... 67.8 9e-10 gi|336462024|gb|EGO40873.1| ATP-dependent transcriptional regula... 67.4 1e-09 gi|111022383|ref|YP_705355.1| LuxR family transcriptional regula... 67.0 1e-09 gi|120401269|ref|YP_951098.1| regulatory protein LuxR [Mycobacte... 66.2 2e-09 gi|226364927|ref|YP_002782709.1| LuxR family transcriptional reg... 64.3 8e-09 gi|41407972|ref|NP_960808.1| hypothetical protein MAP1874c [Myco... 62.8 2e-08 gi|342859841|ref|ZP_08716494.1| TPR repeat-containing protein [M... 61.6 6e-08 gi|336462025|gb|EGO40874.1| hypothetical protein MAPs_25240 [Myc... 61.2 7e-08 gi|118466286|ref|YP_881565.1| TPR repeat-containing protein [Myc... 61.2 8e-08 gi|254775034|ref|ZP_05216550.1| TPR repeat-containing protein [M... 60.8 9e-08 gi|41407973|ref|NP_960809.1| hypothetical protein MAP1875c [Myco... 60.8 9e-08 gi|254823399|ref|ZP_05228400.1| hypothetical protein MintA_25951... 57.8 7e-07 gi|254823398|ref|ZP_05228399.1| TPR repeat-containing protein [M... 54.3 8e-06 gi|126433529|ref|YP_001069220.1| response regulator receiver pro... 52.8 2e-05 gi|325672603|ref|ZP_08152299.1| transcriptional regulator [Rhodo... 47.4 0.001 gi|312139507|ref|YP_004006843.1| luxr family transcriptional reg... 47.4 0.001 gi|256392793|ref|YP_003114357.1| LuxR family transcriptional reg... 46.6 0.002 gi|254822024|ref|ZP_05227025.1| hypothetical protein MintA_18972... 44.7 0.007 gi|118471754|ref|YP_888483.1| transcriptional regulator [Mycobac... 44.3 0.010 gi|169630986|ref|YP_001704635.1| LuxR transcriptional regulator ... 39.3 0.27 gi|120405019|ref|YP_954848.1| response regulator receiver protei... 38.5 0.48 >gi|15608343|ref|NP_215719.1| hypothetical protein Rv1203c [Mycobacterium tuberculosis H37Rv] gi|15840647|ref|NP_335684.1| hypothetical protein MT1241 [Mycobacterium tuberculosis CDC1551] gi|31792396|ref|NP_854889.1| hypothetical protein Mb1235c [Mycobacterium bovis AF2122/97] 72 more sequence titles Length=194 Score = 372 bits (956), Expect = 1e-101, Method: Compositional matrix adjust. Identities = 193/194 (99%), Positives = 194/194 (100%), Gaps = 0/194 (0%) Query 1 VLLAYVLITKGEFGAAASMLEPAAATLERTGYSWGPLSLMLLATAIAQQGHIAESAKTLQ 60 +LLAYVLITKGEFGAAASMLEPAAATLERTGYSWGPLSLMLLATAIAQQGHIAESAKTLQ Sbjct 1 MLLAYVLITKGEFGAAASMLEPAAATLERTGYSWGPLSLMLLATAIAQQGHIAESAKTLQ 60 Query 61 RAEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALCAWHN 120 RAEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALCAWHN Sbjct 61 RAEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALCAWHN 120 Query 121 AVRLGDIRAVDPVTRLAAEIDCTVGNILVKHARGLADGDAAELTAVAEELAGIGMAAAAA 180 AVRLGDIRAVDPVTRLAAEIDCTVGNILVKHARGLADGDAAELTAVAEELAGIGMAAAAA Sbjct 121 AVRLGDIRAVDPVTRLAAEIDCTVGNILVKHARGLADGDAAELTAVAEELAGIGMAAAAA 180 Query 181 DATKAAARLGPQQR 194 DATKAAARLGPQQR Sbjct 181 DATKAAARLGPQQR 194 >gi|339297831|gb|AEJ49941.1| hypothetical protein CCDC5180_1104 [Mycobacterium tuberculosis CCDC5180] Length=193 Score = 371 bits (953), Expect = 2e-101, Method: Compositional matrix adjust. Identities = 192/193 (99%), Positives = 193/193 (100%), Gaps = 0/193 (0%) Query 2 LLAYVLITKGEFGAAASMLEPAAATLERTGYSWGPLSLMLLATAIAQQGHIAESAKTLQR 61 +LAYVLITKGEFGAAASMLEPAAATLERTGYSWGPLSLMLLATAIAQQGHIAESAKTLQR Sbjct 1 MLAYVLITKGEFGAAASMLEPAAATLERTGYSWGPLSLMLLATAIAQQGHIAESAKTLQR 60 Query 62 AEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALCAWHNA 121 AEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALCAWHNA Sbjct 61 AEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALCAWHNA 120 Query 122 VRLGDIRAVDPVTRLAAEIDCTVGNILVKHARGLADGDAAELTAVAEELAGIGMAAAAAD 181 VRLGDIRAVDPVTRLAAEIDCTVGNILVKHARGLADGDAAELTAVAEELAGIGMAAAAAD Sbjct 121 VRLGDIRAVDPVTRLAAEIDCTVGNILVKHARGLADGDAAELTAVAEELAGIGMAAAAAD 180 Query 182 ATKAAARLGPQQR 194 ATKAAARLGPQQR Sbjct 181 ATKAAARLGPQQR 193 >gi|339294191|gb|AEJ46302.1| hypothetical protein CCDC5079_1112 [Mycobacterium tuberculosis CCDC5079] Length=193 Score = 371 bits (952), Expect = 3e-101, Method: Compositional matrix adjust. Identities = 191/193 (99%), Positives = 193/193 (100%), Gaps = 0/193 (0%) Query 2 LLAYVLITKGEFGAAASMLEPAAATLERTGYSWGPLSLMLLATAIAQQGHIAESAKTLQR 61 +LAYVLITKGEFGAAASMLEPAAATLERTGYSWGPLSLMLLATAIAQQGHIAESAKTLQR Sbjct 1 MLAYVLITKGEFGAAASMLEPAAATLERTGYSWGPLSLMLLATAIAQQGHIAESAKTLQR 60 Query 62 AEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALCAWHNA 121 AEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALCAWHNA Sbjct 61 AEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALCAWHNA 120 Query 122 VRLGDIRAVDPVTRLAAEIDCTVGNILVKHARGLADGDAAELTAVAEELAGIGMAAAAAD 181 VRLGDIRAVDPVTRLAAEIDCT+GNILVKHARGLADGDAAELTAVAEELAGIGMAAAAAD Sbjct 121 VRLGDIRAVDPVTRLAAEIDCTIGNILVKHARGLADGDAAELTAVAEELAGIGMAAAAAD 180 Query 182 ATKAAARLGPQQR 194 ATKAAARLGPQQR Sbjct 181 ATKAAARLGPQQR 193 >gi|340626217|ref|YP_004744669.1| hypothetical protein MCAN_12181 [Mycobacterium canettii CIPT 140010059] gi|340004407|emb|CCC43550.1| putative uncharacterized protein [Mycobacterium canettii CIPT 140010059] Length=767 Score = 370 bits (951), Expect = 4e-101, Method: Compositional matrix adjust. Identities = 193/194 (99%), Positives = 194/194 (100%), Gaps = 0/194 (0%) Query 1 VLLAYVLITKGEFGAAASMLEPAAATLERTGYSWGPLSLMLLATAIAQQGHIAESAKTLQ 60 VLLAYVLITKGEFGAAASMLEPAAATLERTGYSWGPLSLMLLATAIAQQGHIAESAKTLQ Sbjct 574 VLLAYVLITKGEFGAAASMLEPAAATLERTGYSWGPLSLMLLATAIAQQGHIAESAKTLQ 633 Query 61 RAEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALCAWHN 120 RAEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAA+EAARTAERAGQAAVALCAWHN Sbjct 634 RAEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAQEAARTAERAGQAAVALCAWHN 693 Query 121 AVRLGDIRAVDPVTRLAAEIDCTVGNILVKHARGLADGDAAELTAVAEELAGIGMAAAAA 180 AVRLGDIRAVDPVTRLAAEIDCTVGNILVKHARGLADGDAAELTAVAEELAGIGMAAAAA Sbjct 694 AVRLGDIRAVDPVTRLAAEIDCTVGNILVKHARGLADGDAAELTAVAEELAGIGMAAAAA 753 Query 181 DATKAAARLGPQQR 194 DATKAAARLGPQQR Sbjct 754 DATKAAARLGPQQR 767 >gi|240169017|ref|ZP_04747676.1| hypothetical protein MkanA1_06874 [Mycobacterium kansasii ATCC 12478] Length=750 Score = 244 bits (622), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 139/175 (80%), Positives = 152/175 (87%), Gaps = 0/175 (0%) Query 1 VLLAYVLITKGEFGAAASMLEPAAATLERTGYSWGPLSLMLLATAIAQQGHIAESAKTLQ 60 VLL +V++TKGEF AAA++LEPAAA LERTGYSWGPLSLMLLATAIAQQG IAESAK L+ Sbjct 557 VLLGHVMLTKGEFDAAATLLEPAAAELERTGYSWGPLSLMLLATAIAQQGRIAESAKALR 616 Query 61 RAEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALCAWHN 120 RAE RHGTKSALFAPEL LARAWT+AAA+D GAIA AREAARTAER GQ+ AL AWH+ Sbjct 617 RAETRHGTKSALFAPELMLARAWTKAAARDKAGAIADAREAARTAERGGQSTAALRAWHD 676 Query 121 AVRLGDIRAVDPVTRLAAEIDCTVGNILVKHARGLADGDAAELTAVAEELAGIGM 175 AVRLGDIRAV PVTRLA EIDC VG+++ K AR LADGDAA LTAVAEE A IGM Sbjct 677 AVRLGDIRAVVPVTRLATEIDCPVGDLVAKQARALADGDAAALTAVAEEPAAIGM 731 >gi|183984206|ref|YP_001852497.1| hypothetical protein MMAR_4234 [Mycobacterium marinum M] gi|183177532|gb|ACC42642.1| conserved hypothetical membrane protein [Mycobacterium marinum M] Length=714 Score = 238 bits (607), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 130/170 (77%), Positives = 145/170 (86%), Gaps = 0/170 (0%) Query 1 VLLAYVLITKGEFGAAASMLEPAAATLERTGYSWGPLSLMLLATAIAQQGHIAESAKTLQ 60 VLLA+VLI KGEFGAAA+MLEPAAA LERTGYSWGPLSLMLLATAIAQQG+IAE+AK L+ Sbjct 523 VLLAHVLIVKGEFGAAAAMLEPAAAELERTGYSWGPLSLMLLATAIAQQGNIAETAKALR 582 Query 61 RAEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALCAWHN 120 RAE RHGTKSALFAPEL LARAW +A +D GA+ REAAR AER Q+AVALC WH+ Sbjct 583 RAETRHGTKSALFAPELSLARAWAKATVRDQAGALFDTREAARAAERGKQSAVALCVWHD 642 Query 121 AVRLGDIRAVDPVTRLAAEIDCTVGNILVKHARGLADGDAAELTAVAEEL 170 AVRLGD RA+ PVTRLAAEIDC VGNI+V+HAR LAD DA L +VA+EL Sbjct 643 AVRLGDTRALAPVTRLAAEIDCKVGNIVVRHARALADNDAGALASVADEL 692 >gi|118616716|ref|YP_905048.1| hypothetical protein MUL_0955 [Mycobacterium ulcerans Agy99] gi|118568826|gb|ABL03577.1| conserved hypothetical membrane protein [Mycobacterium ulcerans Agy99] Length=701 Score = 236 bits (603), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 127/170 (75%), Positives = 144/170 (85%), Gaps = 0/170 (0%) Query 1 VLLAYVLITKGEFGAAASMLEPAAATLERTGYSWGPLSLMLLATAIAQQGHIAESAKTLQ 60 VLLA+VLI KGEFG AA+M+EPAAA LERTGYSWGPLSLMLLATAIAQQG+IAE+AK L+ Sbjct 510 VLLAHVLIVKGEFGTAAAMVEPAAAELERTGYSWGPLSLMLLATAIAQQGNIAETAKALR 569 Query 61 RAEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALCAWHN 120 RAE RHGTKSALFAPEL LARAW +A +D GA+ REAAR AER Q+AVALC WH+ Sbjct 570 RAETRHGTKSALFAPELSLARAWAKATVRDQAGALFDTREAARAAERGKQSAVALCVWHD 629 Query 121 AVRLGDIRAVDPVTRLAAEIDCTVGNILVKHARGLADGDAAELTAVAEEL 170 AVRLGD RA+ PVTRLAAEIDC VGNI+V+HAR LA+ DA L +VA+EL Sbjct 630 AVRLGDTRALAPVTRLAAEIDCKVGNIVVRHARALANNDAGALASVADEL 679 >gi|254231466|ref|ZP_04924793.1| hypothetical protein TBCG_01185 [Mycobacterium tuberculosis C] gi|124600525|gb|EAY59535.1| hypothetical protein TBCG_01185 [Mycobacterium tuberculosis C] Length=188 Score = 213 bits (541), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 139/194 (72%), Positives = 144/194 (75%), Gaps = 6/194 (3%) Query 1 VLLAYVLITKGEFGAAASMLEPAAATLERTGYSWGPLSLMLLATAIAQQGHIAESAKTLQ 60 +LLAYVLITKGEFGAAASMLEPAAATLERTGY Sbjct 1 MLLAYVLITKGEFGAAASMLEPAAATLERTGYX------XXXXXXXXXXXXXXXXXXXXX 54 Query 61 RAEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALCAWHN 120 P+LG+ARAW RAAA DMTG+ REAART+ERA QAAVA CAWHN Sbjct 55 XXXXXXXXXXXXSHPKLGMARAWPRAAAPDMTGSSGPPREAARTSERARQAAVAPCAWHN 114 Query 121 AVRLGDIRAVDPVTRLAAEIDCTVGNILVKHARGLADGDAAELTAVAEELAGIGMAAAAA 180 AVRLGDIRAVDPVTRLAAEIDCTVGNILVKHARGLADGDAAELTAVAEELAGIGMAAAAA Sbjct 115 AVRLGDIRAVDPVTRLAAEIDCTVGNILVKHARGLADGDAAELTAVAEELAGIGMAAAAA 174 Query 181 DATKAAARLGPQQR 194 DATKAAARLGPQQR Sbjct 175 DATKAAARLGPQQR 188 >gi|342862089|ref|ZP_08718732.1| TPR repeat-containing protein [Mycobacterium colombiense CECT 3035] gi|342130393|gb|EGT83708.1| TPR repeat-containing protein [Mycobacterium colombiense CECT 3035] Length=692 Score = 187 bits (476), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 128/190 (68%), Positives = 144/190 (76%), Gaps = 0/190 (0%) Query 1 VLLAYVLITKGEFGAAASMLEPAAATLERTGYSWGPLSLMLLATAIAQQGHIAESAKTLQ 60 VLLA+VLI+KGEF +AA +L PAAATLERTGYSWGPLSL LLATA AQQG A +AK L Sbjct 499 VLLAHVLISKGEFASAAELLGPAAATLERTGYSWGPLSLTLLATAQAQQGDTAAAAKALS 558 Query 61 RAEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALCAWHN 120 RAE+RHGTKSALFAPELG+ARAW A +D GA+AAAR+AAR AER GQ VA+ WH Sbjct 559 RAESRHGTKSALFAPELGVARAWRLALVRDTHGAVAAARDAARMAERGGQRGVAVRVWHE 618 Query 121 AVRLGDIRAVDPVTRLAAEIDCTVGNILVKHARGLADGDAAELTAVAEELAGIGMAAAAA 180 +VRLGD RA DP+ RL EIDC G I + HAR LA GD A L AV++EL IGM AAAA Sbjct 619 SVRLGDTRAADPLARLCDEIDCVAGRIALAHARALAAGDDAGLRAVSDELTSIGMHAAAA 678 Query 181 DATKAAARLG 190 DA A R G Sbjct 679 DAAAQAQRCG 688 >gi|333989819|ref|YP_004522433.1| hypothetical protein JDM601_1179 [Mycobacterium sp. JDM601] gi|333485787|gb|AEF35179.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=686 Score = 157 bits (397), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 102/146 (70%), Positives = 116/146 (80%), Gaps = 0/146 (0%) Query 1 VLLAYVLITKGEFGAAASMLEPAAATLERTGYSWGPLSLMLLATAIAQQGHIAESAKTLQ 60 VL+A VLI GEF AAA +L PAAATLERTGYSWGPLSL LLATA+A+Q IA +AK L Sbjct 528 VLVAQVLIAVGEFDAAAQLLAPAAATLERTGYSWGPLSLTLLATALARQSDIAGAAKALS 587 Query 61 RAEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALCAWHN 120 RAE+RHGTKSALFAPELG+ARAW RA +D GA+ AAR+AAR AER+GQ AVAL AW Sbjct 588 RAESRHGTKSALFAPELGMARAWQRAGMRDRHGAVTAARDAARMAERSGQYAVALQAWQV 647 Query 121 AVRLGDIRAVDPVTRLAAEIDCTVGN 146 AV+LGD RAVDP+ RL E+DC G Sbjct 648 AVQLGDARAVDPLARLCEEVDCAFGR 673 >gi|145222771|ref|YP_001133449.1| hypothetical protein Mflv_2183 [Mycobacterium gilvum PYR-GCK] gi|145215257|gb|ABP44661.1| Tetratricopeptide TPR_4 [Mycobacterium gilvum PYR-GCK] Length=660 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 86/146 (59%), Positives = 100/146 (69%), Gaps = 0/146 (0%) Query 1 VLLAYVLITKGEFGAAASMLEPAAATLERTGYSWGPLSLMLLATAIAQQGHIAESAKTLQ 60 VL+A VLI GE AAS+L AAATL TGYSWGPL+ MLLA A+ Q G E+ K L Sbjct 511 VLVADVLIASGELPRAASLLREAAATLAPTGYSWGPLAWMLLAQALGQLGLTVEAGKALS 570 Query 61 RAEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALCAWHN 120 RAE+RHG KS LFAPEL LARAWT A +D GA AA+REA R AER GQ AVAL A Sbjct 571 RAESRHGLKSMLFAPELALARAWTMVARRDTHGAAAASREAVRAAERGGQTAVALRAARE 630 Query 121 AVRLGDIRAVDPVTRLAAEIDCTVGN 146 +R+GD RA + + RL+ E+DC G Sbjct 631 GIRVGDPRAAETLHRLSTELDCAFGR 656 >gi|118469091|ref|YP_889338.1| hypothetica lprotein [Mycobacterium smegmatis str. MC2 155] gi|118170378|gb|ABK71274.1| tetratricopeptide repeat family protein [Mycobacterium smegmatis str. MC2 155] Length=691 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 95/175 (55%), Positives = 117/175 (67%), Gaps = 2/175 (1%) Query 1 VLLAYVLITKGEFGAAASMLEPAAATLERTGYSWGPLSLMLLATAIAQQGHIAESAKTLQ 60 VLLA VLI +G+ A ++L A TL TGYSWGPL+ MLLA A+ Q+G E+ KTL Sbjct 506 VLLADVLIVRGQLDEAVALLRRATVTLAPTGYSWGPLAWMLLAQALGQRGMPVEAGKTLS 565 Query 61 RAEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALCAWHN 120 RAE+RHG KS LFAPEL LARAWT A +D A+A AREAA+ AER GQ+AVAL A H+ Sbjct 566 RAESRHGLKSMLFAPELALARAWTCFARKDPVTAVAGAREAAKAAERGGQSAVALRALHD 625 Query 121 AVRLGDIRAVDPVTRLAAEIDCTVGNILVKHARGLADGDAAELTAVAEELAGIGM 175 AVRLGD RA D + R+ ++ CT ++ HA L GDA+ L VA +GM Sbjct 626 AVRLGDTRAADALARI--DLTCTFADVTRAHAAALTAGDASALNDVAARYRDLGM 678 >gi|145225058|ref|YP_001135736.1| regulatory protein LuxR [Mycobacterium gilvum PYR-GCK] gi|145217544|gb|ABP46948.1| regulatory protein, LuxR [Mycobacterium gilvum PYR-GCK] Length=865 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 78/153 (51%), Positives = 101/153 (67%), Gaps = 0/153 (0%) Query 1 VLLAYVLITKGEFGAAASMLEPAAATLERTGYSWGPLSLMLLATAIAQQGHIAESAKTLQ 60 VLL + L+ G FG A ++L AAA L TGYSWGPL+L LA A+ QQG A+++ L Sbjct 572 VLLGHTLLASGRFGDAVTLLRQAAAALTYTGYSWGPLALTGLAQALGQQGRAADASAVLT 631 Query 61 RAEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALCAWHN 120 RAEA HG +SAL+AP+L LARAWT AAA+D+ GA+A+AR+A A ++GQ AVAL A + Sbjct 632 RAEASHGMRSALYAPDLALARAWTLAAARDLRGAVASARDAVHAAVQSGQDAVALRALQD 691 Query 121 AVRLGDIRAVDPVTRLAAEIDCTVGNILVKHAR 153 RLGD + RL+ I C G + V H R Sbjct 692 CARLGDTHGLATAVRLSDRIGCVTGPLCVAHLR 724 >gi|315445427|ref|YP_004078306.1| ATP-dependent transcriptional regulator [Mycobacterium sp. Spyr1] gi|315263730|gb|ADU00472.1| ATP-dependent transcriptional regulator [Mycobacterium sp. Spyr1] Length=865 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 78/153 (51%), Positives = 101/153 (67%), Gaps = 0/153 (0%) Query 1 VLLAYVLITKGEFGAAASMLEPAAATLERTGYSWGPLSLMLLATAIAQQGHIAESAKTLQ 60 VLL + L+ G FG A ++L AAA L TGYSWGPL+L LA A+ QQG A+++ L Sbjct 572 VLLGHTLLASGRFGDAVTLLRQAAAALTYTGYSWGPLALTGLAQALGQQGRAADASAVLT 631 Query 61 RAEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALCAWHN 120 RAEA HG +SAL+AP+L LARAWT AAA+D+ GA+A+AR+A A ++GQ AVAL A + Sbjct 632 RAEASHGMRSALYAPDLALARAWTLAAARDLRGAVASARDAVHAAVQSGQDAVALRALQD 691 Query 121 AVRLGDIRAVDPVTRLAAEIDCTVGNILVKHAR 153 RLGD + RL+ I C G + V H R Sbjct 692 CARLGDTHGLATAVRLSDRIGCVTGPLCVAHLR 724 >gi|315443238|ref|YP_004076117.1| hypothetical protein Mspyr1_16150 [Mycobacterium sp. Spyr1] gi|315261541|gb|ADT98282.1| hypothetical protein Mspyr1_16150 [Mycobacterium sp. Spyr1] Length=651 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 84/146 (58%), Positives = 98/146 (68%), Gaps = 0/146 (0%) Query 1 VLLAYVLITKGEFGAAASMLEPAAATLERTGYSWGPLSLMLLATAIAQQGHIAESAKTLQ 60 VL+A VLI GE A S+L AAA L TGYSWGPL+ MLLA A+ Q E+ K L Sbjct 502 VLIADVLIAAGELPRAVSLLREAAAALAPTGYSWGPLAWMLLAQALGQLRQTVEAGKALS 561 Query 61 RAEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALCAWHN 120 RAE+RHG KS LFAPEL LARAWT A +D GA+AA+REA R AER GQ AVAL A Sbjct 562 RAESRHGLKSMLFAPELALARAWTMVARRDTHGAVAASREAVRAAERGGQVAVALRAARE 621 Query 121 AVRLGDIRAVDPVTRLAAEIDCTVGN 146 +R+GD RA + + RL AE+DC G Sbjct 622 GIRVGDPRAAETLHRLTAEVDCAFGR 647 >gi|336458623|gb|EGO37588.1| hypothetical protein MAPs_11300 [Mycobacterium avium subsp. paratuberculosis S397] Length=712 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 115/175 (66%), Positives = 131/175 (75%), Gaps = 0/175 (0%) Query 1 VLLAYVLITKGEFGAAASMLEPAAATLERTGYSWGPLSLMLLATAIAQQGHIAESAKTLQ 60 VLLA+VL+ +GEF +AA +L PAAATLERTGYSWGPLSL LLATA+AQ G A +AK L Sbjct 517 VLLAHVLLAEGEFASAAGLLGPAAATLERTGYSWGPLSLTLLATALAQLGDTAATAKALS 576 Query 61 RAEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALCAWHN 120 RAE RHGTKSALFAPELG+ARA A +D GA+AAAR+AAR AER GQ AVA+ WH Sbjct 577 RAETRHGTKSALFAPELGVARAHRLALMRDAHGAVAAARDAARMAERGGQRAVAVRVWHE 636 Query 121 AVRLGDIRAVDPVTRLAAEIDCTVGNILVKHARGLADGDAAELTAVAEELAGIGM 175 AVRLGD RA +P+ RL EIDC I + HAR LA GD A L AV+ EL IGM Sbjct 637 AVRLGDTRAAEPLARLCDEIDCAAARIALAHARALAAGDEAALLAVSGELTSIGM 691 >gi|126436810|ref|YP_001072501.1| AAA ATPase [Mycobacterium sp. JLS] gi|126236610|gb|ABO00011.1| AAA ATPase [Mycobacterium sp. JLS] Length=690 Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 103/186 (56%), Positives = 124/186 (67%), Gaps = 2/186 (1%) Query 1 VLLAYVLITKGEFGAAASMLEPAAATLERTGYSWGPLSLMLLATAIAQQGHIAESAKTLQ 60 VL+A VLI +G+ AA++L AAA L TGYSWGPL+ MLLA A+ ++G E+ K L Sbjct 502 VLIADVLIARGDVDGAAALLRDAAAALAPTGYSWGPLAWMLLAQALGERGAAVEAGKALA 561 Query 61 RAEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALCAWHN 120 RAE+RHG KS LFAPELGL RAWT +A +D GA+AAAR+AARTAER GQ AVAL A H Sbjct 562 RAESRHGLKSMLFAPELGLGRAWTMSARRDTHGAVAAARDAARTAERGGQLAVALRALHV 621 Query 121 AVRLGDIRAVDPVTRLAAEIDCTVGNILVKHARGLADGDAAELTAVAEELAGIGMAAAAA 180 AVRLGD RA D + RL +DC G I + HAR D L A A IG+ +AA Sbjct 622 AVRLGDARAADHMARLG--VDCEFGRIALLHARAFTAADPVGLDEAAGAFAAIGLQGSAA 679 Query 181 DATKAA 186 DA + A Sbjct 680 DAERQA 685 >gi|108800973|ref|YP_641170.1| ATPas [Mycobacterium sp. MCS] gi|119870113|ref|YP_940065.1| AAA ATPase [Mycobacterium sp. KMS] gi|108771392|gb|ABG10114.1| ATPase [Mycobacterium sp. MCS] gi|119696202|gb|ABL93275.1| AAA ATPase [Mycobacterium sp. KMS] Length=690 Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 103/186 (56%), Positives = 124/186 (67%), Gaps = 2/186 (1%) Query 1 VLLAYVLITKGEFGAAASMLEPAAATLERTGYSWGPLSLMLLATAIAQQGHIAESAKTLQ 60 VL+A VLI +G+ AA++L AAA L TGYSWGPL+ MLLA A+ ++G E+ K L Sbjct 502 VLIADVLIARGDVDGAAALLRDAAAALAPTGYSWGPLAWMLLAQALGERGAAVEAGKALA 561 Query 61 RAEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALCAWHN 120 RAE+RHG KS LFAPELGL RAWT +A +D GA+AAAR+AARTAER GQ AVAL A H Sbjct 562 RAESRHGLKSMLFAPELGLGRAWTMSARRDTHGAVAAARDAARTAERGGQLAVALRALHV 621 Query 121 AVRLGDIRAVDPVTRLAAEIDCTVGNILVKHARGLADGDAAELTAVAEELAGIGMAAAAA 180 AVRLGD RA D + RL +DC G I + HAR D L A A IG+ +AA Sbjct 622 AVRLGDARAADHMARLG--VDCEFGRIALLHARAFTAADPVGLDEAAGAFAAIGLQGSAA 679 Query 181 DATKAA 186 DA + A Sbjct 680 DAERQA 685 >gi|118462245|ref|YP_880593.1| TPR repeat-containing protein [Mycobacterium avium 104] gi|118163532|gb|ABK64429.1| tetratricopeptide repeat family protein [Mycobacterium avium 104] Length=712 Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 116/175 (67%), Positives = 133/175 (76%), Gaps = 0/175 (0%) Query 1 VLLAYVLITKGEFGAAASMLEPAAATLERTGYSWGPLSLMLLATAIAQQGHIAESAKTLQ 60 VL+A+VL+T+GEF +AA++L PAAATLERTGYSWGPLSL LLATA+AQ G A +AK L Sbjct 517 VLVAHVLLTEGEFASAAALLGPAAATLERTGYSWGPLSLTLLATALAQLGDTAATAKALS 576 Query 61 RAEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALCAWHN 120 RAE RHGTKSALFAPELG+ARA A +D GA+AAAR+AAR AER GQ AVA WH Sbjct 577 RAETRHGTKSALFAPELGVARAHRLALMRDAHGAVAAARDAARMAERGGQRAVAARVWHE 636 Query 121 AVRLGDIRAVDPVTRLAAEIDCTVGNILVKHARGLADGDAAELTAVAEELAGIGM 175 AVRLGD RA +P+ RL EIDC I + HAR LA GD A L AV+EEL IGM Sbjct 637 AVRLGDTRAAEPLARLCDEIDCAAARIALAHARALAAGDEAALLAVSEELTSIGM 691 >gi|289761348|ref|ZP_06520726.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|289708854|gb|EFD72870.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] Length=71 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 70/71 (99%), Positives = 71/71 (100%), Gaps = 0/71 (0%) Query 124 LGDIRAVDPVTRLAAEIDCTVGNILVKHARGLADGDAAELTAVAEELAGIGMAAAAADAT 183 +GDIRAVDPVTRLAAEIDCTVGNILVKHARGLADGDAAELTAVAEELAGIGMAAAAADAT Sbjct 1 MGDIRAVDPVTRLAAEIDCTVGNILVKHARGLADGDAAELTAVAEELAGIGMAAAAADAT 60 Query 184 KAAARLGPQQR 194 KAAARLGPQQR Sbjct 61 KAAARLGPQQR 71 >gi|120405464|ref|YP_955293.1| ATPase [Mycobacterium vanbaalenii PYR-1] gi|119958282|gb|ABM15287.1| ATPase [Mycobacterium vanbaalenii PYR-1] Length=640 Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 84/146 (58%), Positives = 100/146 (69%), Gaps = 0/146 (0%) Query 1 VLLAYVLITKGEFGAAASMLEPAAATLERTGYSWGPLSLMLLATAIAQQGHIAESAKTLQ 60 VL+A VLI GE A S+L AA TL TGYSWGPL+ MLLA A+ + ++ K L Sbjct 485 VLVADVLIATGELSRAVSLLREAATTLAPTGYSWGPLAWMLLAQALGRLDQTVDAGKALS 544 Query 61 RAEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALCAWHN 120 RAE+RHG KS LFAPEL LARAWT AA D GA+AAAREA + AER GQ AVAL + Sbjct 545 RAESRHGLKSMLFAPELALARAWTTAARHDTHGAVAAAREAVKAAERGGQRAVALRVALD 604 Query 121 AVRLGDIRAVDPVTRLAAEIDCTVGN 146 RLGD RA+D ++RLAA++DC G Sbjct 605 GARLGDARALDTLSRLAADVDCAFGR 630 >gi|254774226|ref|ZP_05215742.1| TPR repeat-containing protein [Mycobacterium avium subsp. avium ATCC 25291] Length=322 Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 88/125 (71%), Positives = 101/125 (81%), Gaps = 0/125 (0%) Query 1 VLLAYVLITKGEFGAAASMLEPAAATLERTGYSWGPLSLMLLATAIAQQGHIAESAKTLQ 60 VL+A+VL+T+GEF +AA++L PAAATLERTGYSWGPLSL LLATA+AQ G A +AK L Sbjct 198 VLVAHVLLTEGEFASAAALLGPAAATLERTGYSWGPLSLTLLATALAQLGDTAATAKALS 257 Query 61 RAEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALCAWHN 120 RAE RHGTKSALFAPELG+ARA A +D GA+AAAR+AAR AER GQ AVA WH Sbjct 258 RAETRHGTKSALFAPELGVARAHRLALMRDAHGAVAAARDAARMAERGGQRAVAARVWHE 317 Query 121 AVRLG 125 AVRLG Sbjct 318 AVRLG 322 >gi|296170109|ref|ZP_06851708.1| tetratricopeptide repeat family protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895211|gb|EFG74924.1| tetratricopeptide repeat family protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=607 Score = 94.0 bits (232), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 66/90 (74%), Positives = 76/90 (85%), Gaps = 0/90 (0%) Query 1 VLLAYVLITKGEFGAAASMLEPAAATLERTGYSWGPLSLMLLATAIAQQGHIAESAKTLQ 60 VLLA+VL+ GEF AA++L PAAATLERTGYSWGPLSL LLATA+AQQG IA + K L Sbjct 517 VLLAHVLLADGEFARAAALLGPAAATLERTGYSWGPLSLTLLATALAQQGDIAAAGKALG 576 Query 61 RAEARHGTKSALFAPELGLARAWTRAAAQD 90 RAE+RHGTKSALFAPELG+ARAW A+ +D Sbjct 577 RAESRHGTKSALFAPELGVARAWRLASMRD 606 >gi|333990125|ref|YP_004522739.1| hypothetical protein JDM601_1485 [Mycobacterium sp. JDM601] gi|333486093|gb|AEF35485.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=883 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 63/175 (36%), Positives = 93/175 (54%), Gaps = 1/175 (0%) Query 1 VLLAYVLITKGEFGAAASMLEPAAATLERTGYS-WGPLSLMLLATAIAQQGHIAESAKTL 59 VL+ V + +G+ AAS+ + + L S W L+ A A A +G+ ++ L Sbjct 593 VLVGLVHLARGQLPLAASLFQDSTPVLTNAAPSLWPMLANAWSAQAEAARGNAVSASIAL 652 Query 60 QRAEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALCAWH 119 + E +G + A F PE+ LARAW R A + A + A AA+ A R+G AAV + A H Sbjct 653 RHCEEAYGPQIAAFLPEVELARAWERVAHGQTSDARSLALRAAQIARRSGMAAVEMRALH 712 Query 120 NAVRLGDIRAVDPVTRLAAEIDCTVGNILVKHARGLADGDAAELTAVAEELAGIG 174 AVR GD D + LA +D + N + HARGLAD +A L+A ++ A +G Sbjct 713 TAVRFGDRSHADRLADLAETLDAPLPNAIAAHARGLADRNADLLSATSDRFAIMG 767 >gi|343924503|ref|ZP_08764052.1| putative LuxR family transcriptional regulator [Gordonia alkanivorans NBRC 16433] gi|343765647|dbj|GAA10978.1| putative LuxR family transcriptional regulator [Gordonia alkanivorans NBRC 16433] Length=873 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/177 (32%), Positives = 91/177 (52%), Gaps = 2/177 (1%) Query 1 VLLAYVLITKGEFGAAASMLEPAAATLERTGYS--WGPLSLMLLATAIAQQGHIAESAKT 58 +L+A V +++G + +E ATL+ +S W + + L A++ G + +A+ Sbjct 569 ILVAAVELSRGACVSVTRRMEQTLATLDSGEFSESWNFPAHIFLIQALSALGQVDRAAEV 628 Query 59 LQRAEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALCAW 118 L++A AR+G A+F P L +A+AW AAA +T A+A R A Q A+ A Sbjct 629 LEKARARYGRHVAIFGPMLAIAQAWQSAAAGTITPAVALLRRTAEETRETEQLAIEAEAL 688 Query 119 HNAVRLGDIRAVDPVTRLAAEIDCTVGNILVKHARGLADGDAAELTAVAEELAGIGM 175 H+A R GD +T LA +D + + +HA LA GDA EL + + +G+ Sbjct 689 HSAARFGDATVAQRLTELAGLVDGPLAPLYARHAIALAAGDAVELDLCSADFESLGV 745 >gi|342859840|ref|ZP_08716493.1| hypothetical protein MCOL_13213 [Mycobacterium colombiense CECT 3035] gi|342132972|gb|EGT86192.1| hypothetical protein MCOL_13213 [Mycobacterium colombiense CECT 3035] Length=867 Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 67/174 (39%), Positives = 88/174 (51%), Gaps = 1/174 (0%) Query 2 LLAYVLITKGEFGAAASMLEPAAATLERTGYS-WGPLSLMLLATAIAQQGHIAESAKTLQ 60 +L +T+GE AA + L + + L + S W + LLA A +G A +A LQ Sbjct 580 MLGLAQVTRGELPAACATLSRSISQLSQGFPSPWLLVVAALLAQAEGTRGDDAAAAAALQ 639 Query 61 RAEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALCAWHN 120 RA+ +G A+F PEL LARAW RAAA D GA A +AA+ A AG + A H Sbjct 640 RAQETYGPHVAVFLPELELARAWERAAAGDTAGAQTHAAKAAQVARTAGMHLAEMRARHA 699 Query 121 AVRLGDIRAVDPVTRLAAEIDCTVGNILVKHARGLADGDAAELTAVAEELAGIG 174 AVR GD V LA ++ + +HARGLA D L A A A +G Sbjct 700 AVRFGDRSQATRVDELARTLNSASAQAVAEHARGLAQHDGDLLDAAAHRFAELG 753 >gi|254822071|ref|ZP_05227072.1| TPR repeat-containing protein [Mycobacterium intracellulare ATCC 13950] Length=248 Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 49/70 (70%), Positives = 57/70 (82%), Gaps = 0/70 (0%) Query 1 VLLAYVLITKGEFGAAASMLEPAAATLERTGYSWGPLSLMLLATAIAQQGHIAESAKTLQ 60 VLLA+VL+ GEF +AA +L PA ATLERTGYSWGPLSL LLATA++Q G A +AK L Sbjct 179 VLLAHVLLAGGEFASAADILIPATATLERTGYSWGPLSLTLLATALSQLGDTAAAAKALS 238 Query 61 RAEARHGTKS 70 RAE+RHGTKS Sbjct 239 RAESRHGTKS 248 >gi|254775035|ref|ZP_05216551.1| TPR repeat-containing protein [Mycobacterium avium subsp. avium ATCC 25291] Length=867 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 66/178 (38%), Positives = 92/178 (52%), Gaps = 9/178 (5%) Query 2 LLAYVLITKGEFGAAASMLEPAAATLERTGYSWGPLSLMLLATAIAQQ-----GHIAESA 56 +L + +T+GE A + L+ + + L + G+ PL L+ A+ Q G A +A Sbjct 580 MLGVLQLTRGELQEACATLDRSISQLSQ-GF---PLPWQLVVGALQAQAEGARGDSAAAA 635 Query 57 KTLQRAEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALC 116 L+R E +G A+F PEL LARAW RAAA D GA A +AA+TA +AG V + Sbjct 636 VALRRVEEAYGPHVAVFLPELELARAWERAAAGDTAGAQTQAMQAAQTARKAGMHLVEMR 695 Query 117 AWHNAVRLGDIRAVDPVTRLAAEIDCTVGNILVKHARGLADGDAAELTAVAEELAGIG 174 A H A+R GD V LA+ ++ + HARGLA D L A A A +G Sbjct 696 ARHAALRFGDRAQAARVDELASILNSPSAQAVAGHARGLAQHDGDLLDAAAHRFADLG 753 >gi|118465517|ref|YP_881567.1| TPR repeat-containing protein [Mycobacterium avium 104] gi|118166804|gb|ABK67701.1| tetratricopeptide repeat family protein [Mycobacterium avium 104] Length=863 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 66/178 (38%), Positives = 92/178 (52%), Gaps = 9/178 (5%) Query 2 LLAYVLITKGEFGAAASMLEPAAATLERTGYSWGPLSLMLLATAIAQQ-----GHIAESA 56 +L + +T+GE A + L+ + + L + G+ PL L+ A+ Q G A +A Sbjct 576 MLGVLQLTRGELQEACATLDRSISQLSQ-GF---PLPWQLVVGALQAQAEGARGDSAAAA 631 Query 57 KTLQRAEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALC 116 L+R E +G A+F PEL LARAW RAAA D GA A +AA+TA +AG V + Sbjct 632 VALRRVEEAYGPHVAVFLPELELARAWERAAAGDTAGAQTQAMQAAQTARKAGMHLVEMR 691 Query 117 AWHNAVRLGDIRAVDPVTRLAAEIDCTVGNILVKHARGLADGDAAELTAVAEELAGIG 174 A H A+R GD V LA+ ++ + HARGLA D L A A A +G Sbjct 692 ARHAALRFGDRAQAARVDELASILNSPSAQAVAGHARGLAQHDGDLLDAAAHRFADLG 749 >gi|118472503|ref|YP_886478.1| hypothetica lprotein [Mycobacterium smegmatis str. MC2 155] gi|118173790|gb|ABK74686.1| tetratricopeptide repeat family protein [Mycobacterium smegmatis str. MC2 155] Length=872 Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 62/154 (41%), Positives = 83/154 (54%), Gaps = 6/154 (3%) Query 40 MLLATAIAQ----QGHIAESAKTLQRAEARHGTKSALFAPELGLARAWTRAAAQDMTGAI 95 ML+A+ +AQ +G+ +A L +AEA G + +FAPEL LARAW AAA + + A Sbjct 619 MLVASWLAQAEGARGNAEAAAVALTKAEAEVGPQVEVFAPELELARAWRAAAAGETSRAQ 678 Query 96 AAAREAARTAERAGQAAVALCAWHNAVRLGDIRAVDP-VTRLAAEIDCTVGNILVKHARG 154 A AA+ A AG AV L A H + R GD R VD + +L E+DC +G + H+ G Sbjct 679 HHAVLAAQNAHAAGMTAVELTALHTSTRFGD-RTVDARIQQLPTELDCPLGEAIALHSSG 737 Query 155 LADGDAAELTAVAEELAGIGMAAAAADATKAAAR 188 LA D L A+ IG A DA A+R Sbjct 738 LAGHDGNRLVTAADRFERIGAMVLAGDAAAHASR 771 >gi|336462024|gb|EGO40873.1| ATP-dependent transcriptional regulator [Mycobacterium avium subsp. paratuberculosis S397] Length=879 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 65/178 (37%), Positives = 91/178 (52%), Gaps = 9/178 (5%) Query 2 LLAYVLITKGEFGAAASMLEPAAATLERTGYSWGPLSLMLLATAIAQQ-----GHIAESA 56 +L + +T+GE A + L+ + + L + G+ PL L+ A+ Q G A +A Sbjct 592 MLDVLQLTRGELQDACATLDRSISQLSQ-GF---PLPWQLVVGALQAQAEGARGDSAAAA 647 Query 57 KTLQRAEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALC 116 L+R E +G A+F PEL L RAW RAAA D GA A +AA+TA +AG V + Sbjct 648 VALRRVEEAYGPHVAVFLPELELDRAWERAAAGDTAGAQTQAMQAAQTARKAGMHLVEMR 707 Query 117 AWHNAVRLGDIRAVDPVTRLAAEIDCTVGNILVKHARGLADGDAAELTAVAEELAGIG 174 A H A+R GD V LA+ ++ + HARGLA D L A A A +G Sbjct 708 ARHAALRFGDRAQAARVDELASILNSPSAQAVADHARGLAQHDGDLLDAAAHRFADLG 765 >gi|111022383|ref|YP_705355.1| LuxR family transcriptional regulator [Rhodococcus jostii RHA1] gi|110821913|gb|ABG97197.1| probable transcriptional regulator, LuxR family protein [Rhodococcus jostii RHA1] Length=881 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 55/178 (31%), Positives = 83/178 (47%), Gaps = 4/178 (2%) Query 1 VLLAYVLITKGEFGAAASMLEPAAATLER----TGYSWGPLSLMLLATAIAQQGHIAESA 56 +L+ V + +G F AA LE A A L SW + + L A A+ G I E+ Sbjct 589 ILVGTVELARGRFTDAAGRLEQAIAALNVGDTADAISWSFPAYIALGQAYAELGRIHEAE 648 Query 57 KTLQRAEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALC 116 +A AR+G A+F P+L ++ AW AA + + A+ ++ AA +A +GQ + + Sbjct 649 DITAQARARNGRHVAVFGPQLAMSEAWLAAARGETSRAVDLSQSAAESACASGQFGIEVV 708 Query 117 AWHNAVRLGDIRAVDPVTRLAAEIDCTVGNILVKHARGLADGDAAELTAVAEELAGIG 174 A H A R GD A + L D + I K A + GD + + A E IG Sbjct 709 ALHLATRFGDTTAATRLAELTELCDGDLVTIAAKQAVAVGAGDGCGVASAAAEFERIG 766 >gi|120401269|ref|YP_951098.1| regulatory protein LuxR [Mycobacterium vanbaalenii PYR-1] gi|119954087|gb|ABM11092.1| regulatory protein, LuxR [Mycobacterium vanbaalenii PYR-1] Length=884 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/109 (39%), Positives = 57/109 (53%), Gaps = 0/109 (0%) Query 66 HGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALCAWHNAVRLG 125 +G + A+F PEL LAR+W RA T A A AA+TA G AV +CA H AVR G Sbjct 661 NGPQVAVFVPELELARSWHRACVGQTTTARDHALRAAQTARVKGMWAVEMCALHTAVRFG 720 Query 126 DIRAVDPVTRLAAEIDCTVGNILVKHARGLADGDAAELTAVAEELAGIG 174 D + + AA++D + + H GL+D D L A A+ +G Sbjct 721 DRSQSARLRQCAAQLDSPLAEAIAAHGIGLSDHDGDRLDAAADMFDRLG 769 >gi|226364927|ref|YP_002782709.1| LuxR family transcriptional regulator [Rhodococcus opacus B4] gi|226243416|dbj|BAH53764.1| putative LuxR family transcriptional regulator [Rhodococcus opacus B4] Length=949 Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 48/151 (32%), Positives = 75/151 (50%), Gaps = 4/151 (2%) Query 1 VLLAYVLITKGEFGAAASMLEPAAATLER----TGYSWGPLSLMLLATAIAQQGHIAESA 56 +L+ V + +G F AA LE A A L SW + + L A A+ G I E+ Sbjct 580 ILVGTVELCRGRFTDAAHRLEQAIAALNVGDTADAISWSFPAYIALGQAYAELGRIHEAD 639 Query 57 KTLQRAEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALC 116 + A+AR+G A+F P+L +++AW AA + + A+ +R AA +A ++GQ + Sbjct 640 GIITAAQARNGRHVAVFGPQLTMSQAWLAAARGETSRAVDLSRSAAESACKSGQFGIEAV 699 Query 117 AWHNAVRLGDIRAVDPVTRLAAEIDCTVGNI 147 A H A R GD + LA D + +I Sbjct 700 ALHLATRFGDTTTATRLAELAGICDGELVDI 730 >gi|41407972|ref|NP_960808.1| hypothetical protein MAP1874c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396326|gb|AAS04191.1| hypothetical protein MAP_1874c [Mycobacterium avium subsp. paratuberculosis K-10] Length=854 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 58/144 (41%), Positives = 74/144 (52%), Gaps = 5/144 (3%) Query 36 PLSLMLLATAIAQQ-----GHIAESAKTLQRAEARHGTKSALFAPELGLARAWTRAAAQD 90 PL L+ A+ Q G A +A L+R E +G A+F PEL LARAW RAAA D Sbjct 597 PLPWQLVVGALQAQAEGARGDSAAAAVALRRVEEAYGPHVAVFLPELELARAWERAAAGD 656 Query 91 MTGAIAAAREAARTAERAGQAAVALCAWHNAVRLGDIRAVDPVTRLAAEIDCTVGNILVK 150 GA A +AA+TA +AG V + A H A+R GD V LA+ ++ + Sbjct 657 TAGAQTQAMQAAQTARKAGMHLVEMRARHAALRFGDRAQAARVDELASILNSPSAQAVAD 716 Query 151 HARGLADGDAAELTAVAEELAGIG 174 HARGLA D L A A A +G Sbjct 717 HARGLAQHDGDLLDAAAHRFADLG 740 >gi|342859841|ref|ZP_08716494.1| TPR repeat-containing protein [Mycobacterium colombiense CECT 3035] gi|342132973|gb|EGT86193.1| TPR repeat-containing protein [Mycobacterium colombiense CECT 3035] Length=895 Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 63/175 (36%), Positives = 90/175 (52%), Gaps = 3/175 (1%) Query 2 LLAYVLITKGEFGAAASMLEPAAATLERTGYS--WGPLSLMLLATAIAQQGHIAESAKTL 59 +L +V +T+GE AA ++ + A L + G++ W + A A +G A +A L Sbjct 584 MLGFVRLTRGELTAACAVFNSSIAVLAK-GFASPWLVVVGAWQAQAEGARGDTAAAAAAL 642 Query 60 QRAEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALCAWH 119 +RA+ +G A+F PEL LARAW RAAA D+ A A +AA A AG + + A H Sbjct 643 RRADKAYGPHVAVFVPELELARAWERAAAGDVKAAQTHATQAAEIARAAGTHVMEMRARH 702 Query 120 NAVRLGDIRAVDPVTRLAAEIDCTVGNILVKHARGLADGDAAELTAVAEELAGIG 174 AVR GD + +LA +D + + HARGLA D L A A +G Sbjct 703 AAVRFGDRSQAARLEKLAHLLDTALAGAVADHARGLAQRDGDLLDVAAHLFADLG 757 >gi|336462025|gb|EGO40874.1| hypothetical protein MAPs_25240 [Mycobacterium avium subsp. paratuberculosis S397] Length=890 Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 61/174 (36%), Positives = 83/174 (48%), Gaps = 1/174 (0%) Query 2 LLAYVLITKGEFGAAASMLEPAAATLERTGYS-WGPLSLMLLATAIAQQGHIAESAKTLQ 60 +L V + +GEF AA + + + + S W + A A +G +A L Sbjct 590 MLGLVRLARGEFPAACAAFTRSISLFAKGFPSPWLVVVGAFQAQAEGARGDSTAAAAALW 649 Query 61 RAEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALCAWHN 120 RA+ +G +A+F PEL LARAW RAAA D A A +AA A AG A + H Sbjct 650 RADRAYGPHAAVFLPELELARAWERAAAGDTQAATTHATQAAEIARAAGMHAAEMRTRHA 709 Query 121 AVRLGDIRAVDPVTRLAAEIDCTVGNILVKHARGLADGDAAELTAVAEELAGIG 174 AVR GD + RLA +D + HARGL D L A A++ A +G Sbjct 710 AVRFGDRSQTARLERLARILDTPLAEAAADHARGLTQRDGDLLDAAAQKFADLG 763 >gi|118466286|ref|YP_881565.1| TPR repeat-containing protein [Mycobacterium avium 104] gi|118167573|gb|ABK68470.1| tetratricopeptide repeat family protein [Mycobacterium avium 104] Length=891 Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 61/174 (36%), Positives = 83/174 (48%), Gaps = 1/174 (0%) Query 2 LLAYVLITKGEFGAAASMLEPAAATLERTGYS-WGPLSLMLLATAIAQQGHIAESAKTLQ 60 +L V + +GEF AA + + + + S W + A A +G +A L Sbjct 580 MLGVVRLARGEFPAACAAFTRSISLFAKGFPSPWLVVVGAFQAQAEGARGDSTAAAAALW 639 Query 61 RAEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALCAWHN 120 RA+ +G +A+F PEL LARAW RAAA D A A +AA A AG A + H Sbjct 640 RADRAYGPHAAVFLPELELARAWERAAAGDTQAATTHATQAAEIARAAGMHAAEMRTRHA 699 Query 121 AVRLGDIRAVDPVTRLAAEIDCTVGNILVKHARGLADGDAAELTAVAEELAGIG 174 AVR GD + RLA +D + HARGL D L A A++ A +G Sbjct 700 AVRFGDRSQTARLERLARILDTPLAEAAADHARGLTQRDGDLLDAAAQQFADLG 753 >gi|254775034|ref|ZP_05216550.1| TPR repeat-containing protein [Mycobacterium avium subsp. avium ATCC 25291] Length=891 Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 61/174 (36%), Positives = 83/174 (48%), Gaps = 1/174 (0%) Query 2 LLAYVLITKGEFGAAASMLEPAAATLERTGYS-WGPLSLMLLATAIAQQGHIAESAKTLQ 60 +L V + +GEF AA + + + + S W + A A +G +A L Sbjct 580 MLGLVRLARGEFPAACAAFTRSISLFAKGFPSPWLVVVGAFQAQAEGARGDSTAAAAALW 639 Query 61 RAEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALCAWHN 120 RA+ +G +A+F PEL LARAW RAAA D A A +AA A AG A + H Sbjct 640 RADRAYGPHAAVFLPELELARAWERAAAGDTQAATTHATQAAEIARAAGMHAAEMRTRHA 699 Query 121 AVRLGDIRAVDPVTRLAAEIDCTVGNILVKHARGLADGDAAELTAVAEELAGIG 174 AVR GD + RLA +D + HARGL D L A A++ A +G Sbjct 700 AVRFGDRSQTARLERLARILDTPLAEAAADHARGLTQRDGDLLDAAAQKFADLG 753 >gi|41407973|ref|NP_960809.1| hypothetical protein MAP1875c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396327|gb|AAS04192.1| hypothetical protein MAP_1875c [Mycobacterium avium subsp. paratuberculosis K-10] Length=901 Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 61/174 (36%), Positives = 83/174 (48%), Gaps = 1/174 (0%) Query 2 LLAYVLITKGEFGAAASMLEPAAATLERTGYS-WGPLSLMLLATAIAQQGHIAESAKTLQ 60 +L V + +GEF AA + + + + S W + A A +G +A L Sbjct 590 MLGLVRLARGEFPAACAAFTRSISLFAKGFPSPWLVVVGAFQAQAEGARGDSTAAAAALW 649 Query 61 RAEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALCAWHN 120 RA+ +G +A+F PEL LARAW RAAA D A A +AA A AG A + H Sbjct 650 RADRAYGPHAAVFLPELELARAWERAAAGDTQAATTHATQAAEIARAAGMHAAEMRTRHA 709 Query 121 AVRLGDIRAVDPVTRLAAEIDCTVGNILVKHARGLADGDAAELTAVAEELAGIG 174 AVR GD + RLA +D + HARGL D L A A++ A +G Sbjct 710 AVRFGDRSQTARLERLARILDTPLAEAAADHARGLTQRDGDLLDAAAQKFADLG 763 >gi|254823399|ref|ZP_05228400.1| hypothetical protein MintA_25951 [Mycobacterium intracellulare ATCC 13950] Length=871 Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 61/174 (36%), Positives = 85/174 (49%), Gaps = 1/174 (0%) Query 2 LLAYVLITKGEFGAAASMLEPAAATLERTGYS-WGPLSLMLLATAIAQQGHIAESAKTLQ 60 +L V +++GE +A + L+ + + L + S W + LLA A +G A + L+ Sbjct 574 MLGLVQVSRGELSSACATLDRSISQLSQGFPSPWLLVVAALLAQAEGARGDGAAAVAALR 633 Query 61 RAEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALCAWHN 120 RAE +G +F PEL LARAW RAAA D T A + A +AA+ A A + A H Sbjct 634 RAEETYGPHVGVFLPELELARAWERAAAGDTTAAQSHAMQAAQIARAAAMHVAEMRARHA 693 Query 121 AVRLGDIRAVDPVTRLAAEIDCTVGNILVKHARGLADGDAAELTAVAEELAGIG 174 AVR GD V LA + + ARGLA D L A + A +G Sbjct 694 AVRFGDRSQATRVDELARMLGSPSAQAVADQARGLAQHDGDLLDVAAHKFADLG 747 >gi|254823398|ref|ZP_05228399.1| TPR repeat-containing protein [Mycobacterium intracellulare ATCC 13950] Length=885 Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 63/167 (38%), Positives = 85/167 (51%), Gaps = 1/167 (0%) Query 2 LLAYVLITKGEFGAAASMLEPAAATLERTGYS-WGPLSLMLLATAIAQQGHIAESAKTLQ 60 +L V + +GE +A ++ A A + S W + L A A +G A +A L+ Sbjct 574 MLGLVQVARGELASACAVFTNATAVFAQGFPSPWLIVVAALHAQAEGARGDSAAAAAALR 633 Query 61 RAEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALCAWHN 120 RAE +G A+F PEL LARAW RAAA D + A A A AA+ A A AV + A H Sbjct 634 RAEKNYGPHVAVFLPELELARAWERAAAGDTSAAQAHATRAAQIARAAKMHAVEMRARHT 693 Query 121 AVRLGDIRAVDPVTRLAAEIDCTVGNILVKHARGLADGDAAELTAVA 167 AVR GD P+ +LA ++ + + HA LA D A L A A Sbjct 694 AVRFGDPSQATPLEKLARILNTPLAAAVADHACALAKHDGALLDAAA 740 >gi|126433529|ref|YP_001069220.1| response regulator receiver protein [Mycobacterium sp. JLS] gi|126233329|gb|ABN96729.1| response regulator receiver protein [Mycobacterium sp. JLS] Length=880 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 64/183 (35%), Positives = 84/183 (46%), Gaps = 1/183 (0%) Query 6 VLITKGEFGAAASMLEPAAATLE-RTGYSWGPLSLMLLATAIAQQGHIAESAKTLQRAEA 64 V + +G F AA S LE A A L W ++ +LL A A G + + L Sbjct 580 VEVYRGRFPAAVSSLEQALAALNAENSMPWRLVARLLLVRAYAALGDTKNAERVLGETTE 639 Query 65 RHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALCAWHNAVRL 124 G AL P+ +A+AW AA AI AR AA A R+GQ AV A H+A R Sbjct 640 HLGPHMALHHPQALIAKAWMVAARGGERTAIDLARAAADLAHRSGQLAVEAEALHHAARF 699 Query 125 GDIRAVDPVTRLAAEIDCTVGNILVKHARGLADGDAAELTAVAEELAGIGMAAAAADATK 184 GD + LA +D V N+ +HA LA DA L AV+ + G +A+D Sbjct 700 GDRAVASRLAVLARVVDGGVVNLHSRHAAALASADADRLDAVSRDYEDAGYLLSASDTAA 759 Query 185 AAA 187 AA Sbjct 760 QAA 762 >gi|325672603|ref|ZP_08152299.1| transcriptional regulator [Rhodococcus equi ATCC 33707] gi|325556480|gb|EGD26146.1| transcriptional regulator [Rhodococcus equi ATCC 33707] Length=867 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/137 (37%), Positives = 67/137 (49%), Gaps = 1/137 (0%) Query 6 VLITKGEFGAAASMLEPAAATLER-TGYSWGPLSLMLLATAIAQQGHIAESAKTLQRAEA 64 V +T G AA L A A L+R T W L+ + L A QG A++A L AE Sbjct 586 VELTGGRLDDAAEHLTEALAVLDRETRSEWMLLAAVSLCQVRAAQGKGADAAAALAVAER 645 Query 65 RHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALCAWHNAVRL 124 G + A F P + +ARAW +A +++ A+ AAR A A R+GQ AV A A Sbjct 646 NSGPELAFFDPLIDVARAWVAGSAGEVSAAVHAARRGADLAARSGQFAVEAIALDVATTF 705 Query 125 GDIRAVDPVTRLAAEID 141 GD + LAA +D Sbjct 706 GDYTTASRLGELAAFVD 722 >gi|312139507|ref|YP_004006843.1| luxr family transcriptional regulator [Rhodococcus equi 103S] gi|311888846|emb|CBH48158.1| putative LuxR family transcriptional regulator [Rhodococcus equi 103S] Length=867 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/137 (37%), Positives = 67/137 (49%), Gaps = 1/137 (0%) Query 6 VLITKGEFGAAASMLEPAAATLER-TGYSWGPLSLMLLATAIAQQGHIAESAKTLQRAEA 64 V +T G AA L A A L+R T W L+ + L A QG A++A L AE Sbjct 586 VELTGGRLDDAAEHLTEALAVLDRETRSEWMLLAAVSLCQVRAAQGKGADAAAALAVAER 645 Query 65 RHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALCAWHNAVRL 124 G + A F P + +ARAW +A +++ A+ AAR A A R+GQ AV A A Sbjct 646 NSGPELAFFDPLIDVARAWVAGSAGEVSAAVHAARRGADLAARSGQFAVEAIALDVATTF 705 Query 125 GDIRAVDPVTRLAAEID 141 GD + LAA +D Sbjct 706 GDYTTASRLGELAAFVD 722 >gi|256392793|ref|YP_003114357.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256359019|gb|ACU72516.1| transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length=884 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/108 (35%), Positives = 51/108 (48%), Gaps = 0/108 (0%) Query 68 TKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALCAWHNAVRLGDI 127 T L P + L+ AW AA + A AREAA A R G AV A H AVR GD Sbjct 661 TTQGLIQPVVHLSSAWLAAAEGAVGKARTTAREAADCAARLGHLAVETVALHTAVRFGDR 720 Query 128 RAVDPVTRLAAEIDCTVGNILVKHARGLADGDAAELTAVAEELAGIGM 175 + L + +D + +HA+ ++ DA++L V LA G+ Sbjct 721 TCGPRLQALTSLVDGPRVQLAAQHAQAWSERDASKLLTVCTALADAGL 768 >gi|254822024|ref|ZP_05227025.1| hypothetical protein MintA_18972 [Mycobacterium intracellulare ATCC 13950] Length=58 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 32/55 (59%), Positives = 35/55 (64%), Gaps = 0/55 (0%) Query 136 LAAEIDCTVGNILVKHARGLADGDAAELTAVAEELAGIGMAAAAADATKAAARLG 190 L EIDC VG I + HAR L GDA L AV++EL IGM AAAADA A R G Sbjct 3 LCDEIDCVVGRIALAHARALTAGDAEALRAVSDELTSIGMHAAAADAAAQARRCG 57 >gi|118471754|ref|YP_888483.1| transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118173041|gb|ABK73937.1| putative transcriptional regulator [Mycobacterium smegmatis str. MC2 155] Length=873 Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 52/120 (44%), Gaps = 1/120 (0%) Query 8 ITKGEFGAAASMLEPAAATLE-RTGYSWGPLSLMLLATAIAQQGHIAESAKTLQRAEARH 66 + G F A S +E A A L W +LLA A A G + E+ + L A Sbjct 584 MHSGRFRDAISAIEQALAALNAEISLPWQLPGRLLLARAYAAVGEVIEAERVLDDAMEHS 643 Query 67 GTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALCAWHNAVRLGD 126 G AL P+ LA+A AA AI AR AA A + Q AV A H+ R GD Sbjct 644 GAFMALHEPQRTLAKACVAAAKGAHRSAIDIARSAADLARSSEQHAVEAEALHHCARFGD 703 >gi|169630986|ref|YP_001704635.1| LuxR transcriptional regulator [Mycobacterium abscessus ATCC 19977] gi|169242953|emb|CAM63981.1| Putative regulatory protein, LuxR [Mycobacterium abscessus] Length=901 Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust. Identities = 38/121 (32%), Positives = 55/121 (46%), Gaps = 0/121 (0%) Query 50 GHIAESAKTLQRAEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAG 109 G + + L A G A+ P++ LA+AW AA GA+ AAR AA A AG Sbjct 657 GRAVDGERVLDEAREHSGPHVAIHMPQMMLAKAWLVAARGSDRGAVDAARRAADAAHSAG 716 Query 110 QAAVALCAWHNAVRLGDIRAVDPVTRLAAEIDCTVGNILVKHARGLADGDAAELTAVAEE 169 Q A+ A H+A R GD + L + + + +HA +A D L AV+ + Sbjct 717 QYALEAEALHHAARFGDRTVGRRIESLCTRVHGPLTGLYARHALAVAHSDITGLEAVSAD 776 Query 170 L 170 Sbjct 777 F 777 >gi|120405019|ref|YP_954848.1| response regulator receiver protein [Mycobacterium vanbaalenii PYR-1] gi|119957837|gb|ABM14842.1| response regulator receiver protein [Mycobacterium vanbaalenii PYR-1] Length=864 Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust. Identities = 42/127 (34%), Positives = 61/127 (49%), Gaps = 1/127 (0%) Query 1 VLLAYVLITKGEFGAAASMLEPAAATLE-RTGYSWGPLSLMLLATAIAQQGHIAESAKTL 59 ++ V +GEF A + +E A A L T W +LLA A A G E+ + L Sbjct 576 IMAGVVATARGEFPDAVTCIEQALAALNAETSLPWQLPGRLLLARAYAALGRTDEAERVL 635 Query 60 QRAEARHGTKSALFAPELGLARAWTRAAAQDMTGAIAAAREAARTAERAGQAAVALCAWH 119 A G +A+ P+ ++R+W AA A+ AR AA A ++GQ A+ A H Sbjct 636 NDAAEHSGPSAAIHEPQRLISRSWYAAAKGMERRALELARAAAEIARQSGQYALEAEALH 695 Query 120 NAVRLGD 126 +A R GD Sbjct 696 HATRFGD 702 Lambda K H 0.318 0.127 0.358 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 198992683544 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40