BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1228

Length=185
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15608368|ref|NP_215744.1|  lipoprotein LpqX [Mycobacterium tub...   373    5e-102
gi|339631295|ref|YP_004722937.1|  hypothetical protein MAF_12470 ...   372    2e-101
gi|340626241|ref|YP_004744693.1|  putative lipoprotein LPQX [Myco...   371    3e-101
gi|289569231|ref|ZP_06449458.1|  lipoprotein lpqX [Mycobacterium ...   278    3e-73 
gi|313658092|ref|ZP_07814972.1|  lipoprotein lpqX [Mycobacterium ...   268    2e-70 
gi|289745633|ref|ZP_06505011.1|  lipoprotein lppQ [Mycobacterium ...  42.0    0.036 
gi|340627352|ref|YP_004745804.1|  putative lipoprotein LPPQ [Myco...  42.0    0.042 
gi|15609478|ref|NP_216857.1|  lipoprotein LppQ [Mycobacterium tub...  42.0    0.042 
gi|148823542|ref|YP_001288296.1|  lipoprotein lppQ [Mycobacterium...  42.0    0.043 
gi|14209823|gb|AAK56857.1|  VacA [Helicobacter pylori]                38.5    0.51  
gi|14209829|gb|AAK56860.1|  VacA [Helicobacter pylori]                36.6    1.5   
gi|317014293|gb|ADU81729.1|  vacuolating cytotoxin [Helicobacter ...  36.6    1.6   
gi|302677438|ref|XP_003028402.1|  hypothetical protein SCHCODRAFT...  36.6    1.6   
gi|297380087|gb|ADI34974.1|  Vacuolating cytotoxin [Helicobacter ...  36.6    1.7   
gi|325997763|gb|ADZ49971.1|  vacuolating cytotoxin [Helicobacter ...  36.6    1.8   
gi|325996167|gb|ADZ51572.1|  vacuolating cytotoxin [Helicobacter ...  36.6    1.9   
gi|14209825|gb|AAK56858.1|  VacA [Helicobacter pylori]                36.6    1.9   
gi|2499108|sp|Q48245.1|VACA2_HELPY  RecName: Full=Vacuolating cyt...  36.6    1.9   
gi|188592963|emb|CAQ53114.1|  C-terminal part vacuolating cytotox...  36.2    2.1   
gi|282857245|ref|ZP_06266485.1|  hypothetical protein HMPREF7215_...  36.2    2.1   
gi|52693844|dbj|BAD51775.1|  vacuolating cytotoxin A [Helicobacte...  36.2    2.2   
gi|208434795|ref|YP_002266461.1|  vacuolating cytotoxin A [Helico...  36.2    2.3   
gi|14209827|gb|AAK56859.1|  VacA [Helicobacter pylori]                35.8    2.9   
gi|283780744|ref|YP_003371499.1|  alpha/beta hydrolase fold-3 dom...  35.4    3.4   
gi|310657282|gb|ADP02392.1|  VacA [Helicobacter pylori]               35.4    3.4   
gi|15611886|ref|NP_223537.1|  vacuolating cytotoxin [Helicobacter...  35.4    4.0   
gi|297616646|ref|YP_003701805.1|  acyl-CoA dehydrogenase domain-c...  35.0    5.3   


>gi|15608368|ref|NP_215744.1| lipoprotein LpqX [Mycobacterium tuberculosis H37Rv]
 gi|15840672|ref|NP_335709.1| hypothetical protein MT1265 [Mycobacterium tuberculosis CDC1551]
 gi|31792421|ref|NP_854914.1| putative lipoprotein LPQX [Mycobacterium bovis AF2122/97]
 70 more sequence titles
 Length=185

 Score =  373 bits (958),  Expect = 5e-102, Method: Compositional matrix adjust.
 Identities = 185/185 (100%), Positives = 185/185 (100%), Gaps = 0/185 (0%)

Query  1    MSRQWHWLAATLLLITTAACSRPGTEEPDCPTKITLPPGATPTTTLDPRCIVRATTTGTA  60
            MSRQWHWLAATLLLITTAACSRPGTEEPDCPTKITLPPGATPTTTLDPRCIVRATTTGTA
Sbjct  1    MSRQWHWLAATLLLITTAACSRPGTEEPDCPTKITLPPGATPTTTLDPRCIVRATTTGTA  60

Query  61   DGDAASRWTGTVRIAGFYASICNAVWDGNVSLAGKDELTGKATLILVETSCPGKVVAGEL  120
            DGDAASRWTGTVRIAGFYASICNAVWDGNVSLAGKDELTGKATLILVETSCPGKVVAGEL
Sbjct  61   DGDAASRWTGTVRIAGFYASICNAVWDGNVSLAGKDELTGKATLILVETSCPGKVVAGEL  120

Query  121  VLKGNVGSDSLAITWAHPELPQRAFDLGAGQGTIRRSGDRAEGTFNSDMGGGTEFFLTWS  180
            VLKGNVGSDSLAITWAHPELPQRAFDLGAGQGTIRRSGDRAEGTFNSDMGGGTEFFLTWS
Sbjct  121  VLKGNVGSDSLAITWAHPELPQRAFDLGAGQGTIRRSGDRAEGTFNSDMGGGTEFFLTWS  180

Query  181  LTMRN  185
            LTMRN
Sbjct  181  LTMRN  185


>gi|339631295|ref|YP_004722937.1| hypothetical protein MAF_12470 [Mycobacterium africanum GM041182]
 gi|339330651|emb|CCC26319.1| putative lipoprotein LPQX [Mycobacterium africanum GM041182]
Length=185

 Score =  372 bits (954),  Expect = 2e-101, Method: Compositional matrix adjust.
 Identities = 184/185 (99%), Positives = 184/185 (99%), Gaps = 0/185 (0%)

Query  1    MSRQWHWLAATLLLITTAACSRPGTEEPDCPTKITLPPGATPTTTLDPRCIVRATTTGTA  60
            MSRQWHWLAATLLLITTAACSRPGTEEPDCPTKITLPPGATPTTTLDPRCIVRATTTGTA
Sbjct  1    MSRQWHWLAATLLLITTAACSRPGTEEPDCPTKITLPPGATPTTTLDPRCIVRATTTGTA  60

Query  61   DGDAASRWTGTVRIAGFYASICNAVWDGNVSLAGKDELTGKATLILVETSCPGKVVAGEL  120
            DGDAASRWTGTVRIAGFYASICNAVWDGNVSLAGKDELTGKATLILVETSCPGKVVAGEL
Sbjct  61   DGDAASRWTGTVRIAGFYASICNAVWDGNVSLAGKDELTGKATLILVETSCPGKVVAGEL  120

Query  121  VLKGNVGSDSLAITWAHPELPQRAFDLGAGQGTIRRSGDRAEGTFNSDMGGGTEFFLTWS  180
            VLKGNVGSDSLAITWAHPELPQRAFDLGAGQGTIRRSGDRAEGTFNSDMGGGTEFFLTWS
Sbjct  121  VLKGNVGSDSLAITWAHPELPQRAFDLGAGQGTIRRSGDRAEGTFNSDMGGGTEFFLTWS  180

Query  181  LTMRN  185
            L MRN
Sbjct  181  LKMRN  185


>gi|340626241|ref|YP_004744693.1| putative lipoprotein LPQX [Mycobacterium canettii CIPT 140010059]
 gi|340004431|emb|CCC43574.1| putative lipoprotein LPQX [Mycobacterium canettii CIPT 140010059]
Length=185

 Score =  371 bits (952),  Expect = 3e-101, Method: Compositional matrix adjust.
 Identities = 184/185 (99%), Positives = 184/185 (99%), Gaps = 0/185 (0%)

Query  1    MSRQWHWLAATLLLITTAACSRPGTEEPDCPTKITLPPGATPTTTLDPRCIVRATTTGTA  60
            MSRQWHWLAATLLLITTAACSRPGTEEPDCPTKITLPPGATPTTTLDPRCIVRATTTGTA
Sbjct  1    MSRQWHWLAATLLLITTAACSRPGTEEPDCPTKITLPPGATPTTTLDPRCIVRATTTGTA  60

Query  61   DGDAASRWTGTVRIAGFYASICNAVWDGNVSLAGKDELTGKATLILVETSCPGKVVAGEL  120
            DGDAASRWTGTVRIAG YASICNAVWDGNVSLAGKDELTGKATLILVETSCPGKVVAGEL
Sbjct  61   DGDAASRWTGTVRIAGLYASICNAVWDGNVSLAGKDELTGKATLILVETSCPGKVVAGEL  120

Query  121  VLKGNVGSDSLAITWAHPELPQRAFDLGAGQGTIRRSGDRAEGTFNSDMGGGTEFFLTWS  180
            VLKGNVGSDSLAITWAHPELPQRAFDLGAGQGTIRRSGDRAEGTFNSDMGGGTEFFLTWS
Sbjct  121  VLKGNVGSDSLAITWAHPELPQRAFDLGAGQGTIRRSGDRAEGTFNSDMGGGTEFFLTWS  180

Query  181  LTMRN  185
            LTMRN
Sbjct  181  LTMRN  185


>gi|289569231|ref|ZP_06449458.1| lipoprotein lpqX [Mycobacterium tuberculosis T17]
 gi|289542985|gb|EFD46633.1| lipoprotein lpqX [Mycobacterium tuberculosis T17]
Length=157

 Score =  278 bits (711),  Expect = 3e-73, Method: Compositional matrix adjust.
 Identities = 138/139 (99%), Positives = 138/139 (99%), Gaps = 0/139 (0%)

Query  1    MSRQWHWLAATLLLITTAACSRPGTEEPDCPTKITLPPGATPTTTLDPRCIVRATTTGTA  60
            MSRQWHWLAATLLLITTAACSRPGTEEPDCPTKITLPPGATPTTTLDPRCIVRATTTGTA
Sbjct  1    MSRQWHWLAATLLLITTAACSRPGTEEPDCPTKITLPPGATPTTTLDPRCIVRATTTGTA  60

Query  61   DGDAASRWTGTVRIAGFYASICNAVWDGNVSLAGKDELTGKATLILVETSCPGKVVAGEL  120
            DGDAASRWTGTVRIAGFYASICNAVWDGNVSLAGKDELTGKATLILVETSCPGKVVAGEL
Sbjct  61   DGDAASRWTGTVRIAGFYASICNAVWDGNVSLAGKDELTGKATLILVETSCPGKVVAGEL  120

Query  121  VLKGNVGSDSLAITWAHPE  139
            VLKGNVGSDSLAITWAHP 
Sbjct  121  VLKGNVGSDSLAITWAHPN  139


>gi|313658092|ref|ZP_07814972.1| lipoprotein lpqX [Mycobacterium tuberculosis KZN V2475]
 gi|323720286|gb|EGB29384.1| lipoprotein lpqX [Mycobacterium tuberculosis CDC1551A]
 gi|339294215|gb|AEJ46326.1| lipoprotein LpqX [Mycobacterium tuberculosis CCDC5079]
 gi|339297855|gb|AEJ49965.1| lipoprotein LpqX [Mycobacterium tuberculosis CCDC5180]
Length=134

 Score =  268 bits (686),  Expect = 2e-70, Method: Compositional matrix adjust.
 Identities = 133/134 (99%), Positives = 134/134 (100%), Gaps = 0/134 (0%)

Query  52   VRATTTGTADGDAASRWTGTVRIAGFYASICNAVWDGNVSLAGKDELTGKATLILVETSC  111
            +RATTTGTADGDAASRWTGTVRIAGFYASICNAVWDGNVSLAGKDELTGKATLILVETSC
Sbjct  1    MRATTTGTADGDAASRWTGTVRIAGFYASICNAVWDGNVSLAGKDELTGKATLILVETSC  60

Query  112  PGKVVAGELVLKGNVGSDSLAITWAHPELPQRAFDLGAGQGTIRRSGDRAEGTFNSDMGG  171
            PGKVVAGELVLKGNVGSDSLAITWAHPELPQRAFDLGAGQGTIRRSGDRAEGTFNSDMGG
Sbjct  61   PGKVVAGELVLKGNVGSDSLAITWAHPELPQRAFDLGAGQGTIRRSGDRAEGTFNSDMGG  120

Query  172  GTEFFLTWSLTMRN  185
            GTEFFLTWSLTMRN
Sbjct  121  GTEFFLTWSLTMRN  134


>gi|289745633|ref|ZP_06505011.1| lipoprotein lppQ [Mycobacterium tuberculosis 02_1987]
 gi|289686161|gb|EFD53649.1| lipoprotein lppQ [Mycobacterium tuberculosis 02_1987]
Length=139

 Score = 42.0 bits (97),  Expect = 0.036, Method: Compositional matrix adjust.
 Identities = 36/116 (32%), Positives = 55/116 (48%), Gaps = 19/116 (16%)

Query  8    LAATLLLITTAACSRPG--TEEPDCPTKITLPPGATPTTTLDPRCIVRATTTGTADGDAA  65
            +AA L+L+  +AC R    T EP CPT+      A  +TT DP C+VRAT     +G   
Sbjct  20   VAAPLMLLGLSACGRSAGKTSEPTCPTEPI--DAADSSTTPDPSCVVRATAI-NGNGSRI  76

Query  66   SRWTGTVRIAG------------FYASICNAVWDGNVSLAGKDELTGKATLILVET  109
              WTG+   A             F+A++   V +G +S  G  +   +A ++ + T
Sbjct  77   QTWTGSYDAAATQSGGVCGGTCNFHATVRFTVDEGQIS--GSVDQVYQAAMVAIAT  130


>gi|340627352|ref|YP_004745804.1| putative lipoprotein LPPQ [Mycobacterium canettii CIPT 140010059]
 gi|340005542|emb|CCC44704.1| putative conserved lipoprotein LPPQ [Mycobacterium canettii CIPT 
140010059]
Length=139

 Score = 42.0 bits (97),  Expect = 0.042, Method: Compositional matrix adjust.
 Identities = 36/116 (32%), Positives = 55/116 (48%), Gaps = 19/116 (16%)

Query  8    LAATLLLITTAACSRPG--TEEPDCPTKITLPPGATPTTTLDPRCIVRATTTGTADGDAA  65
            +AA L+L+  +AC R    T EP CPT+      A  +TT DP C+VRAT     +G   
Sbjct  20   VAAPLMLLGLSACGRSADKTSEPTCPTEPI--DAADSSTTPDPSCVVRATEI-NGNGSRI  76

Query  66   SRWTGTVRIAG------------FYASICNAVWDGNVSLAGKDELTGKATLILVET  109
              WTG+   A             F+A++   V +G +S  G  +   +A ++ + T
Sbjct  77   QTWTGSYDAAATQSGGVCGGTCNFHATVRFTVDEGQIS--GSVDQVYQAAMVAIAT  130


>gi|15609478|ref|NP_216857.1| lipoprotein LppQ [Mycobacterium tuberculosis H37Rv]
 gi|15841848|ref|NP_336885.1| putative lipoprotein [Mycobacterium tuberculosis CDC1551]
 gi|31793526|ref|NP_856019.1| lipoprotein LppQ [Mycobacterium bovis AF2122/97]
 66 more sequence titles
 Length=139

 Score = 42.0 bits (97),  Expect = 0.042, Method: Compositional matrix adjust.
 Identities = 36/116 (32%), Positives = 55/116 (48%), Gaps = 19/116 (16%)

Query  8    LAATLLLITTAACSRPG--TEEPDCPTKITLPPGATPTTTLDPRCIVRATTTGTADGDAA  65
            +AA L+L+  +AC R    T EP CPT+      A  +TT DP C+VRAT     +G   
Sbjct  20   VAAPLMLLGLSACGRSAGKTSEPTCPTEPI--DAADSSTTPDPSCVVRATEI-NGNGSRI  76

Query  66   SRWTGTVRIAG------------FYASICNAVWDGNVSLAGKDELTGKATLILVET  109
              WTG+   A             F+A++   V +G +S  G  +   +A ++ + T
Sbjct  77   QTWTGSYDAAATQSGGVCGGTCNFHATVRFTVDEGQIS--GSVDQVYQAAMVAIAT  130


>gi|148823542|ref|YP_001288296.1| lipoprotein lppQ [Mycobacterium tuberculosis F11]
 gi|167969897|ref|ZP_02552174.1| lipoprotein lppQ [Mycobacterium tuberculosis H37Ra]
 gi|253798585|ref|YP_003031586.1| lipoprotein lppQ [Mycobacterium tuberculosis KZN 1435]
 7 more sequence titles
 Length=144

 Score = 42.0 bits (97),  Expect = 0.043, Method: Compositional matrix adjust.
 Identities = 36/116 (32%), Positives = 55/116 (48%), Gaps = 19/116 (16%)

Query  8    LAATLLLITTAACSRPG--TEEPDCPTKITLPPGATPTTTLDPRCIVRATTTGTADGDAA  65
            +AA L+L+  +AC R    T EP CPT+      A  +TT DP C+VRAT     +G   
Sbjct  25   VAAPLMLLGLSACGRSAGKTSEPTCPTEPI--DAADSSTTPDPSCVVRATEI-NGNGSRI  81

Query  66   SRWTGTVRIAG------------FYASICNAVWDGNVSLAGKDELTGKATLILVET  109
              WTG+   A             F+A++   V +G +S  G  +   +A ++ + T
Sbjct  82   QTWTGSYDAAATQSGGVCGGTCNFHATVRFTVDEGQIS--GSVDQVYQAAMVAIAT  135


>gi|14209823|gb|AAK56857.1| VacA [Helicobacter pylori]
Length=1287

 Score = 38.5 bits (88),  Expect = 0.51, Method: Composition-based stats.
 Identities = 39/148 (27%), Positives = 63/148 (43%), Gaps = 20/148 (13%)

Query  32   TKITLPPGATPTTTLDPRCIVRATTTGTAD-----GDAASRWTGTVRIAGFYASICNAVW  86
            T++  PP  T  T  +P  ++     G  D         ++  GT+R+ GF AS+     
Sbjct  359  TEVINPPNNTQKTETEPTQVIDGPFAGGKDTVVNIDRINTKADGTIRVGGFKASLTTNAA  418

Query  87   DGNVSLAGKDELTGKAT--LILVETSCPGKVVAGELVLKGNVGSDSLAITWAHPELPQRA  144
              N+   G + L+ +A+   +LVE       V G L +   VG  +LA + A+       
Sbjct  419  HLNIGKGGVN-LSNQASGRTLLVENLTGNITVDGPLRVNNQVGGYALAGSSAN-------  470

Query  145  FDLGAGQGTIRRSGDRAEGTFNSDMGGG  172
            F+  AG+ T          TFN+D+  G
Sbjct  471  FEFKAGEDT-----KNGTATFNNDISLG  493


>gi|14209829|gb|AAK56860.1| VacA [Helicobacter pylori]
Length=1289

 Score = 36.6 bits (83),  Expect = 1.5, Method: Composition-based stats.
 Identities = 38/149 (26%), Positives = 62/149 (42%), Gaps = 22/149 (14%)

Query  32   TKITLPPGATPTTTLDPRCIVRATTTGTAD-----GDAASRWTGTVRIAGFYASICNAVW  86
            T++  PP  T  T  +P  ++     G  D         ++  GT+R+ GF AS+     
Sbjct  359  TEVINPPNNTQKTETEPTQVIDGPFAGGKDTVVNIDRINTKSDGTIRVGGFKASLTTNAA  418

Query  87   DGNVSLAG---KDELTGKATLILVETSCPGKVVAGELVLKGNVGSDSLAITWAHPELPQR  143
              N+   G    ++ +G++  +LVE       V G L +   VG  +LA + A+      
Sbjct  419  HLNIGKGGVNLSNQASGRS--LLVENLTGNITVDGPLRVNNQVGGYALAGSSAN------  470

Query  144  AFDLGAGQGTIRRSGDRAEGTFNSDMGGG  172
             F+  AG  T          TFN+D+  G
Sbjct  471  -FEFKAGVDT-----KNGTATFNNDISLG  493


>gi|317014293|gb|ADU81729.1| vacuolating cytotoxin [Helicobacter pylori Gambia94/24]
Length=1288

 Score = 36.6 bits (83),  Expect = 1.6, Method: Composition-based stats.
 Identities = 39/148 (27%), Positives = 62/148 (42%), Gaps = 20/148 (13%)

Query  32   TKITLPPGATPTTTLDPRCIVRATTTGTAD-----GDAASRWTGTVRIAGFYASICNAVW  86
            T++  PP  T  T  +P  ++     G  D         ++  GT+R+ GF AS+     
Sbjct  359  TEVINPPNNTQKTETEPTQVIDGPFAGGKDTVVNIDRINTKADGTIRVGGFKASLTTNAA  418

Query  87   DGNVSLAGKDELTGKAT--LILVETSCPGKVVAGELVLKGNVGSDSLAITWAHPELPQRA  144
              N+   G + L+ +A+   +LVE       V G L +   VG  +LA + A+       
Sbjct  419  HLNIGKGGVN-LSNQASGRTLLVENLTGNITVDGPLRVNNQVGGYALAGSSAN-------  470

Query  145  FDLGAGQGTIRRSGDRAEGTFNSDMGGG  172
            F+  AG  T          TFN+D+  G
Sbjct  471  FEFKAGVDT-----KNGTATFNNDISLG  493


>gi|302677438|ref|XP_003028402.1| hypothetical protein SCHCODRAFT_112778 [Schizophyllum commune 
H4-8]
 gi|300102090|gb|EFI93499.1| hypothetical protein SCHCODRAFT_112778 [Schizophyllum commune 
H4-8]
Length=1976

 Score = 36.6 bits (83),  Expect = 1.6, Method: Compositional matrix adjust.
 Identities = 28/94 (30%), Positives = 44/94 (47%), Gaps = 29/94 (30%)

Query  67   RWTGTVRIAGFYASICNAVW----------------DGNVS------------LAGKDEL  98
            +W  + R    YA+IC+A++                 G+VS            + G D  
Sbjct  130  KWHFSGRKGWHYAAICDAIFAFADRTDTGTSALLAFPGSVSYMYDLWWYMMHVIGGVDPA  189

Query  99   TG-KATLILVETSCPGKVVAGELVLKGNVGSDSL  131
             G  ATL+L+ +  P + VAGE+V KG++G D+L
Sbjct  190  DGIVATLVLLSSGAPNQQVAGEIVAKGSLGVDAL  223


>gi|297380087|gb|ADI34974.1| Vacuolating cytotoxin [Helicobacter pylori v225d]
Length=1293

 Score = 36.6 bits (83),  Expect = 1.7, Method: Composition-based stats.
 Identities = 36/161 (23%), Positives = 69/161 (43%), Gaps = 21/161 (13%)

Query  17   TAACSRPGTEEPDCPTKITLPPGATPTTTLDPRCIVRATTTGTADGDAA-----SRWTGT  71
            +A   + G+ + +  T++  PP +   T   P  ++     G  D         ++  GT
Sbjct  351  SAKNDKQGSSQDNSNTQVINPPNSGQKTETQPTQVIDGPFAGAKDTAVTIDSLNTKSDGT  410

Query  72   VRIAGFYASICNAVWDGNVSLAG---KDELTGKATLILVETSCPGKVVAGELVLKGNVGS  128
            +++ GF AS+     + N+   G    ++ +G++  +LVE       V G L + G  G 
Sbjct  411  IKVGGFKASLTTNAANLNIGKGGVNLSNQASGRS--LLVENLTGNITVNGALKVNGQAGG  468

Query  129  DSLAITWAHPELPQRAFDLGAG----QGTIRRSGDRAEGTF  165
             +L+ + A       +F+  AG     GTI  + + + G F
Sbjct  469  YALSGSSA-------SFEFKAGVDTNNGTIAFNNNISLGRF  502


>gi|325997763|gb|ADZ49971.1| vacuolating cytotoxin [Helicobacter pylori 2017]
Length=1288

 Score = 36.6 bits (83),  Expect = 1.8, Method: Composition-based stats.
 Identities = 39/148 (27%), Positives = 62/148 (42%), Gaps = 20/148 (13%)

Query  32   TKITLPPGATPTTTLDPRCIVRATTTGTAD-----GDAASRWTGTVRIAGFYASICNAVW  86
            T++  PP  T  T  +P  ++     G  D         ++  GT+R+ GF AS+     
Sbjct  359  TEVINPPNNTQKTETEPTQVIDGPFAGGKDTVVNIDRINTKADGTIRVGGFKASLTTNAA  418

Query  87   DGNVSLAGKDELTGKAT--LILVETSCPGKVVAGELVLKGNVGSDSLAITWAHPELPQRA  144
              N+   G + L+ +A+   +LVE       V G L +   VG  +LA + A+       
Sbjct  419  HLNIGKGGVN-LSNQASGRTLLVENLTGNITVDGPLRVNNQVGGYALAGSSAN-------  470

Query  145  FDLGAGQGTIRRSGDRAEGTFNSDMGGG  172
            F+  AG  T          TFN+D+  G
Sbjct  471  FEFKAGVDT-----KNGTATFNNDISLG  493


>gi|325996167|gb|ADZ51572.1| vacuolating cytotoxin [Helicobacter pylori 2018]
Length=1288

 Score = 36.6 bits (83),  Expect = 1.9, Method: Composition-based stats.
 Identities = 39/148 (27%), Positives = 62/148 (42%), Gaps = 20/148 (13%)

Query  32   TKITLPPGATPTTTLDPRCIVRATTTGTAD-----GDAASRWTGTVRIAGFYASICNAVW  86
            T++  PP  T  T  +P  ++     G  D         ++  GT+R+ GF AS+     
Sbjct  359  TEVINPPNNTQKTETEPTQVIDGPFAGGKDTVVNIDRINTKADGTIRVGGFKASLTTNAA  418

Query  87   DGNVSLAGKDELTGKAT--LILVETSCPGKVVAGELVLKGNVGSDSLAITWAHPELPQRA  144
              N+   G + L+ +A+   +LVE       V G L +   VG  +LA + A+       
Sbjct  419  HLNIGKGGVN-LSNQASGRTLLVENLTGNITVDGPLRVNNQVGGYALAGSSAN-------  470

Query  145  FDLGAGQGTIRRSGDRAEGTFNSDMGGG  172
            F+  AG  T          TFN+D+  G
Sbjct  471  FEFKAGVDT-----KNGTATFNNDISLG  493


>gi|14209825|gb|AAK56858.1| VacA [Helicobacter pylori]
Length=1288

 Score = 36.6 bits (83),  Expect = 1.9, Method: Composition-based stats.
 Identities = 39/148 (27%), Positives = 62/148 (42%), Gaps = 20/148 (13%)

Query  32   TKITLPPGATPTTTLDPRCIVRATTTGTAD-----GDAASRWTGTVRIAGFYASICNAVW  86
            T++  PP  T  T  +P  ++     G  D         ++  GT+R+ GF AS+     
Sbjct  359  TEVINPPNNTQKTETEPTQVIDGPFAGGKDTVVNIDRINTKADGTIRVGGFKASLTTNAA  418

Query  87   DGNVSLAGKDELTGKAT--LILVETSCPGKVVAGELVLKGNVGSDSLAITWAHPELPQRA  144
              N+   G + L+ +A+   +LVE       V G L +   VG  +LA + A+       
Sbjct  419  HLNIGKGGVN-LSNQASGRTLLVENLTGNITVDGPLRVNNQVGGYALAGSSAN-------  470

Query  145  FDLGAGQGTIRRSGDRAEGTFNSDMGGG  172
            F+  AG  T          TFN+D+  G
Sbjct  471  FEFKAGVDT-----KNGTATFNNDISLG  493


>gi|2499108|sp|Q48245.1|VACA2_HELPY RecName: Full=Vacuolating cytotoxin autotransporter; Contains: 
RecName: Full=Vacuolating cytotoxin; Contains: RecName: Full=Vacuolating 
cytotoxin translocator; Flags: Precursor
 gi|471729|gb|AAA17657.1| vacuolating cytotoxin [Helicobacter pylori]
Length=1287

 Score = 36.6 bits (83),  Expect = 1.9, Method: Composition-based stats.
 Identities = 38/148 (26%), Positives = 63/148 (43%), Gaps = 20/148 (13%)

Query  32   TKITLPPGATPTTTLDPRCIVRATTTGTAD-----GDAASRWTGTVRIAGFYASICNAVW  86
            T++  PP +T  T + P  ++     G  D         ++  GT+++ GF AS+     
Sbjct  358  TQVINPPNSTQKTEVQPTQVIDGPFAGGKDTVVNIDRINTKADGTIKVGGFKASLTTNAA  417

Query  87   DGNVSLAGKDELTGKAT--LILVETSCPGKVVAGELVLKGNVGSDSLAITWAHPELPQRA  144
              N+   G + L+ +A+   +LVE       V G L +   VG  +LA + A+       
Sbjct  418  HLNIGKGGVN-LSNQASGRTLLVENLTGNITVDGPLRVNNQVGGYALAGSSAN-------  469

Query  145  FDLGAGQGTIRRSGDRAEGTFNSDMGGG  172
            F+  AG  T          TFN+D+  G
Sbjct  470  FEFKAGVDT-----KNGTATFNNDISLG  492


>gi|188592963|emb|CAQ53114.1| C-terminal part vacuolating cytotoxin A (vacA-C) [Helicobacter 
pylori G27]
Length=685

 Score = 36.2 bits (82),  Expect = 2.1, Method: Composition-based stats.
 Identities = 41/151 (28%), Positives = 66/151 (44%), Gaps = 26/151 (17%)

Query  32   TKITLPPGATPTTTLDPRCIVRATTTGTAD-----GDAASRWTGTVRIAGFYASI-CNA-  84
            T++  PP +T  T + P  ++     G  D         +   GT+R+ GF AS+  NA 
Sbjct  39   TQVINPPNSTQKTEIQPTQVIDGPFAGGKDTVVNINRINTNADGTIRVGGFKASLTTNAA  98

Query  85   ---VWDGNVSLAGKDELTGKATLILVETSCPGKVVAGELVLKGNVGSDSLAITWAHPELP  141
               +  G V+L+  ++ +G+   +LVE       V G L +   VG  +LA + A+    
Sbjct  99   HLHIGKGGVNLS--NQASGRT--LLVENLTGNITVDGPLRVNNQVGGYALAGSSAN----  150

Query  142  QRAFDLGAGQGTIRRSGDRAEGTFNSDMGGG  172
               F+  AG  T          TFN+D+  G
Sbjct  151  ---FEFKAGVDT-----KNGTATFNNDISLG  173


>gi|282857245|ref|ZP_06266485.1| hypothetical protein HMPREF7215_2694 [Pyramidobacter piscolens 
W5455]
 gi|282584895|gb|EFB90223.1| hypothetical protein HMPREF7215_2694 [Pyramidobacter piscolens 
W5455]
Length=1071

 Score = 36.2 bits (82),  Expect = 2.1, Method: Compositional matrix adjust.
 Identities = 29/105 (28%), Positives = 48/105 (46%), Gaps = 12/105 (11%)

Query  71   TVRIAGFYASICNAVWDGNVSLAGKDELTGKATLILVETSCPGKVVAGELVLKGNVGSDS  130
            TVR+     S+  +V DG VSLA   E+ G       + + P       L+    V   +
Sbjct  712  TVRLDALDPSLA-SVADGRVSLAVHSEVDGSGVSFTGQAASP-------LITAAQVPVSN  763

Query  131  LAITWAHPE----LPQRAFDLGAGQGTIRRSGDRAEGTFNSDMGG  171
            + I +A  +    +P   F+LG G   ++  GD A+GT++  + G
Sbjct  764  VLIPFAFRQNKVHIPDGQFELGGGAFHVKADGDVAKGTYSVQLNG  808


>gi|52693844|dbj|BAD51775.1| vacuolating cytotoxin A [Helicobacter pylori]
 gi|52693846|dbj|BAD51776.1| vacuolating cytotoxin A [Helicobacter pylori]
Length=1295

 Score = 36.2 bits (82),  Expect = 2.2, Method: Composition-based stats.
 Identities = 39/163 (24%), Positives = 67/163 (42%), Gaps = 20/163 (12%)

Query  17   TAACSRPGTEEPDCPTKITLPPGATPTTTLDPRCIVRATTTGTAD-----GDAASRWTGT  71
            +A   +  + + +  T++  PP +   T + P  ++     G  D         +   GT
Sbjct  351  SAKNDKQNSAQNNSNTQVINPPNSAQKTEIQPTQVIDGPFAGGKDTVVNIDRINTNADGT  410

Query  72   VRIAGFYASICNAVWDGNVSLAGKDELTGKAT--LILVETSCPGKVVAGELVLKGNVGSD  129
            +R+ GF AS+       N+   G + L+ +A+   +LVE       V G L +   VG  
Sbjct  411  IRVGGFKASLTTNAAHLNIGKGGVN-LSNQASGRTLLVENLTGNITVDGPLRVNNQVGGY  469

Query  130  SLAITWAHPELPQRAFDLGAGQGTIRRSGDRAEGTFNSDMGGG  172
            +LA + A+       F+  AG  T          TFN+D+  G
Sbjct  470  ALAGSSAN-------FEFKAGTDT-----KNGTATFNNDISLG  500


>gi|208434795|ref|YP_002266461.1| vacuolating cytotoxin A [Helicobacter pylori G27]
 gi|208432724|gb|ACI27595.1| vacuolating cytotoxin A [Helicobacter pylori G27]
Length=1294

 Score = 36.2 bits (82),  Expect = 2.3, Method: Composition-based stats.
 Identities = 41/151 (28%), Positives = 66/151 (44%), Gaps = 26/151 (17%)

Query  32   TKITLPPGATPTTTLDPRCIVRATTTGTAD-----GDAASRWTGTVRIAGFYASI-CNA-  84
            T++  PP +T  T + P  ++     G  D         +   GT+R+ GF AS+  NA 
Sbjct  366  TQVINPPNSTQKTEIQPTQVIDGPFAGGKDTVVNINRINTNADGTIRVGGFKASLTTNAA  425

Query  85   ---VWDGNVSLAGKDELTGKATLILVETSCPGKVVAGELVLKGNVGSDSLAITWAHPELP  141
               +  G V+L+  ++ +G+   +LVE       V G L +   VG  +LA + A+    
Sbjct  426  HLHIGKGGVNLS--NQASGRT--LLVENLTGNITVDGPLRVNNQVGGYALAGSSAN----  477

Query  142  QRAFDLGAGQGTIRRSGDRAEGTFNSDMGGG  172
               F+  AG  T          TFN+D+  G
Sbjct  478  ---FEFKAGVDT-----KNGTATFNNDISLG  500


>gi|14209827|gb|AAK56859.1| VacA [Helicobacter pylori]
Length=1287

 Score = 35.8 bits (81),  Expect = 2.9, Method: Composition-based stats.
 Identities = 37/149 (25%), Positives = 62/149 (42%), Gaps = 22/149 (14%)

Query  32   TKITLPPGATPTTTLDPRCIVRATTTGTAD-----GDAASRWTGTVRIAGFYASICNAVW  86
            T++  PP  T  T  +P  ++     G  D         ++  GT+R+ GF AS+     
Sbjct  359  TEVINPPNNTQKTKTEPTQVIDGPFAGGKDTVVNIDRINTKADGTIRVGGFKASLTTNAA  418

Query  87   DGNVSLAG---KDELTGKATLILVETSCPGKVVAGELVLKGNVGSDSLAITWAHPELPQR  143
              N+   G    ++ +G++  ++VE       V G L +   VG  +LA + A+      
Sbjct  419  HLNIGKGGVNLSNQASGRS--LIVENLTGNITVDGPLRVNNQVGGYALAGSSAN------  470

Query  144  AFDLGAGQGTIRRSGDRAEGTFNSDMGGG  172
             F+  AG  T          TFN+D+  G
Sbjct  471  -FEFKAGVDT-----KNGTATFNNDISLG  493


>gi|283780744|ref|YP_003371499.1| alpha/beta hydrolase fold-3 domain-containing protein [Pirellula 
staleyi DSM 6068]
 gi|283439197|gb|ADB17639.1| Alpha/beta hydrolase fold-3 domain protein [Pirellula staleyi 
DSM 6068]
Length=301

 Score = 35.4 bits (80),  Expect = 3.4, Method: Compositional matrix adjust.
 Identities = 25/87 (29%), Positives = 43/87 (50%), Gaps = 19/87 (21%)

Query  13   LLITTAACSR-PGTEEPDCPTKITLPPGAT---------------PTTTLDPR-CIVRAT  55
            LL++ ++C+R  G ++P+ P  +T  PG T               PT  ++PR CI+   
Sbjct  18   LLLSASSCARAQGAKQPEVPDGVTYEPGVTYCKVGDIELKLDLARPTKVIEPRPCILMIH  77

Query  56   TTGTADGDAASRWTGTVRIA--GFYAS  80
              G   GD ++    TV++A  G+ A+
Sbjct  78   GGGWRGGDRSAHSDATVKLADQGYVAA  104


>gi|310657282|gb|ADP02392.1| VacA [Helicobacter pylori]
Length=961

 Score = 35.4 bits (80),  Expect = 3.4, Method: Composition-based stats.
 Identities = 38/148 (26%), Positives = 63/148 (43%), Gaps = 20/148 (13%)

Query  32   TKITLPPGATPTTTLDPRCIVRATTTGTAD-----GDAASRWTGTVRIAGFYASICNAVW  86
            T++  PP  T  T + P  ++  +  G  D         ++  GT+++ GF AS+     
Sbjct  356  TEVINPPNNTQKTEIQPTQVIDGSFAGGKDTVVNIDRINTKADGTIKVGGFKASLTTNAA  415

Query  87   DGNVSLAGKDELTGKAT--LILVETSCPGKVVAGELVLKGNVGSDSLAITWAHPELPQRA  144
              N+   G + L+ +A+   +LVE       V G L +   VG  +LA + A+       
Sbjct  416  HLNIGKGGVN-LSNQASGRTLLVENLTGNITVDGPLRVNNQVGGYALAGSSAN-------  467

Query  145  FDLGAGQGTIRRSGDRAEGTFNSDMGGG  172
            F+  AG  T          TFN+D+  G
Sbjct  468  FEFKAGVDT-----KNGTATFNNDISLG  490


>gi|15611886|ref|NP_223537.1| vacuolating cytotoxin [Helicobacter pylori J99]
 gi|12230793|sp|Q9ZKW5.1|VACA_HELPJ RecName: Full=Vacuolating cytotoxin autotransporter; Contains: 
RecName: Full=Vacuolating cytotoxin; Contains: RecName: Full=Vacuolating 
cytotoxin translocator; Flags: Precursor
 gi|4155390|gb|AAD06400.1| vacuolating cytotoxin [Helicobacter pylori J99]
Length=1288

 Score = 35.4 bits (80),  Expect = 4.0, Method: Composition-based stats.
 Identities = 38/148 (26%), Positives = 62/148 (42%), Gaps = 20/148 (13%)

Query  32   TKITLPPGATPTTTLDPRCIVRATTTGTADG-----DAASRWTGTVRIAGFYASICNAVW  86
            T++  PP  T  T  +P  ++     G  D         ++  GT+++ GF AS+     
Sbjct  359  TEVINPPNNTQKTETEPTQVIDGPFAGGKDTVVNIFHLNTKADGTIKVGGFKASLTTNAA  418

Query  87   DGNVSLAGKDELTGKAT--LILVETSCPGKVVAGELVLKGNVGSDSLAITWAHPELPQRA  144
              N+   G + L+ +A+   +LVE       V G L +   VG  +LA + A+       
Sbjct  419  HLNIGKGGVN-LSNQASGRTLLVENLTGNITVDGPLRVNNQVGGYALAGSSAN-------  470

Query  145  FDLGAGQGTIRRSGDRAEGTFNSDMGGG  172
            F+  AG  T          TFN+D+  G
Sbjct  471  FEFKAGVDT-----KNGTATFNNDISLG  493


>gi|297616646|ref|YP_003701805.1| acyl-CoA dehydrogenase domain-containing protein [Syntrophothermus 
lipocalidus DSM 12680]
 gi|297144483|gb|ADI01240.1| acyl-CoA dehydrogenase domain protein [Syntrophothermus lipocalidus 
DSM 12680]
Length=379

 Score = 35.0 bits (79),  Expect = 5.3, Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 10/100 (10%)

Query  42   PTTTLDPRCIVRATTTGTADGDAASRWTGTVRIAGFYASICNAVWDGNVSLAGKDELTGK  101
            P T  DP+ I   TTT   DG+      GT R       I N  + G V L  +D+  GK
Sbjct  127  PGTGSDPKQI---TTTAVRDGNHFV-INGTKRF------ISNGTYPGPVVLFARDQENGK  176

Query  102  ATLILVETSCPGKVVAGELVLKGNVGSDSLAITWAHPELP  141
             T  +VE  C G  V+      G  G D + I   +  +P
Sbjct  177  ITAFIVEKFCEGYSVSKPWEKVGWHGGDLVDIYLKNVRIP  216



Lambda     K      H
   0.317    0.133    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 174138591420


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40