BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1228
Length=185
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608368|ref|NP_215744.1| lipoprotein LpqX [Mycobacterium tub... 373 5e-102
gi|339631295|ref|YP_004722937.1| hypothetical protein MAF_12470 ... 372 2e-101
gi|340626241|ref|YP_004744693.1| putative lipoprotein LPQX [Myco... 371 3e-101
gi|289569231|ref|ZP_06449458.1| lipoprotein lpqX [Mycobacterium ... 278 3e-73
gi|313658092|ref|ZP_07814972.1| lipoprotein lpqX [Mycobacterium ... 268 2e-70
gi|289745633|ref|ZP_06505011.1| lipoprotein lppQ [Mycobacterium ... 42.0 0.036
gi|340627352|ref|YP_004745804.1| putative lipoprotein LPPQ [Myco... 42.0 0.042
gi|15609478|ref|NP_216857.1| lipoprotein LppQ [Mycobacterium tub... 42.0 0.042
gi|148823542|ref|YP_001288296.1| lipoprotein lppQ [Mycobacterium... 42.0 0.043
gi|14209823|gb|AAK56857.1| VacA [Helicobacter pylori] 38.5 0.51
gi|14209829|gb|AAK56860.1| VacA [Helicobacter pylori] 36.6 1.5
gi|317014293|gb|ADU81729.1| vacuolating cytotoxin [Helicobacter ... 36.6 1.6
gi|302677438|ref|XP_003028402.1| hypothetical protein SCHCODRAFT... 36.6 1.6
gi|297380087|gb|ADI34974.1| Vacuolating cytotoxin [Helicobacter ... 36.6 1.7
gi|325997763|gb|ADZ49971.1| vacuolating cytotoxin [Helicobacter ... 36.6 1.8
gi|325996167|gb|ADZ51572.1| vacuolating cytotoxin [Helicobacter ... 36.6 1.9
gi|14209825|gb|AAK56858.1| VacA [Helicobacter pylori] 36.6 1.9
gi|2499108|sp|Q48245.1|VACA2_HELPY RecName: Full=Vacuolating cyt... 36.6 1.9
gi|188592963|emb|CAQ53114.1| C-terminal part vacuolating cytotox... 36.2 2.1
gi|282857245|ref|ZP_06266485.1| hypothetical protein HMPREF7215_... 36.2 2.1
gi|52693844|dbj|BAD51775.1| vacuolating cytotoxin A [Helicobacte... 36.2 2.2
gi|208434795|ref|YP_002266461.1| vacuolating cytotoxin A [Helico... 36.2 2.3
gi|14209827|gb|AAK56859.1| VacA [Helicobacter pylori] 35.8 2.9
gi|283780744|ref|YP_003371499.1| alpha/beta hydrolase fold-3 dom... 35.4 3.4
gi|310657282|gb|ADP02392.1| VacA [Helicobacter pylori] 35.4 3.4
gi|15611886|ref|NP_223537.1| vacuolating cytotoxin [Helicobacter... 35.4 4.0
gi|297616646|ref|YP_003701805.1| acyl-CoA dehydrogenase domain-c... 35.0 5.3
>gi|15608368|ref|NP_215744.1| lipoprotein LpqX [Mycobacterium tuberculosis H37Rv]
gi|15840672|ref|NP_335709.1| hypothetical protein MT1265 [Mycobacterium tuberculosis CDC1551]
gi|31792421|ref|NP_854914.1| putative lipoprotein LPQX [Mycobacterium bovis AF2122/97]
70 more sequence titles
Length=185
Score = 373 bits (958), Expect = 5e-102, Method: Compositional matrix adjust.
Identities = 185/185 (100%), Positives = 185/185 (100%), Gaps = 0/185 (0%)
Query 1 MSRQWHWLAATLLLITTAACSRPGTEEPDCPTKITLPPGATPTTTLDPRCIVRATTTGTA 60
MSRQWHWLAATLLLITTAACSRPGTEEPDCPTKITLPPGATPTTTLDPRCIVRATTTGTA
Sbjct 1 MSRQWHWLAATLLLITTAACSRPGTEEPDCPTKITLPPGATPTTTLDPRCIVRATTTGTA 60
Query 61 DGDAASRWTGTVRIAGFYASICNAVWDGNVSLAGKDELTGKATLILVETSCPGKVVAGEL 120
DGDAASRWTGTVRIAGFYASICNAVWDGNVSLAGKDELTGKATLILVETSCPGKVVAGEL
Sbjct 61 DGDAASRWTGTVRIAGFYASICNAVWDGNVSLAGKDELTGKATLILVETSCPGKVVAGEL 120
Query 121 VLKGNVGSDSLAITWAHPELPQRAFDLGAGQGTIRRSGDRAEGTFNSDMGGGTEFFLTWS 180
VLKGNVGSDSLAITWAHPELPQRAFDLGAGQGTIRRSGDRAEGTFNSDMGGGTEFFLTWS
Sbjct 121 VLKGNVGSDSLAITWAHPELPQRAFDLGAGQGTIRRSGDRAEGTFNSDMGGGTEFFLTWS 180
Query 181 LTMRN 185
LTMRN
Sbjct 181 LTMRN 185
>gi|339631295|ref|YP_004722937.1| hypothetical protein MAF_12470 [Mycobacterium africanum GM041182]
gi|339330651|emb|CCC26319.1| putative lipoprotein LPQX [Mycobacterium africanum GM041182]
Length=185
Score = 372 bits (954), Expect = 2e-101, Method: Compositional matrix adjust.
Identities = 184/185 (99%), Positives = 184/185 (99%), Gaps = 0/185 (0%)
Query 1 MSRQWHWLAATLLLITTAACSRPGTEEPDCPTKITLPPGATPTTTLDPRCIVRATTTGTA 60
MSRQWHWLAATLLLITTAACSRPGTEEPDCPTKITLPPGATPTTTLDPRCIVRATTTGTA
Sbjct 1 MSRQWHWLAATLLLITTAACSRPGTEEPDCPTKITLPPGATPTTTLDPRCIVRATTTGTA 60
Query 61 DGDAASRWTGTVRIAGFYASICNAVWDGNVSLAGKDELTGKATLILVETSCPGKVVAGEL 120
DGDAASRWTGTVRIAGFYASICNAVWDGNVSLAGKDELTGKATLILVETSCPGKVVAGEL
Sbjct 61 DGDAASRWTGTVRIAGFYASICNAVWDGNVSLAGKDELTGKATLILVETSCPGKVVAGEL 120
Query 121 VLKGNVGSDSLAITWAHPELPQRAFDLGAGQGTIRRSGDRAEGTFNSDMGGGTEFFLTWS 180
VLKGNVGSDSLAITWAHPELPQRAFDLGAGQGTIRRSGDRAEGTFNSDMGGGTEFFLTWS
Sbjct 121 VLKGNVGSDSLAITWAHPELPQRAFDLGAGQGTIRRSGDRAEGTFNSDMGGGTEFFLTWS 180
Query 181 LTMRN 185
L MRN
Sbjct 181 LKMRN 185
>gi|340626241|ref|YP_004744693.1| putative lipoprotein LPQX [Mycobacterium canettii CIPT 140010059]
gi|340004431|emb|CCC43574.1| putative lipoprotein LPQX [Mycobacterium canettii CIPT 140010059]
Length=185
Score = 371 bits (952), Expect = 3e-101, Method: Compositional matrix adjust.
Identities = 184/185 (99%), Positives = 184/185 (99%), Gaps = 0/185 (0%)
Query 1 MSRQWHWLAATLLLITTAACSRPGTEEPDCPTKITLPPGATPTTTLDPRCIVRATTTGTA 60
MSRQWHWLAATLLLITTAACSRPGTEEPDCPTKITLPPGATPTTTLDPRCIVRATTTGTA
Sbjct 1 MSRQWHWLAATLLLITTAACSRPGTEEPDCPTKITLPPGATPTTTLDPRCIVRATTTGTA 60
Query 61 DGDAASRWTGTVRIAGFYASICNAVWDGNVSLAGKDELTGKATLILVETSCPGKVVAGEL 120
DGDAASRWTGTVRIAG YASICNAVWDGNVSLAGKDELTGKATLILVETSCPGKVVAGEL
Sbjct 61 DGDAASRWTGTVRIAGLYASICNAVWDGNVSLAGKDELTGKATLILVETSCPGKVVAGEL 120
Query 121 VLKGNVGSDSLAITWAHPELPQRAFDLGAGQGTIRRSGDRAEGTFNSDMGGGTEFFLTWS 180
VLKGNVGSDSLAITWAHPELPQRAFDLGAGQGTIRRSGDRAEGTFNSDMGGGTEFFLTWS
Sbjct 121 VLKGNVGSDSLAITWAHPELPQRAFDLGAGQGTIRRSGDRAEGTFNSDMGGGTEFFLTWS 180
Query 181 LTMRN 185
LTMRN
Sbjct 181 LTMRN 185
>gi|289569231|ref|ZP_06449458.1| lipoprotein lpqX [Mycobacterium tuberculosis T17]
gi|289542985|gb|EFD46633.1| lipoprotein lpqX [Mycobacterium tuberculosis T17]
Length=157
Score = 278 bits (711), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 138/139 (99%), Positives = 138/139 (99%), Gaps = 0/139 (0%)
Query 1 MSRQWHWLAATLLLITTAACSRPGTEEPDCPTKITLPPGATPTTTLDPRCIVRATTTGTA 60
MSRQWHWLAATLLLITTAACSRPGTEEPDCPTKITLPPGATPTTTLDPRCIVRATTTGTA
Sbjct 1 MSRQWHWLAATLLLITTAACSRPGTEEPDCPTKITLPPGATPTTTLDPRCIVRATTTGTA 60
Query 61 DGDAASRWTGTVRIAGFYASICNAVWDGNVSLAGKDELTGKATLILVETSCPGKVVAGEL 120
DGDAASRWTGTVRIAGFYASICNAVWDGNVSLAGKDELTGKATLILVETSCPGKVVAGEL
Sbjct 61 DGDAASRWTGTVRIAGFYASICNAVWDGNVSLAGKDELTGKATLILVETSCPGKVVAGEL 120
Query 121 VLKGNVGSDSLAITWAHPE 139
VLKGNVGSDSLAITWAHP
Sbjct 121 VLKGNVGSDSLAITWAHPN 139
>gi|313658092|ref|ZP_07814972.1| lipoprotein lpqX [Mycobacterium tuberculosis KZN V2475]
gi|323720286|gb|EGB29384.1| lipoprotein lpqX [Mycobacterium tuberculosis CDC1551A]
gi|339294215|gb|AEJ46326.1| lipoprotein LpqX [Mycobacterium tuberculosis CCDC5079]
gi|339297855|gb|AEJ49965.1| lipoprotein LpqX [Mycobacterium tuberculosis CCDC5180]
Length=134
Score = 268 bits (686), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 133/134 (99%), Positives = 134/134 (100%), Gaps = 0/134 (0%)
Query 52 VRATTTGTADGDAASRWTGTVRIAGFYASICNAVWDGNVSLAGKDELTGKATLILVETSC 111
+RATTTGTADGDAASRWTGTVRIAGFYASICNAVWDGNVSLAGKDELTGKATLILVETSC
Sbjct 1 MRATTTGTADGDAASRWTGTVRIAGFYASICNAVWDGNVSLAGKDELTGKATLILVETSC 60
Query 112 PGKVVAGELVLKGNVGSDSLAITWAHPELPQRAFDLGAGQGTIRRSGDRAEGTFNSDMGG 171
PGKVVAGELVLKGNVGSDSLAITWAHPELPQRAFDLGAGQGTIRRSGDRAEGTFNSDMGG
Sbjct 61 PGKVVAGELVLKGNVGSDSLAITWAHPELPQRAFDLGAGQGTIRRSGDRAEGTFNSDMGG 120
Query 172 GTEFFLTWSLTMRN 185
GTEFFLTWSLTMRN
Sbjct 121 GTEFFLTWSLTMRN 134
>gi|289745633|ref|ZP_06505011.1| lipoprotein lppQ [Mycobacterium tuberculosis 02_1987]
gi|289686161|gb|EFD53649.1| lipoprotein lppQ [Mycobacterium tuberculosis 02_1987]
Length=139
Score = 42.0 bits (97), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 36/116 (32%), Positives = 55/116 (48%), Gaps = 19/116 (16%)
Query 8 LAATLLLITTAACSRPG--TEEPDCPTKITLPPGATPTTTLDPRCIVRATTTGTADGDAA 65
+AA L+L+ +AC R T EP CPT+ A +TT DP C+VRAT +G
Sbjct 20 VAAPLMLLGLSACGRSAGKTSEPTCPTEPI--DAADSSTTPDPSCVVRATAI-NGNGSRI 76
Query 66 SRWTGTVRIAG------------FYASICNAVWDGNVSLAGKDELTGKATLILVET 109
WTG+ A F+A++ V +G +S G + +A ++ + T
Sbjct 77 QTWTGSYDAAATQSGGVCGGTCNFHATVRFTVDEGQIS--GSVDQVYQAAMVAIAT 130
>gi|340627352|ref|YP_004745804.1| putative lipoprotein LPPQ [Mycobacterium canettii CIPT 140010059]
gi|340005542|emb|CCC44704.1| putative conserved lipoprotein LPPQ [Mycobacterium canettii CIPT
140010059]
Length=139
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 36/116 (32%), Positives = 55/116 (48%), Gaps = 19/116 (16%)
Query 8 LAATLLLITTAACSRPG--TEEPDCPTKITLPPGATPTTTLDPRCIVRATTTGTADGDAA 65
+AA L+L+ +AC R T EP CPT+ A +TT DP C+VRAT +G
Sbjct 20 VAAPLMLLGLSACGRSADKTSEPTCPTEPI--DAADSSTTPDPSCVVRATEI-NGNGSRI 76
Query 66 SRWTGTVRIAG------------FYASICNAVWDGNVSLAGKDELTGKATLILVET 109
WTG+ A F+A++ V +G +S G + +A ++ + T
Sbjct 77 QTWTGSYDAAATQSGGVCGGTCNFHATVRFTVDEGQIS--GSVDQVYQAAMVAIAT 130
>gi|15609478|ref|NP_216857.1| lipoprotein LppQ [Mycobacterium tuberculosis H37Rv]
gi|15841848|ref|NP_336885.1| putative lipoprotein [Mycobacterium tuberculosis CDC1551]
gi|31793526|ref|NP_856019.1| lipoprotein LppQ [Mycobacterium bovis AF2122/97]
66 more sequence titles
Length=139
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 36/116 (32%), Positives = 55/116 (48%), Gaps = 19/116 (16%)
Query 8 LAATLLLITTAACSRPG--TEEPDCPTKITLPPGATPTTTLDPRCIVRATTTGTADGDAA 65
+AA L+L+ +AC R T EP CPT+ A +TT DP C+VRAT +G
Sbjct 20 VAAPLMLLGLSACGRSAGKTSEPTCPTEPI--DAADSSTTPDPSCVVRATEI-NGNGSRI 76
Query 66 SRWTGTVRIAG------------FYASICNAVWDGNVSLAGKDELTGKATLILVET 109
WTG+ A F+A++ V +G +S G + +A ++ + T
Sbjct 77 QTWTGSYDAAATQSGGVCGGTCNFHATVRFTVDEGQIS--GSVDQVYQAAMVAIAT 130
>gi|148823542|ref|YP_001288296.1| lipoprotein lppQ [Mycobacterium tuberculosis F11]
gi|167969897|ref|ZP_02552174.1| lipoprotein lppQ [Mycobacterium tuberculosis H37Ra]
gi|253798585|ref|YP_003031586.1| lipoprotein lppQ [Mycobacterium tuberculosis KZN 1435]
7 more sequence titles
Length=144
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 36/116 (32%), Positives = 55/116 (48%), Gaps = 19/116 (16%)
Query 8 LAATLLLITTAACSRPG--TEEPDCPTKITLPPGATPTTTLDPRCIVRATTTGTADGDAA 65
+AA L+L+ +AC R T EP CPT+ A +TT DP C+VRAT +G
Sbjct 25 VAAPLMLLGLSACGRSAGKTSEPTCPTEPI--DAADSSTTPDPSCVVRATEI-NGNGSRI 81
Query 66 SRWTGTVRIAG------------FYASICNAVWDGNVSLAGKDELTGKATLILVET 109
WTG+ A F+A++ V +G +S G + +A ++ + T
Sbjct 82 QTWTGSYDAAATQSGGVCGGTCNFHATVRFTVDEGQIS--GSVDQVYQAAMVAIAT 135
>gi|14209823|gb|AAK56857.1| VacA [Helicobacter pylori]
Length=1287
Score = 38.5 bits (88), Expect = 0.51, Method: Composition-based stats.
Identities = 39/148 (27%), Positives = 63/148 (43%), Gaps = 20/148 (13%)
Query 32 TKITLPPGATPTTTLDPRCIVRATTTGTAD-----GDAASRWTGTVRIAGFYASICNAVW 86
T++ PP T T +P ++ G D ++ GT+R+ GF AS+
Sbjct 359 TEVINPPNNTQKTETEPTQVIDGPFAGGKDTVVNIDRINTKADGTIRVGGFKASLTTNAA 418
Query 87 DGNVSLAGKDELTGKAT--LILVETSCPGKVVAGELVLKGNVGSDSLAITWAHPELPQRA 144
N+ G + L+ +A+ +LVE V G L + VG +LA + A+
Sbjct 419 HLNIGKGGVN-LSNQASGRTLLVENLTGNITVDGPLRVNNQVGGYALAGSSAN------- 470
Query 145 FDLGAGQGTIRRSGDRAEGTFNSDMGGG 172
F+ AG+ T TFN+D+ G
Sbjct 471 FEFKAGEDT-----KNGTATFNNDISLG 493
>gi|14209829|gb|AAK56860.1| VacA [Helicobacter pylori]
Length=1289
Score = 36.6 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 38/149 (26%), Positives = 62/149 (42%), Gaps = 22/149 (14%)
Query 32 TKITLPPGATPTTTLDPRCIVRATTTGTAD-----GDAASRWTGTVRIAGFYASICNAVW 86
T++ PP T T +P ++ G D ++ GT+R+ GF AS+
Sbjct 359 TEVINPPNNTQKTETEPTQVIDGPFAGGKDTVVNIDRINTKSDGTIRVGGFKASLTTNAA 418
Query 87 DGNVSLAG---KDELTGKATLILVETSCPGKVVAGELVLKGNVGSDSLAITWAHPELPQR 143
N+ G ++ +G++ +LVE V G L + VG +LA + A+
Sbjct 419 HLNIGKGGVNLSNQASGRS--LLVENLTGNITVDGPLRVNNQVGGYALAGSSAN------ 470
Query 144 AFDLGAGQGTIRRSGDRAEGTFNSDMGGG 172
F+ AG T TFN+D+ G
Sbjct 471 -FEFKAGVDT-----KNGTATFNNDISLG 493
>gi|317014293|gb|ADU81729.1| vacuolating cytotoxin [Helicobacter pylori Gambia94/24]
Length=1288
Score = 36.6 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 39/148 (27%), Positives = 62/148 (42%), Gaps = 20/148 (13%)
Query 32 TKITLPPGATPTTTLDPRCIVRATTTGTAD-----GDAASRWTGTVRIAGFYASICNAVW 86
T++ PP T T +P ++ G D ++ GT+R+ GF AS+
Sbjct 359 TEVINPPNNTQKTETEPTQVIDGPFAGGKDTVVNIDRINTKADGTIRVGGFKASLTTNAA 418
Query 87 DGNVSLAGKDELTGKAT--LILVETSCPGKVVAGELVLKGNVGSDSLAITWAHPELPQRA 144
N+ G + L+ +A+ +LVE V G L + VG +LA + A+
Sbjct 419 HLNIGKGGVN-LSNQASGRTLLVENLTGNITVDGPLRVNNQVGGYALAGSSAN------- 470
Query 145 FDLGAGQGTIRRSGDRAEGTFNSDMGGG 172
F+ AG T TFN+D+ G
Sbjct 471 FEFKAGVDT-----KNGTATFNNDISLG 493
>gi|302677438|ref|XP_003028402.1| hypothetical protein SCHCODRAFT_112778 [Schizophyllum commune
H4-8]
gi|300102090|gb|EFI93499.1| hypothetical protein SCHCODRAFT_112778 [Schizophyllum commune
H4-8]
Length=1976
Score = 36.6 bits (83), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/94 (30%), Positives = 44/94 (47%), Gaps = 29/94 (30%)
Query 67 RWTGTVRIAGFYASICNAVW----------------DGNVS------------LAGKDEL 98
+W + R YA+IC+A++ G+VS + G D
Sbjct 130 KWHFSGRKGWHYAAICDAIFAFADRTDTGTSALLAFPGSVSYMYDLWWYMMHVIGGVDPA 189
Query 99 TG-KATLILVETSCPGKVVAGELVLKGNVGSDSL 131
G ATL+L+ + P + VAGE+V KG++G D+L
Sbjct 190 DGIVATLVLLSSGAPNQQVAGEIVAKGSLGVDAL 223
>gi|297380087|gb|ADI34974.1| Vacuolating cytotoxin [Helicobacter pylori v225d]
Length=1293
Score = 36.6 bits (83), Expect = 1.7, Method: Composition-based stats.
Identities = 36/161 (23%), Positives = 69/161 (43%), Gaps = 21/161 (13%)
Query 17 TAACSRPGTEEPDCPTKITLPPGATPTTTLDPRCIVRATTTGTADGDAA-----SRWTGT 71
+A + G+ + + T++ PP + T P ++ G D ++ GT
Sbjct 351 SAKNDKQGSSQDNSNTQVINPPNSGQKTETQPTQVIDGPFAGAKDTAVTIDSLNTKSDGT 410
Query 72 VRIAGFYASICNAVWDGNVSLAG---KDELTGKATLILVETSCPGKVVAGELVLKGNVGS 128
+++ GF AS+ + N+ G ++ +G++ +LVE V G L + G G
Sbjct 411 IKVGGFKASLTTNAANLNIGKGGVNLSNQASGRS--LLVENLTGNITVNGALKVNGQAGG 468
Query 129 DSLAITWAHPELPQRAFDLGAG----QGTIRRSGDRAEGTF 165
+L+ + A +F+ AG GTI + + + G F
Sbjct 469 YALSGSSA-------SFEFKAGVDTNNGTIAFNNNISLGRF 502
>gi|325997763|gb|ADZ49971.1| vacuolating cytotoxin [Helicobacter pylori 2017]
Length=1288
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 39/148 (27%), Positives = 62/148 (42%), Gaps = 20/148 (13%)
Query 32 TKITLPPGATPTTTLDPRCIVRATTTGTAD-----GDAASRWTGTVRIAGFYASICNAVW 86
T++ PP T T +P ++ G D ++ GT+R+ GF AS+
Sbjct 359 TEVINPPNNTQKTETEPTQVIDGPFAGGKDTVVNIDRINTKADGTIRVGGFKASLTTNAA 418
Query 87 DGNVSLAGKDELTGKAT--LILVETSCPGKVVAGELVLKGNVGSDSLAITWAHPELPQRA 144
N+ G + L+ +A+ +LVE V G L + VG +LA + A+
Sbjct 419 HLNIGKGGVN-LSNQASGRTLLVENLTGNITVDGPLRVNNQVGGYALAGSSAN------- 470
Query 145 FDLGAGQGTIRRSGDRAEGTFNSDMGGG 172
F+ AG T TFN+D+ G
Sbjct 471 FEFKAGVDT-----KNGTATFNNDISLG 493
>gi|325996167|gb|ADZ51572.1| vacuolating cytotoxin [Helicobacter pylori 2018]
Length=1288
Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 39/148 (27%), Positives = 62/148 (42%), Gaps = 20/148 (13%)
Query 32 TKITLPPGATPTTTLDPRCIVRATTTGTAD-----GDAASRWTGTVRIAGFYASICNAVW 86
T++ PP T T +P ++ G D ++ GT+R+ GF AS+
Sbjct 359 TEVINPPNNTQKTETEPTQVIDGPFAGGKDTVVNIDRINTKADGTIRVGGFKASLTTNAA 418
Query 87 DGNVSLAGKDELTGKAT--LILVETSCPGKVVAGELVLKGNVGSDSLAITWAHPELPQRA 144
N+ G + L+ +A+ +LVE V G L + VG +LA + A+
Sbjct 419 HLNIGKGGVN-LSNQASGRTLLVENLTGNITVDGPLRVNNQVGGYALAGSSAN------- 470
Query 145 FDLGAGQGTIRRSGDRAEGTFNSDMGGG 172
F+ AG T TFN+D+ G
Sbjct 471 FEFKAGVDT-----KNGTATFNNDISLG 493
>gi|14209825|gb|AAK56858.1| VacA [Helicobacter pylori]
Length=1288
Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 39/148 (27%), Positives = 62/148 (42%), Gaps = 20/148 (13%)
Query 32 TKITLPPGATPTTTLDPRCIVRATTTGTAD-----GDAASRWTGTVRIAGFYASICNAVW 86
T++ PP T T +P ++ G D ++ GT+R+ GF AS+
Sbjct 359 TEVINPPNNTQKTETEPTQVIDGPFAGGKDTVVNIDRINTKADGTIRVGGFKASLTTNAA 418
Query 87 DGNVSLAGKDELTGKAT--LILVETSCPGKVVAGELVLKGNVGSDSLAITWAHPELPQRA 144
N+ G + L+ +A+ +LVE V G L + VG +LA + A+
Sbjct 419 HLNIGKGGVN-LSNQASGRTLLVENLTGNITVDGPLRVNNQVGGYALAGSSAN------- 470
Query 145 FDLGAGQGTIRRSGDRAEGTFNSDMGGG 172
F+ AG T TFN+D+ G
Sbjct 471 FEFKAGVDT-----KNGTATFNNDISLG 493
>gi|2499108|sp|Q48245.1|VACA2_HELPY RecName: Full=Vacuolating cytotoxin autotransporter; Contains:
RecName: Full=Vacuolating cytotoxin; Contains: RecName: Full=Vacuolating
cytotoxin translocator; Flags: Precursor
gi|471729|gb|AAA17657.1| vacuolating cytotoxin [Helicobacter pylori]
Length=1287
Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 38/148 (26%), Positives = 63/148 (43%), Gaps = 20/148 (13%)
Query 32 TKITLPPGATPTTTLDPRCIVRATTTGTAD-----GDAASRWTGTVRIAGFYASICNAVW 86
T++ PP +T T + P ++ G D ++ GT+++ GF AS+
Sbjct 358 TQVINPPNSTQKTEVQPTQVIDGPFAGGKDTVVNIDRINTKADGTIKVGGFKASLTTNAA 417
Query 87 DGNVSLAGKDELTGKAT--LILVETSCPGKVVAGELVLKGNVGSDSLAITWAHPELPQRA 144
N+ G + L+ +A+ +LVE V G L + VG +LA + A+
Sbjct 418 HLNIGKGGVN-LSNQASGRTLLVENLTGNITVDGPLRVNNQVGGYALAGSSAN------- 469
Query 145 FDLGAGQGTIRRSGDRAEGTFNSDMGGG 172
F+ AG T TFN+D+ G
Sbjct 470 FEFKAGVDT-----KNGTATFNNDISLG 492
>gi|188592963|emb|CAQ53114.1| C-terminal part vacuolating cytotoxin A (vacA-C) [Helicobacter
pylori G27]
Length=685
Score = 36.2 bits (82), Expect = 2.1, Method: Composition-based stats.
Identities = 41/151 (28%), Positives = 66/151 (44%), Gaps = 26/151 (17%)
Query 32 TKITLPPGATPTTTLDPRCIVRATTTGTAD-----GDAASRWTGTVRIAGFYASI-CNA- 84
T++ PP +T T + P ++ G D + GT+R+ GF AS+ NA
Sbjct 39 TQVINPPNSTQKTEIQPTQVIDGPFAGGKDTVVNINRINTNADGTIRVGGFKASLTTNAA 98
Query 85 ---VWDGNVSLAGKDELTGKATLILVETSCPGKVVAGELVLKGNVGSDSLAITWAHPELP 141
+ G V+L+ ++ +G+ +LVE V G L + VG +LA + A+
Sbjct 99 HLHIGKGGVNLS--NQASGRT--LLVENLTGNITVDGPLRVNNQVGGYALAGSSAN---- 150
Query 142 QRAFDLGAGQGTIRRSGDRAEGTFNSDMGGG 172
F+ AG T TFN+D+ G
Sbjct 151 ---FEFKAGVDT-----KNGTATFNNDISLG 173
>gi|282857245|ref|ZP_06266485.1| hypothetical protein HMPREF7215_2694 [Pyramidobacter piscolens
W5455]
gi|282584895|gb|EFB90223.1| hypothetical protein HMPREF7215_2694 [Pyramidobacter piscolens
W5455]
Length=1071
Score = 36.2 bits (82), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/105 (28%), Positives = 48/105 (46%), Gaps = 12/105 (11%)
Query 71 TVRIAGFYASICNAVWDGNVSLAGKDELTGKATLILVETSCPGKVVAGELVLKGNVGSDS 130
TVR+ S+ +V DG VSLA E+ G + + P L+ V +
Sbjct 712 TVRLDALDPSLA-SVADGRVSLAVHSEVDGSGVSFTGQAASP-------LITAAQVPVSN 763
Query 131 LAITWAHPE----LPQRAFDLGAGQGTIRRSGDRAEGTFNSDMGG 171
+ I +A + +P F+LG G ++ GD A+GT++ + G
Sbjct 764 VLIPFAFRQNKVHIPDGQFELGGGAFHVKADGDVAKGTYSVQLNG 808
>gi|52693844|dbj|BAD51775.1| vacuolating cytotoxin A [Helicobacter pylori]
gi|52693846|dbj|BAD51776.1| vacuolating cytotoxin A [Helicobacter pylori]
Length=1295
Score = 36.2 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 39/163 (24%), Positives = 67/163 (42%), Gaps = 20/163 (12%)
Query 17 TAACSRPGTEEPDCPTKITLPPGATPTTTLDPRCIVRATTTGTAD-----GDAASRWTGT 71
+A + + + + T++ PP + T + P ++ G D + GT
Sbjct 351 SAKNDKQNSAQNNSNTQVINPPNSAQKTEIQPTQVIDGPFAGGKDTVVNIDRINTNADGT 410
Query 72 VRIAGFYASICNAVWDGNVSLAGKDELTGKAT--LILVETSCPGKVVAGELVLKGNVGSD 129
+R+ GF AS+ N+ G + L+ +A+ +LVE V G L + VG
Sbjct 411 IRVGGFKASLTTNAAHLNIGKGGVN-LSNQASGRTLLVENLTGNITVDGPLRVNNQVGGY 469
Query 130 SLAITWAHPELPQRAFDLGAGQGTIRRSGDRAEGTFNSDMGGG 172
+LA + A+ F+ AG T TFN+D+ G
Sbjct 470 ALAGSSAN-------FEFKAGTDT-----KNGTATFNNDISLG 500
>gi|208434795|ref|YP_002266461.1| vacuolating cytotoxin A [Helicobacter pylori G27]
gi|208432724|gb|ACI27595.1| vacuolating cytotoxin A [Helicobacter pylori G27]
Length=1294
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 41/151 (28%), Positives = 66/151 (44%), Gaps = 26/151 (17%)
Query 32 TKITLPPGATPTTTLDPRCIVRATTTGTAD-----GDAASRWTGTVRIAGFYASI-CNA- 84
T++ PP +T T + P ++ G D + GT+R+ GF AS+ NA
Sbjct 366 TQVINPPNSTQKTEIQPTQVIDGPFAGGKDTVVNINRINTNADGTIRVGGFKASLTTNAA 425
Query 85 ---VWDGNVSLAGKDELTGKATLILVETSCPGKVVAGELVLKGNVGSDSLAITWAHPELP 141
+ G V+L+ ++ +G+ +LVE V G L + VG +LA + A+
Sbjct 426 HLHIGKGGVNLS--NQASGRT--LLVENLTGNITVDGPLRVNNQVGGYALAGSSAN---- 477
Query 142 QRAFDLGAGQGTIRRSGDRAEGTFNSDMGGG 172
F+ AG T TFN+D+ G
Sbjct 478 ---FEFKAGVDT-----KNGTATFNNDISLG 500
>gi|14209827|gb|AAK56859.1| VacA [Helicobacter pylori]
Length=1287
Score = 35.8 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 37/149 (25%), Positives = 62/149 (42%), Gaps = 22/149 (14%)
Query 32 TKITLPPGATPTTTLDPRCIVRATTTGTAD-----GDAASRWTGTVRIAGFYASICNAVW 86
T++ PP T T +P ++ G D ++ GT+R+ GF AS+
Sbjct 359 TEVINPPNNTQKTKTEPTQVIDGPFAGGKDTVVNIDRINTKADGTIRVGGFKASLTTNAA 418
Query 87 DGNVSLAG---KDELTGKATLILVETSCPGKVVAGELVLKGNVGSDSLAITWAHPELPQR 143
N+ G ++ +G++ ++VE V G L + VG +LA + A+
Sbjct 419 HLNIGKGGVNLSNQASGRS--LIVENLTGNITVDGPLRVNNQVGGYALAGSSAN------ 470
Query 144 AFDLGAGQGTIRRSGDRAEGTFNSDMGGG 172
F+ AG T TFN+D+ G
Sbjct 471 -FEFKAGVDT-----KNGTATFNNDISLG 493
>gi|283780744|ref|YP_003371499.1| alpha/beta hydrolase fold-3 domain-containing protein [Pirellula
staleyi DSM 6068]
gi|283439197|gb|ADB17639.1| Alpha/beta hydrolase fold-3 domain protein [Pirellula staleyi
DSM 6068]
Length=301
Score = 35.4 bits (80), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/87 (29%), Positives = 43/87 (50%), Gaps = 19/87 (21%)
Query 13 LLITTAACSR-PGTEEPDCPTKITLPPGAT---------------PTTTLDPR-CIVRAT 55
LL++ ++C+R G ++P+ P +T PG T PT ++PR CI+
Sbjct 18 LLLSASSCARAQGAKQPEVPDGVTYEPGVTYCKVGDIELKLDLARPTKVIEPRPCILMIH 77
Query 56 TTGTADGDAASRWTGTVRIA--GFYAS 80
G GD ++ TV++A G+ A+
Sbjct 78 GGGWRGGDRSAHSDATVKLADQGYVAA 104
>gi|310657282|gb|ADP02392.1| VacA [Helicobacter pylori]
Length=961
Score = 35.4 bits (80), Expect = 3.4, Method: Composition-based stats.
Identities = 38/148 (26%), Positives = 63/148 (43%), Gaps = 20/148 (13%)
Query 32 TKITLPPGATPTTTLDPRCIVRATTTGTAD-----GDAASRWTGTVRIAGFYASICNAVW 86
T++ PP T T + P ++ + G D ++ GT+++ GF AS+
Sbjct 356 TEVINPPNNTQKTEIQPTQVIDGSFAGGKDTVVNIDRINTKADGTIKVGGFKASLTTNAA 415
Query 87 DGNVSLAGKDELTGKAT--LILVETSCPGKVVAGELVLKGNVGSDSLAITWAHPELPQRA 144
N+ G + L+ +A+ +LVE V G L + VG +LA + A+
Sbjct 416 HLNIGKGGVN-LSNQASGRTLLVENLTGNITVDGPLRVNNQVGGYALAGSSAN------- 467
Query 145 FDLGAGQGTIRRSGDRAEGTFNSDMGGG 172
F+ AG T TFN+D+ G
Sbjct 468 FEFKAGVDT-----KNGTATFNNDISLG 490
>gi|15611886|ref|NP_223537.1| vacuolating cytotoxin [Helicobacter pylori J99]
gi|12230793|sp|Q9ZKW5.1|VACA_HELPJ RecName: Full=Vacuolating cytotoxin autotransporter; Contains:
RecName: Full=Vacuolating cytotoxin; Contains: RecName: Full=Vacuolating
cytotoxin translocator; Flags: Precursor
gi|4155390|gb|AAD06400.1| vacuolating cytotoxin [Helicobacter pylori J99]
Length=1288
Score = 35.4 bits (80), Expect = 4.0, Method: Composition-based stats.
Identities = 38/148 (26%), Positives = 62/148 (42%), Gaps = 20/148 (13%)
Query 32 TKITLPPGATPTTTLDPRCIVRATTTGTADG-----DAASRWTGTVRIAGFYASICNAVW 86
T++ PP T T +P ++ G D ++ GT+++ GF AS+
Sbjct 359 TEVINPPNNTQKTETEPTQVIDGPFAGGKDTVVNIFHLNTKADGTIKVGGFKASLTTNAA 418
Query 87 DGNVSLAGKDELTGKAT--LILVETSCPGKVVAGELVLKGNVGSDSLAITWAHPELPQRA 144
N+ G + L+ +A+ +LVE V G L + VG +LA + A+
Sbjct 419 HLNIGKGGVN-LSNQASGRTLLVENLTGNITVDGPLRVNNQVGGYALAGSSAN------- 470
Query 145 FDLGAGQGTIRRSGDRAEGTFNSDMGGG 172
F+ AG T TFN+D+ G
Sbjct 471 FEFKAGVDT-----KNGTATFNNDISLG 493
>gi|297616646|ref|YP_003701805.1| acyl-CoA dehydrogenase domain-containing protein [Syntrophothermus
lipocalidus DSM 12680]
gi|297144483|gb|ADI01240.1| acyl-CoA dehydrogenase domain protein [Syntrophothermus lipocalidus
DSM 12680]
Length=379
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 10/100 (10%)
Query 42 PTTTLDPRCIVRATTTGTADGDAASRWTGTVRIAGFYASICNAVWDGNVSLAGKDELTGK 101
P T DP+ I TTT DG+ GT R I N + G V L +D+ GK
Sbjct 127 PGTGSDPKQI---TTTAVRDGNHFV-INGTKRF------ISNGTYPGPVVLFARDQENGK 176
Query 102 ATLILVETSCPGKVVAGELVLKGNVGSDSLAITWAHPELP 141
T +VE C G V+ G G D + I + +P
Sbjct 177 ITAFIVEKFCEGYSVSKPWEKVGWHGGDLVDIYLKNVRIP 216
Lambda K H
0.317 0.133 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 174138591420
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40