BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1227c
Length=177
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608367|ref|NP_215743.1| hypothetical protein Rv1227c [Mycob... 347 3e-94
gi|340626240|ref|YP_004744692.1| putative transmembrane protein ... 346 9e-94
gi|253799729|ref|YP_003032730.1| hypothetical protein TBMG_02755... 345 1e-93
gi|289757325|ref|ZP_06516703.1| conserved hypothetical protein [... 334 2e-90
gi|339294214|gb|AEJ46325.1| hypothetical protein CCDC5079_1135 [... 283 7e-75
gi|108797577|ref|YP_637774.1| membrane-flanked domain-containing... 209 1e-52
gi|315442292|ref|YP_004075171.1| hypothetical protein Mspyr1_063... 205 2e-51
gi|145220755|ref|YP_001131433.1| membrane-flanked domain-contain... 204 3e-51
gi|120401769|ref|YP_951598.1| hypothetical protein Mvan_0754 [My... 204 6e-51
gi|118469019|ref|YP_885267.1| membrane flanked domain-containing... 199 1e-49
gi|333921028|ref|YP_004494609.1| hypothetical protein AS9A_3368 ... 192 1e-47
gi|333989063|ref|YP_004521677.1| membrane-flanked domain-contain... 192 2e-47
gi|229493873|ref|ZP_04387645.1| bacterial membrane flanked domai... 178 2e-43
gi|312138846|ref|YP_004006182.1| integral membrane protein [Rhod... 177 4e-43
gi|226307672|ref|YP_002767632.1| hypothetical protein RER_41850 ... 177 5e-43
gi|226365413|ref|YP_002783196.1| hypothetical protein ROP_60040 ... 177 6e-43
gi|325676452|ref|ZP_08156130.1| membrane protein [Rhodococcus eq... 177 7e-43
gi|111022906|ref|YP_705878.1| hypothetical protein RHA1_ro05943 ... 168 3e-40
gi|54026727|ref|YP_120969.1| hypothetical protein nfa47530 [Noca... 155 2e-36
gi|296268839|ref|YP_003651471.1| hypothetical protein Tbis_0854 ... 139 2e-31
gi|291302521|ref|YP_003513799.1| hypothetical protein Snas_5070 ... 133 1e-29
gi|256375206|ref|YP_003098866.1| membrane-flanked domain-contain... 132 2e-29
gi|302529900|ref|ZP_07282242.1| membrane-flanked domain-containi... 132 2e-29
gi|317126481|ref|YP_004100593.1| membrane-flanked domain [Intras... 129 2e-28
gi|262203456|ref|YP_003274664.1| membrane-flanked domain-contain... 129 2e-28
gi|284044287|ref|YP_003394627.1| membrane-flanked domain protein... 127 6e-28
gi|300789663|ref|YP_003769954.1| hypothetical protein AMED_7845 ... 125 2e-27
gi|258653930|ref|YP_003203086.1| membrane-flanked domain-contain... 124 7e-27
gi|297561205|ref|YP_003680179.1| membrane-flanked domain-contain... 122 1e-26
gi|119717733|ref|YP_924698.1| membrane-flanked domain-containing... 121 4e-26
gi|256826117|ref|YP_003150077.1| hypothetical protein Ksed_23370... 121 5e-26
gi|302545308|ref|ZP_07297650.1| membrane-flanked domain protein ... 119 2e-25
gi|324998650|ref|ZP_08119762.1| membrane-flanked domain-containi... 119 2e-25
gi|296139055|ref|YP_003646298.1| membrane-flanked domain-contain... 118 4e-25
gi|254385614|ref|ZP_05000938.1| membrane-flanked domain containi... 117 9e-25
gi|345015254|ref|YP_004817608.1| hypothetical protein Strvi_8005... 116 1e-24
gi|291300311|ref|YP_003511589.1| hypothetical protein Snas_2820 ... 113 9e-24
gi|62737764|gb|AAX98181.1| putative membrane protein [Streptomyc... 112 2e-23
gi|269956867|ref|YP_003326656.1| membrane-flanked domain-contain... 112 2e-23
gi|344998967|ref|YP_004801821.1| membrane-flanked domain-contain... 112 3e-23
gi|343927649|ref|ZP_08767117.1| hypothetical protein GOALK_097_0... 110 8e-23
gi|326331001|ref|ZP_08197300.1| bacterial membrane flanked domai... 110 1e-22
gi|134097812|ref|YP_001103473.1| membrane-flanked domain-contain... 107 6e-22
gi|320011436|gb|ADW06286.1| membrane-flanked domain protein [Str... 107 8e-22
gi|297195054|ref|ZP_06912452.1| membrane-flanked domain-containi... 106 1e-21
gi|269125928|ref|YP_003299298.1| hypothetical protein Tcur_1685 ... 106 2e-21
gi|257055484|ref|YP_003133316.1| hypothetical protein Svir_14490... 105 3e-21
gi|271962360|ref|YP_003336556.1| hypothetical protein Sros_0799 ... 105 4e-21
gi|239986882|ref|ZP_04707546.1| hypothetical protein SrosN1_0621... 105 4e-21
gi|294811977|ref|ZP_06770620.1| Membrane-flanked domain-containi... 101 4e-20
>gi|15608367|ref|NP_215743.1| hypothetical protein Rv1227c [Mycobacterium tuberculosis H37Rv]
gi|31792420|ref|NP_854913.1| hypothetical protein Mb1259c [Mycobacterium bovis AF2122/97]
gi|121637156|ref|YP_977379.1| putative transmembrane protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
38 more sequence titles
Length=177
Score = 347 bits (891), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 176/177 (99%), Positives = 177/177 (100%), Gaps = 0/177 (0%)
Query 1 LDHARNVPSATGPQRNHLALAEPAHRPSSQAPVMWALSASLGWILPVIAQLVWWAVHPQP 60
+DHARNVPSATGPQRNHLALAEPAHRPSSQAPVMWALSASLGWILPVIAQLVWWAVHPQP
Sbjct 1 MDHARNVPSATGPQRNHLALAEPAHRPSSQAPVMWALSASLGWILPVIAQLVWWAVHPQP 60
Query 61 PWPHLAAAALTAVAMVVHIGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQT 120
PWPHLAAAALTAVAMVVHIGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQT
Sbjct 61 PWPHLAAAALTAVAMVVHIGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQT 120
Query 121 VDTYRGPMDRLFGLANVTVTTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
VDTYRGPMDRLFGLANVTVTTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT
Sbjct 121 VDTYRGPMDRLFGLANVTVTTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
>gi|340626240|ref|YP_004744692.1| putative transmembrane protein [Mycobacterium canettii CIPT 140010059]
gi|340004430|emb|CCC43573.1| putative transmembrane protein [Mycobacterium canettii CIPT 140010059]
Length=177
Score = 346 bits (887), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 175/177 (99%), Positives = 176/177 (99%), Gaps = 0/177 (0%)
Query 1 LDHARNVPSATGPQRNHLALAEPAHRPSSQAPVMWALSASLGWILPVIAQLVWWAVHPQP 60
+DHARNVPSATGPQRNHLALAEPAHRPSSQAPVMWALSASLGWILPVIAQLVWWAVHPQP
Sbjct 1 MDHARNVPSATGPQRNHLALAEPAHRPSSQAPVMWALSASLGWILPVIAQLVWWAVHPQP 60
Query 61 PWPHLAAAALTAVAMVVHIGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQT 120
PWPHLAAAALTAVAMVVHIGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRI PISRVQT
Sbjct 61 PWPHLAAAALTAVAMVVHIGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRIAPISRVQT 120
Query 121 VDTYRGPMDRLFGLANVTVTTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
VDTYRGPMDRLFGLANVTVTTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT
Sbjct 121 VDTYRGPMDRLFGLANVTVTTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
>gi|253799729|ref|YP_003032730.1| hypothetical protein TBMG_02755 [Mycobacterium tuberculosis KZN
1435]
gi|289554985|ref|ZP_06444195.1| transmembrane protein [Mycobacterium tuberculosis KZN 605]
gi|297633774|ref|ZP_06951554.1| hypothetical protein MtubK4_06614 [Mycobacterium tuberculosis
KZN 4207]
gi|297730760|ref|ZP_06959878.1| hypothetical protein MtubKR_06699 [Mycobacterium tuberculosis
KZN R506]
gi|313658091|ref|ZP_07814971.1| hypothetical protein MtubKV_06709 [Mycobacterium tuberculosis
KZN V2475]
gi|253321232|gb|ACT25835.1| transmembrane protein [Mycobacterium tuberculosis KZN 1435]
gi|289439617|gb|EFD22110.1| transmembrane protein [Mycobacterium tuberculosis KZN 605]
gi|328459475|gb|AEB04898.1| transmembrane protein [Mycobacterium tuberculosis KZN 4207]
Length=177
Score = 345 bits (886), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 175/177 (99%), Positives = 177/177 (100%), Gaps = 0/177 (0%)
Query 1 LDHARNVPSATGPQRNHLALAEPAHRPSSQAPVMWALSASLGWILPVIAQLVWWAVHPQP 60
+DHARNVPSATGPQRNHLALAEPAHRPSS+APVMWALSASLGWILPVIAQLVWWAVHPQP
Sbjct 1 MDHARNVPSATGPQRNHLALAEPAHRPSSRAPVMWALSASLGWILPVIAQLVWWAVHPQP 60
Query 61 PWPHLAAAALTAVAMVVHIGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQT 120
PWPHLAAAALTAVAMVVHIGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQT
Sbjct 61 PWPHLAAAALTAVAMVVHIGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQT 120
Query 121 VDTYRGPMDRLFGLANVTVTTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
VDTYRGPMDRLFGLANVTVTTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT
Sbjct 121 VDTYRGPMDRLFGLANVTVTTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
>gi|289757325|ref|ZP_06516703.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|308231785|ref|ZP_07663931.1| bacterial membrane flanked domain protein [Mycobacterium tuberculosis
SUMu001]
gi|308370020|ref|ZP_07420031.2| transmembrane protein [Mycobacterium tuberculosis SUMu002]
22 more sequence titles
Length=171
Score = 334 bits (857), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 170/171 (99%), Positives = 171/171 (100%), Gaps = 0/171 (0%)
Query 7 VPSATGPQRNHLALAEPAHRPSSQAPVMWALSASLGWILPVIAQLVWWAVHPQPPWPHLA 66
+PSATGPQRNHLALAEPAHRPSSQAPVMWALSASLGWILPVIAQLVWWAVHPQPPWPHLA
Sbjct 1 MPSATGPQRNHLALAEPAHRPSSQAPVMWALSASLGWILPVIAQLVWWAVHPQPPWPHLA 60
Query 67 AAALTAVAMVVHIGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQTVDTYRG 126
AAALTAVAMVVHIGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQTVDTYRG
Sbjct 61 AAALTAVAMVVHIGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQTVDTYRG 120
Query 127 PMDRLFGLANVTVTTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
PMDRLFGLANVTVTTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT
Sbjct 121 PMDRLFGLANVTVTTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 171
>gi|339294214|gb|AEJ46325.1| hypothetical protein CCDC5079_1135 [Mycobacterium tuberculosis
CCDC5079]
gi|339297854|gb|AEJ49964.1| hypothetical protein CCDC5180_1127 [Mycobacterium tuberculosis
CCDC5180]
Length=144
Score = 283 bits (724), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 144/144 (100%), Positives = 144/144 (100%), Gaps = 0/144 (0%)
Query 34 MWALSASLGWILPVIAQLVWWAVHPQPPWPHLAAAALTAVAMVVHIGVVPLWRYRVHRWE 93
MWALSASLGWILPVIAQLVWWAVHPQPPWPHLAAAALTAVAMVVHIGVVPLWRYRVHRWE
Sbjct 1 MWALSASLGWILPVIAQLVWWAVHPQPPWPHLAAAALTAVAMVVHIGVVPLWRYRVHRWE 60
Query 94 ISPQAVFTRTGWLVQERRITPISRVQTVDTYRGPMDRLFGLANVTVTTASSAGAVHIEAL 153
ISPQAVFTRTGWLVQERRITPISRVQTVDTYRGPMDRLFGLANVTVTTASSAGAVHIEAL
Sbjct 61 ISPQAVFTRTGWLVQERRITPISRVQTVDTYRGPMDRLFGLANVTVTTASSAGAVHIEAL 120
Query 154 DTDVADRVVAQLTDIAALRGEDAT 177
DTDVADRVVAQLTDIAALRGEDAT
Sbjct 121 DTDVADRVVAQLTDIAALRGEDAT 144
>gi|108797577|ref|YP_637774.1| membrane-flanked domain-containing protein [Mycobacterium sp.
MCS]
gi|119866664|ref|YP_936616.1| membrane-flanked domain-containing protein [Mycobacterium sp.
KMS]
gi|126433200|ref|YP_001068891.1| membrane-flanked domain-containing protein [Mycobacterium sp.
JLS]
gi|108767996|gb|ABG06718.1| membrane-flanked domain protein [Mycobacterium sp. MCS]
gi|119692753|gb|ABL89826.1| membrane-flanked domain [Mycobacterium sp. KMS]
gi|126233000|gb|ABN96400.1| membrane-flanked domain [Mycobacterium sp. JLS]
Length=165
Score = 209 bits (532), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 104/160 (65%), Positives = 129/160 (81%), Gaps = 0/160 (0%)
Query 18 LALAEPAHRPSSQAPVMWALSASLGWILPVIAQLVWWAVHPQPPWPHLAAAALTAVAMVV 77
L LA+P HRPS++AP++WA SA+L W++ V+AQ+ WW P W H AAA T + +V+
Sbjct 6 LVLADPEHRPSAKAPLLWAASAALPWLVLVVAQVAWWVTDPASGWLHAVAAAGTVLGIVL 65
Query 78 HIGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQTVDTYRGPMDRLFGLANV 137
+GVVP+WRYRVHRW + +AV+TRTGWL QERRI PISRVQTVDT RGP+DR+FGL++V
Sbjct 66 FVGVVPVWRYRVHRWAVDARAVYTRTGWLTQERRIAPISRVQTVDTQRGPLDRMFGLSSV 125
Query 138 TVTTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
TVTTASSAGAV I ALD VA+R+VAQLTDIAAL +DAT
Sbjct 126 TVTTASSAGAVRIVALDAPVAERIVAQLTDIAALGEQDAT 165
>gi|315442292|ref|YP_004075171.1| hypothetical protein Mspyr1_06310 [Mycobacterium sp. Spyr1]
gi|315260595|gb|ADT97336.1| uncharacterized conserved protein [Mycobacterium sp. Spyr1]
Length=160
Score = 205 bits (522), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 109/158 (69%), Positives = 129/158 (82%), Gaps = 0/158 (0%)
Query 20 LAEPAHRPSSQAPVMWALSASLGWILPVIAQLVWWAVHPQPPWPHLAAAALTAVAMVVHI 79
LA+PAH PS +AP++WAL A++ W + ++AQ++W+ + PW H+ AA T V + V +
Sbjct 3 LADPAHPPSRKAPLVWALGAAVPWSIAIVAQVLWFLFDGRLPWLHILAALGTVVGVTVSV 62
Query 80 GVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQTVDTYRGPMDRLFGLANVTV 139
V PLWRYRVHRWE+ P AV+TR+GWLVQERRI PISRVQTVDTYRGP+DRLFGLANVTV
Sbjct 63 VVAPLWRYRVHRWEVDPTAVYTRSGWLVQERRIAPISRVQTVDTYRGPLDRLFGLANVTV 122
Query 140 TTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
TTASSAGAV I ALD DVADRVVAQLTDIAAL EDAT
Sbjct 123 TTASSAGAVRIVALDLDVADRVVAQLTDIAALGQEDAT 160
>gi|145220755|ref|YP_001131433.1| membrane-flanked domain-containing protein [Mycobacterium gilvum
PYR-GCK]
gi|145213241|gb|ABP42645.1| membrane-flanked domain [Mycobacterium gilvum PYR-GCK]
Length=160
Score = 204 bits (520), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 109/158 (69%), Positives = 128/158 (82%), Gaps = 0/158 (0%)
Query 20 LAEPAHRPSSQAPVMWALSASLGWILPVIAQLVWWAVHPQPPWPHLAAAALTAVAMVVHI 79
LA+PAH PS +AP++WAL A+ W + ++AQ++W+ + PW H+ AA T V + V +
Sbjct 3 LADPAHPPSRKAPLVWALGAAAPWSIAIVAQVLWFLFDGRLPWLHILAALGTVVGVTVSV 62
Query 80 GVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQTVDTYRGPMDRLFGLANVTV 139
V PLWRYRVHRWE+ P AV+TR+GWLVQERRI PISRVQTVDTYRGP+DRLFGLANVTV
Sbjct 63 VVAPLWRYRVHRWEVDPTAVYTRSGWLVQERRIAPISRVQTVDTYRGPLDRLFGLANVTV 122
Query 140 TTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
TTASSAGAV I ALD DVADRVVAQLTDIAAL EDAT
Sbjct 123 TTASSAGAVRIVALDLDVADRVVAQLTDIAALGQEDAT 160
>gi|120401769|ref|YP_951598.1| hypothetical protein Mvan_0754 [Mycobacterium vanbaalenii PYR-1]
gi|119954587|gb|ABM11592.1| membrane-flanked domain [Mycobacterium vanbaalenii PYR-1]
Length=160
Score = 204 bits (518), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 109/158 (69%), Positives = 127/158 (81%), Gaps = 0/158 (0%)
Query 20 LAEPAHRPSSQAPVMWALSASLGWILPVIAQLVWWAVHPQPPWPHLAAAALTAVAMVVHI 79
LAEPA+ PS +AP++WA+ A++ W+ V AQ VW+ V + PW H+ AA T V VV +
Sbjct 3 LAEPAYPPSRKAPLVWAIGAAIPWMFAVAAQAVWFMVDGRVPWLHMLVAAGTVVGAVVSV 62
Query 80 GVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQTVDTYRGPMDRLFGLANVTV 139
V PLWRYRVHRW++ AV+TR+GWLVQERRI PISRVQTVDTYRGP+DRLFGLANVTV
Sbjct 63 VVAPLWRYRVHRWDLDATAVYTRSGWLVQERRIAPISRVQTVDTYRGPLDRLFGLANVTV 122
Query 140 TTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
TTASSAGAV I ALD DVADRVVA+LTDIAAL EDAT
Sbjct 123 TTASSAGAVRIVALDVDVADRVVARLTDIAALGAEDAT 160
>gi|118469019|ref|YP_885267.1| membrane flanked domain-containing protein [Mycobacterium smegmatis
str. MC2 155]
gi|118170306|gb|ABK71202.1| bacterial membrane flanked domain family protein [Mycobacterium
smegmatis str. MC2 155]
Length=179
Score = 199 bits (506), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 107/177 (61%), Positives = 128/177 (73%), Gaps = 4/177 (2%)
Query 5 RNVPSATGPQRNHLALAEPAHRPSSQAPVMWALSASLGWILPVIAQLVWWAVHPQPPWPH 64
R +G + L L +P++ PS +AP+ WA+ A++ W + V QLVW + W H
Sbjct 3 REGEEYSGSTASGLVLLDPSNPPSRKAPLAWAMGAAIPWSMLVFGQLVWLLFDRRMLWLH 62
Query 65 LAAAALTAVAMVVHIGVVPLWRYRVHRWEISPQ----AVFTRTGWLVQERRITPISRVQT 120
AA TA +V+ + +VPLWRYRVHRW+IS AV+TRTGWLVQERRI PISRVQT
Sbjct 63 GLAAVATAAGIVLFVVIVPLWRYRVHRWDISVDTATPAVYTRTGWLVQERRIAPISRVQT 122
Query 121 VDTYRGPMDRLFGLANVTVTTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
VDTYRGP+DRLFGLANVTVTTASSAGAV I ALD DVADRVVA LTDIAA+ +DAT
Sbjct 123 VDTYRGPLDRLFGLANVTVTTASSAGAVRIVALDVDVADRVVALLTDIAAIGEQDAT 179
>gi|333921028|ref|YP_004494609.1| hypothetical protein AS9A_3368 [Amycolicicoccus subflavus DQS3-9A1]
gi|333483249|gb|AEF41809.1| Bacterial membrane flanked domain protein [Amycolicicoccus subflavus
DQS3-9A1]
Length=169
Score = 192 bits (489), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 100/165 (61%), Positives = 121/165 (74%), Gaps = 1/165 (0%)
Query 14 QRNHLALAEPAHRPSSQAPVMWALSASLGWILPVIAQLVWWAVHPQP-PWPHLAAAALTA 72
Q+ + +A+PA RPS +AP++WA +A+LGW+ +IAQ +W P WPH+AA T
Sbjct 5 QQGSVRMADPAWRPSKKAPLLWAFNAALGWVFVLIAQFIWALADSDPTSWPHIAALTATL 64
Query 73 VAMVVHIGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQTVDTYRGPMDRLF 132
V +HI VP+WRY VHRWEIS +AV+TR GW VQERRI PISRVQTVDT RGP+DRL
Sbjct 65 VLAPMHIIGVPIWRYHVHRWEISDEAVYTRQGWFVQERRIAPISRVQTVDTTRGPIDRLL 124
Query 133 GLANVTVTTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
GLA VTVTTASSAGAV I ALD ++ADR V LT+IAA DAT
Sbjct 125 GLATVTVTTASSAGAVTITALDEEIADRTVRDLTEIAARTRGDAT 169
>gi|333989063|ref|YP_004521677.1| membrane-flanked domain-containing protein [Mycobacterium sp.
JDM601]
gi|333485031|gb|AEF34423.1| membrane-flanked domain-containing protein [Mycobacterium sp.
JDM601]
Length=161
Score = 192 bits (487), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 105/160 (66%), Positives = 125/160 (79%), Gaps = 0/160 (0%)
Query 18 LALAEPAHRPSSQAPVMWALSASLGWILPVIAQLVWWAVHPQPPWPHLAAAALTAVAMVV 77
+ L +PA+ PSS+AP++WAL ++ W++ + QL W + W H AA A+T + ++V
Sbjct 2 ITLVDPANPPSSRAPLVWALVGAVPWLVLAVLQLGWAVADERLAWLHAAAWAVTVLGLLV 61
Query 78 HIGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQTVDTYRGPMDRLFGLANV 137
GV PLWRYRVHRW+IS QAV+TRTGWLVQERRI PISR+QTVDTYRGP+DRL GLANV
Sbjct 62 SAGVAPLWRYRVHRWDISDQAVYTRTGWLVQERRIAPISRIQTVDTYRGPLDRLLGLANV 121
Query 138 TVTTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
VTTASSAGAVHI ALD VADRVVAQLTDIAAL DAT
Sbjct 122 RVTTASSAGAVHIVALDAPVADRVVAQLTDIAALGAGDAT 161
>gi|229493873|ref|ZP_04387645.1| bacterial membrane flanked domain protein [Rhodococcus erythropolis
SK121]
gi|229319150|gb|EEN84999.1| bacterial membrane flanked domain protein [Rhodococcus erythropolis
SK121]
Length=169
Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/168 (59%), Positives = 120/168 (72%), Gaps = 3/168 (1%)
Query 11 TGPQRNHLALAEPAHRPSSQAPVMWALSASLGWILPVIAQLVWWAVHPQ-PPWPHLAAAA 69
T PQ L +A+P RPS++AP +WA++ASL W+ ++A++V + P P W A
Sbjct 4 TAPQ--PLTMADPLWRPSTKAPRLWAITASLFWVPVIVAEIVCAVLIPGIPSWVVGTVFA 61
Query 70 LTAVAMVVHIGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQTVDTYRGPMD 129
+T + +I +VP WRYRVHRWEIS AV+TRTGW QERRI PISRVQTVDT RGP+D
Sbjct 62 VTVLFAATYILMVPAWRYRVHRWEISDTAVYTRTGWFTQERRIAPISRVQTVDTERGPID 121
Query 130 RLFGLANVTVTTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
R+ GLA VTVTTASSAGAV I ALD +VADR VAQLT+IA DAT
Sbjct 122 RMLGLATVTVTTASSAGAVKISALDQEVADRTVAQLTEIAGTNVGDAT 169
>gi|312138846|ref|YP_004006182.1| integral membrane protein [Rhodococcus equi 103S]
gi|311888185|emb|CBH47497.1| putative integral membrane protein [Rhodococcus equi 103S]
Length=161
Score = 177 bits (450), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 102/162 (63%), Positives = 116/162 (72%), Gaps = 3/162 (1%)
Query 18 LALAEPAHRPSSQAPVMWALSASLGWILPVIAQLVWWAVHPQ--PPWPHLAAAALTAVAM 75
+ +A+PA RPS++AP +WA +A+L W LPV A V WAV WPH+ A+T
Sbjct 1 MTMADPAWRPSTKAPALWATTATLVW-LPVFAAQVVWAVLDGRWTTWPHVTVFAVTLAVA 59
Query 76 VVHIGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQTVDTYRGPMDRLFGLA 135
V I VVP WRYRVHRWEIS AV+TRTGW QERRI PI+R+QTVDT RGP+DRLFGLA
Sbjct 60 VADIVVVPRWRYRVHRWEISDDAVYTRTGWFDQERRIAPITRIQTVDTERGPLDRLFGLA 119
Query 136 NVTVTTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
VTVTTASSAGAV I ALD DVADR V QLT I A DAT
Sbjct 120 TVTVTTASSAGAVKITALDLDVADRTVEQLTAITARNAGDAT 161
>gi|226307672|ref|YP_002767632.1| hypothetical protein RER_41850 [Rhodococcus erythropolis PR4]
gi|226186789|dbj|BAH34893.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length=169
Score = 177 bits (449), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 97/168 (58%), Positives = 120/168 (72%), Gaps = 3/168 (1%)
Query 11 TGPQRNHLALAEPAHRPSSQAPVMWALSASLGWILPVIAQLVWWAVHPQ-PPWPHLAAAA 69
T PQ L +A+P RPS++AP +WA++ASL W+ ++A++V + P P W A
Sbjct 4 TAPQ--PLTMADPLWRPSAKAPRLWAITASLFWVPVIVAEIVCAVLIPGIPSWVVGLVFA 61
Query 70 LTAVAMVVHIGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQTVDTYRGPMD 129
+T + +I +VP WRYRVHRWEIS AV+TRTGW QERRI PISRVQTVDT RGP+D
Sbjct 62 VTVLFAATYILMVPAWRYRVHRWEISDTAVYTRTGWFTQERRIAPISRVQTVDTERGPID 121
Query 130 RLFGLANVTVTTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
R+ GLA VTVTTASSAGAV I ALD ++ADR VAQLT+IA DAT
Sbjct 122 RMLGLATVTVTTASSAGAVKISALDQEIADRTVAQLTEIAGTNVGDAT 169
>gi|226365413|ref|YP_002783196.1| hypothetical protein ROP_60040 [Rhodococcus opacus B4]
gi|226243903|dbj|BAH54251.1| hypothetical membrane protein [Rhodococcus opacus B4]
Length=166
Score = 177 bits (449), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 95/160 (60%), Positives = 115/160 (72%), Gaps = 0/160 (0%)
Query 18 LALAEPAHRPSSQAPVMWALSASLGWILPVIAQLVWWAVHPQPPWPHLAAAALTAVAMVV 77
+ +AEP RPS +A +WA++A+L W + Q+V H P W H+ A+T V +V
Sbjct 7 VTMAEPLWRPSPKAKQLWAINAALVWFPVFVVQVVALVFHWWPVWVHVTVLAITVVLAIV 66
Query 78 HIGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQTVDTYRGPMDRLFGLANV 137
H+ VVPLWRYRVHRWEIS AV+TR+GW QERRI PISR+QTVDT RGP+DR+ GLA V
Sbjct 67 HVAVVPLWRYRVHRWEISDTAVYTRSGWFTQERRIAPISRIQTVDTERGPVDRMLGLATV 126
Query 138 TVTTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
TVTTASSAGAV I ALD D ADR VA+LT+IA DAT
Sbjct 127 TVTTASSAGAVKIAALDQDTADRTVARLTEIAGTNVGDAT 166
>gi|325676452|ref|ZP_08156130.1| membrane protein [Rhodococcus equi ATCC 33707]
gi|325552630|gb|EGD22314.1| membrane protein [Rhodococcus equi ATCC 33707]
Length=159
Score = 177 bits (448), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 102/160 (64%), Positives = 115/160 (72%), Gaps = 3/160 (1%)
Query 20 LAEPAHRPSSQAPVMWALSASLGWILPVIAQLVWWAVHPQ--PPWPHLAAAALTAVAMVV 77
+A+PA RPS++AP +WA +A+L W LPV A V WAV WPH+ A+T V
Sbjct 1 MADPAWRPSTKAPALWATTATLVW-LPVFAAQVVWAVLDGRWTTWPHVTVFAVTLAVAVA 59
Query 78 HIGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQTVDTYRGPMDRLFGLANV 137
I VVP WRYRVHRWEIS AV+TRTGW QERRI PI+R+QTVDT RGP+DRLFGLA V
Sbjct 60 DIVVVPRWRYRVHRWEISDDAVYTRTGWFDQERRIAPITRIQTVDTERGPLDRLFGLATV 119
Query 138 TVTTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
TVTTASSAGAV I ALD DVADR V QLT I A DAT
Sbjct 120 TVTTASSAGAVKITALDLDVADRTVEQLTAITARNAGDAT 159
>gi|111022906|ref|YP_705878.1| hypothetical protein RHA1_ro05943 [Rhodococcus jostii RHA1]
gi|110822436|gb|ABG97720.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=175
Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 94/160 (59%), Positives = 115/160 (72%), Gaps = 0/160 (0%)
Query 18 LALAEPAHRPSSQAPVMWALSASLGWILPVIAQLVWWAVHPQPPWPHLAAAALTAVAMVV 77
+A+A+P RPS +A +WA++A+L W+ + Q V H P W H+ A+T V V+
Sbjct 16 VAMADPLWRPSPKAKQLWAINAALLWLPLFVVQAVALVFHWWPVWVHVTVLAITVVLAVL 75
Query 78 HIGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQTVDTYRGPMDRLFGLANV 137
H+ VVPLWRYRVHRWEIS AV+TR+GW QERRI PISR+QTVDT RGP+DR+ GLA V
Sbjct 76 HVAVVPLWRYRVHRWEISDTAVYTRSGWFTQERRIAPISRIQTVDTERGPIDRMLGLATV 135
Query 138 TVTTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
TVTTASSAGAV I ALD D ADR V +LT+IA DAT
Sbjct 136 TVTTASSAGAVKISALDQDTADRTVTRLTEIAGTNVGDAT 175
>gi|54026727|ref|YP_120969.1| hypothetical protein nfa47530 [Nocardia farcinica IFM 10152]
gi|54018235|dbj|BAD59605.1| putative membrane protein [Nocardia farcinica IFM 10152]
Length=168
Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 86/167 (52%), Positives = 108/167 (65%), Gaps = 0/167 (0%)
Query 11 TGPQRNHLALAEPAHRPSSQAPVMWALSASLGWILPVIAQLVWWAVHPQPPWPHLAAAAL 70
TG + +A+PA RPS +A ++W + LGW++P +A +VW AV + + A
Sbjct 2 TGMSQPRTIMADPAWRPSPRAKLLWTAQSVLGWVIPFVALIVWAAVDSERRTLQVLALCA 61
Query 71 TAVAMVVHIGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQTVDTYRGPMDR 130
V VVP WRY VHRWEI+ +AV+TR GWL QE R+ PISRVQTVD RGP++R
Sbjct 62 GLALAVFSALVVPWWRYAVHRWEITDEAVYTRVGWLSQESRVAPISRVQTVDIERGPLER 121
Query 131 LFGLANVTVTTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
L GLA VTVTTASSAGAV I LD VA+ V +LT+IAA DAT
Sbjct 122 LLGLATVTVTTASSAGAVTITGLDLPVAEETVRRLTEIAARHRGDAT 168
>gi|296268839|ref|YP_003651471.1| hypothetical protein Tbis_0854 [Thermobispora bispora DSM 43833]
gi|296091626|gb|ADG87578.1| membrane-flanked domain protein [Thermobispora bispora DSM 43833]
Length=159
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/158 (51%), Positives = 97/158 (62%), Gaps = 0/158 (0%)
Query 20 LAEPAHRPSSQAPVMWALSASLGWILPVIAQLVWWAVHPQPPWPHLAAAALTAVAMVVHI 79
L PAHR S A W A LGW++ Q W V +AA T V V HI
Sbjct 2 LRAPAHRVSRTAIWYWFTKALLGWLIAAGFQAFWVVVRDHHEPLRIAALTATVVLAVPHI 61
Query 80 GVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQTVDTYRGPMDRLFGLANVTV 139
V+P WRYRVHRWE +P AV+TR+GWL QE RI PISR+QTVD+ +GP++RLF LA VTV
Sbjct 62 AVMPWWRYRVHRWEATPLAVYTRSGWLTQEWRIAPISRIQTVDSVQGPLERLFRLATVTV 121
Query 140 TTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
TTAS+AG V + L + A R+VA+LT DAT
Sbjct 122 TTASAAGPVRVSGLGAETARRLVAELTANVQSTTGDAT 159
>gi|291302521|ref|YP_003513799.1| hypothetical protein Snas_5070 [Stackebrandtia nassauensis DSM
44728]
gi|290571741|gb|ADD44706.1| membrane-flanked domain protein [Stackebrandtia nassauensis DSM
44728]
Length=169
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/161 (49%), Positives = 101/161 (63%), Gaps = 6/161 (3%)
Query 20 LAEPAHRPSSQAPVMWALSASLGWILPVIAQLVWWAVHPQPP---WPHLAAAALTAVAMV 76
L P +R +A + W L A +G ++ V LV +A+ P WP L L AV +
Sbjct 12 LRPPRNRIDRRAVLWWTLRALIGSVVFVGGGLVAFALFPDARPWVWPPLV---LFAVIGL 68
Query 77 VHIGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQTVDTYRGPMDRLFGLAN 136
V + P WRYRVHRWE++ +AV+T TGW +E R+ P+SR+QTVDT RGP+ + GLA
Sbjct 69 VLTLITPRWRYRVHRWEVTDEAVYTATGWFTKEWRVAPMSRIQTVDTERGPLQQWLGLAK 128
Query 137 VTVTTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
VTVTTASSAG + IE LD +VA+RV QL D A L DAT
Sbjct 129 VTVTTASSAGNIEIEGLDAEVAERVSRQLADAAGLTEGDAT 169
>gi|256375206|ref|YP_003098866.1| membrane-flanked domain-containing protein [Actinosynnema mirum
DSM 43827]
gi|255919509|gb|ACU35020.1| membrane-flanked domain protein [Actinosynnema mirum DSM 43827]
Length=161
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/161 (48%), Positives = 101/161 (63%), Gaps = 2/161 (1%)
Query 18 LALAEPAHRPSSQAPVMWALSASLGWILPVIAQLV-WWAVHPQPPWPHLAAAALTAVAMV 76
L L P +R S +A +W L A++GW++ + QLV ++ V PW +A T V V
Sbjct 2 LRLRAPRNRVSRRAITLWTLDAAIGWLVLLAIQLVPYFLVSDASPW-QIAGLVATVVVGV 60
Query 77 VHIGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQTVDTYRGPMDRLFGLAN 136
H V+P WRYRVHRWE +P+AV+T +GW+ QE RI P+SR+QTVDT RGP+ +L L+
Sbjct 61 AHTLVMPRWRYRVHRWEATPEAVYTLSGWVTQEWRIAPVSRIQTVDTKRGPLQQLLRLST 120
Query 137 VTVTTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
VTVTTAS+AG V I LD A R+ +LT DAT
Sbjct 121 VTVTTASAAGPVEIAGLDHAEAVRLAEELTSTTQATPGDAT 161
>gi|302529900|ref|ZP_07282242.1| membrane-flanked domain-containing protein [Streptomyces sp.
AA4]
gi|302438795|gb|EFL10611.1| membrane-flanked domain-containing protein [Streptomyces sp.
AA4]
Length=170
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/161 (50%), Positives = 101/161 (63%), Gaps = 0/161 (0%)
Query 17 HLALAEPAHRPSSQAPVMWALSASLGWILPVIAQLVWWAVHPQPPWPHLAAAALTAVAMV 76
L L P HR S QA WA SA GW+L + Q V A PP L+ V
Sbjct 10 ELRLRPPEHRVSRQAIGHWAASAGAGWLLVLAVQAVVVATADDPPSWLTVTLLLSCVLAP 69
Query 77 VHIGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQTVDTYRGPMDRLFGLAN 136
+H+ V+P WRYRVHRWE++ +AV+T++GWL QE RI PISR+QTVD RGP+++LFGLA
Sbjct 70 LHLLVMPQWRYRVHRWEVTGEAVYTQSGWLKQEWRIAPISRIQTVDVERGPLEQLFGLAR 129
Query 137 VTVTTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
+TVTTAS+AG + I LD DVA + +LT EDAT
Sbjct 130 LTVTTASAAGPLRISGLDRDVAVALADELTRTTQAVREDAT 170
>gi|317126481|ref|YP_004100593.1| membrane-flanked domain [Intrasporangium calvum DSM 43043]
gi|315590569|gb|ADU49866.1| membrane-flanked domain [Intrasporangium calvum DSM 43043]
Length=161
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/161 (48%), Positives = 98/161 (61%), Gaps = 1/161 (0%)
Query 18 LALAEPAHRPSSQAPVMWALSASLGWILPVIAQLVWWAV-HPQPPWPHLAAAALTAVAMV 76
+ L EPA+ S +A MW + A LG + AQ+ WW + H H+ A V
Sbjct 1 MQLREPANLVSPRAVRMWTVEAVLGALFLGAAQVGWWLLDHAADRTLHVVLAVAWLVLST 60
Query 77 VHIGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQTVDTYRGPMDRLFGLAN 136
+ +P WRYRVHRWE + A++T+TGWL QERRI P+SRVQTVD RGP+ +LFGLA
Sbjct 61 AYAIGMPRWRYRVHRWEATRHAIYTQTGWLNQERRIAPLSRVQTVDLERGPLAQLFGLAT 120
Query 137 VTVTTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
VTVTTAS+AG + I LD +VA +V LT A DAT
Sbjct 121 VTVTTASAAGPLEIAGLDLEVARGLVDTLTTAAVAEKGDAT 161
>gi|262203456|ref|YP_003274664.1| membrane-flanked domain-containing protein [Gordonia bronchialis
DSM 43247]
gi|262086803|gb|ACY22771.1| membrane-flanked domain protein [Gordonia bronchialis DSM 43247]
Length=166
Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/158 (45%), Positives = 100/158 (64%), Gaps = 0/158 (0%)
Query 20 LAEPAHRPSSQAPVMWALSASLGWILPVIAQLVWWAVHPQPPWPHLAAAALTAVAMVVHI 79
L EPAHR +A +W + L I IA +V A+ WP + AAA+ V V+ +
Sbjct 9 LREPAHRVDPRAKTLWRIGPLLTGIPLTIAAIVLAALVEAARWPAVGAAAVIIVLTVLWV 68
Query 80 GVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQTVDTYRGPMDRLFGLANVTV 139
VPLWRYR HRWE++ +AV+T++GW V+ R I PI+R+Q VDT GP++++ L+ +TV
Sbjct 69 TAVPLWRYRFHRWEVAEEAVYTQSGWFVRHRVIIPIARIQVVDTEAGPVEQMLRLSTLTV 128
Query 140 TTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
TTASSAG + I LD D+A +V A+LT +DAT
Sbjct 129 TTASSAGTIRIAGLDADLARQVAAELTARTQAFHDDAT 166
>gi|284044287|ref|YP_003394627.1| membrane-flanked domain protein [Conexibacter woesei DSM 14684]
gi|283948508|gb|ADB51252.1| membrane-flanked domain protein [Conexibacter woesei DSM 14684]
Length=164
Score = 127 bits (319), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 75/163 (47%), Positives = 102/163 (63%), Gaps = 0/163 (0%)
Query 15 RNHLALAEPAHRPSSQAPVMWALSASLGWILPVIAQLVWWAVHPQPPWPHLAAAALTAVA 74
N L L P +R +A W A + P++A V + + P AA A AVA
Sbjct 2 ENELRLRPPQNRVDERAVRWWTAQAVATVVPPMLALAVAFVLAPGARGWLGAALASGAVA 61
Query 75 MVVHIGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQTVDTYRGPMDRLFGL 134
+ ++ V+P WRYRVHRWE +P AV+ +GWL+QE R+ P+SRVQTVDT RGP+ +LFGL
Sbjct 62 GLAYVVVMPRWRYRVHRWETTPDAVYASSGWLLQEWRVAPLSRVQTVDTLRGPLQQLFGL 121
Query 135 ANVTVTTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
A+VTVTTAS+ GA+ I+ LD ++A VV +LT+ DAT
Sbjct 122 ASVTVTTASAKGAITIDGLDHELAAEVVHRLTETTQATPGDAT 164
>gi|300789663|ref|YP_003769954.1| hypothetical protein AMED_7845 [Amycolatopsis mediterranei U32]
gi|299799177|gb|ADJ49552.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
gi|340531327|gb|AEK46532.1| hypothetical protein RAM_40325 [Amycolatopsis mediterranei S699]
Length=169
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/159 (46%), Positives = 101/159 (64%), Gaps = 2/159 (1%)
Query 20 LAEPAHRPSSQAPVMWALSASLGWILPVIAQLVWWAVHPQPPWPHLAAAALTAVAMVVHI 79
L PAHR S +A W ++AS+ WI+ + Q + PP A++ V +H+
Sbjct 12 LRPPAHRVSRRAIGYWTVTASILWIILIGVQTLIVVTSDDPPSFLTVTLAISCVLGPLHL 71
Query 80 GVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQTVDTYRGPMDRLFGLANVTV 139
V+P WRYRVHRWE++ +AV+T++GWL QE RI P+SR+QTVD R P ++LFGLA +TV
Sbjct 72 IVMPQWRYRVHRWEVTGEAVYTQSGWLKQEWRIAPVSRIQTVDIERDPFEQLFGLAKITV 131
Query 140 TTASSAGAVHIEALDTDVADRVVAQLTDIA-ALRGEDAT 177
TTAS+AG + I L D A + +LT A+RG DAT
Sbjct 132 TTASAAGPLRIAGLAHDRALALAEELTKTTQAVRG-DAT 169
>gi|258653930|ref|YP_003203086.1| membrane-flanked domain-containing protein [Nakamurella multipartita
DSM 44233]
gi|258557155|gb|ACV80097.1| membrane-flanked domain protein [Nakamurella multipartita DSM
44233]
Length=177
Score = 124 bits (310), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 80/166 (49%), Positives = 98/166 (60%), Gaps = 8/166 (4%)
Query 16 NHLALAEPAHRPSSQAPVMWALSASLGWIL----PVIAQLVWWAVHPQPPWPHLAAAALT 71
L L PA+R S +A W SA GW L V A L+ W P PP L A+T
Sbjct 16 TRLTLRPPANRVSPRALWYWFTSALAGWALVLAVEVAALLLDW---PFPP-AKLPVLAIT 71
Query 72 AVAMVVHIGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQTVDTYRGPMDRL 131
VH+ +P R RVHRWE++ AV+TRTGW QE RI P+SRVQTVD+ RGP+ RL
Sbjct 72 LAVAAVHVTAMPWLRRRVHRWELTGTAVYTRTGWWTQESRIAPLSRVQTVDSARGPLARL 131
Query 132 FGLANVTVTTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
FGL VTVTTAS+AG + I+ALD A + A +T + EDAT
Sbjct 132 FGLTEVTVTTASAAGPLRIQALDQATAADLAADITRASEQFREDAT 177
>gi|297561205|ref|YP_003680179.1| membrane-flanked domain-containing protein [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296845653|gb|ADH67673.1| membrane-flanked domain protein [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length=165
Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/133 (49%), Positives = 90/133 (68%), Gaps = 4/133 (3%)
Query 45 LPVIAQLVWWAVHPQPPWPHLAAAALTAVAMVVHIGVVPLWRYRVHRWEISPQAVFTRTG 104
+PV+ ++W P W AAA + + +++ + V+P WRYRVHRWE++ AV+T +G
Sbjct 37 IPVVPAIIW---EPPRAWFLAAAAVVGGIGLLITV-VMPRWRYRVHRWEVTDTAVYTSSG 92
Query 105 WLVQERRITPISRVQTVDTYRGPMDRLFGLANVTVTTASSAGAVHIEALDTDVADRVVAQ 164
WL QE R+ P+SR+QTVDT RGP+ R FGL++VTVTTAS+AG + I LD ++A RV Q
Sbjct 93 WLWQEWRVAPMSRIQTVDTARGPLQRAFGLSSVTVTTASAAGPIEITGLDHELATRVADQ 152
Query 165 LTDIAALRGEDAT 177
LTD DAT
Sbjct 153 LTDTTQATPGDAT 165
>gi|119717733|ref|YP_924698.1| membrane-flanked domain-containing protein [Nocardioides sp.
JS614]
gi|119538394|gb|ABL83011.1| membrane-flanked domain [Nocardioides sp. JS614]
Length=165
Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/175 (47%), Positives = 107/175 (62%), Gaps = 23/175 (13%)
Query 14 QRNHLALAEPAHRPSSQAPVMWALSASL--GWILPVIA---------QLVWWAVHPQPPW 62
+++ L EP+ R S +A +MW L A+L G +L V+ L WWA+ P
Sbjct 3 EQSQPRLREPSQRVSPRARLMWGLGAALEAGALLVVLVVTGPVGGWLPLPWWALVP---- 58
Query 63 PHLAAAALTAVAMVVHIGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQTVD 122
AL A A VV VVP WRYRVHRWE++ AV+T+TGW +ERRI P+SR+QTVD
Sbjct 59 -----VALGAAAYVV---VVPQWRYRVHRWEVTGTAVYTQTGWWARERRIAPMSRIQTVD 110
Query 123 TYRGPMDRLFGLANVTVTTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
G + RLFGLA VTVTTAS+AGA+ I+ L+ + A +V +LT +A DAT
Sbjct 111 HAEGAIARLFGLATVTVTTASAAGALEIDGLERERALALVDELTLMADSVPGDAT 165
>gi|256826117|ref|YP_003150077.1| hypothetical protein Ksed_23370 [Kytococcus sedentarius DSM 20547]
gi|256689510|gb|ACV07312.1| uncharacterized conserved protein [Kytococcus sedentarius DSM
20547]
Length=164
Score = 121 bits (303), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 76/161 (48%), Positives = 97/161 (61%), Gaps = 6/161 (3%)
Query 20 LAEPAHRPSSQAPVMWALSA--SLGWILPVIAQLV---WWAVHPQPPWPHLAAAALTAVA 74
L EP HR S +AP W L A SL L V ++ W+ PPW A L A
Sbjct 2 LDEPRHRVSPKAPAYWRLWAWISLAITLVVCGTVLGLWWFFADAAPPWWAWTIAGLWVAA 61
Query 75 MVVHIGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQTVDTYRGPMDRLFGL 134
+V + V P RYRV RWE +P A++TRTGWL ERR+ P++R+QTVD RGP+ R FGL
Sbjct 62 DLVSLAVAPQIRYRVARWEATPDAMYTRTGWLNIERRMVPLARIQTVDVSRGPIMRHFGL 121
Query 135 ANVTVTTASSAGAVHIEALDTDVADRVVAQLTD-IAALRGE 174
+V VTTASS G + IEALD A ++ +LT AA+RG+
Sbjct 122 TDVKVTTASSQGDIEIEALDDVNAQALLEELTRAAAAVRGD 162
>gi|302545308|ref|ZP_07297650.1| membrane-flanked domain protein [Streptomyces hygroscopicus ATCC
53653]
gi|302462926|gb|EFL26019.1| membrane-flanked domain protein [Streptomyces himastatinicus
ATCC 53653]
Length=166
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/163 (42%), Positives = 103/163 (64%), Gaps = 2/163 (1%)
Query 16 NHLALAEPAHRPSSQAPVMWALSASLGWI-LPVIAQLVWWAVHPQPPWPHLAAAALTAVA 74
+++ L P HR +A W L +SL + LP+ ++W ++ P + + A ++ V
Sbjct 5 DNVRLRPPRHRVDRRALGWWTLQSSLFALPLPLTFGILWASIPPTRTF-FMWATLISLVP 63
Query 75 MVVHIGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQTVDTYRGPMDRLFGL 134
++++ V+P WRYRVHRWE + +AV+ +GWL Q+ R+ P+SRVQTVDT RGP+ ++FGL
Sbjct 64 GILYVAVMPAWRYRVHRWEATDEAVYAASGWLWQQWRVVPLSRVQTVDTLRGPLQQMFGL 123
Query 135 ANVTVTTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
+ +TVTTASSA AV I+ +D +A +V LT DAT
Sbjct 124 SGITVTTASSAAAVKIKGIDHKIAGDLVEYLTRTTQAVPGDAT 166
>gi|324998650|ref|ZP_08119762.1| membrane-flanked domain-containing protein [Pseudonocardia sp.
P1]
Length=182
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/168 (44%), Positives = 99/168 (59%), Gaps = 2/168 (1%)
Query 12 GPQRNHLALAEPAHRPSSQAPVMWALSASLGWILPVIAQLVWWAVHPQPPWPHL--AAAA 69
G ++ L L PAHR +A W L ++ ++AQ V W + P+ PW L A
Sbjct 15 GTEQLPLPLRPPAHRVDGRAIWWWRLRGLPTPVVLLVAQGVGWVLLPREPWHGLLIATIT 74
Query 70 LTAVAMVVHIGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQTVDTYRGPMD 129
LT + ++V +VP RYR+HRWE++ +AV+TR+GWLV+E RI PI RVQTVDT GP+
Sbjct 75 LTVLWLLVATLLVPTLRYRLHRWEVTDEAVYTRSGWLVREWRIAPIPRVQTVDTEHGPLQ 134
Query 130 RLFGLANVTVTTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
+ L VTVTTAS+ G V I LD D A + +LT+ DAT
Sbjct 135 QALRLGTVTVTTASARGPVRIAGLDADEARELARRLTETTGRHSGDAT 182
>gi|296139055|ref|YP_003646298.1| membrane-flanked domain-containing protein [Tsukamurella paurometabola
DSM 20162]
gi|296027189|gb|ADG77959.1| membrane-flanked domain protein [Tsukamurella paurometabola DSM
20162]
Length=174
Score = 118 bits (295), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/173 (43%), Positives = 102/173 (59%), Gaps = 1/173 (0%)
Query 6 NVPSATGPQRNHLALAEPAHRPSSQAPVMWALSASLGWILPVIAQLVWWAVHPQPPW-PH 64
VP H L +PAH+ S +A WA+ A+L WI+ + + A+ P PW
Sbjct 2 TVPGVPAVDGAHEVLRQPAHQVSPKAKTWWAVRAALRWIVIIPVVTIAIALIPDMPWFVT 61
Query 65 LAAAALTAVAMVVHIGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQTVDTY 124
L A A H+ V+P +RY HRWE++P +V+++ GWL + R + P+SRVQ +DT
Sbjct 62 AVVFVLLAAAAAAHLVVMPRFRYAFHRWEVNPVSVYSQAGWLTRTRVLIPVSRVQVIDTV 121
Query 125 RGPMDRLFGLANVTVTTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
GP++R FGL+ VTVTTASSAG V I L T+VA + A LT AA +DAT
Sbjct 122 AGPLERSFGLSTVTVTTASSAGTVRISGLPTEVAQSIAANLTVSAAEDTDDAT 174
>gi|254385614|ref|ZP_05000938.1| membrane-flanked domain containing protein [Streptomyces sp.
Mg1]
gi|194344483|gb|EDX25449.1| membrane-flanked domain containing protein [Streptomyces sp.
Mg1]
Length=166
Score = 117 bits (292), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 70/164 (43%), Positives = 104/164 (64%), Gaps = 4/164 (2%)
Query 16 NHLALAEPAHRPSSQAPVMWALSASLGWI-LPVIAQLVWWAVHP-QPPWPHLAAAALTAV 73
L L P +R S+A W L +SL + LP++ +++ + P + + L AAL V
Sbjct 5 QELRLRPPRNRVESRAIGWWTLQSSLFALPLPLVFGVLYLTIGPARFVFGPLFLAAL--V 62
Query 74 AMVVHIGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQTVDTYRGPMDRLFG 133
++++GV+P+WRYRVHRWE++ +AV+ +GWL Q R+ P+SRVQTVD RGP+ ++F
Sbjct 63 PGLLYMGVMPIWRYRVHRWEMTDEAVYAASGWLWQRWRVVPLSRVQTVDMLRGPLQQMFR 122
Query 134 LANVTVTTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
L+ +TVT+ASS+GAV I+ LD A +V QLT DAT
Sbjct 123 LSGITVTSASSSGAVKIKGLDHGTATELVEQLTRSTQAVPGDAT 166
>gi|345015254|ref|YP_004817608.1| hypothetical protein Strvi_8005 [Streptomyces violaceusniger
Tu 4113]
gi|344041603|gb|AEM87328.1| membrane-flanked domain DUF304 [Streptomyces violaceusniger Tu
4113]
Length=166
Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/165 (41%), Positives = 103/165 (63%), Gaps = 2/165 (1%)
Query 14 QRNHLALAEPAHRPSSQAPVMWAL-SASLGWILPVIAQLVWWAVHPQPPWPHLAAAALTA 72
+ ++L L P HR +A W + SA LP++ ++W ++ P + + A ++
Sbjct 3 RHDNLRLRPPRHRVDRRAIGWWTVQSAVFALPLPLVFGILWASIPPTREF-FMWATLISL 61
Query 73 VAMVVHIGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQTVDTYRGPMDRLF 132
V ++++ V+P WRYRVHRWE + +AV+ +GWL Q+ R+ P+SRVQTVDT RGP+ ++F
Sbjct 62 VPGLLYMAVMPAWRYRVHRWEATGEAVYAASGWLWQQWRVVPLSRVQTVDTLRGPIQQMF 121
Query 133 GLANVTVTTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
GL+ VTVTTAS+AGAV I+ +D +A +V L DAT
Sbjct 122 GLSGVTVTTASAAGAVKIKGIDHKMAADLVEHLAKSTQAVPGDAT 166
>gi|291300311|ref|YP_003511589.1| hypothetical protein Snas_2820 [Stackebrandtia nassauensis DSM
44728]
gi|290569531|gb|ADD42496.1| membrane-flanked domain protein [Stackebrandtia nassauensis DSM
44728]
Length=174
Score = 113 bits (283), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 55/112 (50%), Positives = 79/112 (71%), Gaps = 0/112 (0%)
Query 66 AAAALTAVAMVVHIGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQTVDTYR 125
A + AV + ++ V+P WRYRVHRWE + +AV+T +GWL QE R+ P+SR+QT+DT R
Sbjct 63 AGLVVVAVLGIGYVLVMPRWRYRVHRWETTEEAVYTASGWLRQEWRVAPMSRIQTIDTSR 122
Query 126 GPMDRLFGLANVTVTTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
GP+ R+F L+++T+TTAS+ GA+ I LD ++AD + QLT I DAT
Sbjct 123 GPLQRMFRLSSLTITTASAKGAIAINGLDHEIADDLAHQLTAITQATPGDAT 174
>gi|62737764|gb|AAX98181.1| putative membrane protein [Streptomyces aizunensis]
Length=163
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/159 (42%), Positives = 97/159 (62%), Gaps = 2/159 (1%)
Query 20 LAEPAHRPSSQAPVMWAL-SASLGWILPVIAQLVWWAVHPQPPWPHLAAAALTAVAMVVH 78
L P +R S+A W + SA LP+ +++ + P P+ A ++ V + +
Sbjct 6 LRPPRNRVDSRAVGWWTVQSAMYALPLPITFGVLYLCIPPARPF-FGWAFLISLVPGLAY 64
Query 79 IGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQTVDTYRGPMDRLFGLANVT 138
+ V+P WRYRVHRWE + +AV+ +GWL Q+ R+ P+SR+QTVDT RGP+ +LFGL+ +T
Sbjct 65 MAVMPAWRYRVHRWETTDEAVYAASGWLWQQWRVVPMSRIQTVDTLRGPLQQLFGLSGIT 124
Query 139 VTTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
VTTAS +GAV I+ +D A VV LT + DAT
Sbjct 125 VTTASYSGAVKIKGIDHRTARDVVEHLTRVTQATPGDAT 163
>gi|269956867|ref|YP_003326656.1| membrane-flanked domain-containing protein [Xylanimonas cellulosilytica
DSM 15894]
gi|269305548|gb|ACZ31098.1| membrane-flanked domain protein [Xylanimonas cellulosilytica
DSM 15894]
Length=170
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/167 (45%), Positives = 104/167 (63%), Gaps = 10/167 (5%)
Query 16 NHLALAEPAHRPSSQAPVMWALSASLGWILPVIAQ-----LVWWAVHPQPPWPHLAAAAL 70
+ L L P +R +A + W + SL + P++A ++W A P W + A +
Sbjct 9 SQLTLRPPKNRVERRA-IGWWMLQSLAFFAPILAASIVAFVLWEAARP---W-LIVAVVV 63
Query 71 TAVAMVVHIGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQTVDTYRGPMDR 130
+AV +VV + V PLWRYRVHRWE + QAV+ RTGWLV+E R P+SRVQTVD +GP+++
Sbjct 64 SAVLLVVGVVVEPLWRYRVHRWEATSQAVYARTGWLVREWRAAPLSRVQTVDAVQGPLEQ 123
Query 131 LFGLANVTVTTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
+ GL+ + VTTAS+ GA+ I +D D A RV LT IA L DAT
Sbjct 124 MLGLSTLRVTTASAQGAISIGGIDKDTAARVAEDLTRIAELIPGDAT 170
>gi|344998967|ref|YP_004801821.1| membrane-flanked domain-containing protein [Streptomyces sp.
SirexAA-E]
gi|344314593|gb|AEN09281.1| membrane-flanked domain protein [Streptomyces sp. SirexAA-E]
Length=167
Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/122 (50%), Positives = 82/122 (68%), Gaps = 1/122 (0%)
Query 56 VHPQPPWPHLAAAALTAVAMVVHIGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPI 115
+ P PW + AA L AV + V ++PLW +R HRWE++ +AV+ RTG ++E RI P+
Sbjct 47 ITPARPWLLVPAAVLAAVGLSV-TALLPLWWFRTHRWEVTDEAVYVRTGVFLREWRIAPM 105
Query 116 SRVQTVDTYRGPMDRLFGLANVTVTTASSAGAVHIEALDTDVADRVVAQLTDIAALRGED 175
SR+QTVDT RGP+++LFGLA VTVTTAS+ GAV IE L + A + +LT I D
Sbjct 106 SRIQTVDTVRGPLEQLFGLATVTVTTASAKGAVKIEGLGHETAADLAERLTRITQDTPGD 165
Query 176 AT 177
AT
Sbjct 166 AT 167
>gi|343927649|ref|ZP_08767117.1| hypothetical protein GOALK_097_00700 [Gordonia alkanivorans NBRC
16433]
gi|343762290|dbj|GAA14043.1| hypothetical protein GOALK_097_00700 [Gordonia alkanivorans NBRC
16433]
Length=172
Score = 110 bits (275), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 67/161 (42%), Positives = 93/161 (58%), Gaps = 0/161 (0%)
Query 17 HLALAEPAHRPSSQAPVMWALSASLGWILPVIAQLVWWAVHPQPPWPHLAAAALTAVAMV 76
H L EP ++ +A +W + + + IA +V V P W AA A+ V
Sbjct 12 HPTLREPVNQVDPRAKTLWRVGPLILGVPATIAAIVVAVVVPDARWGATLAAIALALLTV 71
Query 77 VHIGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQTVDTYRGPMDRLFGLAN 136
+ VVPLWRYR HRWE+S AV+ ++GW V+ R I PI+R+Q VDT GP+++L L
Sbjct 72 FYTTVVPLWRYRFHRWEVSEDAVYAQSGWFVRHRVIIPIARIQVVDTEAGPLEQLLKLGK 131
Query 137 VTVTTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
+TVTTASSAG +HIE LD ++A + LT +DAT
Sbjct 132 LTVTTASSAGTIHIEGLDAELARATASDLTIRTQAFTDDAT 172
>gi|326331001|ref|ZP_08197300.1| bacterial membrane flanked domain protein [Nocardioidaceae bacterium
Broad-1]
gi|325951212|gb|EGD43253.1| bacterial membrane flanked domain protein [Nocardioidaceae bacterium
Broad-1]
Length=171
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/174 (44%), Positives = 100/174 (58%), Gaps = 9/174 (5%)
Query 9 SATGPQRNHLALAEPAHRPSSQAPVMWALSASLG---WILPVIAQLVWWAVHPQPPWPHL 65
+A PQR L EPAH+ S +AP W + ++G W+ + +V + P W +
Sbjct 2 NADAPQR----LREPAHQVSERAPAYWRTAEAIGAVIWLALAVGAVVAAVMVPDGFWTWI 57
Query 66 A--AAALTAVAMVVHIGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQTVDT 123
AA + A+A V + VP R+R+HRWE++ AV R GWL I P+SRVQTVD+
Sbjct 58 LWLAAVVFALAPVPGLTFVPSIRFRIHRWEVTDIAVHVRHGWLTVVDEIVPLSRVQTVDS 117
Query 124 YRGPMDRLFGLANVTVTTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
+GP+ R FGL V V+TASSAG V I LD +A VVA+L I A EDAT
Sbjct 118 TQGPLMRRFGLRTVKVSTASSAGIVQIACLDDALALEVVAKLVAITAATPEDAT 171
>gi|134097812|ref|YP_001103473.1| membrane-flanked domain-containing protein [Saccharopolyspora
erythraea NRRL 2338]
gi|291005552|ref|ZP_06563525.1| membrane-flanked domain-containing protein [Saccharopolyspora
erythraea NRRL 2338]
gi|133910435|emb|CAM00548.1| membrane-flanked domain protein [Saccharopolyspora erythraea
NRRL 2338]
Length=172
Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 54/102 (53%), Positives = 72/102 (71%), Gaps = 0/102 (0%)
Query 76 VVHIGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQTVDTYRGPMDRLFGLA 135
+ ++ V+P WRYRVHRWE + AV+T GW+ QE R+ P+SR+QTVDT RGP+ ++F L+
Sbjct 71 IAYVLVMPRWRYRVHRWETTDDAVYTAAGWISQEWRVAPMSRIQTVDTVRGPLQQMFDLS 130
Query 136 NVTVTTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
+VTVTTAS+AG + IE LD VA +V QLT DAT
Sbjct 131 SVTVTTASAAGPLTIEGLDRQVAVDLVQQLTATTQATPGDAT 172
>gi|320011436|gb|ADW06286.1| membrane-flanked domain protein [Streptomyces flavogriseus ATCC
33331]
Length=167
Score = 107 bits (266), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 55/95 (58%), Positives = 69/95 (73%), Gaps = 0/95 (0%)
Query 83 PLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQTVDTYRGPMDRLFGLANVTVTTA 142
P+W +R HRWEI+ AV+ RTG+ QE RI P+SR+QTVDT RGP+++LFGL+ VTVTTA
Sbjct 73 PVWWFRTHRWEITEDAVYVRTGFFRQEWRIAPMSRIQTVDTVRGPLEQLFGLSTVTVTTA 132
Query 143 SSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
S+ GAV IE LD +VA + QLT I DAT
Sbjct 133 SAKGAVRIEGLDHEVAADLARQLTRITRDTPGDAT 167
>gi|297195054|ref|ZP_06912452.1| membrane-flanked domain-containing protein [Streptomyces pristinaespiralis
ATCC 25486]
gi|197721555|gb|EDY65463.1| membrane-flanked domain-containing protein [Streptomyces pristinaespiralis
ATCC 25486]
Length=166
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/163 (44%), Positives = 91/163 (56%), Gaps = 2/163 (1%)
Query 16 NHLALAEPAHRPSSQAPVMWALSASLGWILPVIAQLVWWA-VHPQPPWPHLAAAALTAVA 74
N + L P +R + +A W L +P + V A + P W L A + AV
Sbjct 5 NTVRLRPPNNRLNERAVNWWRTQVLLTAAVPALVLAVLGAFIEPARTW-LLVPAGVIAVL 63
Query 75 MVVHIGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQTVDTYRGPMDRLFGL 134
+ P W YRVHRWE++ +AV+ RTG L QE RI P+SR+QTVDT RGP+++ F L
Sbjct 64 GLACTAFFPAWWYRVHRWEVTDEAVYVRTGALWQEWRIAPMSRIQTVDTVRGPLEQAFRL 123
Query 135 ANVTVTTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
A VTVTTAS+ GAV IE LD VA + LT I DAT
Sbjct 124 ATVTVTTASAKGAVRIEGLDHQVAADLAEDLTRITRATPGDAT 166
>gi|269125928|ref|YP_003299298.1| hypothetical protein Tcur_1685 [Thermomonospora curvata DSM 43183]
gi|268310886|gb|ACY97260.1| membrane-flanked domain protein [Thermomonospora curvata DSM
43183]
Length=186
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/197 (38%), Positives = 97/197 (50%), Gaps = 37/197 (18%)
Query 2 DHARNVPSATGPQRNHLALAEPAHRPSSQAPVMWALSASLGWILPVI------------- 48
D + P+ P R L PAHR S +A WA+ LGW L
Sbjct 6 DFSEAGPAGGAPPR----LRPPAHRVSPRAIAHWAIDYLLGWGLAFAIALGAAAWADSAR 61
Query 49 --------AQLVWWAVHPQPPWPHLAAAALTAVAMVVHIGVVPLWRYRVHRWEISPQAVF 100
A+ +WWA P AA LTA V P WRYRVHRWE+S V+
Sbjct 62 PAQLPAWAAERIWWA-----PLAVGAAGLLTAT-------VAPAWRYRVHRWEVSADVVY 109
Query 101 TRTGWLVQERRITPISRVQTVDTYRGPMDRLFGLANVTVTTASSAGAVHIEALDTDVADR 160
TRTGW ++ + P+SR+QTVDT +GP++RL GLA + + TAS AG+ + L +VA
Sbjct 110 TRTGWFSRQWLLVPVSRIQTVDTAQGPVERLLGLATIKINTASHAGSSEVAGLPVEVATH 169
Query 161 VVAQLTDIAALRGEDAT 177
+ +L A +DAT
Sbjct 170 LAGELARRAHDLRDDAT 186
>gi|257055484|ref|YP_003133316.1| hypothetical protein Svir_14490 [Saccharomonospora viridis DSM
43017]
gi|256585356|gb|ACU96489.1| uncharacterized conserved protein [Saccharomonospora viridis
DSM 43017]
Length=168
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/97 (58%), Positives = 70/97 (73%), Gaps = 0/97 (0%)
Query 81 VVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQTVDTYRGPMDRLFGLANVTVT 140
++PLW Y VHRWEI+ AV+TRTG L +E R+ P+SR+QTVDT RGP++++FGLA VTVT
Sbjct 72 LLPLWWYHVHRWEITDDAVYTRTGLLWREWRVAPMSRIQTVDTQRGPLEQVFGLATVTVT 131
Query 141 TASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
TAS+ GAV I LD +A VV QLT DAT
Sbjct 132 TASAKGAVTIPGLDHALASDVVEQLTRTTQATPGDAT 168
>gi|271962360|ref|YP_003336556.1| hypothetical protein Sros_0799 [Streptosporangium roseum DSM
43021]
gi|270505535|gb|ACZ83813.1| conserved hypothetical protein [Streptosporangium roseum DSM
43021]
Length=196
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/102 (51%), Positives = 74/102 (73%), Gaps = 0/102 (0%)
Query 65 LAAAALTAVAMVVHIGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQTVDTY 124
L A + AV V++ V+P WR+RVHRWE + AV+ +GW+ Q+ R+ P+SR+QTVDT
Sbjct 84 LLPALVIAVLGAVYVLVMPRWRFRVHRWETTDDAVYAASGWIWQKWRVAPMSRIQTVDTV 143
Query 125 RGPMDRLFGLANVTVTTASSAGAVHIEALDTDVADRVVAQLT 166
RGP+ ++FGL+ VTVTTAS+AGA+ I LD +A +V +LT
Sbjct 144 RGPLQQIFGLSGVTVTTASAAGAIKINGLDHALAADLVERLT 185
>gi|239986882|ref|ZP_04707546.1| hypothetical protein SrosN1_06210 [Streptomyces roseosporus NRRL
11379]
gi|291443833|ref|ZP_06583223.1| membrane-flanked domain-containing protein [Streptomyces roseosporus
NRRL 15998]
gi|291346780|gb|EFE73684.1| membrane-flanked domain-containing protein [Streptomyces roseosporus
NRRL 15998]
Length=168
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/96 (57%), Positives = 68/96 (71%), Gaps = 0/96 (0%)
Query 82 VPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQTVDTYRGPMDRLFGLANVTVTT 141
PLW +R HRWEI+ AV+ RTG+ QE RI P+SR+QTVDT RGP+++LF LA VTVTT
Sbjct 73 FPLWWFRTHRWEITEDAVYVRTGFFWQEWRIAPMSRIQTVDTVRGPLEQLFRLATVTVTT 132
Query 142 ASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
AS+ GAV I+ LD ++A + QLT I DAT
Sbjct 133 ASAKGAVRIQGLDHELAADLAGQLTRITRDTPGDAT 168
>gi|294811977|ref|ZP_06770620.1| Membrane-flanked domain-containing protein [Streptomyces clavuligerus
ATCC 27064]
gi|326440295|ref|ZP_08215029.1| hypothetical protein SclaA2_04483 [Streptomyces clavuligerus
ATCC 27064]
gi|294324576|gb|EFG06219.1| Membrane-flanked domain-containing protein [Streptomyces clavuligerus
ATCC 27064]
Length=201
Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/160 (45%), Positives = 94/160 (59%), Gaps = 4/160 (2%)
Query 20 LAEPAHRPSSQAPVMWALSASLG--WILPVIAQLVWWAVHPQPPWPHLAAAALTAVAMVV 77
L PAH S +A W ++L I V+A L W+ V P PW AAA + +
Sbjct 44 LRPPAHALSERAVGWWRARSALATALITGVLAVLGWF-VGPARPWLLAAAALALVLGALE 102
Query 78 HIGVVPLWRYRVHRWEISPQAVFTRTGWLVQERRITPISRVQTVDTYRGPMDRLFGLANV 137
+ VP WRYRVHRWE++ +AV RTG QE RI P+SR+QTVDT +GP++R F LA V
Sbjct 103 AL-TVPRWRYRVHRWEVTDEAVHVRTGAFWQEWRIAPMSRIQTVDTRQGPLERRFRLATV 161
Query 138 TVTTASSAGAVHIEALDTDVADRVVAQLTDIAALRGEDAT 177
VTTASS GA+ +E LD + A + +LT + DAT
Sbjct 162 VVTTASSKGALTLEGLDHEHAADLARRLTAMTRATPGDAT 201
Lambda K H
0.322 0.132 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 152280848256
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40