BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1221
Length=257
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608361|ref|NP_215737.1| RNA polymerase sigma factor SigE [M... 533 1e-149
gi|308231780|ref|ZP_07663928.1| alternative RNA polymerase sigma... 436 2e-120
gi|118463820|ref|YP_880609.1| RNA polymerase sigma-70 factor [My... 414 5e-114
gi|41408655|ref|NP_961491.1| RNA polymerase sigma factor SigE [M... 414 9e-114
gi|254774242|ref|ZP_05215758.1| RNA polymerase sigma factor SigE... 410 7e-113
gi|296170125|ref|ZP_06851724.1| RNA polymerase sigma-70 factor [... 407 7e-112
gi|183984188|ref|YP_001852479.1| alternative RNA polymerase sigm... 407 1e-111
gi|342862104|ref|ZP_08718747.1| RNA polymerase sigma factor SigE... 406 2e-111
gi|118619621|ref|YP_907953.1| RNA polymerase sigma factor SigE [... 404 5e-111
gi|240168999|ref|ZP_04747658.1| RNA polymerase sigma factor SigE... 401 5e-110
gi|15827526|ref|NP_301789.1| RNA polymerase sigma factor SigE [M... 398 4e-109
gi|126436583|ref|YP_001072274.1| RNA polymerase sigma factor Sig... 382 4e-104
gi|254822084|ref|ZP_05227085.1| RNA polymerase sigma factor SigE... 380 2e-103
gi|315443256|ref|YP_004076135.1| RNA polymerase, sigma 29 subuni... 379 3e-103
gi|108800958|ref|YP_641155.1| RNA polymerase sigma factor SigE [... 379 3e-103
gi|118468250|ref|YP_889322.1| RNA polymerase sigma factor SigE [... 377 9e-103
gi|120405448|ref|YP_955277.1| RNA polymerase sigma factor SigE [... 375 2e-102
gi|145222788|ref|YP_001133466.1| RNA polymerase sigma factor Sig... 372 2e-101
gi|2062637|gb|AAC45221.1| extracytoplasmic function alternative ... 368 5e-100
gi|333989835|ref|YP_004522449.1| RNA polymerase sigma factor Sig... 343 1e-92
gi|169628453|ref|YP_001702102.1| alternative RNA polymerase sigm... 333 2e-89
gi|312138875|ref|YP_004006211.1| sigma-70 factor [Rhodococcus eq... 332 5e-89
gi|54026703|ref|YP_120945.1| RNA polymerase sigma factor SigE [N... 326 2e-87
gi|226365446|ref|YP_002783229.1| RNA polymerase ECF-type sigma f... 323 1e-86
gi|111022940|ref|YP_705912.1| sigma factor, sigma 70 type, group... 323 2e-86
gi|229493846|ref|ZP_04387619.1| sigma factor, sigma 70 type, gro... 318 7e-85
gi|226307645|ref|YP_002767605.1| RNA polymerase ECF-type sigma f... 317 8e-85
gi|343928010|ref|ZP_08767475.1| RNA polymerase ECF-type sigma fa... 307 8e-82
gi|699142|gb|AAA62908.1| rpoE [Mycobacterium leprae] 306 1e-81
gi|326382036|ref|ZP_08203729.1| RNA polymerase sigma factor SigE... 305 3e-81
gi|262201798|ref|YP_003273006.1| sigma-70 family RNA polymerase ... 303 1e-80
gi|333921004|ref|YP_004494585.1| putative sigma factor [Amycolic... 298 4e-79
gi|296138795|ref|YP_003646038.1| ECF subfamily RNA polymerase si... 296 2e-78
gi|289761366|ref|ZP_06520744.1| alternative RNA polymerase sigma... 290 2e-76
gi|317508221|ref|ZP_07965901.1| sigma-70 family RNA polymerase s... 279 3e-73
gi|257054709|ref|YP_003132541.1| RNA polymerase sigma factor, si... 278 4e-73
gi|300782995|ref|YP_003763286.1| RNA polymerase sigma-70 factor,... 277 1e-72
gi|256374942|ref|YP_003098602.1| ECF subfamily RNA polymerase si... 277 1e-72
gi|302524349|ref|ZP_07276691.1| RNA polymerase sigma-W factor [S... 275 6e-72
gi|259506865|ref|ZP_05749765.1| RNA polymerase sigma-70 factor, ... 274 1e-71
gi|25027733|ref|NP_737787.1| RNA polymerase sigma factor SigE [C... 273 1e-71
gi|62390010|ref|YP_225412.1| RNA polymerase sigma factor SigE [C... 270 1e-70
gi|19552346|ref|NP_600348.1| RNA polymerase sigma factor SigE [C... 270 1e-70
gi|225022882|ref|ZP_03712074.1| hypothetical protein CORMATOL_02... 269 4e-70
gi|305681839|ref|ZP_07404643.1| RNA polymerase sigma factor SigE... 268 5e-70
gi|325002583|ref|ZP_08123695.1| RNA polymerase, sigma-24 subunit... 268 7e-70
gi|296394494|ref|YP_003659378.1| ECF subfamily RNA polymerase si... 267 1e-69
gi|227548420|ref|ZP_03978469.1| RNA polymerase sigma factor SigE... 266 2e-69
gi|258652367|ref|YP_003201523.1| ECF subfamily RNA polymerase si... 266 3e-69
gi|38233589|ref|NP_939356.1| RNA polymerase sigma factor SigE [C... 265 4e-69
>gi|15608361|ref|NP_215737.1| RNA polymerase sigma factor SigE [Mycobacterium tuberculosis
H37Rv]
gi|15840665|ref|NP_335702.1| RNA polymerase sigma factor SigE [Mycobacterium tuberculosis
CDC1551]
gi|31792414|ref|NP_854907.1| RNA polymerase sigma factor SigE [Mycobacterium bovis AF2122/97]
64 more sequence titles
Length=257
Score = 533 bits (1372), Expect = 1e-149, Method: Compositional matrix adjust.
Identities = 257/257 (100%), Positives = 257/257 (100%), Gaps = 0/257 (0%)
Query 1 MELLGGPRVGNTESQLCVADGDDLPTYCSANSEDLNITTITTLSPTSMSHPQQVRDDQWV 60
MELLGGPRVGNTESQLCVADGDDLPTYCSANSEDLNITTITTLSPTSMSHPQQVRDDQWV
Sbjct 1 MELLGGPRVGNTESQLCVADGDDLPTYCSANSEDLNITTITTLSPTSMSHPQQVRDDQWV 60
Query 61 EPSDQLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRV 120
EPSDQLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRV
Sbjct 61 EPSDQLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRV 120
Query 121 FRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDA 180
FRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDA
Sbjct 121 FRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDA 180
Query 181 RLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYL 240
RLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYL
Sbjct 181 RLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYL 240
Query 241 AAHPEHGECAVHVNPVR 257
AAHPEHGECAVHVNPVR
Sbjct 241 AAHPEHGECAVHVNPVR 257
>gi|308231780|ref|ZP_07663928.1| alternative RNA polymerase sigma factor sigE [Mycobacterium tuberculosis
SUMu001]
gi|308370024|ref|ZP_07666850.1| alternative RNA polymerase sigma factor sigE [Mycobacterium tuberculosis
SUMu002]
gi|308371906|ref|ZP_07426626.2| alternative RNA polymerase sigma factor sigE [Mycobacterium tuberculosis
SUMu004]
12 more sequence titles
Length=210
Score = 436 bits (1121), Expect = 2e-120, Method: Compositional matrix adjust.
Identities = 210/210 (100%), Positives = 210/210 (100%), Gaps = 0/210 (0%)
Query 48 MSHPQQVRDDQWVEPSDQLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQH 107
MSHPQQVRDDQWVEPSDQLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQH
Sbjct 1 MSHPQQVRDDQWVEPSDQLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQH 60
Query 108 DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVP 167
DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVP
Sbjct 61 DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVP 120
Query 168 ADEPNPEQIYHDARLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS 227
ADEPNPEQIYHDARLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS
Sbjct 121 ADEPNPEQIYHDARLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS 180
Query 228 RIHRGRQALRDYLAAHPEHGECAVHVNPVR 257
RIHRGRQALRDYLAAHPEHGECAVHVNPVR
Sbjct 181 RIHRGRQALRDYLAAHPEHGECAVHVNPVR 210
>gi|118463820|ref|YP_880609.1| RNA polymerase sigma-70 factor [Mycobacterium avium 104]
gi|118165107|gb|ABK66004.1| RNA polymerase sigma-70 factor [Mycobacterium avium 104]
Length=424
Score = 414 bits (1065), Expect = 5e-114, Method: Compositional matrix adjust.
Identities = 204/242 (85%), Positives = 214/242 (89%), Gaps = 2/242 (0%)
Query 5 GGPRVGNTESQLCVADGDDLPTYCSANSEDLNITTITTLSPTSMSHPQQVRDDQWVEPSD 64
G GNTE QL VA D++P NSE+L ITT+ LSP+SMSH D W EPSD
Sbjct 4 GARETGNTEWQLPVAANDEMPLIGMPNSEELIITTL--LSPSSMSHAHDPSADGWAEPSD 61
Query 65 QLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSV 124
LQGTAVFDATGDK MPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSV
Sbjct 62 GLQGTAVFDATGDKTAMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSV 121
Query 125 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGP 184
QNYQPGTFEGWLHRITTNLFLDMVRRR+RIRMEALPEDY+RVPADEPNPE+IYHD+RLGP
Sbjct 122 QNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYERVPADEPNPEEIYHDSRLGP 181
Query 185 DLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP 244
DLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP
Sbjct 182 DLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP 241
Query 245 EH 246
+H
Sbjct 242 DH 243
>gi|41408655|ref|NP_961491.1| RNA polymerase sigma factor SigE [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|2062634|gb|AAC45219.1| extracytoplasmic function alternative sigma factor [Mycobacterium
avium]
gi|41397013|gb|AAS04874.1| SigE [Mycobacterium avium subsp. paratuberculosis K-10]
gi|336458556|gb|EGO37523.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium avium
subsp. paratuberculosis S397]
Length=251
Score = 414 bits (1063), Expect = 9e-114, Method: Compositional matrix adjust.
Identities = 204/242 (85%), Positives = 214/242 (89%), Gaps = 2/242 (0%)
Query 5 GGPRVGNTESQLCVADGDDLPTYCSANSEDLNITTITTLSPTSMSHPQQVRDDQWVEPSD 64
G GNTE QL VA D++P NSE+L ITT+ LSP+SMSH D W EPSD
Sbjct 4 GARETGNTEWQLPVAANDEMPLIGMPNSEELIITTL--LSPSSMSHAHDPSADGWAEPSD 61
Query 65 QLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSV 124
LQGTAVFDATGDK MPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSV
Sbjct 62 GLQGTAVFDATGDKTAMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSV 121
Query 125 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGP 184
QNYQPGTFEGWLHRITTNLFLDMVRRR+RIRMEALPEDY+RVPADEPNPE+IYHD+RLGP
Sbjct 122 QNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYERVPADEPNPEEIYHDSRLGP 181
Query 185 DLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP 244
DLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP
Sbjct 182 DLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP 241
Query 245 EH 246
+H
Sbjct 242 DH 243
>gi|254774242|ref|ZP_05215758.1| RNA polymerase sigma factor SigE [Mycobacterium avium subsp.
avium ATCC 25291]
Length=251
Score = 410 bits (1055), Expect = 7e-113, Method: Compositional matrix adjust.
Identities = 203/242 (84%), Positives = 213/242 (89%), Gaps = 2/242 (0%)
Query 5 GGPRVGNTESQLCVADGDDLPTYCSANSEDLNITTITTLSPTSMSHPQQVRDDQWVEPSD 64
G GNTE QL VA D++P NSE+L ITT+ LSP+SMSH D W E SD
Sbjct 4 GARETGNTEWQLPVAANDEMPLIGMPNSEELIITTL--LSPSSMSHAHDPSADGWAEQSD 61
Query 65 QLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSV 124
LQGTAVFDATGDK MPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSV
Sbjct 62 GLQGTAVFDATGDKTAMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSV 121
Query 125 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGP 184
QNYQPGTFEGWLHRITTNLFLDMVRRR+RIRMEALPEDY+RVPADEPNPE+IYHD+RLGP
Sbjct 122 QNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYERVPADEPNPEEIYHDSRLGP 181
Query 185 DLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP 244
DLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP
Sbjct 182 DLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP 241
Query 245 EH 246
+H
Sbjct 242 DH 243
>gi|296170125|ref|ZP_06851724.1| RNA polymerase sigma-70 factor [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295895227|gb|EFG74940.1| RNA polymerase sigma-70 factor [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=253
Score = 407 bits (1046), Expect = 7e-112, Method: Compositional matrix adjust.
Identities = 206/238 (87%), Positives = 218/238 (92%), Gaps = 4/238 (1%)
Query 10 GNTESQLCVADGDDLPTYCSANSEDLNITTITTLSPTSMSHPQQVRDDQWVEPSDQLQGT 69
GNT+ + VA GDDL + +SE++ ITT+ LSPTSMSH Q D+WVEP+D LQGT
Sbjct 9 GNTDWRPRVAAGDDL-SLLGRDSEEI-ITTL--LSPTSMSHAQDCPADEWVEPADGLQGT 64
Query 70 AVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQP 129
AVFDATGDK+TMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQP
Sbjct 65 AVFDATGDKSTMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQP 124
Query 130 GTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGPDLQAA 189
GTFEGWLHRITTNLFLDMVRRRARIRMEALP+DY+RVPADEPNPEQIYHDARLGPDLQAA
Sbjct 125 GTFEGWLHRITTNLFLDMVRRRARIRMEALPDDYERVPADEPNPEQIYHDARLGPDLQAA 184
Query 190 LASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHPEHG 247
L SLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHPE G
Sbjct 185 LDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHPERG 242
>gi|183984188|ref|YP_001852479.1| alternative RNA polymerase sigma factor SigE [Mycobacterium marinum
M]
gi|183177514|gb|ACC42624.1| alternative RNA polymerase sigma factor SigE [Mycobacterium marinum
M]
Length=255
Score = 407 bits (1045), Expect = 1e-111, Method: Compositional matrix adjust.
Identities = 211/246 (86%), Positives = 219/246 (90%), Gaps = 2/246 (0%)
Query 5 GGPRVGNTESQLCVADGDDLPTYCSANSEDLNITTITTLSPTSMSHPQQVRDDQWVEPSD 64
GG +GNTE QL VA GD+LP S E TITTLS T+MSHPQ VRDD+W E SD
Sbjct 4 GGRGLGNTEWQLRVAAGDELP--MSDGREKPEEHTITTLSTTTMSHPQLVRDDEWAETSD 61
Query 65 QLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSV 124
L GTAVFDATGDKA MPSWDELVRQHADRVYRLAYRLSGNQ DAEDLTQETFIRVFRSV
Sbjct 62 GLLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIRVFRSV 121
Query 125 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGP 184
QNYQPGTFEGWLHRITTNLFLDMVRRR+RIRMEALPEDYDRVPAD+PNPEQIYHD+RLGP
Sbjct 122 QNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQIYHDSRLGP 181
Query 185 DLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP 244
DLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP
Sbjct 182 DLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP 241
Query 245 EHGECA 250
EH E +
Sbjct 242 EHSELS 247
>gi|342862104|ref|ZP_08718747.1| RNA polymerase sigma factor SigE [Mycobacterium colombiense CECT
3035]
gi|342130408|gb|EGT83723.1| RNA polymerase sigma factor SigE [Mycobacterium colombiense CECT
3035]
Length=229
Score = 406 bits (1043), Expect = 2e-111, Method: Compositional matrix adjust.
Identities = 197/223 (89%), Positives = 209/223 (94%), Gaps = 2/223 (0%)
Query 24 LPTYCSANSEDLNITTITTLSPTSMSHPQQVRDDQWVEPSDQLQGTAVFDATGDKATMPS 83
+P + +SED ITT+ LSP+SMSH Q++ D+WVEPSD LQGTAVFDATGDKA MPS
Sbjct 1 MPLVGTPDSEDSIITTL--LSPSSMSHAQELPADEWVEPSDALQGTAVFDATGDKAAMPS 58
Query 84 WDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNL 143
WDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNL
Sbjct 59 WDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNL 118
Query 144 FLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGPDLQAALASLPPEFRAAVVL 203
FLDMVRRR+RIRMEALPEDY+RVPADEPNPEQIYHD+RLGPDLQAAL SLPPEFRAAVVL
Sbjct 119 FLDMVRRRSRIRMEALPEDYERVPADEPNPEQIYHDSRLGPDLQAALDSLPPEFRAAVVL 178
Query 204 CDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHPEH 246
CDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP+H
Sbjct 179 CDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHPDH 221
>gi|118619621|ref|YP_907953.1| RNA polymerase sigma factor SigE [Mycobacterium ulcerans Agy99]
gi|118571731|gb|ABL06482.1| alternative RNA polymerase sigma factor SigE [Mycobacterium ulcerans
Agy99]
Length=255
Score = 404 bits (1039), Expect = 5e-111, Method: Compositional matrix adjust.
Identities = 210/246 (86%), Positives = 218/246 (89%), Gaps = 2/246 (0%)
Query 5 GGPRVGNTESQLCVADGDDLPTYCSANSEDLNITTITTLSPTSMSHPQQVRDDQWVEPSD 64
GG +GNT QL VA GD+LP S E TITTLS T+MSHPQ VRDD+W E SD
Sbjct 4 GGRGLGNTAWQLRVAAGDELP--MSDGREKPEEHTITTLSTTTMSHPQLVRDDEWAETSD 61
Query 65 QLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSV 124
L GTAVFDATGDKA MPSWDELVRQHADRVYRLAYRLSGNQ DAEDLTQETFIRVFRSV
Sbjct 62 GLLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIRVFRSV 121
Query 125 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGP 184
QNYQPGTFEGWLHRITTNLFLDMVRRR+RIRMEALPEDYDRVPAD+PNPEQIYHD+RLGP
Sbjct 122 QNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQIYHDSRLGP 181
Query 185 DLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP 244
DLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP
Sbjct 182 DLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP 241
Query 245 EHGECA 250
EH E +
Sbjct 242 EHSELS 247
>gi|240168999|ref|ZP_04747658.1| RNA polymerase sigma factor SigE [Mycobacterium kansasii ATCC
12478]
Length=211
Score = 401 bits (1030), Expect = 5e-110, Method: Compositional matrix adjust.
Identities = 192/202 (96%), Positives = 197/202 (98%), Gaps = 0/202 (0%)
Query 48 MSHPQQVRDDQWVEPSDQLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQH 107
MSHP+Q+RDD+WVEPSD L GTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQH
Sbjct 1 MSHPRQIRDDEWVEPSDGLLGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQH 60
Query 108 DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVP 167
DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRR RIRMEALPEDYDRVP
Sbjct 61 DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRTRIRMEALPEDYDRVP 120
Query 168 ADEPNPEQIYHDARLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS 227
AD+PNPEQIYHDARLGPDLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS
Sbjct 121 ADDPNPEQIYHDARLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS 180
Query 228 RIHRGRQALRDYLAAHPEHGEC 249
RIHRGRQALRDYLAAHPEHG+
Sbjct 181 RIHRGRQALRDYLAAHPEHGQA 202
>gi|15827526|ref|NP_301789.1| RNA polymerase sigma factor SigE [Mycobacterium leprae TN]
gi|221230003|ref|YP_002503419.1| RNA polymerase sigma factor SigE [Mycobacterium leprae Br4923]
gi|13093076|emb|CAC31457.1| ECF subfamily sigma subunit [Mycobacterium leprae]
gi|219933110|emb|CAR71171.1| ECF subfamily sigma subunit [Mycobacterium leprae Br4923]
Length=263
Score = 398 bits (1023), Expect = 4e-109, Method: Compositional matrix adjust.
Identities = 207/253 (82%), Positives = 215/253 (85%), Gaps = 6/253 (2%)
Query 6 GPRVGNTESQLCVADGDDLPTY-CSANSEDLNITTITTLSPTSMSHPQQVRDDQWVEPSD 64
G GNT+ L V GD+ PT A+ EDL IT + LSPT MSHP RDD WVEP D
Sbjct 11 GRWTGNTQCPLRVVPGDESPTLDGRASPEDLIITNL--LSPTIMSHPPPSRDDDWVEPFD 68
Query 65 QLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSV 124
LQGTAVFDATGDKATMPSW+ELVRQHA RVY LAYRLSGNQHDAEDLTQETFIRVFRSV
Sbjct 69 ALQGTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVFRSV 128
Query 125 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGP 184
QNYQPGTFEGWLHRITTNLFLDMVRRRARIRM+ALP+DYDRVPADEPNPEQIYHD+RLGP
Sbjct 129 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRVPADEPNPEQIYHDSRLGP 188
Query 185 DLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDY-LAAH 243
DLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDY L AH
Sbjct 189 DLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLLTAH 248
Query 244 PEHGEC--AVHVN 254
P G A HV
Sbjct 249 PRDGATTDATHVK 261
>gi|126436583|ref|YP_001072274.1| RNA polymerase sigma factor SigE [Mycobacterium sp. JLS]
gi|126236383|gb|ABN99783.1| RNA polymerase, sigma 29 subunit, SigE [Mycobacterium sp. JLS]
Length=253
Score = 382 bits (980), Expect = 4e-104, Method: Compositional matrix adjust.
Identities = 192/238 (81%), Positives = 201/238 (85%), Gaps = 2/238 (0%)
Query 8 RVGNTESQLCVADGDDLPTYCSANSEDLNITTITTLS--PTSMSHPQQVRDDQWVEPSDQ 65
R GN S VA D + EDL TT P SM+H +Q D WVEP+D+
Sbjct 8 RFGNRNSADRVARNDAGQDSAGPDMEDLTTTTTAAAQAAPVSMAHLEQFSDSDWVEPTDE 67
Query 66 LQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQ 125
L GTAVFDATGDK TMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQ
Sbjct 68 LTGTAVFDATGDKTTMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQ 127
Query 126 NYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGPD 185
NYQPGTFEGWLHRITTNLFLDMVRRR RIRMEALPEDYDRVPAD+PNPEQI+HD+RLGPD
Sbjct 128 NYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRVPADDPNPEQIFHDSRLGPD 187
Query 186 LQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAH 243
LQAAL SLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALR+YLA H
Sbjct 188 LQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALREYLARH 245
>gi|254822084|ref|ZP_05227085.1| RNA polymerase sigma factor SigE [Mycobacterium intracellulare
ATCC 13950]
Length=207
Score = 380 bits (975), Expect = 2e-103, Method: Compositional matrix adjust.
Identities = 184/196 (94%), Positives = 188/196 (96%), Gaps = 0/196 (0%)
Query 48 MSHPQQVRDDQWVEPSDQLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQH 107
MSH Q+ D+WVEPSD QGTAVFDATGDKA MPSWDELVRQHADRVYRLAYRLSGNQH
Sbjct 1 MSHAQERPTDEWVEPSDVPQGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQH 60
Query 108 DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVP 167
DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDY+RVP
Sbjct 61 DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYERVP 120
Query 168 ADEPNPEQIYHDARLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS 227
ADEPNPEQIYHD+RLGPDLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS
Sbjct 121 ADEPNPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS 180
Query 228 RIHRGRQALRDYLAAH 243
RIHRGRQALRDYLAAH
Sbjct 181 RIHRGRQALRDYLAAH 196
>gi|315443256|ref|YP_004076135.1| RNA polymerase, sigma 29 subunit, SigE [Mycobacterium sp. Spyr1]
gi|315261559|gb|ADT98300.1| RNA polymerase, sigma 29 subunit, SigE [Mycobacterium sp. Spyr1]
Length=273
Score = 379 bits (973), Expect = 3e-103, Method: Compositional matrix adjust.
Identities = 190/243 (79%), Positives = 205/243 (85%), Gaps = 6/243 (2%)
Query 11 NTESQLCVADGDDLPTYCSANS-EDLNITT-----ITTLSPTSMSHPQQVRDDQWVEPSD 64
N + LCV++ D P + ED TT T +P SM+H +Q + +WVEP+D
Sbjct 22 NENAPLCVSEHDGSPQGGPRHHLEDPTTTTHGPTSSATAAPVSMAHLEQFTEAEWVEPTD 81
Query 65 QLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSV 124
+L GTAVFDATGDKA MPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSV
Sbjct 82 ELTGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSV 141
Query 125 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGP 184
QNYQPGTFEGWLHRITTNLFLDMVRRR RIRMEALPEDYDRVPADEPNPEQIYHD+RLG
Sbjct 142 QNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRVPADEPNPEQIYHDSRLGT 201
Query 185 DLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP 244
DLQAAL SL PEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALR++LA H
Sbjct 202 DLQAALDSLAPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALREHLARHS 261
Query 245 EHG 247
+ G
Sbjct 262 DVG 264
>gi|108800958|ref|YP_641155.1| RNA polymerase sigma factor SigE [Mycobacterium sp. MCS]
gi|119870098|ref|YP_940050.1| RNA polymerase sigma factor SigE [Mycobacterium sp. KMS]
gi|108771377|gb|ABG10099.1| RNA polymerase, sigma 29 subunit, SigE [Mycobacterium sp. MCS]
gi|119696187|gb|ABL93260.1| RNA polymerase, sigma 29 subunit, SigE [Mycobacterium sp. KMS]
Length=260
Score = 379 bits (972), Expect = 3e-103, Method: Compositional matrix adjust.
Identities = 181/199 (91%), Positives = 188/199 (95%), Gaps = 0/199 (0%)
Query 45 PTSMSHPQQVRDDQWVEPSDQLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSG 104
P SM+H +Q D WVEP+D+L GTAVFDATGDK TMPSWDELVRQHADRVYRLAYRLSG
Sbjct 54 PVSMAHLEQFSDSDWVEPTDELTGTAVFDATGDKTTMPSWDELVRQHADRVYRLAYRLSG 113
Query 105 NQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYD 164
NQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRR RIRMEALPEDYD
Sbjct 114 NQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYD 173
Query 165 RVPADEPNPEQIYHDARLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGT 224
RVPAD+PNPEQIYHD+RLGPDLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGT
Sbjct 174 RVPADDPNPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGT 233
Query 225 VRSRIHRGRQALRDYLAAH 243
VRSRIHRGRQALRD+LA H
Sbjct 234 VRSRIHRGRQALRDHLARH 252
>gi|118468250|ref|YP_889322.1| RNA polymerase sigma factor SigE [Mycobacterium smegmatis str.
MC2 155]
gi|118169537|gb|ABK70433.1| extracytoplasmic function alternative sigma factor [Mycobacterium
smegmatis str. MC2 155]
Length=257
Score = 377 bits (968), Expect = 9e-103, Method: Compositional matrix adjust.
Identities = 180/205 (88%), Positives = 188/205 (92%), Gaps = 0/205 (0%)
Query 39 TITTLSPTSMSHPQQVRDDQWVEPSDQLQGTAVFDATGDKATMPSWDELVRQHADRVYRL 98
T T +P SM+H +Q D WVEPSD+ GTAVFDATGD+A MPSWDELVRQHADRVYRL
Sbjct 45 TATHAAPVSMAHLEQFTDSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVRQHADRVYRL 104
Query 99 AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEA 158
AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRR RIRMEA
Sbjct 105 AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEA 164
Query 159 LPEDYDRVPADEPNPEQIYHDARLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATL 218
LPEDYDRVPA++PNPEQIYHD+RLG DLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATL
Sbjct 165 LPEDYDRVPAEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATL 224
Query 219 GVKLGTVRSRIHRGRQALRDYLAAH 243
GVKLGTVRSRIHRGRQ LRDYLA H
Sbjct 225 GVKLGTVRSRIHRGRQQLRDYLAKH 249
>gi|120405448|ref|YP_955277.1| RNA polymerase sigma factor SigE [Mycobacterium vanbaalenii PYR-1]
gi|119958266|gb|ABM15271.1| RNA polymerase, sigma 29 subunit, SigE [Mycobacterium vanbaalenii
PYR-1]
Length=269
Score = 375 bits (964), Expect = 2e-102, Method: Compositional matrix adjust.
Identities = 180/200 (90%), Positives = 187/200 (94%), Gaps = 0/200 (0%)
Query 48 MSHPQQVRDDQWVEPSDQLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQH 107
M+H +Q D WVEP+D+L GTAVFDATGDKA MPSWDELVRQHADRVYRLAYRLSGNQH
Sbjct 61 MAHLEQFTDAAWVEPADELTGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQH 120
Query 108 DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVP 167
DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRR RIRMEALPEDYDRVP
Sbjct 121 DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRVP 180
Query 168 ADEPNPEQIYHDARLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS 227
ADEPNPEQIYHD+RLGPDLQAAL SL PEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS
Sbjct 181 ADEPNPEQIYHDSRLGPDLQAALDSLAPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS 240
Query 228 RIHRGRQALRDYLAAHPEHG 247
RIHRGRQALR+YLA H + G
Sbjct 241 RIHRGRQALREYLARHSDAG 260
>gi|145222788|ref|YP_001133466.1| RNA polymerase sigma factor SigE [Mycobacterium gilvum PYR-GCK]
gi|145215274|gb|ABP44678.1| RNA polymerase, sigma 29 subunit, SigE [Mycobacterium gilvum
PYR-GCK]
Length=282
Score = 372 bits (956), Expect = 2e-101, Method: Compositional matrix adjust.
Identities = 178/200 (89%), Positives = 187/200 (94%), Gaps = 0/200 (0%)
Query 48 MSHPQQVRDDQWVEPSDQLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQH 107
M+H +Q + +WVEP+D+L GTAVFDATGDKA MPSWDELVRQHADRVYRLAYRLSGNQH
Sbjct 74 MAHREQFTEAEWVEPTDELTGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQH 133
Query 108 DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVP 167
DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRR RIRMEALPEDYDRVP
Sbjct 134 DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRVP 193
Query 168 ADEPNPEQIYHDARLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS 227
ADEPNPEQIYHD+RLG DLQAAL SL PEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS
Sbjct 194 ADEPNPEQIYHDSRLGADLQAALDSLAPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS 253
Query 228 RIHRGRQALRDYLAAHPEHG 247
RIHRGRQALRD+LA H + G
Sbjct 254 RIHRGRQALRDHLARHSDVG 273
>gi|2062637|gb|AAC45221.1| extracytoplasmic function alternative sigma factor [Mycobacterium
smegmatis]
Length=204
Score = 368 bits (944), Expect = 5e-100, Method: Compositional matrix adjust.
Identities = 176/196 (90%), Positives = 183/196 (94%), Gaps = 0/196 (0%)
Query 48 MSHPQQVRDDQWVEPSDQLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQH 107
M+H +Q D WVEPSD+ GTAVFDATGD+A MPSWDELVRQHADRVYRLAYRLSGNQH
Sbjct 1 MAHLEQFTDSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVRQHADRVYRLAYRLSGNQH 60
Query 108 DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVP 167
DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRR RIRMEALPEDYDRVP
Sbjct 61 DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRVP 120
Query 168 ADEPNPEQIYHDARLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS 227
A++PNPEQIYHD+RLG DLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS
Sbjct 121 AEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS 180
Query 228 RIHRGRQALRDYLAAH 243
RIHRGRQ LRDYLA H
Sbjct 181 RIHRGRQQLRDYLAKH 196
>gi|333989835|ref|YP_004522449.1| RNA polymerase sigma factor SigE [Mycobacterium sp. JDM601]
gi|333485803|gb|AEF35195.1| alternative RNA polymerase sigma factor SigE [Mycobacterium sp.
JDM601]
Length=238
Score = 343 bits (880), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 180/216 (84%), Positives = 193/216 (90%), Gaps = 6/216 (2%)
Query 30 ANSEDLNITTITTLSPTSMSHP----QQVRDDQWVEPSDQLQGTAVFDATGDKATMPSWD 85
+ +ED+ ITT+ L P +MSHP + D +WVEPS++ QGTAVFDATGD A MPSWD
Sbjct 8 SETEDVTITTL--LPPVAMSHPTTHSDRYSDTEWVEPSEEPQGTAVFDATGDVAAMPSWD 65
Query 86 ELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFL 145
ELVRQHADRVYRLAYRLSG+Q DAEDLTQETFIRVFRSV NYQPGTFEGWLHRITTNLFL
Sbjct 66 ELVRQHADRVYRLAYRLSGSQQDAEDLTQETFIRVFRSVHNYQPGTFEGWLHRITTNLFL 125
Query 146 DMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGPDLQAALASLPPEFRAAVVLCD 205
DMVRRR R+RMEALPEDYDRVPADEP+PEQIYHDARL PDLQAAL SL PEFRAAVVLCD
Sbjct 126 DMVRRRGRVRMEALPEDYDRVPADEPDPEQIYHDARLDPDLQAALDSLAPEFRAAVVLCD 185
Query 206 IEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLA 241
IEGLSYEE+GATLGVKLGTVRSRIHRGRQALRDYLA
Sbjct 186 IEGLSYEEVGATLGVKLGTVRSRIHRGRQALRDYLA 221
>gi|169628453|ref|YP_001702102.1| alternative RNA polymerase sigma factor [Mycobacterium abscessus
ATCC 19977]
gi|169240420|emb|CAM61448.1| Probable alternative RNA polymerase sigma factor [Mycobacterium
abscessus]
Length=256
Score = 333 bits (853), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 173/236 (74%), Positives = 191/236 (81%), Gaps = 9/236 (3%)
Query 7 PRV-GNTESQLCVADGDDLPTYCSANSEDLNITTITTLSPTSMSHPQQVRDDQWVEPS-- 63
PR+ GN + V D LPT A + I S T +S P ++V+ +
Sbjct 13 PRLSGNNTDGIWVEQADGLPTGGEAAVTEQEEHAI---SLTRISEPDYT---EFVDAANA 66
Query 64 DQLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRS 123
D+L GTAVFDATGD+A MPSWDELVR+HADRVYRLAYRLSG+Q DAEDLTQETFIRVFRS
Sbjct 67 DELSGTAVFDATGDQAAMPSWDELVREHADRVYRLAYRLSGSQQDAEDLTQETFIRVFRS 126
Query 124 VQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLG 183
+QNYQPGTFEGWLHRITTNLFLDMVRRR RIRMEALPEDYDRVPA +P+PEQIYHDA+LG
Sbjct 127 LQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRVPATDPDPEQIYHDAQLG 186
Query 184 PDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDY 239
DLQAAL SL PEFRAAVVLCDIEGLSYEEIGATL VKLGTVRSRIHRGRQA+R+Y
Sbjct 187 ADLQAALDSLAPEFRAAVVLCDIEGLSYEEIGATLDVKLGTVRSRIHRGRQAIREY 242
>gi|312138875|ref|YP_004006211.1| sigma-70 factor [Rhodococcus equi 103S]
gi|325676420|ref|ZP_08156098.1| ECF family DNA-directed RNA polymerase sigma subunit SigW [Rhodococcus
equi ATCC 33707]
gi|311888214|emb|CBH47526.1| sigma-70 factor [Rhodococcus equi 103S]
gi|325552598|gb|EGD22282.1| ECF family DNA-directed RNA polymerase sigma subunit SigW [Rhodococcus
equi ATCC 33707]
Length=224
Score = 332 bits (850), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 157/176 (90%), Positives = 166/176 (95%), Gaps = 0/176 (0%)
Query 68 GTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQNY 127
GTA FDATGDK+ MPSWDELVR+H DRVYRLAYRLSGN DAEDLTQ+TFIRVFRS+QNY
Sbjct 38 GTAAFDATGDKSAMPSWDELVREHGDRVYRLAYRLSGNAQDAEDLTQDTFIRVFRSLQNY 97
Query 128 QPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGPDLQ 187
QPGTFEGWLHRITTNLFLDMVRRR RIRMEALPEDYDRVP+D PNPEQIYHDARL PDLQ
Sbjct 98 QPGTFEGWLHRITTNLFLDMVRRRNRIRMEALPEDYDRVPSDSPNPEQIYHDARLAPDLQ 157
Query 188 AALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAH 243
+AL SL PEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALR++LAA+
Sbjct 158 SALDSLAPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALREHLAAN 213
>gi|54026703|ref|YP_120945.1| RNA polymerase sigma factor SigE [Nocardia farcinica IFM 10152]
gi|54018211|dbj|BAD59581.1| putative sigma factor [Nocardia farcinica IFM 10152]
Length=255
Score = 326 bits (836), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 155/179 (87%), Positives = 167/179 (94%), Gaps = 0/179 (0%)
Query 63 SDQLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFR 122
+++L GTA FDATGD++ MPSWDELVR+HADRVYRLAYRLSG+ DAEDLTQETFIRVFR
Sbjct 62 AEELSGTAAFDATGDRSVMPSWDELVREHADRVYRLAYRLSGDAQDAEDLTQETFIRVFR 121
Query 123 SVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARL 182
S+ NYQPGTFEGWLHRITTNLFLDMVRRR RIRMEALPEDYDRVPA+ P PEQ+YHDARL
Sbjct 122 SLSNYQPGTFEGWLHRITTNLFLDMVRRRNRIRMEALPEDYDRVPAEGPGPEQVYHDARL 181
Query 183 GPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLA 241
PDLQ+AL SL PEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALR+YLA
Sbjct 182 DPDLQSALDSLAPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALREYLA 240
>gi|226365446|ref|YP_002783229.1| RNA polymerase ECF-type sigma factor SigE [Rhodococcus opacus
B4]
gi|226243936|dbj|BAH54284.1| RNA polymerase ECF-type sigma factor SigE [Rhodococcus opacus
B4]
Length=210
Score = 323 bits (829), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 158/201 (79%), Positives = 177/201 (89%), Gaps = 2/201 (0%)
Query 43 LSPTSMSHPQQVRDDQWVEPSDQLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRL 102
+S +M+ ++ D+Q + +L GTAVFDATG+K+ MPSWDELVR+H DRVYRLAYRL
Sbjct 1 MSNHTMAPDERTTDEQLSDA--KLTGTAVFDATGEKSAMPSWDELVREHGDRVYRLAYRL 58
Query 103 SGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPED 162
SG+ DAEDLTQ+TFIRVFRS+ +YQPGTFEGWLHRITTNLFLDMVRRR RIRMEALPED
Sbjct 59 SGDAQDAEDLTQDTFIRVFRSLSDYQPGTFEGWLHRITTNLFLDMVRRRNRIRMEALPED 118
Query 163 YDRVPADEPNPEQIYHDARLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKL 222
YDRVPAD PNPE+IYHDARL DLQAAL SL PEFRAAVVLCDIEGLSYEEIGATLGVKL
Sbjct 119 YDRVPADGPNPEEIYHDARLDADLQAALDSLAPEFRAAVVLCDIEGLSYEEIGATLGVKL 178
Query 223 GTVRSRIHRGRQALRDYLAAH 243
GTVRSRIHRGRQALR++LA +
Sbjct 179 GTVRSRIHRGRQALREHLAVN 199
>gi|111022940|ref|YP_705912.1| sigma factor, sigma 70 type, group 4 (ECF) [Rhodococcus jostii
RHA1]
gi|110822470|gb|ABG97754.1| sigma factor, sigma 70 type, group 4 (ECF) [Rhodococcus jostii
RHA1]
Length=210
Score = 323 bits (827), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 158/202 (79%), Positives = 175/202 (87%), Gaps = 7/202 (3%)
Query 42 TLSPTSMSHPQQVRDDQWVEPSDQLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYR 101
T++P + +Q+ D + L GTAVFDATG+K+ MPSWDELVR+H DRVYRLAYR
Sbjct 5 TMAPDERNADEQLSDAE-------LTGTAVFDATGEKSAMPSWDELVREHGDRVYRLAYR 57
Query 102 LSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPE 161
LSG+ DAEDLTQ+TFIRVFRS+ +YQPGTFEGWLHRITTNLFLDMVRRR RIRMEALPE
Sbjct 58 LSGDAQDAEDLTQDTFIRVFRSLSDYQPGTFEGWLHRITTNLFLDMVRRRNRIRMEALPE 117
Query 162 DYDRVPADEPNPEQIYHDARLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVK 221
DYDRVPAD PNPE+IYHDARL DLQAAL SL PEFRAAVVLCDIEGLSYEEIGATLGVK
Sbjct 118 DYDRVPADGPNPEEIYHDARLDADLQAALDSLAPEFRAAVVLCDIEGLSYEEIGATLGVK 177
Query 222 LGTVRSRIHRGRQALRDYLAAH 243
LGTVRSRIHRGRQALR++LA +
Sbjct 178 LGTVRSRIHRGRQALREHLAVN 199
>gi|229493846|ref|ZP_04387619.1| sigma factor, sigma 70 type, group 4 [Rhodococcus erythropolis
SK121]
gi|229319233|gb|EEN85081.1| sigma factor, sigma 70 type, group 4 [Rhodococcus erythropolis
SK121]
Length=273
Score = 318 bits (814), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 153/179 (86%), Positives = 165/179 (93%), Gaps = 0/179 (0%)
Query 65 QLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSV 124
+L GTAVFDATG+K++MPSWDELVRQH DRVYRLAYRLSG+ DAEDLTQ+TFIRVFRS+
Sbjct 85 ELIGTAVFDATGEKSSMPSWDELVRQHGDRVYRLAYRLSGDAQDAEDLTQDTFIRVFRSL 144
Query 125 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGP 184
+YQPGTFEGWLHRITTNLFLDMVRRR RIRMEALPEDYDRVP+ P+PEQIYHDARL
Sbjct 145 SDYQPGTFEGWLHRITTNLFLDMVRRRNRIRMEALPEDYDRVPSPGPDPEQIYHDARLDA 204
Query 185 DLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAH 243
LQAAL SL PEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQA+RD+LAA
Sbjct 205 GLQAALDSLAPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQAIRDHLAAQ 263
>gi|226307645|ref|YP_002767605.1| RNA polymerase ECF-type sigma factor SigE [Rhodococcus erythropolis
PR4]
gi|226186762|dbj|BAH34866.1| putative RNA polymerase ECF-type sigma factor SigE [Rhodococcus
erythropolis PR4]
Length=273
Score = 317 bits (813), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 153/179 (86%), Positives = 165/179 (93%), Gaps = 0/179 (0%)
Query 65 QLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSV 124
+L GTAVFDATG+K++MPSWDELVRQH DRVYRLAYRLSG+ DAEDLTQ+TFIRVFRS+
Sbjct 85 ELIGTAVFDATGEKSSMPSWDELVRQHGDRVYRLAYRLSGDAQDAEDLTQDTFIRVFRSL 144
Query 125 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGP 184
+YQPGTFEGWLHRITTNLFLDMVRRR RIRMEALPEDYDRVP+ P+PEQIYHDARL
Sbjct 145 SDYQPGTFEGWLHRITTNLFLDMVRRRNRIRMEALPEDYDRVPSPGPDPEQIYHDARLDA 204
Query 185 DLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAH 243
LQAAL SL PEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQA+RD+LAA
Sbjct 205 GLQAALDSLAPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQAIRDHLAAQ 263
>gi|343928010|ref|ZP_08767475.1| RNA polymerase ECF-type sigma factor SigE [Gordonia alkanivorans
NBRC 16433]
gi|343762018|dbj|GAA14401.1| RNA polymerase ECF-type sigma factor SigE [Gordonia alkanivorans
NBRC 16433]
Length=206
Score = 307 bits (787), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 148/187 (80%), Positives = 163/187 (88%), Gaps = 0/187 (0%)
Query 68 GTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQNY 127
GTA FDATGD+ MPSWDELVR+HADRVYRLAYRLSGNQHDAEDLTQETFIRVFRS+ NY
Sbjct 17 GTAGFDATGDELLMPSWDELVREHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSLSNY 76
Query 128 QPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGPDLQ 187
+PGTFEGWLHRITTNLFLDMVRRR++IRMEALPE+YDRVPAD P+P+QI+ L PDLQ
Sbjct 77 RPGTFEGWLHRITTNLFLDMVRRRSKIRMEALPEEYDRVPADTPDPQQIFDATNLDPDLQ 136
Query 188 AALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHPEHG 247
AL SL P+FRAAVVLCDIEGLSYEEI ATLGVKLGTVRSRIHRGRQ++RD LAA
Sbjct 137 LALDSLAPDFRAAVVLCDIEGLSYEEIAATLGVKLGTVRSRIHRGRQSIRDALAAQGHTS 196
Query 248 ECAVHVN 254
+V +
Sbjct 197 SRSVAIG 203
>gi|699142|gb|AAA62908.1| rpoE [Mycobacterium leprae]
Length=172
Score = 306 bits (785), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 153/170 (90%), Positives = 157/170 (93%), Gaps = 3/170 (1%)
Query 88 VRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDM 147
+RQHA RVY LAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDM
Sbjct 1 MRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDM 60
Query 148 VRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGPDLQAALASLPPEFRAAVVLCDIE 207
VRRRARIRM+ALP+DYDRVPADEPNPEQIYHD+RLGPDLQAAL SLPPEFRAAVVLCDIE
Sbjct 61 VRRRARIRMDALPDDYDRVPADEPNPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIE 120
Query 208 GLSYEEIGATLGVKLGTVRSRIHRGRQALRDY-LAAHPEHGEC--AVHVN 254
GLSYEEIGATLGVKLGTVRSRIHRGRQALRDY L AHP G A HV
Sbjct 121 GLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLLTAHPRDGATTDATHVK 170
>gi|326382036|ref|ZP_08203729.1| RNA polymerase sigma factor SigE [Gordonia neofelifaecis NRRL
B-59395]
gi|326199462|gb|EGD56643.1| RNA polymerase sigma factor SigE [Gordonia neofelifaecis NRRL
B-59395]
Length=206
Score = 305 bits (782), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 143/177 (81%), Positives = 157/177 (89%), Gaps = 0/177 (0%)
Query 66 LQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQ 125
+GTA FDATGD+ MPSWDELV +HADRVYRLAYRLSGNQHDAEDLTQETFIRVFRS+
Sbjct 17 FRGTAGFDATGDRNLMPSWDELVSEHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSLT 76
Query 126 NYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGPD 185
NY+PGTFEGWLHRITTNLFLDMVRRR +IRMEAL +DYDR+P D P+P+Q + DA L PD
Sbjct 77 NYKPGTFEGWLHRITTNLFLDMVRRRGKIRMEALEQDYDRIPTDTPDPQQAFADANLDPD 136
Query 186 LQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAA 242
LQ AL SL PEFRAAVVLCDIEGLSYEE+G TLGVK+GTVRSRIHRGRQ +R YLAA
Sbjct 137 LQDALDSLAPEFRAAVVLCDIEGLSYEEVGTTLGVKMGTVRSRIHRGRQGIRQYLAA 193
>gi|262201798|ref|YP_003273006.1| sigma-70 family RNA polymerase sigma factor [Gordonia bronchialis
DSM 43247]
gi|262085145|gb|ACY21113.1| RNA polymerase sigma factor, sigma-70 family [Gordonia bronchialis
DSM 43247]
Length=201
Score = 303 bits (776), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 147/186 (80%), Positives = 159/186 (86%), Gaps = 0/186 (0%)
Query 68 GTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQNY 127
GTA FDATG+ MPSWDELVR+HADRVYRLAYRLSGNQHDAEDLTQETFIRVFRS+ NY
Sbjct 14 GTAGFDATGNDLLMPSWDELVREHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSLSNY 73
Query 128 QPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGPDLQ 187
+PGTFEGWLHRITTNLFLDMVRRR +IRMEALPE+YDRVPAD P+P+Q++ L PDLQ
Sbjct 74 RPGTFEGWLHRITTNLFLDMVRRRNKIRMEALPEEYDRVPADTPDPQQVFDATNLDPDLQ 133
Query 188 AALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHPEHG 247
AL SL PEFRAAVVLCDIEGLSYEEI TLGVKLGTVRSRIHRGRQ +RD LAA
Sbjct 134 RALDSLAPEFRAAVVLCDIEGLSYEEIATTLGVKLGTVRSRIHRGRQTIRDALAAQGHTS 193
Query 248 ECAVHV 253
+V V
Sbjct 194 SRSVAV 199
>gi|333921004|ref|YP_004494585.1| putative sigma factor [Amycolicicoccus subflavus DQS3-9A1]
gi|333483225|gb|AEF41785.1| Putative sigma factor [Amycolicicoccus subflavus DQS3-9A1]
Length=237
Score = 298 bits (764), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 142/175 (82%), Positives = 155/175 (89%), Gaps = 0/175 (0%)
Query 66 LQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQ 125
L GT FDA+ + +PSWDELVR+HADRVYRLAYRLSGN HDAEDLTQETFIRVFRS+
Sbjct 47 LSGTGAFDASDGQVPLPSWDELVREHADRVYRLAYRLSGNAHDAEDLTQETFIRVFRSLS 106
Query 126 NYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGPD 185
+YQPGTFEGWLHRITTNLFLDMVRRR RIRMEALPEDY+RVP+ P+PEQIYHD+RL P
Sbjct 107 SYQPGTFEGWLHRITTNLFLDMVRRRTRIRMEALPEDYERVPSGGPDPEQIYHDSRLDPH 166
Query 186 LQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYL 240
LQ AL L P++RAAVVLCDIEGLSYEEI ATLGVKLGTVRSRIHRGRQALR+ L
Sbjct 167 LQRALDGLAPDYRAAVVLCDIEGLSYEEIAATLGVKLGTVRSRIHRGRQALRENL 221
>gi|296138795|ref|YP_003646038.1| ECF subfamily RNA polymerase sigma-24 subunit [Tsukamurella paurometabola
DSM 20162]
gi|296026929|gb|ADG77699.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Tsukamurella
paurometabola DSM 20162]
Length=215
Score = 296 bits (758), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 140/180 (78%), Positives = 159/180 (89%), Gaps = 0/180 (0%)
Query 61 EPSDQLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRV 120
E + + GTA FDATGD++ MPSWDELVR+HADRVYRLAYRLSGN DAEDLTQ+TFIRV
Sbjct 23 ERATETAGTAAFDATGDRSDMPSWDELVREHADRVYRLAYRLSGNAQDAEDLTQDTFIRV 82
Query 121 FRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDA 180
FRS+Q+Y+PGTFEGWLHRITTNLFLDMVRRR RIRMEALPEDY+RVP+ +P+P QIY DA
Sbjct 83 FRSLQSYEPGTFEGWLHRITTNLFLDMVRRRNRIRMEALPEDYERVPSGDPDPGQIYADA 142
Query 181 RLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYL 240
L P LQ AL +L PEFRAAVVL DIEGLSYEE+ ATLGVKLGTVRSRIHRGR+++R+ L
Sbjct 143 NLNPQLQVALDALSPEFRAAVVLADIEGLSYEEVAATLGVKLGTVRSRIHRGRKSIREAL 202
>gi|289761366|ref|ZP_06520744.1| alternative RNA polymerase sigma factor sigE [Mycobacterium tuberculosis
GM 1503]
gi|289708872|gb|EFD72888.1| alternative RNA polymerase sigma factor sigE [Mycobacterium tuberculosis
GM 1503]
Length=201
Score = 290 bits (741), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 140/141 (99%), Positives = 140/141 (99%), Gaps = 0/141 (0%)
Query 117 FIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQI 176
IRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQI
Sbjct 61 LIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQI 120
Query 177 YHDARLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQAL 236
YHDARLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQAL
Sbjct 121 YHDARLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQAL 180
Query 237 RDYLAAHPEHGECAVHVNPVR 257
RDYLAAHPEHGECAVHVNPVR
Sbjct 181 RDYLAAHPEHGECAVHVNPVR 201
>gi|317508221|ref|ZP_07965901.1| sigma-70 family RNA polymerase sigma factor [Segniliparus rugosus
ATCC BAA-974]
gi|316253396|gb|EFV12786.1| sigma-70 family RNA polymerase sigma factor [Segniliparus rugosus
ATCC BAA-974]
Length=225
Score = 279 bits (714), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 133/188 (71%), Positives = 152/188 (81%), Gaps = 4/188 (2%)
Query 66 LQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQ 125
L+GTA FDATG + MPSWDELVR+H RVYR+AYRL+GNQ DAEDLTQETFIRVFRS+
Sbjct 30 LEGTARFDATGQASDMPSWDELVREHGARVYRIAYRLTGNQQDAEDLTQETFIRVFRSLH 89
Query 126 NYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGPD 185
Y+PG FEGWLHRI TNLFLD RR+ +IRMEALPEDY+RVP+ P+PE + DA L P
Sbjct 90 TYRPGVFEGWLHRIATNLFLDQARRKTKIRMEALPEDYERVPSGAPSPEDVVADADLDPV 149
Query 186 LQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAA--- 242
LQ AL SLPPEFRA VVLCDIEGLSYEE+GA+LGVKLGTVRSR+HR RQ++RD + A
Sbjct 150 LQTALDSLPPEFRAVVVLCDIEGLSYEEVGASLGVKLGTVRSRLHRARQSIRDNIIAARA 209
Query 243 -HPEHGEC 249
P GE
Sbjct 210 RAPHRGEA 217
>gi|257054709|ref|YP_003132541.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
viridis DSM 43017]
gi|256584581|gb|ACU95714.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
viridis DSM 43017]
Length=197
Score = 278 bits (712), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 134/179 (75%), Positives = 148/179 (83%), Gaps = 0/179 (0%)
Query 62 PSDQLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVF 121
P D Q V T P+WDE+VRQHADRVYRLAYRL+GN HDAEDLTQETFIRVF
Sbjct 7 PHDSTQTAPVLVEDDATWTPPTWDEVVRQHADRVYRLAYRLTGNAHDAEDLTQETFIRVF 66
Query 122 RSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDAR 181
RS+ +Y+PGTFEGWLHRITTNLFLDM RRR+R+RME LPED DR+ D P+PEQ+Y D
Sbjct 67 RSLASYKPGTFEGWLHRITTNLFLDMARRRSRVRMEGLPEDTDRLVGDGPSPEQVYSDTH 126
Query 182 LGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYL 240
L PDLQAAL LPPEF+AAVVLCD+EGLSYEEIGATLGVKLGTVRSRIHRGRQAL+ L
Sbjct 127 LDPDLQAALDELPPEFKAAVVLCDVEGLSYEEIGATLGVKLGTVRSRIHRGRQALKSSL 185
>gi|300782995|ref|YP_003763286.1| RNA polymerase sigma-70 factor, ECF subfamily [Amycolatopsis
mediterranei U32]
gi|299792509|gb|ADJ42884.1| RNA polymerase sigma-70 factor, ECF subfamily [Amycolatopsis
mediterranei U32]
gi|340524372|gb|AEK39577.1| RNA polymerase sigma-70 factor, ECF subfamily protein [Amycolatopsis
mediterranei S699]
Length=203
Score = 277 bits (709), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 132/175 (76%), Positives = 146/175 (84%), Gaps = 0/175 (0%)
Query 80 TMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRI 139
T PSWDE+VR+H DRVYRLAYRL+GN HDAEDLTQETFIRVFRS+ +Y+PGTFEGWLHRI
Sbjct 28 TPPSWDEVVREHGDRVYRLAYRLTGNAHDAEDLTQETFIRVFRSLASYKPGTFEGWLHRI 87
Query 140 TTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGPDLQAALASLPPEFRA 199
TTNLFLDM RRR+R+RME LPED DR+ D+P+PEQ+Y D L PDLQAAL LPPEFRA
Sbjct 88 TTNLFLDMARRRSRVRMEGLPEDTDRIVGDDPSPEQVYSDTHLDPDLQAALDELPPEFRA 147
Query 200 AVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHPEHGECAVHVN 254
AVVLCD+EGLSYEEIGATL VKLGTVRSRIHRGRQALR L H + V
Sbjct 148 AVVLCDVEGLSYEEIGATLNVKLGTVRSRIHRGRQALRASLERRRAHAPQSAKVT 202
>gi|256374942|ref|YP_003098602.1| ECF subfamily RNA polymerase sigma-24 subunit [Actinosynnema
mirum DSM 43827]
gi|255919245|gb|ACU34756.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Actinosynnema
mirum DSM 43827]
Length=194
Score = 277 bits (708), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 130/158 (83%), Positives = 145/158 (92%), Gaps = 0/158 (0%)
Query 80 TMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRI 139
T P+WDE+VR+HADRVYRLAYRL+GNQHDAEDLTQETFIRVFRS+ +Y+PGTFEGWLHRI
Sbjct 23 TPPTWDEVVREHADRVYRLAYRLTGNQHDAEDLTQETFIRVFRSLASYKPGTFEGWLHRI 82
Query 140 TTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGPDLQAALASLPPEFRA 199
TTNLFLDM RRR+R+RME LPED DR+ D+P+PEQ+Y + L PDLQAAL LPPEFRA
Sbjct 83 TTNLFLDMARRRSRLRMEGLPEDTDRLAGDDPSPEQVYTETHLDPDLQAALDELPPEFRA 142
Query 200 AVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALR 237
AVVLCD+EGLSYEEIGATLGVKLGTVRSRIHRGRQALR
Sbjct 143 AVVLCDVEGLSYEEIGATLGVKLGTVRSRIHRGRQALR 180
>gi|302524349|ref|ZP_07276691.1| RNA polymerase sigma-W factor [Streptomyces sp. AA4]
gi|302433244|gb|EFL05060.1| RNA polymerase sigma-W factor [Streptomyces sp. AA4]
Length=219
Score = 275 bits (702), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 132/168 (79%), Positives = 144/168 (86%), Gaps = 0/168 (0%)
Query 73 DATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTF 132
DA T PSWDE+VR+HADRVYRLAYRL+GN HDAEDLTQETFIRVFRS+ +Y+PGTF
Sbjct 37 DAAEAAWTPPSWDEVVREHADRVYRLAYRLTGNTHDAEDLTQETFIRVFRSLASYKPGTF 96
Query 133 EGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGPDLQAALAS 192
EGWLHRITTNLFLDM RRR+R+RME LPED DR+ D+P+PEQ Y D L PDLQ AL
Sbjct 97 EGWLHRITTNLFLDMARRRSRVRMEGLPEDTDRIVGDDPSPEQHYSDTHLDPDLQEALDE 156
Query 193 LPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYL 240
LPPEFRAAVVLCD+EGLSYEEIGATLGVKLGTVRSRIHRGR ALR L
Sbjct 157 LPPEFRAAVVLCDVEGLSYEEIGATLGVKLGTVRSRIHRGRSALRASL 204
>gi|259506865|ref|ZP_05749765.1| RNA polymerase sigma-70 factor, ECF subfamily [Corynebacterium
efficiens YS-314]
gi|259165497|gb|EEW50051.1| RNA polymerase sigma-70 factor, ECF subfamily [Corynebacterium
efficiens YS-314]
Length=213
Score = 274 bits (700), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 133/189 (71%), Positives = 152/189 (81%), Gaps = 2/189 (1%)
Query 60 VEPSDQLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIR 119
VEP+++L GTA FDA +A MPSW ELV +HAD VYRLA+RLSGNQHDAEDLTQETF+R
Sbjct 18 VEPTEELSGTAAFDA--GQAEMPSWGELVAEHADSVYRLAFRLSGNQHDAEDLTQETFMR 75
Query 120 VFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHD 179
VFRS++NYQPGTFEGWLHRITTNLFLDMVR R +IRMEALPEDY+RVP ++ PEQ Y
Sbjct 76 VFRSLKNYQPGTFEGWLHRITTNLFLDMVRHRGKIRMEALPEDYERVPGNDMTPEQAYTV 135
Query 180 ARLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDY 239
A L P LQ AL L P+FR AV+LCD+ GLSY+EI TLGVK+GTVRSRIHRGR LR
Sbjct 136 ANLDPALQEALDDLSPDFRVAVILCDVVGLSYDEIAETLGVKMGTVRSRIHRGRTQLRAS 195
Query 240 LAAHPEHGE 248
L A + E
Sbjct 196 LEAAAQDNE 204
>gi|25027733|ref|NP_737787.1| RNA polymerase sigma factor SigE [Corynebacterium efficiens YS-314]
gi|23493015|dbj|BAC17987.1| putative RNA polymerase sigma factor [Corynebacterium efficiens
YS-314]
Length=216
Score = 273 bits (699), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 133/189 (71%), Positives = 152/189 (81%), Gaps = 2/189 (1%)
Query 60 VEPSDQLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIR 119
VEP+++L GTA FDA +A MPSW ELV +HAD VYRLA+RLSGNQHDAEDLTQETF+R
Sbjct 21 VEPTEELSGTAAFDA--GQAEMPSWGELVAEHADSVYRLAFRLSGNQHDAEDLTQETFMR 78
Query 120 VFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHD 179
VFRS++NYQPGTFEGWLHRITTNLFLDMVR R +IRMEALPEDY+RVP ++ PEQ Y
Sbjct 79 VFRSLKNYQPGTFEGWLHRITTNLFLDMVRHRGKIRMEALPEDYERVPGNDMTPEQAYTV 138
Query 180 ARLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDY 239
A L P LQ AL L P+FR AV+LCD+ GLSY+EI TLGVK+GTVRSRIHRGR LR
Sbjct 139 ANLDPALQEALDDLSPDFRVAVILCDVVGLSYDEIAETLGVKMGTVRSRIHRGRTQLRAS 198
Query 240 LAAHPEHGE 248
L A + E
Sbjct 199 LEAAAQDNE 207
>gi|62390010|ref|YP_225412.1| RNA polymerase sigma factor SigE [Corynebacterium glutamicum
ATCC 13032]
gi|41325346|emb|CAF19826.1| PUTATIVE RNA POLYMERASE SIGMA FACTOR, ECF family [Corynebacterium
glutamicum ATCC 13032]
Length=216
Score = 270 bits (691), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 129/182 (71%), Positives = 150/182 (83%), Gaps = 2/182 (1%)
Query 61 EPSDQLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRV 120
E +++L GTA FDA +A MP+W ELV +HAD VYRLAYRLSGNQHDAEDLTQETF+RV
Sbjct 22 EHAEELTGTAAFDA--GQADMPTWGELVAEHADSVYRLAYRLSGNQHDAEDLTQETFMRV 79
Query 121 FRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDA 180
FRS+++YQPGTFEGWLHRITTNLFLDMVR R +IRMEALPEDY+RVP ++ PEQ Y +A
Sbjct 80 FRSLKSYQPGTFEGWLHRITTNLFLDMVRHRGKIRMEALPEDYERVPGNDITPEQAYTEA 139
Query 181 RLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYL 240
L P LQAAL L P+FR AV+LCD+ G+SY+EI TLGVK+GTVRSRIHRGR LR L
Sbjct 140 NLDPALQAALDELSPDFRVAVILCDVVGMSYDEIAETLGVKMGTVRSRIHRGRSQLRASL 199
Query 241 AA 242
A
Sbjct 200 EA 201
>gi|19552346|ref|NP_600348.1| RNA polymerase sigma factor SigE [Corynebacterium glutamicum
ATCC 13032]
gi|145295263|ref|YP_001138084.1| RNA polymerase sigma factor SigE [Corynebacterium glutamicum
R]
gi|21323887|dbj|BAB98513.1| DNA-directed RNA polymerase specialized sigma subunits, sigma24
homologs [Corynebacterium glutamicum ATCC 13032]
gi|140845183|dbj|BAF54182.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344045764|gb|EGV41434.1| RNA polymerase sigma factor SigE [Corynebacterium glutamicum
S9114]
Length=213
Score = 270 bits (690), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 129/182 (71%), Positives = 150/182 (83%), Gaps = 2/182 (1%)
Query 61 EPSDQLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRV 120
E +++L GTA FDA +A MP+W ELV +HAD VYRLAYRLSGNQHDAEDLTQETF+RV
Sbjct 19 EHAEELTGTAAFDA--GQADMPTWGELVAEHADSVYRLAYRLSGNQHDAEDLTQETFMRV 76
Query 121 FRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDA 180
FRS+++YQPGTFEGWLHRITTNLFLDMVR R +IRMEALPEDY+RVP ++ PEQ Y +A
Sbjct 77 FRSLKSYQPGTFEGWLHRITTNLFLDMVRHRGKIRMEALPEDYERVPGNDITPEQAYTEA 136
Query 181 RLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYL 240
L P LQAAL L P+FR AV+LCD+ G+SY+EI TLGVK+GTVRSRIHRGR LR L
Sbjct 137 NLDPALQAALDELSPDFRVAVILCDVVGMSYDEIAETLGVKMGTVRSRIHRGRSQLRASL 196
Query 241 AA 242
A
Sbjct 197 EA 198
>gi|225022882|ref|ZP_03712074.1| hypothetical protein CORMATOL_02928 [Corynebacterium matruchotii
ATCC 33806]
gi|224944105|gb|EEG25314.1| hypothetical protein CORMATOL_02928 [Corynebacterium matruchotii
ATCC 33806]
Length=217
Score = 269 bits (687), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 136/203 (67%), Positives = 157/203 (78%), Gaps = 7/203 (3%)
Query 46 TSMSHPQQVRD--DQWVEPSDQLQGTAVFDA-TGDKATMPSWDELVRQHADRVYRLAYRL 102
T+ P + D D +E D LQGTA FDA GD MPSW ++V QHAD VYRLAYRL
Sbjct 6 TAQDFPHEAFDHEDDTLEGQD-LQGTAAFDAGVGD---MPSWGDIVAQHADSVYRLAYRL 61
Query 103 SGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPED 162
SGNQHDAEDLTQETF+RVFRS++NYQPGTFEGWLHRITTNLFLDMVR R++I ME+LPED
Sbjct 62 SGNQHDAEDLTQETFMRVFRSIKNYQPGTFEGWLHRITTNLFLDMVRHRSKISMESLPED 121
Query 163 YDRVPADEPNPEQIYHDARLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKL 222
Y+RVP + PEQ+Y +A L P LQ AL SL P+F+ AVVLCD+ G+SY+EI TLGVK+
Sbjct 122 YERVPGTDMTPEQVYTEANLDPALQEALDSLAPDFKVAVVLCDVVGMSYDEIADTLGVKM 181
Query 223 GTVRSRIHRGRQALRDYLAAHPE 245
GTVRSRIHRGR LR L A E
Sbjct 182 GTVRSRIHRGRSQLRAALEAKAE 204
>gi|305681839|ref|ZP_07404643.1| RNA polymerase sigma factor SigE [Corynebacterium matruchotii
ATCC 14266]
gi|305658312|gb|EFM47815.1| RNA polymerase sigma factor SigE [Corynebacterium matruchotii
ATCC 14266]
Length=196
Score = 268 bits (686), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 130/181 (72%), Positives = 148/181 (82%), Gaps = 4/181 (2%)
Query 66 LQGTAVFDA-TGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSV 124
LQGTA FDA GD MPSW ++V QHAD VYRLAYRLSGNQHDAEDLTQETF+RVFRS+
Sbjct 6 LQGTAAFDAGVGD---MPSWGDIVAQHADSVYRLAYRLSGNQHDAEDLTQETFMRVFRSI 62
Query 125 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGP 184
+NYQPGTFEGWLHRITTNLFLDMVR R++I ME+LPEDY+RVP + PEQ+Y +A L P
Sbjct 63 KNYQPGTFEGWLHRITTNLFLDMVRHRSKISMESLPEDYERVPGTDMTPEQVYTEANLDP 122
Query 185 DLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP 244
LQ AL SL P+F+ AVVLCD+ G+SY+EI TLGVK+GTVRSRIHRGR LR L A
Sbjct 123 ALQEALDSLAPDFKVAVVLCDVMGMSYDEIADTLGVKMGTVRSRIHRGRSQLRAALEAKA 182
Query 245 E 245
E
Sbjct 183 E 183
>gi|325002583|ref|ZP_08123695.1| RNA polymerase, sigma-24 subunit, ECF subfamily protein [Pseudonocardia
sp. P1]
Length=211
Score = 268 bits (684), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 130/168 (78%), Positives = 142/168 (85%), Gaps = 0/168 (0%)
Query 76 GDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGW 135
G T PSWDE+VR+HADRVYRLAYRLSGNQHDAEDLTQETFIRVFRS+ +Y+PGTFEGW
Sbjct 23 GADWTPPSWDEVVREHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSLASYKPGTFEGW 82
Query 136 LHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGPDLQAALASLPP 195
LHRITTNLFLDMVRRRAR+RME LPED +R+P P PE ++ L P LQAAL LPP
Sbjct 83 LHRITTNLFLDMVRRRARLRMEGLPEDTERLPGGGPEPETVFAINHLDPHLQAALDELPP 142
Query 196 EFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAH 243
+FR AVVLCD+EGLSYEEIGATLGVKLGTVRSRIHRGR ALR L H
Sbjct 143 DFRVAVVLCDVEGLSYEEIGATLGVKLGTVRSRIHRGRTALRASLERH 190
>gi|296394494|ref|YP_003659378.1| ECF subfamily RNA polymerase sigma-24 factor [Segniliparus rotundus
DSM 44985]
gi|296181641|gb|ADG98547.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Segniliparus
rotundus DSM 44985]
Length=226
Score = 267 bits (682), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 124/178 (70%), Positives = 146/178 (83%), Gaps = 0/178 (0%)
Query 66 LQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQ 125
L+GTA FD TG + MPSW+ LVR+H RVYR+AYRL+GNQ DAEDLTQETF+RVFRS+
Sbjct 31 LEGTARFDMTGQASDMPSWEALVREHGARVYRIAYRLTGNQQDAEDLTQETFLRVFRSLH 90
Query 126 NYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGPD 185
Y+PG FEGWL RI TNLFLD RR+ +IRMEALPEDY+RVP+ P+PE++ DA L P
Sbjct 91 AYRPGVFEGWLRRIATNLFLDQARRKTKIRMEALPEDYERVPSGAPSPEEVLVDADLDPA 150
Query 186 LQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAH 243
LQ+AL SLPP+FRA VVLCDIEGLSYEE+ +LGVKLGTVRSR+HR RQA+RD L A
Sbjct 151 LQSALDSLPPDFRAVVVLCDIEGLSYEEVATSLGVKLGTVRSRLHRARQAIRDSLLAQ 208
>gi|227548420|ref|ZP_03978469.1| RNA polymerase sigma factor SigE [Corynebacterium lipophiloflavum
DSM 44291]
gi|227079464|gb|EEI17427.1| RNA polymerase sigma factor SigE [Corynebacterium lipophiloflavum
DSM 44291]
Length=200
Score = 266 bits (680), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 131/194 (68%), Positives = 149/194 (77%), Gaps = 2/194 (1%)
Query 64 DQLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRS 123
D L GTA FDA + MPSW ELV +HA+ VYRLA+RLSGNQHDAEDLTQETF+RVFRS
Sbjct 9 DTLTGTAAFDAGAGE--MPSWAELVAEHANSVYRLAFRLSGNQHDAEDLTQETFMRVFRS 66
Query 124 VQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLG 183
+++YQPGTFEGWLHRITTNLFLDMVR RA+IRMEALPEDY+RVP + PEQ Y + L
Sbjct 67 LKSYQPGTFEGWLHRITTNLFLDMVRHRAKIRMEALPEDYERVPGTDMTPEQAYSVSNLD 126
Query 184 PDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAH 243
P LQ AL L P+FR AVVLCD+ G++YEEI ATLGVK+GTVRSRIHRGR LR L
Sbjct 127 PALQTALDELSPDFRVAVVLCDVVGMTYEEIAATLGVKMGTVRSRIHRGRSQLRRSLETQ 186
Query 244 PEHGECAVHVNPVR 257
E A + VR
Sbjct 187 AASDESAKELIRVR 200
>gi|258652367|ref|YP_003201523.1| ECF subfamily RNA polymerase sigma-24 subunit [Nakamurella multipartita
DSM 44233]
gi|258555592|gb|ACV78534.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Nakamurella
multipartita DSM 44233]
Length=213
Score = 266 bits (679), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 128/164 (79%), Positives = 143/164 (88%), Gaps = 0/164 (0%)
Query 74 ATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFE 133
+TG T P+WDE+VR H DRVYRLAYRLSGN HDAED+TQETFIRVFRS+ ++QPG+FE
Sbjct 24 STGPVWTPPAWDEIVRDHGDRVYRLAYRLSGNAHDAEDITQETFIRVFRSLASFQPGSFE 83
Query 134 GWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGPDLQAALASL 193
GWLHRITTN+FLDMVRRR RIRMEALPE+ DR+ EP+PEQ + DA L PDLQAAL L
Sbjct 84 GWLHRITTNVFLDMVRRRQRIRMEALPEETDRIAGREPSPEQAFSDAHLDPDLQAALDDL 143
Query 194 PPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALR 237
PEFRAAVVLCD+EGL+YEEIGATLGVKLGTVRSRIHRGR ALR
Sbjct 144 LPEFRAAVVLCDVEGLTYEEIGATLGVKLGTVRSRIHRGRLALR 187
>gi|38233589|ref|NP_939356.1| RNA polymerase sigma factor SigE [Corynebacterium diphtheriae
NCTC 13129]
gi|38199849|emb|CAE49512.1| Putative ECF family RNA polymerase sigma factor [Corynebacterium
diphtheriae]
Length=239
Score = 265 bits (678), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 131/189 (70%), Positives = 150/189 (80%), Gaps = 4/189 (2%)
Query 63 SDQLQGTAVFDA-TGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVF 121
+++L GTA FDA GD MPSW+ELV QHAD VYRLA+RLSGNQHDAEDLTQETF+RVF
Sbjct 46 TEELTGTAAFDAGVGD---MPSWEELVAQHADSVYRLAFRLSGNQHDAEDLTQETFMRVF 102
Query 122 RSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDAR 181
RS++ YQPGTFEGWLHRITTNLFLDMVR RA+IRMEALPEDY+RVP + PEQ Y+ +
Sbjct 103 RSLKGYQPGTFEGWLHRITTNLFLDMVRHRAKIRMEALPEDYERVPGTDMTPEQAYNVSN 162
Query 182 LGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLA 241
L P LQ AL L P+FR AVVLCD+ G+SY+EI TLGVK+GTVRSRIHRGR LR +L
Sbjct 163 LDPALQKALDDLSPDFRVAVVLCDVVGMSYDEIADTLGVKMGTVRSRIHRGRSQLRAHLE 222
Query 242 AHPEHGECA 250
E A
Sbjct 223 NQATSDEGA 231
Lambda K H
0.318 0.135 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 380985698940
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40