BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1222 Length=154 Score E Sequences producing significant alignments: (Bits) Value gi|148661009|ref|YP_001282532.1| hypothetical protein MRA_1231 [... 309 7e-83 gi|15840666|ref|NP_335703.1| hypothetical protein MT1260 [Mycoba... 308 2e-82 gi|148822437|ref|YP_001287191.1| hypothetical protein TBFG_11246... 307 3e-82 gi|339297849|gb|AEJ49959.1| hypothetical protein CCDC5180_1122 [... 306 6e-82 gi|15608362|ref|NP_215738.1| hypothetical protein Rv1222 [Mycoba... 306 9e-82 gi|323720280|gb|EGB29378.1| hypothetical protein TMMG_01916 [Myc... 305 2e-81 gi|340626235|ref|YP_004744687.1| hypothetical protein MCAN_12361... 295 2e-78 gi|308231781|ref|ZP_07663929.1| hypothetical protein TMAG_01853 ... 287 4e-76 gi|15827527|ref|NP_301790.1| hypothetical protein ML1077 [Mycoba... 197 4e-49 gi|296170126|ref|ZP_06851725.1| conserved hypothetical protein [... 196 8e-49 gi|118619620|ref|YP_907952.1| hypothetical protein MUL_4518 [Myc... 196 9e-49 gi|118463820|ref|YP_880609.1| RNA polymerase sigma-70 factor [My... 192 2e-47 gi|2062635|gb|AAC45220.1| unknown [Mycobacterium avium] 190 6e-47 gi|41408654|ref|NP_961490.1| hypothetical protein MAP2556c [Myco... 190 7e-47 gi|342862105|ref|ZP_08718748.1| RNA polymerase sigma-70 factor [... 189 8e-47 gi|240168998|ref|ZP_04747657.1| hypothetical protein MkanA1_0677... 189 1e-46 gi|254822083|ref|ZP_05227084.1| RNA polymerase sigma-70 factor [... 186 1e-45 gi|254774243|ref|ZP_05215759.1| hypothetical protein MaviaA2_061... 181 3e-44 gi|118470197|ref|YP_889321.1| hypothetical protein MSMEG_5071 [M... 177 4e-43 gi|2062638|gb|AAC45222.1| unknown [Mycobacterium smegmatis] 177 4e-43 gi|108800957|ref|YP_641154.1| hypothetical protein Mmcs_3993 [My... 177 5e-43 gi|126436582|ref|YP_001072273.1| hypothetical protein Mjls_4007 ... 175 2e-42 gi|333989836|ref|YP_004522450.1| hypothetical protein JDM601_119... 171 4e-41 gi|120405447|ref|YP_955276.1| hypothetical protein Mvan_4495 [My... 158 2e-37 gi|315443257|ref|YP_004076136.1| hypothetical protein Mspyr1_163... 153 1e-35 gi|145222789|ref|YP_001133467.1| hypothetical protein Mflv_2201 ... 150 7e-35 gi|169628454|ref|YP_001702103.1| hypothetical protein MAB_1363 [... 141 3e-32 gi|226365447|ref|YP_002783230.1| hypothetical protein ROP_60380 ... 113 1e-23 gi|111022941|ref|YP_705913.1| hypothetical protein RHA1_ro05978 ... 111 5e-23 gi|312138876|ref|YP_004006212.1| hypothetical protein REQ_14470 ... 107 7e-22 gi|226307644|ref|YP_002767604.1| hypothetical protein RER_41570 ... 100 9e-20 gi|54026704|ref|YP_120946.1| hypothetical protein nfa47300 [Noca... 99.0 2e-19 gi|229493853|ref|ZP_04387626.1| RNA polymerase sigma-70 factor [... 97.8 4e-19 gi|296138796|ref|YP_003646039.1| hypothetical protein Tpau_1068 ... 97.1 9e-19 gi|343928011|ref|ZP_08767476.1| hypothetical protein GOALK_100_0... 95.1 3e-18 gi|333921003|ref|YP_004494584.1| hypothetical protein AS9A_3343 ... 89.0 2e-16 gi|296394493|ref|YP_003659377.1| hypothetical protein Srot_2091 ... 73.6 9e-12 gi|317508222|ref|ZP_07965902.1| agrin [Segniliparus rugosus ATCC... 70.1 9e-11 gi|237785245|ref|YP_002905950.1| anti-sigma factor [Corynebacter... 68.9 2e-10 gi|38233590|ref|NP_939357.1| hypothetical protein DIP0995 [Coryn... 65.5 3e-09 gi|227487902|ref|ZP_03918218.1| conserved hypothetical protein [... 61.6 4e-08 gi|325002582|ref|ZP_08123694.1| hypothetical protein PseP1_27637... 61.6 4e-08 gi|262201799|ref|YP_003273007.1| hypothetical protein Gbro_1858 ... 61.6 4e-08 gi|300858210|ref|YP_003783193.1| anti-sigma factor [Corynebacter... 60.1 1e-07 gi|291453975|ref|ZP_06593365.1| conserved hypothetical protein [... 59.3 2e-07 gi|326382037|ref|ZP_08203730.1| hypothetical protein SCNU_03797 ... 58.9 3e-07 gi|337290464|ref|YP_004629485.1| anti-sigma factor [Corynebacter... 58.9 3e-07 gi|258652368|ref|YP_003201524.1| hypothetical protein Namu_2157 ... 58.5 3e-07 gi|227548419|ref|ZP_03978468.1| conserved hypothetical protein [... 57.8 6e-07 gi|331694894|ref|YP_004331133.1| hypothetical protein Psed_1029 ... 57.4 8e-07 >gi|148661009|ref|YP_001282532.1| hypothetical protein MRA_1231 [Mycobacterium tuberculosis H37Ra] gi|167967896|ref|ZP_02550173.1| hypothetical protein MtubH3_07623 [Mycobacterium tuberculosis H37Ra] gi|253799734|ref|YP_003032735.1| RNA polymerase sigma-70 factor [Mycobacterium tuberculosis KZN 1435] 18 more sequence titles Length=219 Score = 309 bits (792), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 154/154 (100%), Positives = 154/154 (100%), Gaps = 0/154 (0%) Query 1 MADPGSVGHVFRRAFSWLPAQFASQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAH 60 MADPGSVGHVFRRAFSWLPAQFASQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAH Sbjct 66 MADPGSVGHVFRRAFSWLPAQFASQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAH 125 Query 61 LRAAHHLSLCAQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEIPRCPPEGPSKGSSG 120 LRAAHHLSLCAQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEIPRCPPEGPSKGSSG Sbjct 126 LRAAHHLSLCAQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEIPRCPPEGPSKGSSG 185 Query 121 GSSQGPPDGAAAGFGDRFADGDGGNRGRQSRVRR 154 GSSQGPPDGAAAGFGDRFADGDGGNRGRQSRVRR Sbjct 186 GSSQGPPDGAAAGFGDRFADGDGGNRGRQSRVRR 219 >gi|15840666|ref|NP_335703.1| hypothetical protein MT1260 [Mycobacterium tuberculosis CDC1551] gi|13880852|gb|AAK45517.1| hypothetical protein MT1260 [Mycobacterium tuberculosis CDC1551] Length=219 Score = 308 bits (789), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 153/154 (99%), Positives = 153/154 (99%), Gaps = 0/154 (0%) Query 1 MADPGSVGHVFRRAFSWLPAQFASQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAH 60 MADPGSVGHVFRRAFSWLPAQF SQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAH Sbjct 66 MADPGSVGHVFRRAFSWLPAQFTSQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAH 125 Query 61 LRAAHHLSLCAQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEIPRCPPEGPSKGSSG 120 LRAAHHLSLCAQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEIPRCPPEGPSKGSSG Sbjct 126 LRAAHHLSLCAQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEIPRCPPEGPSKGSSG 185 Query 121 GSSQGPPDGAAAGFGDRFADGDGGNRGRQSRVRR 154 GSSQGPPDGAAAGFGDRFADGDGGNRGRQSRVRR Sbjct 186 GSSQGPPDGAAAGFGDRFADGDGGNRGRQSRVRR 219 >gi|148822437|ref|YP_001287191.1| hypothetical protein TBFG_11246 [Mycobacterium tuberculosis F11] gi|254231484|ref|ZP_04924811.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|2062625|gb|AAC45269.1| unknown [Mycobacterium tuberculosis H37Rv] gi|124600543|gb|EAY59553.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|148720964|gb|ABR05589.1| conserved hypothetical protein [Mycobacterium tuberculosis F11] Length=193 Score = 307 bits (787), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 154/154 (100%), Positives = 154/154 (100%), Gaps = 0/154 (0%) Query 1 MADPGSVGHVFRRAFSWLPAQFASQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAH 60 MADPGSVGHVFRRAFSWLPAQFASQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAH Sbjct 40 MADPGSVGHVFRRAFSWLPAQFASQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAH 99 Query 61 LRAAHHLSLCAQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEIPRCPPEGPSKGSSG 120 LRAAHHLSLCAQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEIPRCPPEGPSKGSSG Sbjct 100 LRAAHHLSLCAQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEIPRCPPEGPSKGSSG 159 Query 121 GSSQGPPDGAAAGFGDRFADGDGGNRGRQSRVRR 154 GSSQGPPDGAAAGFGDRFADGDGGNRGRQSRVRR Sbjct 160 GSSQGPPDGAAAGFGDRFADGDGGNRGRQSRVRR 193 >gi|339297849|gb|AEJ49959.1| hypothetical protein CCDC5180_1122 [Mycobacterium tuberculosis CCDC5180] Length=156 Score = 306 bits (784), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 154/154 (100%), Positives = 154/154 (100%), Gaps = 0/154 (0%) Query 1 MADPGSVGHVFRRAFSWLPAQFASQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAH 60 MADPGSVGHVFRRAFSWLPAQFASQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAH Sbjct 3 MADPGSVGHVFRRAFSWLPAQFASQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAH 62 Query 61 LRAAHHLSLCAQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEIPRCPPEGPSKGSSG 120 LRAAHHLSLCAQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEIPRCPPEGPSKGSSG Sbjct 63 LRAAHHLSLCAQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEIPRCPPEGPSKGSSG 122 Query 121 GSSQGPPDGAAAGFGDRFADGDGGNRGRQSRVRR 154 GSSQGPPDGAAAGFGDRFADGDGGNRGRQSRVRR Sbjct 123 GSSQGPPDGAAAGFGDRFADGDGGNRGRQSRVRR 156 >gi|15608362|ref|NP_215738.1| hypothetical protein Rv1222 [Mycobacterium tuberculosis H37Rv] gi|31792415|ref|NP_854908.1| hypothetical protein Mb1254 [Mycobacterium bovis AF2122/97] gi|121637151|ref|YP_977374.1| hypothetical protein BCG_1282 [Mycobacterium bovis BCG str. Pasteur 1173P2] 46 more sequence titles Length=154 Score = 306 bits (783), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 154/154 (100%), Positives = 154/154 (100%), Gaps = 0/154 (0%) Query 1 MADPGSVGHVFRRAFSWLPAQFASQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAH 60 MADPGSVGHVFRRAFSWLPAQFASQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAH Sbjct 1 MADPGSVGHVFRRAFSWLPAQFASQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAH 60 Query 61 LRAAHHLSLCAQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEIPRCPPEGPSKGSSG 120 LRAAHHLSLCAQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEIPRCPPEGPSKGSSG Sbjct 61 LRAAHHLSLCAQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEIPRCPPEGPSKGSSG 120 Query 121 GSSQGPPDGAAAGFGDRFADGDGGNRGRQSRVRR 154 GSSQGPPDGAAAGFGDRFADGDGGNRGRQSRVRR Sbjct 121 GSSQGPPDGAAAGFGDRFADGDGGNRGRQSRVRR 154 >gi|323720280|gb|EGB29378.1| hypothetical protein TMMG_01916 [Mycobacterium tuberculosis CDC1551A] Length=154 Score = 305 bits (781), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 153/154 (99%), Positives = 153/154 (99%), Gaps = 0/154 (0%) Query 1 MADPGSVGHVFRRAFSWLPAQFASQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAH 60 MADPGSVGHVFRRAFSWLPAQF SQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAH Sbjct 1 MADPGSVGHVFRRAFSWLPAQFTSQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAH 60 Query 61 LRAAHHLSLCAQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEIPRCPPEGPSKGSSG 120 LRAAHHLSLCAQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEIPRCPPEGPSKGSSG Sbjct 61 LRAAHHLSLCAQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEIPRCPPEGPSKGSSG 120 Query 121 GSSQGPPDGAAAGFGDRFADGDGGNRGRQSRVRR 154 GSSQGPPDGAAAGFGDRFADGDGGNRGRQSRVRR Sbjct 121 GSSQGPPDGAAAGFGDRFADGDGGNRGRQSRVRR 154 >gi|340626235|ref|YP_004744687.1| hypothetical protein MCAN_12361 [Mycobacterium canettii CIPT 140010059] gi|340004425|emb|CCC43568.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059] Length=148 Score = 295 bits (755), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 148/148 (100%), Positives = 148/148 (100%), Gaps = 0/148 (0%) Query 1 MADPGSVGHVFRRAFSWLPAQFASQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAH 60 MADPGSVGHVFRRAFSWLPAQFASQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAH Sbjct 1 MADPGSVGHVFRRAFSWLPAQFASQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAH 60 Query 61 LRAAHHLSLCAQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEIPRCPPEGPSKGSSG 120 LRAAHHLSLCAQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEIPRCPPEGPSKGSSG Sbjct 61 LRAAHHLSLCAQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEIPRCPPEGPSKGSSG 120 Query 121 GSSQGPPDGAAAGFGDRFADGDGGNRGR 148 GSSQGPPDGAAAGFGDRFADGDGGNRGR Sbjct 121 GSSQGPPDGAAAGFGDRFADGDGGNRGR 148 >gi|308231781|ref|ZP_07663929.1| hypothetical protein TMAG_01853 [Mycobacterium tuberculosis SUMu001] gi|308216094|gb|EFO75493.1| hypothetical protein TMAG_01853 [Mycobacterium tuberculosis SUMu001] gi|339294209|gb|AEJ46320.1| hypothetical protein CCDC5079_1130 [Mycobacterium tuberculosis CCDC5079] Length=145 Score = 287 bits (734), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 144/145 (99%), Positives = 145/145 (100%), Gaps = 0/145 (0%) Query 10 VFRRAFSWLPAQFASQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAHLRAAHHLSL 69 +FRRAFSWLPAQFASQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAHLRAAHHLSL Sbjct 1 MFRRAFSWLPAQFASQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAHLRAAHHLSL 60 Query 70 CAQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEIPRCPPEGPSKGSSGGSSQGPPDG 129 CAQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEIPRCPPEGPSKGSSGGSSQGPPDG Sbjct 61 CAQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEIPRCPPEGPSKGSSGGSSQGPPDG 120 Query 130 AAAGFGDRFADGDGGNRGRQSRVRR 154 AAAGFGDRFADGDGGNRGRQSRVRR Sbjct 121 AAAGFGDRFADGDGGNRGRQSRVRR 145 >gi|15827527|ref|NP_301790.1| hypothetical protein ML1077 [Mycobacterium leprae TN] gi|221230004|ref|YP_002503420.1| hypothetical protein MLBr_01077 [Mycobacterium leprae Br4923] gi|13093077|emb|CAC31458.1| conserved hypothetical protein [Mycobacterium leprae] gi|219933111|emb|CAR71172.1| conserved hypothetical protein [Mycobacterium leprae Br4923] Length=139 Score = 197 bits (502), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 101/142 (72%), Positives = 110/142 (78%), Gaps = 8/142 (5%) Query 8 GHVFRRAFSWLPAQFASQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAHLRAAHHL 67 G VFRR FSWLPAQFASQ+DAPVGAPR+F STEHLS+EAIAAFVDGELRMNAHLRAAHH+ Sbjct 6 GQVFRRVFSWLPAQFASQNDAPVGAPRRFGSTEHLSVEAIAAFVDGELRMNAHLRAAHHI 65 Query 68 SLCAQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEIPRCPPEGPSKGSSGGSSQGPP 127 SLCAQCAAEVDDQSR RAALRDSHPIRIPSTL GLL+ IPRC P+ S S S Sbjct 66 SLCAQCAAEVDDQSRTRAALRDSHPIRIPSTLFGLLTAIPRCSPDYTSPVSEPFSE---- 121 Query 128 DGAAAGFGDRFADGDGGNRGRQ 149 DRF DG +G++ Sbjct 122 ----GSVSDRFVDGVAREQGKR 139 >gi|296170126|ref|ZP_06851725.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895228|gb|EFG74941.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=132 Score = 196 bits (499), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 106/147 (73%), Positives = 112/147 (77%), Gaps = 20/147 (13%) Query 8 GHVFRRAFSWLPAQFASQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAHLRAAHHL 67 GHVFRRAFSWLPAQFASQSDAPVGAPRQF STEHLS+EAIAAFVDGELRMNAHLRAAHHL Sbjct 6 GHVFRRAFSWLPAQFASQSDAPVGAPRQFGSTEHLSVEAIAAFVDGELRMNAHLRAAHHL 65 Query 68 SLCAQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEIPRCPPEGPSKGSSGGSSQGPP 127 SLC QCAAEVDDQSRARAALRDSHPIRIPSTLLG+L+EIP P Sbjct 66 SLCPQCAAEVDDQSRARAALRDSHPIRIPSTLLGMLAEIP----------------YESP 109 Query 128 DGAAAGFGDRFADGDGGNRGRQSRVRR 154 D + +RFAD D R+ R RR Sbjct 110 DDSTPRASERFADPD----AREQRKRR 132 >gi|118619620|ref|YP_907952.1| hypothetical protein MUL_4518 [Mycobacterium ulcerans Agy99] gi|183984187|ref|YP_001852478.1| hypothetical protein MMAR_4215 [Mycobacterium marinum M] gi|118571730|gb|ABL06481.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] gi|183177513|gb|ACC42623.1| conserved hypothetical protein [Mycobacterium marinum M] Length=134 Score = 196 bits (498), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 95/113 (85%), Positives = 104/113 (93%), Gaps = 0/113 (0%) Query 8 GHVFRRAFSWLPAQFASQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAHLRAAHHL 67 GHVFRRAFSWLPAQFASQSDAPVGAPR+FRSTEHLSIEAIAAFVDGELRMNAHLRAAHHL Sbjct 5 GHVFRRAFSWLPAQFASQSDAPVGAPRRFRSTEHLSIEAIAAFVDGELRMNAHLRAAHHL 64 Query 68 SLCAQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEIPRCPPEGPSKGSSG 120 S+C QCAAEV+D +RARAALRDSHPIRIP+ LLG+LSEIP P EG + ++G Sbjct 65 SMCPQCAAEVEDHTRARAALRDSHPIRIPTALLGMLSEIPHHPSEGAPEDTTG 117 >gi|118463820|ref|YP_880609.1| RNA polymerase sigma-70 factor [Mycobacterium avium 104] gi|118165107|gb|ABK66004.1| RNA polymerase sigma-70 factor [Mycobacterium avium 104] Length=424 Score = 192 bits (487), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 94/107 (88%), Positives = 99/107 (93%), Gaps = 0/107 (0%) Query 8 GHVFRRAFSWLPAQFASQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAHLRAAHHL 67 GHVFRRAFSWLPAQFASQSDAPVGAPRQF STEHLS+EAIAAFVDGELRMNAHLRAAHHL Sbjct 303 GHVFRRAFSWLPAQFASQSDAPVGAPRQFGSTEHLSVEAIAAFVDGELRMNAHLRAAHHL 362 Query 68 SLCAQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEIPRCPPEGP 114 S CAQCAAEVDDQSRARAALRDS PIRIP+ LLG+L+EIP P+ P Sbjct 363 SQCAQCAAEVDDQSRARAALRDSRPIRIPANLLGMLAEIPYESPDAP 409 >gi|2062635|gb|AAC45220.1| unknown [Mycobacterium avium] Length=133 Score = 190 bits (483), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 94/107 (88%), Positives = 99/107 (93%), Gaps = 0/107 (0%) Query 8 GHVFRRAFSWLPAQFASQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAHLRAAHHL 67 GHVFRRAFSWLPAQFASQSDAPVGAPRQF STEHLS+EAIAAFVDGELRMNAHLRAAHHL Sbjct 12 GHVFRRAFSWLPAQFASQSDAPVGAPRQFGSTEHLSVEAIAAFVDGELRMNAHLRAAHHL 71 Query 68 SLCAQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEIPRCPPEGP 114 S CAQCAAEVDDQSRARAALRDS PIRIP+ LLG+L+EIP P+ P Sbjct 72 SQCAQCAAEVDDQSRARAALRDSRPIRIPANLLGMLAEIPYESPDAP 118 >gi|41408654|ref|NP_961490.1| hypothetical protein MAP2556c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397012|gb|AAS04873.1| hypothetical protein MAP_2556c [Mycobacterium avium subsp. paratuberculosis K-10] gi|336458557|gb|EGO37524.1| hypothetical protein MAPs_11470 [Mycobacterium avium subsp. paratuberculosis S397] Length=133 Score = 190 bits (482), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 94/107 (88%), Positives = 99/107 (93%), Gaps = 0/107 (0%) Query 8 GHVFRRAFSWLPAQFASQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAHLRAAHHL 67 GHVFRRAFSWLPAQFASQSDAPVGAPRQF STEHLS+EAIAAFVDGELRMNAHLRAAHHL Sbjct 12 GHVFRRAFSWLPAQFASQSDAPVGAPRQFGSTEHLSVEAIAAFVDGELRMNAHLRAAHHL 71 Query 68 SLCAQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEIPRCPPEGP 114 S CAQCAAEVDDQSRARAALRDS PIRIP+ LLG+L+EIP P+ P Sbjct 72 SQCAQCAAEVDDQSRARAALRDSRPIRIPANLLGMLAEIPYESPDTP 118 >gi|342862105|ref|ZP_08718748.1| RNA polymerase sigma-70 factor [Mycobacterium colombiense CECT 3035] gi|342130409|gb|EGT83724.1| RNA polymerase sigma-70 factor [Mycobacterium colombiense CECT 3035] Length=138 Score = 189 bits (481), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 95/112 (85%), Positives = 102/112 (92%), Gaps = 1/112 (0%) Query 8 GHVFRRAFSWLPAQFASQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAHLRAAHHL 67 GHVFRRAFSWLPAQFASQSDAPVGAPRQF STEHLS+EAIAAFVDGELRMNAHLRAAHHL Sbjct 12 GHVFRRAFSWLPAQFASQSDAPVGAPRQFGSTEHLSVEAIAAFVDGELRMNAHLRAAHHL 71 Query 68 SLCAQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEIP-RCPPEGPSKGS 118 SLCAQCA EV+DQSRARAALRDS PIRIPSTLLG+L++IP P + P+ S Sbjct 72 SLCAQCAGEVEDQSRARAALRDSRPIRIPSTLLGMLADIPYESPDDSPTHAS 123 >gi|240168998|ref|ZP_04747657.1| hypothetical protein MkanA1_06779 [Mycobacterium kansasii ATCC 12478] Length=130 Score = 189 bits (480), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 95/103 (93%), Positives = 96/103 (94%), Gaps = 0/103 (0%) Query 8 GHVFRRAFSWLPAQFASQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAHLRAAHHL 67 GHVFRRAFSWLP QFASQSDAPVGAPR+FRSTEHLSIEAIAAFVDGEL MNAHLRAAHHL Sbjct 5 GHVFRRAFSWLPTQFASQSDAPVGAPRRFRSTEHLSIEAIAAFVDGELTMNAHLRAAHHL 64 Query 68 SLCAQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEIPRCP 110 SLC QCAAEVDD SRARAALRDS PIRIPSTLLGLLSEIP P Sbjct 65 SLCPQCAAEVDDHSRARAALRDSRPIRIPSTLLGLLSEIPHQP 107 >gi|254822083|ref|ZP_05227084.1| RNA polymerase sigma-70 factor [Mycobacterium intracellulare ATCC 13950] Length=125 Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 90/98 (92%), Positives = 95/98 (97%), Gaps = 0/98 (0%) Query 10 VFRRAFSWLPAQFASQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAHLRAAHHLSL 69 +FRRAFSWLPAQFASQSDAPVGAPRQF STEHLS+EAIAAFVDGELRMNAHLRAAHHLS+ Sbjct 1 MFRRAFSWLPAQFASQSDAPVGAPRQFGSTEHLSVEAIAAFVDGELRMNAHLRAAHHLSM 60 Query 70 CAQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEIP 107 C QCAAEVDDQSR RAALRDSHPIRIPSTLLG+L+EIP Sbjct 61 CPQCAAEVDDQSRTRAALRDSHPIRIPSTLLGMLAEIP 98 >gi|254774243|ref|ZP_05215759.1| hypothetical protein MaviaA2_06180 [Mycobacterium avium subsp. avium ATCC 25291] Length=120 Score = 181 bits (459), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 90/105 (86%), Positives = 96/105 (92%), Gaps = 0/105 (0%) Query 10 VFRRAFSWLPAQFASQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAHLRAAHHLSL 69 +FRRAFSWLPAQFASQSDAPVGAPRQF STEHLS+EAIA FVDGELRMNAHLRAAHHLS Sbjct 1 MFRRAFSWLPAQFASQSDAPVGAPRQFGSTEHLSVEAIAPFVDGELRMNAHLRAAHHLSQ 60 Query 70 CAQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEIPRCPPEGP 114 CAQCAAEVDDQSRARAALRDS PIRIP+ LLG+L+EIP P+ P Sbjct 61 CAQCAAEVDDQSRARAALRDSRPIRIPANLLGMLAEIPYESPDTP 105 >gi|118470197|ref|YP_889321.1| hypothetical protein MSMEG_5071 [Mycobacterium smegmatis str. MC2 155] gi|118171484|gb|ABK72380.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=132 Score = 177 bits (450), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 90/112 (81%), Positives = 100/112 (90%), Gaps = 3/112 (2%) Query 1 MADPGSVGHVFRRAFSWLPAQFASQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAH 60 MADPG HVFRRAFSWLP+QFASQSDAPVGAPRQF STEHLS+EAIAAFVDGELRM+AH Sbjct 1 MADPG---HVFRRAFSWLPSQFASQSDAPVGAPRQFGSTEHLSVEAIAAFVDGELRMSAH 57 Query 61 LRAAHHLSLCAQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEIPRCPPE 112 LRAAHHLSLC +CAAEVD QS+AR ALR+S PI IP++LLG+LS+IP PE Sbjct 58 LRAAHHLSLCPECAAEVDAQSQARTALRESCPIAIPNSLLGMLSQIPHRTPE 109 >gi|2062638|gb|AAC45222.1| unknown [Mycobacterium smegmatis] Length=145 Score = 177 bits (449), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 90/112 (81%), Positives = 100/112 (90%), Gaps = 3/112 (2%) Query 1 MADPGSVGHVFRRAFSWLPAQFASQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAH 60 MADPG HVFRRAFSWLP+QFASQSDAPVGAPRQF STEHLS+EAIAAFVDGELRM+AH Sbjct 14 MADPG---HVFRRAFSWLPSQFASQSDAPVGAPRQFGSTEHLSVEAIAAFVDGELRMSAH 70 Query 61 LRAAHHLSLCAQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEIPRCPPE 112 LRAAHHLSLC +CAAEVD QS+AR ALR+S PI IP++LLG+LS+IP PE Sbjct 71 LRAAHHLSLCPECAAEVDAQSQARTALRESCPIAIPNSLLGMLSQIPHRTPE 122 >gi|108800957|ref|YP_641154.1| hypothetical protein Mmcs_3993 [Mycobacterium sp. MCS] gi|119870097|ref|YP_940049.1| hypothetical protein Mkms_4067 [Mycobacterium sp. KMS] gi|108771376|gb|ABG10098.1| conserved hypothetical protein [Mycobacterium sp. MCS] gi|119696186|gb|ABL93259.1| conserved hypothetical protein [Mycobacterium sp. KMS] Length=132 Score = 177 bits (449), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 89/116 (77%), Positives = 99/116 (86%), Gaps = 3/116 (2%) Query 1 MADPGSVGHVFRRAFSWLPAQFASQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAH 60 M DPG HVFRRAFSWLPAQFASQS+APVGAPRQF STEHLSIEA+AAFVDGEL M AH Sbjct 1 MVDPG---HVFRRAFSWLPAQFASQSNAPVGAPRQFGSTEHLSIEAVAAFVDGELSMTAH 57 Query 61 LRAAHHLSLCAQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEIPRCPPEGPSK 116 +RAA HLSLC QCAAEVD QS+AR+ALRDS PI IP+TLLG+LS+IP+ P P + Sbjct 58 MRAASHLSLCPQCAAEVDAQSQARSALRDSQPIAIPNTLLGMLSQIPQHMPHSPVE 113 >gi|126436582|ref|YP_001072273.1| hypothetical protein Mjls_4007 [Mycobacterium sp. JLS] gi|126236382|gb|ABN99782.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length=132 Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 87/111 (79%), Positives = 97/111 (88%), Gaps = 3/111 (2%) Query 1 MADPGSVGHVFRRAFSWLPAQFASQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAH 60 M DPG HVFRRAFSWLPAQFASQS+APVGAPRQF STEHLSIEA+AAFVDGEL M AH Sbjct 1 MVDPG---HVFRRAFSWLPAQFASQSNAPVGAPRQFGSTEHLSIEAVAAFVDGELSMTAH 57 Query 61 LRAAHHLSLCAQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEIPRCPP 111 +RAA+H+SLC QCAAEVD QS+AR ALRDS PI IP+TLLG+LS+IP+ P Sbjct 58 MRAANHMSLCLQCAAEVDAQSQARTALRDSQPIAIPNTLLGMLSQIPQHMP 108 >gi|333989836|ref|YP_004522450.1| hypothetical protein JDM601_1196 [Mycobacterium sp. JDM601] gi|333485804|gb|AEF35196.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=135 Score = 171 bits (432), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 84/99 (85%), Positives = 91/99 (92%), Gaps = 0/99 (0%) Query 8 GHVFRRAFSWLPAQFASQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAHLRAAHHL 67 G VFRRAFSWLP+QFASQSDAPVGAPRQF STEHL EA+AA+VDGELRMNAHLRAAHHL Sbjct 5 GGVFRRAFSWLPSQFASQSDAPVGAPRQFGSTEHLCSEAVAAYVDGELRMNAHLRAAHHL 64 Query 68 SLCAQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEI 106 SLC+ CAAEV+ Q RAR+ALRDSHPIRIPS LLGLLS+I Sbjct 65 SLCSDCAAEVEYQGRARSALRDSHPIRIPSALLGLLSQI 103 >gi|120405447|ref|YP_955276.1| hypothetical protein Mvan_4495 [Mycobacterium vanbaalenii PYR-1] gi|119958265|gb|ABM15270.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=132 Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 83/119 (70%), Positives = 94/119 (79%), Gaps = 2/119 (1%) Query 8 GHVFRRAFSWLPAQFASQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAHLRAAHHL 67 GH FRRAFSWLP+Q ASQSD PVG PRQF STEHLSIEA+AAFVDGELRM+AHLRAAHHL Sbjct 6 GHAFRRAFSWLPSQLASQSDDPVG-PRQFGSTEHLSIEAVAAFVDGELRMSAHLRAAHHL 64 Query 68 SLCAQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEIPR-CPPEGPSKGSSGGSSQG 125 SLC +CA EVD Q +AR ALR+S P+ +PS+LLGLLS+IP P E P S + G Sbjct 65 SLCPECALEVDAQRQAREALRESRPVAMPSSLLGLLSQIPNHTPVEAPEPADSPQLADG 123 >gi|315443257|ref|YP_004076136.1| hypothetical protein Mspyr1_16340 [Mycobacterium sp. Spyr1] gi|315261560|gb|ADT98301.1| hypothetical protein Mspyr1_16340 [Mycobacterium sp. Spyr1] Length=128 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 85/121 (71%), Positives = 92/121 (77%), Gaps = 6/121 (4%) Query 8 GHVFRRAFSWLPAQFASQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAHLRAAHHL 67 GH FRRAFSWLP SQSDAPVG PRQF STEHLS EAIAAF DGELRM AHLRAAHHL Sbjct 6 GHAFRRAFSWLP----SQSDAPVG-PRQFGSTEHLSTEAIAAFADGELRMTAHLRAAHHL 60 Query 68 SLCAQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEIP-RCPPEGPSKGSSGGSSQGP 126 SLCA+CA EVD Q +AR ALRDS P+ IPS+LLGLLS+IP R P + S + GP Sbjct 61 SLCAECAQEVDAQRQAREALRDSCPVDIPSSLLGLLSQIPNRTPLDAQEPSESPQLADGP 120 Query 127 P 127 P Sbjct 121 P 121 >gi|145222789|ref|YP_001133467.1| hypothetical protein Mflv_2201 [Mycobacterium gilvum PYR-GCK] gi|145215275|gb|ABP44679.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK] Length=133 Score = 150 bits (379), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 83/121 (69%), Positives = 92/121 (77%), Gaps = 6/121 (4%) Query 8 GHVFRRAFSWLPAQFASQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAHLRAAHHL 67 GH FRRAFSWLP SQSD+PVG PRQF STEHLS EAIAAF DGELRM AHLRAAHHL Sbjct 11 GHAFRRAFSWLP----SQSDSPVG-PRQFGSTEHLSTEAIAAFADGELRMTAHLRAAHHL 65 Query 68 SLCAQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEIP-RCPPEGPSKGSSGGSSQGP 126 SLC++CA EVD Q +AR ALRDS P+ IPS+LLGLLS+IP R P + S + GP Sbjct 66 SLCSECAQEVDAQRQAREALRDSCPVDIPSSLLGLLSQIPNRTPVDAQEPPESPQLADGP 125 Query 127 P 127 P Sbjct 126 P 126 >gi|169628454|ref|YP_001702103.1| hypothetical protein MAB_1363 [Mycobacterium abscessus ATCC 19977] gi|169240421|emb|CAM61449.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=147 Score = 141 bits (355), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 71/93 (77%), Positives = 80/93 (87%), Gaps = 0/93 (0%) Query 18 LPAQFASQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAHLRAAHHLSLCAQCAAEV 77 LP+ FASQS APVGAPRQF STEHLS EAIAAFVDGELRM+AHLRAAHHLS+CA+CA E+ Sbjct 20 LPSPFASQSGAPVGAPRQFGSTEHLSTEAIAAFVDGELRMSAHLRAAHHLSMCAECALEI 79 Query 78 DDQSRARAALRDSHPIRIPSTLLGLLSEIPRCP 110 D Q +AR ALRDS IR+P +LLGLLS+IP P Sbjct 80 DAQRQARTALRDSGAIRVPGSLLGLLSQIPHIP 112 >gi|226365447|ref|YP_002783230.1| hypothetical protein ROP_60380 [Rhodococcus opacus B4] gi|226243937|dbj|BAH54285.1| hypothetical protein [Rhodococcus opacus B4] Length=120 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 58/87 (67%), Positives = 68/87 (79%), Gaps = 0/87 (0%) Query 32 APRQFRSTEHLSIEAIAAFVDGELRMNAHLRAAHHLSLCAQCAAEVDDQSRARAALRDSH 91 PRQF STEHL+ EAIAAFVDGELRM+A+LRAAHHLS+CA+CA EVD Q +AR ALR S Sbjct 6 VPRQFGSTEHLASEAIAAFVDGELRMSAYLRAAHHLSICAECAFEVDSQQQARRALRRSG 65 Query 92 PIRIPSTLLGLLSEIPRCPPEGPSKGS 118 + +PS LLGLLS+IP C P+ S Sbjct 66 DVAMPSGLLGLLSQIPSCNQGDPADKS 92 >gi|111022941|ref|YP_705913.1| hypothetical protein RHA1_ro05978 [Rhodococcus jostii RHA1] gi|110822471|gb|ABG97755.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=120 Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 55/78 (71%), Positives = 65/78 (84%), Gaps = 0/78 (0%) Query 32 APRQFRSTEHLSIEAIAAFVDGELRMNAHLRAAHHLSLCAQCAAEVDDQSRARAALRDSH 91 PRQF STEHL+ EAIAA+VDGELRM+A+LRAAHHLS+CA+CA EVD Q +AR ALR S Sbjct 6 VPRQFGSTEHLASEAIAAYVDGELRMSAYLRAAHHLSICAECAFEVDSQQQARRALRRSG 65 Query 92 PIRIPSTLLGLLSEIPRC 109 + +PS LLGLLS+IP C Sbjct 66 DVAMPSGLLGLLSQIPSC 83 >gi|312138876|ref|YP_004006212.1| hypothetical protein REQ_14470 [Rhodococcus equi 103S] gi|325676419|ref|ZP_08156097.1| hypothetical protein HMPREF0724_13880 [Rhodococcus equi ATCC 33707] gi|311888215|emb|CBH47527.1| conserved hypothetical protein [Rhodococcus equi 103S] gi|325552597|gb|EGD22281.1| hypothetical protein HMPREF0724_13880 [Rhodococcus equi ATCC 33707] Length=125 Score = 107 bits (267), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 54/83 (66%), Positives = 67/83 (81%), Gaps = 1/83 (1%) Query 33 PRQFRSTEHLSIEAIAAFVDGELRMNAHLRAAHHLSLCAQCAAEVDDQSRARAALRD-SH 91 PRQF STEHL+ EAIA++VDGELRMNA+LRA+ HL+LC CAAEV+ Q +AR ALR + Sbjct 12 PRQFGSTEHLASEAIASYVDGELRMNAYLRASQHLALCPDCAAEVEAQQQARIALRRAAS 71 Query 92 PIRIPSTLLGLLSEIPRCPPEGP 114 + +PS+LLGLLS+IPRC P P Sbjct 72 EVSMPSSLLGLLSQIPRCHPAEP 94 >gi|226307644|ref|YP_002767604.1| hypothetical protein RER_41570 [Rhodococcus erythropolis PR4] gi|226186761|dbj|BAH34865.1| hypothetical protein RER_41570 [Rhodococcus erythropolis PR4] Length=127 Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 58/100 (58%), Positives = 74/100 (74%), Gaps = 2/100 (2%) Query 32 APRQFRSTEHLSIEAIAAFVDGELRMNAHLRAAHHLSLCAQCAAEVDDQSRARAALRDSH 91 A RQF STEHL+ EAIAA+VDGELRM A+LRA+HH+S+CA+CAA VD Q +AR ALR S Sbjct 14 AHRQFGSTEHLASEAIAAYVDGELRMQAYLRASHHISICAECAAAVDAQQQARGALRRSG 73 Query 92 PIRIPSTLLGLLSEIPRC--PPEGPSKGSSGGSSQGPPDG 129 + +P +L+GLLS+IP C P GP+ ++ GS P G Sbjct 74 EMTMPLSLVGLLSQIPSCNSPTTGPNSENADGSVGNQPAG 113 >gi|54026704|ref|YP_120946.1| hypothetical protein nfa47300 [Nocardia farcinica IFM 10152] gi|54018212|dbj|BAD59582.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=159 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 50/88 (57%), Positives = 63/88 (72%), Gaps = 0/88 (0%) Query 31 GAPRQFRSTEHLSIEAIAAFVDGELRMNAHLRAAHHLSLCAQCAAEVDDQSRARAALRDS 90 G P +F TEHL+ EA+ A+VDGELRMNA+LRAAHH+S+C +CAAEV+ Q +AR ALR S Sbjct 40 GRPPRFAPTEHLASEAVVAYVDGELRMNAYLRAAHHISVCPECAAEVEAQQQARIALRQS 99 Query 91 HPIRIPSTLLGLLSEIPRCPPEGPSKGS 118 PI +P +L LS IP GP + S Sbjct 100 GPIAVPRSLHDSLSRIPLAELPGPVENS 127 >gi|229493853|ref|ZP_04387626.1| RNA polymerase sigma-70 factor [Rhodococcus erythropolis SK121] gi|229319240|gb|EEN85088.1| RNA polymerase sigma-70 factor [Rhodococcus erythropolis SK121] Length=119 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 57/100 (57%), Positives = 73/100 (73%), Gaps = 2/100 (2%) Query 32 APRQFRSTEHLSIEAIAAFVDGELRMNAHLRAAHHLSLCAQCAAEVDDQSRARAALRDSH 91 A RQF STEHL+ EAIAA+VDGELRM A+LRA+HH+S+CA+CAA VD Q +AR ALR S Sbjct 6 AHRQFGSTEHLASEAIAAYVDGELRMQAYLRASHHISICAECAAAVDAQQQARGALRRSG 65 Query 92 PIRIPSTLLGLLSEIPRC--PPEGPSKGSSGGSSQGPPDG 129 + +P +L+GLLS+IP C P GP+ ++ S P G Sbjct 66 EMTMPLSLVGLLSQIPSCNSPTTGPNSENADSSVGNQPAG 105 >gi|296138796|ref|YP_003646039.1| hypothetical protein Tpau_1068 [Tsukamurella paurometabola DSM 20162] gi|296026930|gb|ADG77700.1| conserved hypothetical protein [Tsukamurella paurometabola DSM 20162] Length=129 Score = 97.1 bits (240), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 52/105 (50%), Positives = 66/105 (63%), Gaps = 16/105 (15%) Query 11 FRRAFSWLPAQFASQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAHLRAAHHLSLC 70 F+RAF+ P +F+S TEHL+ EA+ AFVDGELRMNAHLRA H++ C Sbjct 8 FKRAFARRPGEFSS--------------TEHLAFEAVVAFVDGELRMNAHLRAGTHIAQC 53 Query 71 AQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEIPR--CPPEG 113 CAAEVD Q + R LR+S I +P+ LLG L++IP C P G Sbjct 54 PMCAAEVDAQRQVRNTLRESGEISVPNRLLGQLAQIPTECCKPGG 98 >gi|343928011|ref|ZP_08767476.1| hypothetical protein GOALK_100_00150 [Gordonia alkanivorans NBRC 16433] gi|343762019|dbj|GAA14402.1| hypothetical protein GOALK_100_00150 [Gordonia alkanivorans NBRC 16433] Length=173 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 52/99 (53%), Positives = 67/99 (68%), Gaps = 5/99 (5%) Query 14 AFSWLPAQFASQSDAPVGAP-----RQFRSTEHLSIEAIAAFVDGELRMNAHLRAAHHLS 68 A SW PA + + AP R+F TEHL+ EA+AAFVDGEL M+AH RA+HHL+ Sbjct 31 ADSWTPAPSSFLPNRGYRAPGTAGGRRFAPTEHLAPEAVAAFVDGELGMSAHARASHHLA 90 Query 69 LCAQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEIP 107 LC +C A VD QS AR LR+S + +P++LLG LS+IP Sbjct 91 LCPECVAAVDAQSLARTRLRESGQVSVPASLLGALSQIP 129 >gi|333921003|ref|YP_004494584.1| hypothetical protein AS9A_3343 [Amycolicicoccus subflavus DQS3-9A1] gi|333483224|gb|AEF41784.1| hypothetical protein AS9A_3343 [Amycolicicoccus subflavus DQS3-9A1] Length=116 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 46/78 (59%), Positives = 60/78 (77%), Gaps = 2/78 (2%) Query 32 APRQ--FRSTEHLSIEAIAAFVDGELRMNAHLRAAHHLSLCAQCAAEVDDQSRARAALRD 89 APRQ FR+TEHL+ EAIAA+VDGEL M+A+LRA HLS+C +C +V Q +AR+ALR Sbjct 14 APRQRAFRATEHLAHEAIAAYVDGELPMSAYLRAGAHLSMCDECRDQVSAQIQARSALRQ 73 Query 90 SHPIRIPSTLLGLLSEIP 107 S P+ +P +LL LS+IP Sbjct 74 SGPVGVPESLLSALSQIP 91 >gi|296394493|ref|YP_003659377.1| hypothetical protein Srot_2091 [Segniliparus rotundus DSM 44985] gi|296181640|gb|ADG98546.1| hypothetical protein Srot_2091 [Segniliparus rotundus DSM 44985] Length=125 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 35/76 (47%), Positives = 50/76 (66%), Gaps = 0/76 (0%) Query 32 APRQFRSTEHLSIEAIAAFVDGELRMNAHLRAAHHLSLCAQCAAEVDDQSRARAALRDSH 91 AP+ F S +H+S EA+AA+ DG+L A RA H +C +C+ ++ Q +ARAALR S Sbjct 27 APKNFWSVDHISFEAVAAYADGKLGEKASARAREHFQMCPECSEQLQAQMQARAALRHSP 86 Query 92 PIRIPSTLLGLLSEIP 107 +++PS LLG L IP Sbjct 87 RVQVPSELLGTLCAIP 102 >gi|317508222|ref|ZP_07965902.1| agrin [Segniliparus rugosus ATCC BAA-974] gi|316253397|gb|EFV12787.1| agrin [Segniliparus rugosus ATCC BAA-974] Length=106 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 34/76 (45%), Positives = 50/76 (66%), Gaps = 0/76 (0%) Query 32 APRQFRSTEHLSIEAIAAFVDGELRMNAHLRAAHHLSLCAQCAAEVDDQSRARAALRDSH 91 AP+ F S +H+S EA+AA+ DG+L A +RA H C +C+ E+ Q +ARAALR + Sbjct 8 APKAFWSVDHVSFEAVAAYADGKLGEKASVRAREHFQACPECSDELQAQLQARAALRQAG 67 Query 92 PIRIPSTLLGLLSEIP 107 +++P+ LLG L IP Sbjct 68 CVQVPADLLGALCAIP 83 >gi|237785245|ref|YP_002905950.1| anti-sigma factor [Corynebacterium kroppenstedtii DSM 44385] gi|237758157|gb|ACR17407.1| anti-sigma factor [Corynebacterium kroppenstedtii DSM 44385] Length=184 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/113 (39%), Positives = 57/113 (51%), Gaps = 3/113 (2%) Query 33 PRQFRSTEHLSIEAIAAFVDGELRMNAHLRAAHHLSLCAQCAAEVDDQSRARAALRD--S 90 PRQF S EHLS EA+AAFVDGE+ A R HL C +C +V Q A +R+ + Sbjct 7 PRQFSSIEHLSEEAVAAFVDGEMPPRAQRRVLRHLVHCEECRRDVKAQRDAAQRMREAAN 66 Query 91 HPIRIPSTLLGLLSEIP-RCPPEGPSKGSSGGSSQGPPDGAAAGFGDRFADGD 142 P+ + + LL L+ IP C P+ PS + G A A G D D Sbjct 67 EPVHMSTELLHKLAAIPTNCDPQNPSGSPAKTEHHGQGKKAQATGGGHDTDSD 119 >gi|38233590|ref|NP_939357.1| hypothetical protein DIP0995 [Corynebacterium diphtheriae NCTC 13129] gi|38199850|emb|CAE49513.1| Conserved hypothetical protein [Corynebacterium diphtheriae] Length=137 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/103 (42%), Positives = 53/103 (52%), Gaps = 2/103 (1%) Query 28 APVGAPRQFRSTEHLSIEAIAAFVDGELRMNAHLRAAHHLSLCAQCAAEVDDQSRARAAL 87 +P R F S EHL+ EA+AAFVD EL A RA HL CA+C E+ Q RA L Sbjct 6 SPKNKVRHFASVEHLNPEAVAAFVDNELSPAAAHRAKIHLVHCAECREEIHRQRRAADRL 65 Query 88 RD--SHPIRIPSTLLGLLSEIPRCPPEGPSKGSSGGSSQGPPD 128 RD + +R S L+ L I C P+GP+ S Q D Sbjct 66 RDGNNSDMRPSSDLIAKLQSIAACCPDGPTAEEVPSSPQSLLD 108 >gi|227487902|ref|ZP_03918218.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51867] gi|227542541|ref|ZP_03972590.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51866] gi|227092108|gb|EEI27420.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51867] gi|227181739|gb|EEI62711.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51866] Length=125 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 36/85 (43%), Positives = 49/85 (58%), Gaps = 3/85 (3%) Query 36 FRSTEHLSIEAIAAFVDGELRMNAHLRAAHHLSLCAQCAAEVDDQSRARAALRDS--HPI 93 F S EHLS EA+A +VDGEL + A RA HL C+ C EV +Q A L+ + I Sbjct 13 FSSVEHLSAEAVAGYVDGELTLKAQKRARAHLLHCSICRKEVREQREASLTLKQETRNDI 72 Query 94 RIPSTLLGLLSEI-PRCPPEGPSKG 117 +PS+L+ L+ + P EGP+ G Sbjct 73 HVPSSLVAKLASMNPDTCEEGPAAG 97 >gi|325002582|ref|ZP_08123694.1| hypothetical protein PseP1_27637 [Pseudonocardia sp. P1] Length=84 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 32/67 (48%), Positives = 42/67 (63%), Gaps = 0/67 (0%) Query 41 HLSIEAIAAFVDGELRMNAHLRAAHHLSLCAQCAAEVDDQSRARAALRDSHPIRIPSTLL 100 HL++EA+ A+VD EL H RA HL C CAAEV +Q RAR+ALR + +P +L+ Sbjct 18 HLTLEAVVAYVDDELARGPHDRATRHLGHCPDCAAEVAEQRRARSALRGADAPTLPPSLM 77 Query 101 GLLSEIP 107 L IP Sbjct 78 SALRSIP 84 >gi|262201799|ref|YP_003273007.1| hypothetical protein Gbro_1858 [Gordonia bronchialis DSM 43247] gi|262085146|gb|ACY21114.1| hypothetical protein Gbro_1858 [Gordonia bronchialis DSM 43247] Length=91 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 28/51 (55%), Positives = 37/51 (73%), Gaps = 0/51 (0%) Query 57 MNAHLRAAHHLSLCAQCAAEVDDQSRARAALRDSHPIRIPSTLLGLLSEIP 107 M AH+RA HHL+LC +C A VD Q+ ARA LR+S + IP +LL L++IP Sbjct 1 MTAHMRATHHLALCPECVAAVDAQTSARARLRESGRVSIPDSLLSQLTQIP 51 >gi|300858210|ref|YP_003783193.1| anti-sigma factor [Corynebacterium pseudotuberculosis FRC41] gi|300685664|gb|ADK28586.1| anti-sigma factor [Corynebacterium pseudotuberculosis FRC41] gi|302205932|gb|ADL10274.1| Anti-sigma factor [Corynebacterium pseudotuberculosis C231] gi|302330488|gb|ADL20682.1| Anti-sigma factor [Corynebacterium pseudotuberculosis 1002] gi|308276167|gb|ADO26066.1| anti-sigma factor [Corynebacterium pseudotuberculosis I19] gi|341824602|gb|AEK92123.1| Anti-sigma factor [Corynebacterium pseudotuberculosis PAT10] Length=143 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/91 (46%), Positives = 49/91 (54%), Gaps = 2/91 (2%) Query 27 DAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAHLRAAHHLSLCAQCAAEVDDQSRARAA 86 ++ V R F S EHL+ EA+AA VD EL A RA HL C +C EVD Q RA Sbjct 7 NSKVEKNRHFASVEHLNPEAVAALVDDELSSVAAHRAKIHLVHCKECRDEVDRQRRAADR 66 Query 87 LRDS--HPIRIPSTLLGLLSEIPRCPPEGPS 115 LR S +R S LL L+ I PEGP+ Sbjct 67 LRGSSCSEMRASSDLLDKLNGIAHSCPEGPN 97 >gi|291453975|ref|ZP_06593365.1| conserved hypothetical protein [Streptomyces albus J1074] gi|291356924|gb|EFE83826.1| conserved hypothetical protein [Streptomyces albus J1074] Length=299 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/96 (40%), Positives = 51/96 (54%), Gaps = 2/96 (2%) Query 40 EHLSIEAIAAFVDGELRMNAHLRAAHHLSLCAQCAAEVDDQSRARAALRDSHPIRIPSTL 99 +HL + +AA VDGEL A R HL+ C +C AE D Q R ++ + P + Sbjct 11 QHLG-DRLAALVDGELGHEARERVLAHLATCCKCKAEADAQRRLKSVFATAAPPPPSESF 69 Query 100 LGLLSEIPRCPPEGPSKGSSGGSSQGPPDGAAAGFG 135 L L +P PEGP+ GS G GPP G++A FG Sbjct 70 LARLQGLPAAGPEGPT-GSGSGFGAGPPFGSSADFG 104 >gi|326382037|ref|ZP_08203730.1| hypothetical protein SCNU_03797 [Gordonia neofelifaecis NRRL B-59395] gi|326199463|gb|EGD56644.1| hypothetical protein SCNU_03797 [Gordonia neofelifaecis NRRL B-59395] Length=122 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/96 (41%), Positives = 55/96 (58%), Gaps = 1/96 (1%) Query 13 RAFSWLPAQFASQSDAPVGAPRQFRSTEHLSIEAIAAFVDGELRMNAHLRAAHHLSLCAQ 72 R WLPA + + P F ST+HL+ EA+ A+VD EL A RA HL++C Sbjct 10 RGSRWLPAASSITPNPGYRRPTGFASTQHLNPEAVVAYVDNELTAQAAARADAHLAMCPD 69 Query 73 CAAEVDDQSRARAALRD-SHPIRIPSTLLGLLSEIP 107 CA EV Q+RAR+ L+ + + +P +L LS+IP Sbjct 70 CAREVTAQARARSMLQTCQNDLSVPDSLRAQLSQIP 105 >gi|337290464|ref|YP_004629485.1| anti-sigma factor [Corynebacterium ulcerans BR-AD22] gi|334696577|gb|AEG81374.1| anti-sigma factor [Corynebacterium ulcerans 809] gi|334698770|gb|AEG83566.1| anti-sigma factor [Corynebacterium ulcerans BR-AD22] Length=143 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/88 (47%), Positives = 46/88 (53%), Gaps = 2/88 (2%) Query 30 VGAPRQFRSTEHLSIEAIAAFVDGELRMNAHLRAAHHLSLCAQCAAEVDDQSRARAALRD 89 V R F S EHL+ EA+AA VD EL A RA HL C +C EVD Q RA LR Sbjct 10 VEKIRHFASVEHLNPEAVAALVDDELSSVAAHRAKIHLVHCKECRDEVDRQRRAADRLRG 69 Query 90 S--HPIRIPSTLLGLLSEIPRCPPEGPS 115 S +R S LL L I PEGP+ Sbjct 70 STHSEMRASSDLLAKLQGIAHSCPEGPN 97 >gi|258652368|ref|YP_003201524.1| hypothetical protein Namu_2157 [Nakamurella multipartita DSM 44233] gi|258555593|gb|ACV78535.1| hypothetical protein Namu_2157 [Nakamurella multipartita DSM 44233] Length=176 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/69 (43%), Positives = 45/69 (66%), Gaps = 0/69 (0%) Query 38 STEHLSIEAIAAFVDGELRMNAHLRAAHHLSLCAQCAAEVDDQSRARAALRDSHPIRIPS 97 S +HL+++A+ A+ DGE+ + A+ RAA H++ C QC AEV Q AR+ LR + +P+ Sbjct 5 SVDHLTLDAVVAYADGEMPLVAYQRAAAHVARCPQCDAEVRAQLVARSWLRSAETPAMPT 64 Query 98 TLLGLLSEI 106 +LL L I Sbjct 65 SLLDTLRSI 73 >gi|227548419|ref|ZP_03978468.1| conserved hypothetical protein [Corynebacterium lipophiloflavum DSM 44291] gi|227079463|gb|EEI17426.1| conserved hypothetical protein [Corynebacterium lipophiloflavum DSM 44291] Length=124 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/82 (47%), Positives = 50/82 (61%), Gaps = 6/82 (7%) Query 32 APRQ---FRSTEHLSIEAIAAFVDGELRMNAHLRAAHHLSLCAQCAAEVDDQSRARAALR 88 APR+ F STEHLS EA+AAF D EL +A RA H+ LC +C AEV+ Q A LR Sbjct 9 APRKKKGFFSTEHLSPEAVAAFADQELSESALHRARVHVVLCEECRAEVNHQRAAAEHLR 68 Query 89 DSH---PIRIPSTLLGLLSEIP 107 + +R P +L+ L+E+P Sbjct 69 CCNADDSVRAPRSLVQKLAEMP 90 >gi|331694894|ref|YP_004331133.1| hypothetical protein Psed_1029 [Pseudonocardia dioxanivorans CB1190] gi|326949583|gb|AEA23280.1| hypothetical protein Psed_1029 [Pseudonocardia dioxanivorans CB1190] Length=236 Score = 57.4 bits (137), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 31/79 (40%), Positives = 45/79 (57%), Gaps = 6/79 (7%) Query 41 HLSIEAIAAFVDGELRMNAHLRAAHHLSLCAQCAAEVDDQSRARAALRDSHPIRIP---- 96 HL+++AI AF DGEL AH RA HL+ C +CA EV +Q +AR LR + +P Sbjct 19 HLTLDAIVAFTDGELSAGAHARATAHLAHCPECAEEVVEQDQARLLLRSASAPAMPSSLL 78 Query 97 --STLLGLLSEIPRCPPEG 113 + + +++P PP G Sbjct 79 SSLRSIPMDADLPDEPPAG 97 Lambda K H 0.318 0.134 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 131222683000 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40