BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1231c Length=180 Score E Sequences producing significant alignments: (Bits) Value gi|15608371|ref|NP_215747.1| hypothetical protein Rv1231c [Mycob... 357 4e-97 gi|289442665|ref|ZP_06432409.1| membrane protein [Mycobacterium ... 352 1e-95 gi|289761377|ref|ZP_06520755.1| membrane protein [Mycobacterium ... 320 6e-86 gi|289744976|ref|ZP_06504354.1| conserved hypothetical protein [... 309 9e-83 gi|183984182|ref|YP_001852473.1| hypothetical protein MMAR_4210 ... 273 9e-72 gi|254823044|ref|ZP_05228045.1| hypothetical protein MintA_24160... 270 6e-71 gi|240173007|ref|ZP_04751665.1| hypothetical protein MkanA1_2708... 256 1e-66 gi|296170132|ref|ZP_06851730.1| integral membrane protein [Mycob... 253 9e-66 gi|254774248|ref|ZP_05215764.1| integral membrane protein [Mycob... 249 9e-65 gi|118466846|ref|YP_880614.1| integral membrane protein [Mycobac... 249 1e-64 gi|41408649|ref|NP_961485.1| hypothetical protein MAP2551 [Mycob... 249 2e-64 gi|342862110|ref|ZP_08718753.1| integral membrane protein [Mycob... 247 5e-64 gi|333989841|ref|YP_004522455.1| hypothetical protein JDM601_120... 236 1e-60 gi|120405441|ref|YP_955270.1| hypothetical protein Mvan_4489 [My... 233 1e-59 gi|315443262|ref|YP_004076141.1| hypothetical protein Mspyr1_163... 229 2e-58 gi|118473368|ref|YP_889316.1| integral membrane protein [Mycobac... 229 2e-58 gi|145222795|ref|YP_001133473.1| hypothetical protein Mflv_2207 ... 228 4e-58 gi|169628614|ref|YP_001702263.1| hypothetical protein MAB_1523c ... 226 1e-57 gi|312138881|ref|YP_004006217.1| integral membrane protein [Rhod... 219 9e-56 gi|325676414|ref|ZP_08156092.1| integral membrane protein [Rhodo... 219 1e-55 gi|226307638|ref|YP_002767598.1| hypothetical protein RER_41510 ... 216 1e-54 gi|343928016|ref|ZP_08767481.1| hypothetical protein GOALK_100_0... 206 1e-51 gi|258651903|ref|YP_003201059.1| hypothetical protein Namu_1680 ... 205 2e-51 gi|54026691|ref|YP_120933.1| hypothetical protein nfa47180 [Noca... 204 3e-51 gi|108800952|ref|YP_641149.1| hypothetical protein Mmcs_3988 [My... 204 5e-51 gi|300783000|ref|YP_003763291.1| hypothetical protein AMED_1072 ... 202 1e-50 gi|262201804|ref|YP_003273012.1| hypothetical protein Gbro_1863 ... 202 2e-50 gi|284989709|ref|YP_003408263.1| hypothetical protein Gobs_1133 ... 200 8e-50 gi|256374948|ref|YP_003098608.1| hypothetical protein Amir_0801 ... 199 1e-49 gi|302524355|ref|ZP_07276697.1| integral membrane protein [Strep... 198 3e-49 gi|331694908|ref|YP_004331147.1| hypothetical protein Psed_1043 ... 194 5e-48 gi|227487905|ref|ZP_03918221.1| integral membrane protein [Coryn... 193 1e-47 gi|19552350|ref|NP_600352.1| hypothetical protein NCgl1079 [Cory... 192 1e-47 gi|225022876|ref|ZP_03712068.1| hypothetical protein CORMATOL_02... 192 2e-47 gi|296138921|ref|YP_003646164.1| hypothetical protein Tpau_1194 ... 191 3e-47 gi|226365453|ref|YP_002783236.1| hypothetical protein ROP_60440 ... 191 4e-47 gi|68536462|ref|YP_251167.1| hypothetical protein jk1376 [Coryne... 189 1e-46 gi|111022947|ref|YP_705919.1| hypothetical protein RHA1_ro05984 ... 189 2e-46 gi|25027739|ref|NP_737793.1| hypothetical protein CE1183 [Coryne... 188 2e-46 gi|326382042|ref|ZP_08203735.1| hypothetical protein SCNU_03822 ... 187 5e-46 gi|334696580|gb|AEG81377.1| hypothetical protein CULC809_00841 [... 187 5e-46 gi|337290467|ref|YP_004629488.1| hypothetical protein CULC22_008... 187 6e-46 gi|300858213|ref|YP_003783196.1| hypothetical protein cpfrc_0079... 187 7e-46 gi|237785248|ref|YP_002905953.1| hypothetical protein ckrop_0647... 186 1e-45 gi|38233593|ref|NP_939360.1| hypothetical protein DIP0998 [Coryn... 186 2e-45 gi|324999684|ref|ZP_08120796.1| hypothetical protein PseP1_12990... 183 1e-44 gi|340794818|ref|YP_004760281.1| hypothetical protein CVAR_1857 ... 182 1e-44 gi|172040355|ref|YP_001800069.1| hypothetical protein cur_0675 [... 182 2e-44 gi|334563607|ref|ZP_08516598.1| hypothetical protein CbovD2_0345... 180 6e-44 gi|256389353|ref|YP_003110917.1| hypothetical protein Caci_0121 ... 179 2e-43 >gi|15608371|ref|NP_215747.1| hypothetical protein Rv1231c [Mycobacterium tuberculosis H37Rv] gi|15840676|ref|NP_335713.1| hypothetical protein MT1269 [Mycobacterium tuberculosis CDC1551] gi|31792424|ref|NP_854917.1| hypothetical protein Mb1263c [Mycobacterium bovis AF2122/97] 68 more sequence titles Length=180 Score = 357 bits (917), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 179/180 (99%), Positives = 180/180 (100%), Gaps = 0/180 (0%) Query 1 VSKPFAPRRLYTPRTSRTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNL 60 +SKPFAPRRLYTPRTSRTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNL Sbjct 1 MSKPFAPRRLYTPRTSRTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNL 60 Query 61 FAVGLRWDPYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTE 120 FAVGLRWDPYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTE Sbjct 61 FAVGLRWDPYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTE 120 Query 121 YNARELAALRLAIGEVPTRDYLRHELDSLRALLAELQPTDPDVAQPRVADEAEQHAKKSG 180 YNARELAALRLAIGEVPTRDYLRHELDSLRALLAELQPTDPDVAQPRVADEAEQHAKKSG Sbjct 121 YNARELAALRLAIGEVPTRDYLRHELDSLRALLAELQPTDPDVAQPRVADEAEQHAKKSG 180 >gi|289442665|ref|ZP_06432409.1| membrane protein [Mycobacterium tuberculosis T46] gi|289569234|ref|ZP_06449461.1| membrane protein [Mycobacterium tuberculosis T17] gi|289749773|ref|ZP_06509151.1| membrane protein [Mycobacterium tuberculosis T92] gi|289753301|ref|ZP_06512679.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|289415584|gb|EFD12824.1| membrane protein [Mycobacterium tuberculosis T46] gi|289542988|gb|EFD46636.1| membrane protein [Mycobacterium tuberculosis T17] gi|289690360|gb|EFD57789.1| membrane protein [Mycobacterium tuberculosis T92] gi|289693888|gb|EFD61317.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] Length=180 Score = 352 bits (903), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 177/180 (99%), Positives = 178/180 (99%), Gaps = 0/180 (0%) Query 1 VSKPFAPRRLYTPRTSRTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNL 60 +SKPFAPRRLYTPRTSRTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNL Sbjct 1 MSKPFAPRRLYTPRTSRTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNL 60 Query 61 FAVGLRWDPYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTE 120 FAVGLRWDPYPFILL LAFSTQASYAAPLILLAQN QEKRDRAVFEEDRRRAAQTKADTE Sbjct 61 FAVGLRWDPYPFILLYLAFSTQASYAAPLILLAQNHQEKRDRAVFEEDRRRAAQTKADTE 120 Query 121 YNARELAALRLAIGEVPTRDYLRHELDSLRALLAELQPTDPDVAQPRVADEAEQHAKKSG 180 YNARELAALRLAIGEVPTRDYLRHELDSLRALLAELQPTDPDVAQPRVADEAEQHAKKSG Sbjct 121 YNARELAALRLAIGEVPTRDYLRHELDSLRALLAELQPTDPDVAQPRVADEAEQHAKKSG 180 >gi|289761377|ref|ZP_06520755.1| membrane protein [Mycobacterium tuberculosis GM 1503] gi|289708883|gb|EFD72899.1| membrane protein [Mycobacterium tuberculosis GM 1503] Length=180 Score = 320 bits (820), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 172/180 (96%), Positives = 173/180 (97%), Gaps = 0/180 (0%) Query 1 VSKPFAPRRLYTPRTSRTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNL 60 +SKPFAPRRLYTPRTSRTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNL Sbjct 1 MSKPFAPRRLYTPRTSRTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNL 60 Query 61 FAVGLRWDPYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTE 120 FAVGLRWDPYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTE Sbjct 61 FAVGLRWDPYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTE 120 Query 121 YNARELAALRLAIGEVPTRDYLRHELDSLRALLAELQPTDPDVAQPRVADEAEQHAKKSG 180 YNARELAALRLAIGEVPTRDYLRHELDSLRALLAELQPTDPDVAQPR HAKKSG Sbjct 121 YNARELAALRLAIGEVPTRDYLRHELDSLRALLAELQPTDPDVAQPRWPTRRSSHAKKSG 180 >gi|289744976|ref|ZP_06504354.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289685504|gb|EFD52992.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] Length=179 Score = 309 bits (792), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 160/183 (88%), Positives = 165/183 (91%), Gaps = 7/183 (3%) Query 1 VSKPFAPRRLYTPRTSRTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLL---VLTWIV 57 +SKPFAPRRLYTPRTSRTLAPRLDPEAV + ++ R + L Q L VLTWIV Sbjct 1 MSKPFAPRRLYTPRTSRTLAPRLDPEAVAESNRTVGRVL----HELAQRALSVGVLTWIV 56 Query 58 LNLFAVGLRWDPYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKA 117 LNLFAVGLRWDPYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKA Sbjct 57 LNLFAVGLRWDPYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKA 116 Query 118 DTEYNARELAALRLAIGEVPTRDYLRHELDSLRALLAELQPTDPDVAQPRVADEAEQHAK 177 DTEYNARELAALRLAIGEVPTRDYLRHELDSLRALLAELQPTDPDVAQPRVADEAEQHAK Sbjct 117 DTEYNARELAALRLAIGEVPTRDYLRHELDSLRALLAELQPTDPDVAQPRVADEAEQHAK 176 Query 178 KSG 180 KSG Sbjct 177 KSG 179 >gi|183984182|ref|YP_001852473.1| hypothetical protein MMAR_4210 [Mycobacterium marinum M] gi|183177508|gb|ACC42618.1| conserved hypothetical membrane protein [Mycobacterium marinum M] Length=176 Score = 273 bits (698), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 142/179 (80%), Positives = 151/179 (85%), Gaps = 4/179 (2%) Query 1 VSKPFAPRRLYTPRTSRTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNL 60 +SK A RRLYTPRTSR APRLDPEAVGRTTESIARFFGTGRYLLVQTL+V+ WI LNL Sbjct 1 MSKTPAARRLYTPRTSRAFAPRLDPEAVGRTTESIARFFGTGRYLLVQTLIVVIWISLNL 60 Query 61 FAVGLRWDPYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTE 120 FAV LRWDPYPFILLNLAFSTQASYAAPLILLAQNRQE RDR + + DRRRAAQTKADTE Sbjct 61 FAVKLRWDPYPFILLNLAFSTQASYAAPLILLAQNRQENRDRVLLDGDRRRAAQTKADTE 120 Query 121 YNARELAALRLAIGEVPTRDYLRHELDSLRALLAELQPTDPDVAQPRVADEAEQHAKKS 179 Y ARELAALRLAIG VPTRDYLRHEL+SLR L+AELQ PD D E+ AKK+ Sbjct 121 YLARELAALRLAIGAVPTRDYLRHELESLRDLVAELQSDQPDTE----TDGTERRAKKT 175 >gi|254823044|ref|ZP_05228045.1| hypothetical protein MintA_24160 [Mycobacterium intracellulare ATCC 13950] Length=180 Score = 270 bits (690), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 137/179 (77%), Positives = 148/179 (83%), Gaps = 0/179 (0%) Query 1 VSKPFAPRRLYTPRTSRTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNL 60 +SK APR LYTPRTSR +PRLDPE VG+ TESIARFFGTGRYLL+QT++V WI LNL Sbjct 1 MSKSTAPRGLYTPRTSRRYSPRLDPETVGQFTESIARFFGTGRYLLLQTVVVFVWIALNL 60 Query 61 FAVGLRWDPYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTE 120 FAV +RWDPYPFILLNLAFSTQA+YAAPLILLAQNRQE RDR EEDRRRAAQTKADTE Sbjct 61 FAVTVRWDPYPFILLNLAFSTQAAYAAPLILLAQNRQENRDRVTLEEDRRRAAQTKADTE 120 Query 121 YNARELAALRLAIGEVPTRDYLRHELDSLRALLAELQPTDPDVAQPRVADEAEQHAKKS 179 Y ARELAALRLA+GEV TR+YLRHELD LR LA LQP PD PR D E+ AKKS Sbjct 121 YLARELAALRLAVGEVVTREYLRHELDDLRERLANLQPGTPDSGPPRQGDNLERAAKKS 179 >gi|240173007|ref|ZP_04751665.1| hypothetical protein MkanA1_27081 [Mycobacterium kansasii ATCC 12478] Length=180 Score = 256 bits (653), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 138/179 (78%), Positives = 150/179 (84%), Gaps = 0/179 (0%) Query 1 VSKPFAPRRLYTPRTSRTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNL 60 +SKP APRRLYTPRTSR PRLDPE VG+TTE IARFFGTGRYLL+QTLLVL WI +NL Sbjct 1 MSKPPAPRRLYTPRTSRRFTPRLDPETVGQTTERIARFFGTGRYLLLQTLLVLIWIAVNL 60 Query 61 FAVGLRWDPYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTE 120 FA RWDPYPFILLNLAFSTQA+YAAPLILLAQNRQE RDR EEDRRRAAQTKADTE Sbjct 61 FAAHWRWDPYPFILLNLAFSTQAAYAAPLILLAQNRQENRDRVALEEDRRRAAQTKADTE 120 Query 121 YNARELAALRLAIGEVPTRDYLRHELDSLRALLAELQPTDPDVAQPRVADEAEQHAKKS 179 Y ARELAALRLAIGEVPTRDYLRHEL+SLR L+A+LQ PD + D E+ A+K+ Sbjct 121 YLARELAALRLAIGEVPTRDYLRHELESLRTLMADLQSARPDADPAQATDGTERRARKT 179 >gi|296170132|ref|ZP_06851730.1| integral membrane protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895194|gb|EFG74908.1| integral membrane protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=178 Score = 253 bits (646), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 125/156 (81%), Positives = 139/156 (90%), Gaps = 0/156 (0%) Query 1 VSKPFAPRRLYTPRTSRTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNL 60 +SK APRRLYTPRTSR +PRLDPEAVG+ TESIARFFGTGRYLLVQT+LV+ WI LNL Sbjct 1 MSKSSAPRRLYTPRTSRRYSPRLDPEAVGQITESIARFFGTGRYLLVQTVLVVAWIALNL 60 Query 61 FAVGLRWDPYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTE 120 FAV LRWDPYPFILLNLAFSTQA+YAAPLILLAQNRQE RDR E+DR RAAQTKADTE Sbjct 61 FAVRLRWDPYPFILLNLAFSTQAAYAAPLILLAQNRQENRDRVALEQDRHRAAQTKADTE 120 Query 121 YNARELAALRLAIGEVPTRDYLRHELDSLRALLAEL 156 + ARELA++RLA+GEV TR+YLRHEL+ LR+LLA L Sbjct 121 FLARELASVRLAVGEVVTREYLRHELEDLRSLLASL 156 >gi|254774248|ref|ZP_05215764.1| integral membrane protein [Mycobacterium avium subsp. avium ATCC 25291] Length=180 Score = 249 bits (637), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 136/179 (76%), Positives = 150/179 (84%), Gaps = 0/179 (0%) Query 1 VSKPFAPRRLYTPRTSRTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNL 60 +SK A RRLYTPRTSR +PRLDPE VG+ TESIARFFGTGRYLL+QT++V WIV+N+ Sbjct 1 MSKSTAVRRLYTPRTSRRYSPRLDPETVGQITESIARFFGTGRYLLLQTIVVAVWIVVNV 60 Query 61 FAVGLRWDPYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTE 120 FAV LRWDPYPFILLNLAFSTQA+YAAPLILLAQNRQE RDR EEDRRRAAQTKADTE Sbjct 61 FAVRLRWDPYPFILLNLAFSTQAAYAAPLILLAQNRQENRDRVALEEDRRRAAQTKADTE 120 Query 121 YNARELAALRLAIGEVPTRDYLRHELDSLRALLAELQPTDPDVAQPRVADEAEQHAKKS 179 Y ARELAA+RLA+GEV TR+YLRHELD LR LLAEL+P + D AD EQ AKKS Sbjct 121 YLARELAAVRLAVGEVVTREYLRHELDDLRELLAELRPQNADGEPVSGADNREQTAKKS 179 >gi|118466846|ref|YP_880614.1| integral membrane protein [Mycobacterium avium 104] gi|118168133|gb|ABK69030.1| integral membrane protein [Mycobacterium avium 104] Length=180 Score = 249 bits (635), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 136/179 (76%), Positives = 149/179 (84%), Gaps = 0/179 (0%) Query 1 VSKPFAPRRLYTPRTSRTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNL 60 +SK A RRLYTPRTSR +PRLDPE VG+ TESIARFFGTGRYLL+QT++V WIV+N+ Sbjct 1 MSKSTAVRRLYTPRTSRRYSPRLDPETVGQITESIARFFGTGRYLLLQTIVVAVWIVVNV 60 Query 61 FAVGLRWDPYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTE 120 FAV LRWDPYPFILLNLAFSTQA+YAAPLILLAQNRQE RDR EEDRRRAAQTKADTE Sbjct 61 FAVRLRWDPYPFILLNLAFSTQAAYAAPLILLAQNRQENRDRVALEEDRRRAAQTKADTE 120 Query 121 YNARELAALRLAIGEVPTRDYLRHELDSLRALLAELQPTDPDVAQPRVADEAEQHAKKS 179 Y ARELAA+RLA+GEV TR+YLRHELD LR LLAEL+P D AD EQ AKKS Sbjct 121 YLARELAAVRLAVGEVVTREYLRHELDDLRELLAELRPQSADGEPVSGADNREQTAKKS 179 >gi|41408649|ref|NP_961485.1| hypothetical protein MAP2551 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397007|gb|AAS04868.1| hypothetical protein MAP_2551 [Mycobacterium avium subsp. paratuberculosis K-10] gi|336458562|gb|EGO37529.1| putative membrane protein [Mycobacterium avium subsp. paratuberculosis S397] Length=180 Score = 249 bits (635), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 136/179 (76%), Positives = 149/179 (84%), Gaps = 0/179 (0%) Query 1 VSKPFAPRRLYTPRTSRTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNL 60 +SK A RRLYTPRTSR +PRLDPE VG+ TESIARFFGTGRYLL+QT++V WIV+N+ Sbjct 1 MSKSTAVRRLYTPRTSRRYSPRLDPETVGQITESIARFFGTGRYLLLQTIVVAVWIVVNV 60 Query 61 FAVGLRWDPYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTE 120 FAV LRWDPYPFILLNLAFSTQA+YAAPLILLAQNRQE RDR EEDRRRAAQTKADTE Sbjct 61 FAVRLRWDPYPFILLNLAFSTQAAYAAPLILLAQNRQENRDRVALEEDRRRAAQTKADTE 120 Query 121 YNARELAALRLAIGEVPTRDYLRHELDSLRALLAELQPTDPDVAQPRVADEAEQHAKKS 179 Y ARELAA+RLA+GEV TR+YLRHELD LR LLAEL+P D AD EQ AKKS Sbjct 121 YLARELAAVRLAVGEVVTREYLRHELDDLRELLAELRPQSADGEPVSDADNREQTAKKS 179 >gi|342862110|ref|ZP_08718753.1| integral membrane protein [Mycobacterium colombiense CECT 3035] gi|342130414|gb|EGT83729.1| integral membrane protein [Mycobacterium colombiense CECT 3035] Length=180 Score = 247 bits (631), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 127/179 (71%), Positives = 143/179 (80%), Gaps = 0/179 (0%) Query 1 VSKPFAPRRLYTPRTSRTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNL 60 +SK APR LYTPRTSR +PRLDPEAVG+ TESIARFFGTGRYLL+Q+++V+ WI NL Sbjct 1 MSKSSAPRGLYTPRTSRRYSPRLDPEAVGQITESIARFFGTGRYLLIQSVVVVAWIAFNL 60 Query 61 FAVGLRWDPYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTE 120 AV R+DPYPFILLNLAFSTQA+YAAPLILLAQNRQE RDR E+DRRRAA+TKADTE Sbjct 61 IAVAERFDPYPFILLNLAFSTQAAYAAPLILLAQNRQENRDRVALEQDRRRAAETKADTE 120 Query 121 YNARELAALRLAIGEVPTRDYLRHELDSLRALLAELQPTDPDVAQPRVADEAEQHAKKS 179 Y ARELAALRLA+GE TR+YLRHELD LR LL+ L P D D E+ AKKS Sbjct 121 YLARELAALRLAVGEGVTREYLRHELDDLRKLLSNLLPETADGDPVPAGDGLERTAKKS 179 >gi|333989841|ref|YP_004522455.1| hypothetical protein JDM601_1201 [Mycobacterium sp. JDM601] gi|333485809|gb|AEF35201.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=173 Score = 236 bits (602), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 118/157 (76%), Positives = 137/157 (88%), Gaps = 1/157 (0%) Query 8 RRLYTPRTSRTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNLFAVGLRW 67 +RL TPRTSR A R+DP+A+GR TES+ARFFGTGRYL +QT+LV+ WI+LN++AV L+W Sbjct 8 QRLSTPRTSRFPALRMDPDALGRFTESVARFFGTGRYLAIQTILVVGWILLNVYAVSLKW 67 Query 68 DPYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTEYNARELA 127 DPYPFILLNLAFSTQA+YAAPLILLAQNRQE RDR +EDRRRAAQTKADTEY ARELA Sbjct 68 DPYPFILLNLAFSTQAAYAAPLILLAQNRQENRDRVSLDEDRRRAAQTKADTEYLARELA 127 Query 128 ALRLAIGEVPTRDYLRHELDSLRALLAELQPTDPDVA 164 +LRLA+GEVPTRDYL HEL+ +R LL EL+P PD A Sbjct 128 SLRLAVGEVPTRDYLHHELERVRELLDELRPK-PDTA 163 >gi|120405441|ref|YP_955270.1| hypothetical protein Mvan_4489 [Mycobacterium vanbaalenii PYR-1] gi|119958259|gb|ABM15264.1| protein of unknown function DUF1003 [Mycobacterium vanbaalenii PYR-1] Length=181 Score = 233 bits (593), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 119/181 (66%), Positives = 138/181 (77%), Gaps = 1/181 (0%) Query 1 VSKPFAPRRLYTPRTSRTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNL 60 +S + +RL TPR SR LAPRLD EAVGR +E IARF GTGRYL +QT+LV+ W++LNL Sbjct 1 MSDASSRQRLDTPRVSRGLAPRLDIEAVGRFSERIARFLGTGRYLAIQTILVIVWVLLNL 60 Query 61 FAVGLRWDPYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTE 120 A +WDPYPFILLNLAFSTQA+YAAPLILLAQNRQE RDR EEDRRRA QTKADTE Sbjct 61 GAFAWQWDPYPFILLNLAFSTQAAYAAPLILLAQNRQENRDRVALEEDRRRAEQTKADTE 120 Query 121 YNARELAALRLAIGEVPTRDYLRHELDSLRALLAELQPTD-PDVAQPRVADEAEQHAKKS 179 + ARELAALRLA+GEV TRDYLR EL+ +R L+ EL D + D E+ +KKS Sbjct 121 FLARELAALRLAVGEVATRDYLRRELEEIRELIQELHSRDRAETGGASKRDAGERKSKKS 180 Query 180 G 180 G Sbjct 181 G 181 >gi|315443262|ref|YP_004076141.1| hypothetical protein Mspyr1_16390 [Mycobacterium sp. Spyr1] gi|315261565|gb|ADT98306.1| predicted membrane protein [Mycobacterium sp. Spyr1] Length=181 Score = 229 bits (583), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 118/179 (66%), Positives = 141/179 (79%), Gaps = 2/179 (1%) Query 1 VSKPFAPRRLYTPRTSRTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNL 60 +S+P + +RL TPR SR+ APRLD EAVGR +E IARF GTGRYL +QT++V+ WI+LNL Sbjct 1 MSEPSSRQRLDTPRVSRSFAPRLDIEAVGRFSEGIARFLGTGRYLAIQTIVVIVWILLNL 60 Query 61 FAVGLRWDPYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTE 120 A +WDPYPFILLNLAFSTQA+YAAPLILLAQNRQE RDR +EDRRRA QTKADTE Sbjct 61 GAFAWQWDPYPFILLNLAFSTQAAYAAPLILLAQNRQENRDRVALDEDRRRAQQTKADTE 120 Query 121 YNARELAALRLAIGEVPTRDYLRHELDSLRALLAELQPTDPDVAQPRVADEAEQHAKKS 179 + ARELAALRLA+GEV TRDYLR ELD +R ++ L D D A+P A + + A+KS Sbjct 121 FLARELAALRLAVGEVATRDYLRRELDEIREMIERLS-GDTD-AEPGRAGKQDGGARKS 177 >gi|118473368|ref|YP_889316.1| integral membrane protein [Mycobacterium smegmatis str. MC2 155] gi|118174655|gb|ABK75551.1| integral membrane protein [Mycobacterium smegmatis str. MC2 155] Length=182 Score = 229 bits (583), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 118/182 (65%), Positives = 139/182 (77%), Gaps = 2/182 (1%) Query 1 VSKPFAPRRLYTPRTSRTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNL 60 +S+P + +RL TPR R ++D EAVGR +ESIARF GTGRYL +QT+ V+ WI LNL Sbjct 1 MSEPTSRQRLDTPRVWRGPRLQVDVEAVGRVSESIARFLGTGRYLAIQTIFVVVWIALNL 60 Query 61 FAVGLRWDPYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTE 120 FAVG WDPYPFILLNLAFSTQA+YAAPLILLAQNRQE RDR EEDRRRA QTKADTE Sbjct 61 FAVGYEWDPYPFILLNLAFSTQAAYAAPLILLAQNRQENRDRVSLEEDRRRAEQTKADTE 120 Query 121 YNARELAALRLAIGEVPTRDYLRHELDSLRALLAELQ--PTDPDVAQPRVADEAEQHAKK 178 + ARELA+LRLAIGEV TRDYLR EL+ +R +++ELQ P D A D E+ +K+ Sbjct 121 FLARELASLRLAIGEVATRDYLRRELEEIRDMISELQQPPPTTDRAGSGKGDGGERRSKR 180 Query 179 SG 180 G Sbjct 181 GG 182 >gi|145222795|ref|YP_001133473.1| hypothetical protein Mflv_2207 [Mycobacterium gilvum PYR-GCK] gi|145215281|gb|ABP44685.1| protein of unknown function DUF1003 [Mycobacterium gilvum PYR-GCK] Length=181 Score = 228 bits (580), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 115/179 (65%), Positives = 141/179 (79%), Gaps = 2/179 (1%) Query 1 VSKPFAPRRLYTPRTSRTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNL 60 +S+P + +RL TPR SR+ APRLD EAVGR +E IARF GTGRYL +QT++V+ WI+LNL Sbjct 1 MSEPSSRQRLDTPRVSRSFAPRLDIEAVGRFSEGIARFLGTGRYLAIQTIVVIVWILLNL 60 Query 61 FAVGLRWDPYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTE 120 A +WDPYPFILLNLAFSTQA+YAAPLILLAQNRQE RDR +EDRRRA QTKADTE Sbjct 61 GAFAWQWDPYPFILLNLAFSTQAAYAAPLILLAQNRQENRDRVALDEDRRRAQQTKADTE 120 Query 121 YNARELAALRLAIGEVPTRDYLRHELDSLRALLAELQPTDPDVAQPRVADEAEQHAKKS 179 + ARELAALRLA+GEV TRDYLR ELD +R ++ +L + A+P A + + A+K+ Sbjct 121 FLARELAALRLAVGEVATRDYLRRELDEIREMIEKL--SGEKDAEPGRAGKQDTGARKT 177 >gi|169628614|ref|YP_001702263.1| hypothetical protein MAB_1523c [Mycobacterium abscessus ATCC 19977] gi|169240581|emb|CAM61609.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=162 Score = 226 bits (576), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 114/160 (72%), Positives = 128/160 (80%), Gaps = 0/160 (0%) Query 1 VSKPFAPRRLYTPRTSRTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNL 60 +S A +RL TPRTSR L+ LD EAVGR +E+IARF GTGRYL +QT+ V+ WI LNL Sbjct 1 MSDASARQRLDTPRTSRRLSLGLDVEAVGRVSENIARFLGTGRYLAIQTIFVVVWIALNL 60 Query 61 FAVGLRWDPYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTE 120 FAVGL WDPYPFILLNLAFSTQA+YAAPLILLAQNRQE RDR EEDRRRA QTKADTE Sbjct 61 FAVGLEWDPYPFILLNLAFSTQAAYAAPLILLAQNRQENRDRVALEEDRRRAEQTKADTE 120 Query 121 YNARELAALRLAIGEVPTRDYLRHELDSLRALLAELQPTD 160 Y ARELAALRLA+GEV TRDYLR EL+ L L ++ + Sbjct 121 YLARELAALRLAVGEVATRDYLRRELEQLHEALESIREKN 160 >gi|312138881|ref|YP_004006217.1| integral membrane protein [Rhodococcus equi 103S] gi|311888220|emb|CBH47532.1| putative integral membrane protein [Rhodococcus equi 103S] Length=179 Score = 219 bits (559), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 108/149 (73%), Positives = 126/149 (85%), Gaps = 0/149 (0%) Query 8 RRLYTPRTSRTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNLFAVGLRW 67 +RL TPR +R L +D EAVGR +E+IARF GTGRYLL+QT++V+ W+ LN+FAV L+W Sbjct 8 QRLETPRGTRGLRFHIDVEAVGRVSENIARFLGTGRYLLIQTVIVIVWVALNVFAVRLQW 67 Query 68 DPYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTEYNARELA 127 DPYPFILLNLAFSTQA+YAAPLILLAQNRQE RDR EEDR RAAQTKADTE+ ARELA Sbjct 68 DPYPFILLNLAFSTQAAYAAPLILLAQNRQENRDRVSLEEDRARAAQTKADTEFLARELA 127 Query 128 ALRLAIGEVPTRDYLRHELDSLRALLAEL 156 ALRLA+GEV TRDYLR ELD +R +L +L Sbjct 128 ALRLAVGEVATRDYLRRELDDIRQMLTDL 156 >gi|325676414|ref|ZP_08156092.1| integral membrane protein [Rhodococcus equi ATCC 33707] gi|325552592|gb|EGD22276.1| integral membrane protein [Rhodococcus equi ATCC 33707] Length=179 Score = 219 bits (559), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 108/149 (73%), Positives = 126/149 (85%), Gaps = 0/149 (0%) Query 8 RRLYTPRTSRTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNLFAVGLRW 67 +RL TPR +R L +D EAVGR +E+IARF GTGRYLL+QT++V+ W+ LN+FAV L+W Sbjct 8 QRLETPRGTRGLRFHIDVEAVGRVSENIARFLGTGRYLLIQTVIVIVWVALNVFAVRLQW 67 Query 68 DPYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTEYNARELA 127 DPYPFILLNLAFSTQA+YAAPLILLAQNRQE RDR EEDR RAAQTKADTE+ ARELA Sbjct 68 DPYPFILLNLAFSTQAAYAAPLILLAQNRQENRDRVSLEEDRARAAQTKADTEFLARELA 127 Query 128 ALRLAIGEVPTRDYLRHELDSLRALLAEL 156 ALRLA+GEV TRDYLR ELD +R +L +L Sbjct 128 ALRLAVGEVATRDYLRRELDDIRQMLTDL 156 >gi|226307638|ref|YP_002767598.1| hypothetical protein RER_41510 [Rhodococcus erythropolis PR4] gi|229493733|ref|ZP_04387515.1| integral membrane protein [Rhodococcus erythropolis SK121] gi|226186755|dbj|BAH34859.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] gi|229319333|gb|EEN85172.1| integral membrane protein [Rhodococcus erythropolis SK121] Length=180 Score = 216 bits (550), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 105/153 (69%), Positives = 124/153 (82%), Gaps = 0/153 (0%) Query 2 SKPFAPRRLYTPRTSRTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNLF 61 S A +RL TPR SR D EAVGR +E IARF GTGRYL +QT++V+ WI++N+F Sbjct 6 SSTTARQRLETPRGSRRFNLDFDVEAVGRVSERIARFLGTGRYLAIQTIIVIVWILINVF 65 Query 62 AVGLRWDPYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTEY 121 AV L+WDPYPFILLNLAFSTQA+YAAPLILLAQNRQE RDR EEDR RA QTKADTE+ Sbjct 66 AVALQWDPYPFILLNLAFSTQAAYAAPLILLAQNRQENRDRVSLEEDRSRAEQTKADTEF 125 Query 122 NARELAALRLAIGEVPTRDYLRHELDSLRALLA 154 ARELAALR+A+GEV TRDYLR EL+ ++++LA Sbjct 126 LARELAALRIAVGEVATRDYLRRELEEIKSILA 158 >gi|343928016|ref|ZP_08767481.1| hypothetical protein GOALK_100_00200 [Gordonia alkanivorans NBRC 16433] gi|343762024|dbj|GAA14407.1| hypothetical protein GOALK_100_00200 [Gordonia alkanivorans NBRC 16433] Length=174 Score = 206 bits (524), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 101/148 (69%), Positives = 118/148 (80%), Gaps = 0/148 (0%) Query 8 RRLYTPRTSRTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNLFAVGLRW 67 R+L P T RT++ LD + VG +E +ARF GTGRYLL+QT++V+ WI LNL AV +RW Sbjct 7 RKLDIPSTRRTISFNLDSDVVGMYSERVARFLGTGRYLLIQTVIVIVWIALNLVAVTIRW 66 Query 68 DPYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTEYNARELA 127 DPYPFILLNLAFSTQA+YAAPLILLAQNRQE RDR EEDR R+AQTKADTE+ ARELA Sbjct 67 DPYPFILLNLAFSTQAAYAAPLILLAQNRQENRDRVALEEDRMRSAQTKADTEFLARELA 126 Query 128 ALRLAIGEVPTRDYLRHELDSLRALLAE 155 A+RLA+G+ TRDYLR ELD L L E Sbjct 127 AVRLAVGDTVTRDYLRKELDDLLDELTE 154 >gi|258651903|ref|YP_003201059.1| hypothetical protein Namu_1680 [Nakamurella multipartita DSM 44233] gi|258555128|gb|ACV78070.1| protein of unknown function DUF1003 [Nakamurella multipartita DSM 44233] Length=188 Score = 205 bits (521), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 105/154 (69%), Positives = 120/154 (78%), Gaps = 0/154 (0%) Query 8 RRLYTPRTSRTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNLFAVGLRW 67 RRL PR+SR + +DPE GR +E +ARF GTG +L QTL+V+ WI LNLFAV +W Sbjct 8 RRLDQPRSSRRFSMEIDPETFGRLSERLARFLGTGTFLFWQTLVVIIWIALNLFAVSYQW 67 Query 68 DPYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTEYNARELA 127 DPYPFILLNLAFSTQA+YAAPLILLAQNRQ+ RDR EEDR RAAQTK DTE+ ARELA Sbjct 68 DPYPFILLNLAFSTQAAYAAPLILLAQNRQDDRDRISLEEDRSRAAQTKEDTEFIARELA 127 Query 128 ALRLAIGEVPTRDYLRHELDSLRALLAELQPTDP 161 ALR+AIGEV TRDYLR EL+ LR L E + DP Sbjct 128 ALRVAIGEVATRDYLRGELERLREDLEEPERGDP 161 >gi|54026691|ref|YP_120933.1| hypothetical protein nfa47180 [Nocardia farcinica IFM 10152] gi|54018199|dbj|BAD59569.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=198 Score = 204 bits (520), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 105/177 (60%), Positives = 129/177 (73%), Gaps = 8/177 (4%) Query 4 PFAPRRLYTPRTSRTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNLFAV 63 P A +RL TP +R D EA+ R++E +ARF GTGRYL +QT++V+ WI LN+F V Sbjct 6 PTARQRLETPMQNR-FRFDWDAEALARSSERVARFLGTGRYLAIQTVVVVVWIALNVFVV 64 Query 64 GLRWDPYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTEYNA 123 LRWDPYPFILLNLAFSTQA+YAAPLILLAQNRQ+ RDR EEDR RAAQTKADTE+ A Sbjct 65 ALRWDPYPFILLNLAFSTQAAYAAPLILLAQNRQDNRDRVALEEDRMRAAQTKADTEFLA 124 Query 124 RELAALRLAIGEVPTRDYLRHELDSLRALLAELQPTDPDVAQPRVADEAEQHAKKSG 180 RELAALR+A+G+V TRDYLR ELD +R +L ++ V D++ K+G Sbjct 125 RELAALRIAVGDVATRDYLRRELDEVREMLDRIEAAT-------VGDDSGSRGGKAG 174 >gi|108800952|ref|YP_641149.1| hypothetical protein Mmcs_3988 [Mycobacterium sp. MCS] gi|119870092|ref|YP_940044.1| hypothetical protein Mkms_4062 [Mycobacterium sp. KMS] gi|126436577|ref|YP_001072268.1| hypothetical protein Mjls_4002 [Mycobacterium sp. JLS] gi|108771371|gb|ABG10093.1| protein of unknown function DUF1003 [Mycobacterium sp. MCS] gi|119696181|gb|ABL93254.1| protein of unknown function DUF1003 [Mycobacterium sp. KMS] gi|126236377|gb|ABN99777.1| protein of unknown function DUF1003 [Mycobacterium sp. JLS] Length=171 Score = 204 bits (519), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 110/172 (64%), Positives = 133/172 (78%), Gaps = 9/172 (5%) Query 9 RLYTPRTSRTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNLFAVGLRWD 68 RL TPR+ R ++ +D EAVG+ E +ARF GTGRYL VQT++V+ WI LN+FA+ L+WD Sbjct 9 RLDTPRSPRRISFNVDREAVGQVGERVARFLGTGRYLAVQTIIVIVWIALNMFAISLQWD 68 Query 69 PYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTEYNARELAA 128 PYPFILLNLAFSTQA+YAAPLILLAQNRQE RDR +EDRRRAAQTKADTEY ARELAA Sbjct 69 PYPFILLNLAFSTQAAYAAPLILLAQNRQENRDRVSLDEDRRRAAQTKADTEYLARELAA 128 Query 129 LRLAIGEVPTRDYLRHELDSLRALLAELQPTDPDVAQPRVADEAEQHAKKSG 180 LRLA+GEV TRDYLR EL+ LR ++A L + D ++ +K+SG Sbjct 129 LRLAVGEVATRDYLRRELEELREMVATLLAAN---------DVDDRRSKRSG 171 >gi|300783000|ref|YP_003763291.1| hypothetical protein AMED_1072 [Amycolatopsis mediterranei U32] gi|299792514|gb|ADJ42889.1| conserved hypothetical protein [Amycolatopsis mediterranei U32] gi|340524377|gb|AEK39582.1| hypothetical protein RAM_05450 [Amycolatopsis mediterranei S699] Length=166 Score = 202 bits (515), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 103/151 (69%), Positives = 119/151 (79%), Gaps = 1/151 (0%) Query 8 RRLYTPRTSRTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNLFAVGLRW 67 RRL PR +DP+ GR +E +ARF GTG+YL QTL+V+ W+VLN+ AV L+W Sbjct 8 RRLDQPRGQNRFRLNIDPDTFGRLSERLARFLGTGKYLFWQTLIVIVWVVLNITAVSLQW 67 Query 68 DPYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTEYNARELA 127 DPYPFILLNLAFSTQA+YAAPLILLAQNRQ+ RDR +EDR RAAQTKADTEY ARELA Sbjct 68 DPYPFILLNLAFSTQAAYAAPLILLAQNRQDDRDRVSLDEDRNRAAQTKADTEYLARELA 127 Query 128 ALRLAIGEVPTRDYLRHELDSLRALLAELQP 158 ALRLA+GEV TRDYLR ELD LR L+ +QP Sbjct 128 ALRLAVGEVATRDYLRSELDRLREDLS-IQP 157 >gi|262201804|ref|YP_003273012.1| hypothetical protein Gbro_1863 [Gordonia bronchialis DSM 43247] gi|262085151|gb|ACY21119.1| protein of unknown function DUF1003 [Gordonia bronchialis DSM 43247] Length=176 Score = 202 bits (514), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 103/163 (64%), Positives = 122/163 (75%), Gaps = 0/163 (0%) Query 8 RRLYTPRTSRTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNLFAVGLRW 67 R+L TP T R ++ LD + +G +E IARF GTGRYL +QT++V+ WI NL AV LR+ Sbjct 6 RKLDTPSTRRGISFNLDSDVIGMHSERIARFLGTGRYLAIQTVIVILWIAFNLLAVSLRF 65 Query 68 DPYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTEYNARELA 127 DPYPFILLNLAFSTQA+YAAPLILLAQNRQE RDR +EDR RAAQTKADTE+ ARELA Sbjct 66 DPYPFILLNLAFSTQAAYAAPLILLAQNRQENRDRVALDEDRARAAQTKADTEFLARELA 125 Query 128 ALRLAIGEVPTRDYLRHELDSLRALLAELQPTDPDVAQPRVAD 170 A+RLA+G+ +RDYLR ELD L L E PD QP+ D Sbjct 126 AVRLAVGDTVSRDYLRKELDDLLDELTERLTRGPDDGQPQRPD 168 >gi|284989709|ref|YP_003408263.1| hypothetical protein Gobs_1133 [Geodermatophilus obscurus DSM 43160] gi|284062954|gb|ADB73892.1| protein of unknown function DUF1003 [Geodermatophilus obscurus DSM 43160] Length=173 Score = 200 bits (508), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 102/144 (71%), Positives = 118/144 (82%), Gaps = 2/144 (1%) Query 8 RRLYTPRTSRTLAP--RLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNLFAVGL 65 RRL PR +R RLDP+AVGR E+IARF GTGR+L VQT++V+ WI LN+FAV L Sbjct 5 RRLDVPRGARGFGNVLRLDPDAVGRFAEAIARFLGTGRFLTVQTVIVIVWIALNVFAVRL 64 Query 66 RWDPYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTEYNARE 125 +WDPYPFILLNLAFSTQA+YAAPLILLAQNRQ RDR EEDR RAAQT+ADTEY ARE Sbjct 65 QWDPYPFILLNLAFSTQAAYAAPLILLAQNRQADRDRVQAEEDRARAAQTRADTEYLARE 124 Query 126 LAALRLAIGEVPTRDYLRHELDSL 149 LAALR+AIGE+ TRD++R EL+ L Sbjct 125 LAALRVAIGELATRDFIRGELNRL 148 >gi|256374948|ref|YP_003098608.1| hypothetical protein Amir_0801 [Actinosynnema mirum DSM 43827] gi|255919251|gb|ACU34762.1| protein of unknown function DUF1003 [Actinosynnema mirum DSM 43827] Length=196 Score = 199 bits (507), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 99/147 (68%), Positives = 116/147 (79%), Gaps = 0/147 (0%) Query 3 KPFAPRRLYTPRTSRTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNLFA 62 +P RRL PR++ LDP+A GR +E +ARF GTG +L QT++V+ WI +NL A Sbjct 3 EPQGRRRLDQPRSAGRFRLSLDPDAFGRLSERLARFLGTGTFLFWQTIIVVAWIAVNLLA 62 Query 63 VGLRWDPYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTEYN 122 V LRWDPYPFILLNLAFSTQA+YAAPLILLAQNRQ+ RDR EEDRRRA QTKADTEY Sbjct 63 VSLRWDPYPFILLNLAFSTQAAYAAPLILLAQNRQDDRDRVSLEEDRRRAEQTKADTEYL 122 Query 123 ARELAALRLAIGEVPTRDYLRHELDSL 149 ARELAALR+A+GEV TRD+LR ELD + Sbjct 123 ARELAALRIAVGEVATRDFLRGELDRV 149 >gi|302524355|ref|ZP_07276697.1| integral membrane protein [Streptomyces sp. AA4] gi|302433250|gb|EFL05066.1| integral membrane protein [Streptomyces sp. AA4] Length=165 Score = 198 bits (503), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 100/138 (73%), Positives = 111/138 (81%), Gaps = 0/138 (0%) Query 8 RRLYTPRTSRTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNLFAVGLRW 67 RRL PR+ L +DP+ GR TE IARF GTG+YL QTL+V+ WI LNL A+ L+W Sbjct 8 RRLDQPRSQARLRLNIDPDTFGRFTERIARFLGTGKYLFWQTLIVVVWITLNLAALSLQW 67 Query 68 DPYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTEYNARELA 127 DPYPFILLNLAFSTQA+YAAPLILLAQNRQ+ RDR EEDR RAAQTKADTEY ARELA Sbjct 68 DPYPFILLNLAFSTQAAYAAPLILLAQNRQDDRDRVSLEEDRTRAAQTKADTEYLARELA 127 Query 128 ALRLAIGEVPTRDYLRHE 145 ALRLA+GEV TRDYLR E Sbjct 128 ALRLAVGEVATRDYLRSE 145 >gi|331694908|ref|YP_004331147.1| hypothetical protein Psed_1043 [Pseudonocardia dioxanivorans CB1190] gi|326949597|gb|AEA23294.1| protein of unknown function DUF1003 [Pseudonocardia dioxanivorans CB1190] Length=172 Score = 194 bits (493), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 99/142 (70%), Positives = 114/142 (81%), Gaps = 1/142 (0%) Query 8 RRLYTPRTSRTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNLFAVGLRW 67 R+L P +SR +DPE R +E IARF GTG++L +QT++V+ WI LNLFAV L+W Sbjct 8 RKLDQPVSSRRRF-EVDPEGFARLSERIARFLGTGQFLAIQTVIVVVWIGLNLFAVSLQW 66 Query 68 DPYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTEYNARELA 127 DPYPFILLNLAFSTQA+YAAPLILLAQNRQ+ RDR EEDR RA +TKADTEY ARELA Sbjct 67 DPYPFILLNLAFSTQAAYAAPLILLAQNRQDDRDRVALEEDRTRAERTKADTEYLARELA 126 Query 128 ALRLAIGEVPTRDYLRHELDSL 149 ALR+AIGEV TRDYLR ELD L Sbjct 127 ALRIAIGEVATRDYLRSELDKL 148 >gi|227487905|ref|ZP_03918221.1| integral membrane protein [Corynebacterium glucuronolyticum ATCC 51867] gi|227542545|ref|ZP_03972594.1| integral membrane protein [Corynebacterium glucuronolyticum ATCC 51866] gi|227092111|gb|EEI27423.1| integral membrane protein [Corynebacterium glucuronolyticum ATCC 51867] gi|227181743|gb|EEI62715.1| integral membrane protein [Corynebacterium glucuronolyticum ATCC 51866] Length=210 Score = 193 bits (490), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 99/171 (58%), Positives = 122/171 (72%), Gaps = 20/171 (11%) Query 22 RLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNLFAVGLRWDPYPFILLNLAFST 81 R+D +AVG E +ARFFGTG YL+ QT++V+TWI+LN+ + WDPYPFILLNLAFST Sbjct 27 RMDADAVGAVAEKVARFFGTGEYLVWQTIIVVTWILLNITGLAFAWDPYPFILLNLAFST 86 Query 82 QASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTEYNARELAALRLAIGEVPTRDY 141 QA+Y+APLILLAQNRQE RDR +EDRRRA QTKADTEY ARELA+LRLA+GE TRDY Sbjct 87 QAAYSAPLILLAQNRQEVRDRHSLQEDRRRAQQTKADTEYLARELASLRLAVGETVTRDY 146 Query 142 LRHELDSLRALLAELQ--------------------PTDPDVAQPRVADEA 172 LR +L+ L+A+L L+ PT D+A PR D++ Sbjct 147 LRDQLEDLQAVLERLEAKIDDESAARRSELSSLLTDPTQGDLALPRRKDDS 197 >gi|19552350|ref|NP_600352.1| hypothetical protein NCgl1079 [Corynebacterium glutamicum ATCC 13032] gi|62390014|ref|YP_225416.1| hypothetical protein cg1275 [Corynebacterium glutamicum ATCC 13032] gi|145295267|ref|YP_001138088.1| hypothetical protein cgR_1208 [Corynebacterium glutamicum R] gi|21323891|dbj|BAB98517.1| Hypothetical membrane protein [Corynebacterium glutamicum ATCC 13032] gi|41325350|emb|CAF19830.1| conserved hypothetical membrane protein [Corynebacterium glutamicum ATCC 13032] gi|140845187|dbj|BAF54186.1| hypothetical protein [Corynebacterium glutamicum R] gi|344045760|gb|EGV41430.1| hypothetical protein CgS9114_03558 [Corynebacterium glutamicum S9114] Length=193 Score = 192 bits (489), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 93/155 (60%), Positives = 112/155 (73%), Gaps = 0/155 (0%) Query 22 RLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNLFAVGLRWDPYPFILLNLAFST 81 + D + +G E +ARFFGTG+YL QT+ V+ WI LN+ WDPYPFILLNLAFST Sbjct 21 KFDDDTIGAYAEKVARFFGTGQYLFWQTIFVVVWIFLNIGGWAWSWDPYPFILLNLAFST 80 Query 82 QASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTEYNARELAALRLAIGEVPTRDY 141 QA+YAAPLILLAQNRQE RD+ DRRRA +TKADTE+ ARELA +RLA+G+ TRDY Sbjct 81 QAAYAAPLILLAQNRQEDRDKHTILADRRRAEETKADTEFLARELAGVRLALGDTVTRDY 140 Query 142 LRHELDSLRALLAELQPTDPDVAQPRVADEAEQHA 176 LRHEL+ LR LL ++ D A R+AD EQH Sbjct 141 LRHELEDLRGLLDRIEAKLDDEAASRIADRHEQHG 175 >gi|225022876|ref|ZP_03712068.1| hypothetical protein CORMATOL_02922 [Corynebacterium matruchotii ATCC 33806] gi|305681925|ref|ZP_07404729.1| conserved hypothetical protein [Corynebacterium matruchotii ATCC 14266] gi|224944099|gb|EEG25308.1| hypothetical protein CORMATOL_02922 [Corynebacterium matruchotii ATCC 33806] gi|305658398|gb|EFM47901.1| conserved hypothetical protein [Corynebacterium matruchotii ATCC 14266] Length=187 Score = 192 bits (487), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 95/149 (64%), Positives = 113/149 (76%), Gaps = 1/149 (0%) Query 10 LYTPRTS-RTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNLFAVGLRWD 68 L TPR S + R+D + VG E +ARFFGTGRYL+ QT+ V W+VLNL A +WD Sbjct 4 LDTPRLSGKKTYFRIDDDTVGAYAEKVARFFGTGRYLMWQTVFVTVWVVLNLGATWWKWD 63 Query 69 PYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTEYNARELAA 128 PYPFILLNLAFSTQA+YAAPLILLAQNRQE RDR EDRRRA +TK++TE+ REL Sbjct 64 PYPFILLNLAFSTQAAYAAPLILLAQNRQEDRDRISLNEDRRRAFETKSNTEFITRELTG 123 Query 129 LRLAIGEVPTRDYLRHELDSLRALLAELQ 157 LRLA+GEV TRDYLRHELD LR ++ ++ Sbjct 124 LRLAVGEVVTRDYLRHELDDLRTMMERIE 152 >gi|296138921|ref|YP_003646164.1| hypothetical protein Tpau_1194 [Tsukamurella paurometabola DSM 20162] gi|296027055|gb|ADG77825.1| protein of unknown function DUF1003 [Tsukamurella paurometabola DSM 20162] Length=175 Score = 191 bits (485), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 96/163 (59%), Positives = 121/163 (75%), Gaps = 4/163 (2%) Query 9 RLYTPRTSRTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNLFAVGLRWD 68 RL TPR +R++ L + +G+ E +ARF GTGRYL +QT++V+ WI +N+ V R+D Sbjct 6 RLDTPRLNRSIGLNLGEDMIGQGAERVARFLGTGRYLAIQTVIVVVWIAINVSWVAFRFD 65 Query 69 PYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTEYNARELAA 128 PYPFILLNLAFSTQA+YAAPLILLAQNRQE RDR +EDR RAAQTKADTE+ ARELA+ Sbjct 66 PYPFILLNLAFSTQAAYAAPLILLAQNRQESRDRVSLDEDRMRAAQTKADTEFLARELAS 125 Query 129 LRLAIGEVPTRDYLRHELD----SLRALLAELQPTDPDVAQPR 167 +RLA+GE +RDY+R ELD L AL A LQ + +P+ Sbjct 126 VRLAVGEAASRDYIRRELDDVHEKLDALTALLQSLEHSQHKPK 168 >gi|226365453|ref|YP_002783236.1| hypothetical protein ROP_60440 [Rhodococcus opacus B4] gi|226243943|dbj|BAH54291.1| hypothetical membrane protein [Rhodococcus opacus B4] Length=173 Score = 191 bits (485), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 107/151 (71%), Positives = 124/151 (83%), Gaps = 0/151 (0%) Query 9 RLYTPRTSRTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNLFAVGLRWD 68 RL TPR +R D EAVGR +E+ ARF GTGRYL++QT++V+ WIV+N+FAV L+WD Sbjct 18 RLDTPRGTRRFRVSYDVEAVGRASENFARFLGTGRYLMIQTVIVIVWIVINVFAVRLQWD 77 Query 69 PYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTEYNARELAA 128 PYPFILLNLAFSTQA+YAAPLILLAQNRQE RDR EEDR RA QTKADTE+ ARELAA Sbjct 78 PYPFILLNLAFSTQAAYAAPLILLAQNRQENRDRVSLEEDRSRAEQTKADTEFLARELAA 137 Query 129 LRLAIGEVPTRDYLRHELDSLRALLAELQPT 159 LR+AIGEV TRDYLR ELD +R LLA+ + T Sbjct 138 LRIAIGEVATRDYLRRELDEIRTLLADEEDT 168 >gi|68536462|ref|YP_251167.1| hypothetical protein jk1376 [Corynebacterium jeikeium K411] gi|260577592|ref|ZP_05845531.1| integral membrane protein [Corynebacterium jeikeium ATCC 43734] gi|68264061|emb|CAI37549.1| hypothetical protein jk1376 [Corynebacterium jeikeium K411] gi|258604316|gb|EEW17554.1| integral membrane protein [Corynebacterium jeikeium ATCC 43734] Length=178 Score = 189 bits (481), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 99/181 (55%), Positives = 127/181 (71%), Gaps = 5/181 (2%) Query 1 VSKPFAPRRLYTPR--TSRTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVL 58 +++ F+ L TP T + LD + VGR E+IARF GTG+YL QT++V+ WI L Sbjct 1 MARKFSRADLDTPTDATRQKKKFNLDGDGVGRVAENIARFLGTGKYLFYQTVIVVAWIGL 60 Query 59 NLFAVGLRWDPYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKAD 118 NL + WDPYPFILLNLAFSTQA+YAAPLILLAQNRQ+ RDR +EDRRRAA+TKAD Sbjct 61 NLGGMWWNWDPYPFILLNLAFSTQAAYAAPLILLAQNRQDDRDRVSLDEDRRRAAETKAD 120 Query 119 TEYNARELAALRLAIGEVPTRDYLRHELDSLRALLAELQPTDPDVAQPRVADEAEQHAKK 178 TE+ ARE+A++R+A+GE TRDYLR EL+ L L LQ D + R +EA A++ Sbjct 121 TEFLAREVASVRIAVGETVTRDYLRRELEELNVL---LQRIDDKIDDSRRDEEARGDARE 177 Query 179 S 179 + Sbjct 178 N 178 >gi|111022947|ref|YP_705919.1| hypothetical protein RHA1_ro05984 [Rhodococcus jostii RHA1] gi|110822477|gb|ABG97761.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=173 Score = 189 bits (480), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 104/151 (69%), Positives = 124/151 (83%), Gaps = 0/151 (0%) Query 9 RLYTPRTSRTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNLFAVGLRWD 68 RL TPR +R D EAVGR +E+ ARF GTGRYL++QT++V+ WI++N+FAV L+WD Sbjct 18 RLDTPRGTRRFRVTYDVEAVGRASENFARFLGTGRYLMIQTVVVIVWIIINVFAVRLQWD 77 Query 69 PYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTEYNARELAA 128 PYPFILLNLAFSTQA+YAAPLILLAQNRQE RDR EEDR RA QTKADTE+ ARELAA Sbjct 78 PYPFILLNLAFSTQAAYAAPLILLAQNRQENRDRVSLEEDRSRAEQTKADTEFLARELAA 137 Query 129 LRLAIGEVPTRDYLRHELDSLRALLAELQPT 159 LR+AIGEV TRDYLR ELD +++LL + + T Sbjct 138 LRIAIGEVATRDYLRRELDEIKSLLGDEEDT 168 >gi|25027739|ref|NP_737793.1| hypothetical protein CE1183 [Corynebacterium efficiens YS-314] gi|259506860|ref|ZP_05749760.1| integral membrane protein [Corynebacterium efficiens YS-314] gi|23493022|dbj|BAC17993.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|259165492|gb|EEW50046.1| integral membrane protein [Corynebacterium efficiens YS-314] Length=184 Score = 188 bits (478), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 92/159 (58%), Positives = 111/159 (70%), Gaps = 0/159 (0%) Query 22 RLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNLFAVGLRWDPYPFILLNLAFST 81 + D + VG E +ARFFGTG+YL QT+ V+ WI+LN+ WDPYPFILLNLAFST Sbjct 22 KFDDDTVGAYAEKVARFFGTGQYLFWQTIFVIIWIMLNIGGFAWNWDPYPFILLNLAFST 81 Query 82 QASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTEYNARELAALRLAIGEVPTRDY 141 QA+YAAPLILLAQNRQE RD++ DRRRA +TKADTE+ RELA +RLA+GE+ TRDY Sbjct 82 QAAYAAPLILLAQNRQEDRDKSTILADRRRAEETKADTEFLTRELAGVRLAVGEMVTRDY 141 Query 142 LRHELDSLRALLAELQPTDPDVAQPRVADEAEQHAKKSG 180 LRHELD LR L L+ D R D + +A G Sbjct 142 LRHELDDLRGFLERLEAKLDDAVASRNDDPHDLNAPTQG 180 >gi|326382042|ref|ZP_08203735.1| hypothetical protein SCNU_03822 [Gordonia neofelifaecis NRRL B-59395] gi|326199468|gb|EGD56649.1| hypothetical protein SCNU_03822 [Gordonia neofelifaecis NRRL B-59395] Length=169 Score = 187 bits (476), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 102/165 (62%), Positives = 116/165 (71%), Gaps = 9/165 (5%) Query 6 APRRLYTPRTSRT-LAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNLFAVG 64 A R L TP R LD + VG +E IARF GTGRYLL+QT++V+ WI+LN+ Sbjct 4 AGRHLDTPSPRRGRFNFNLDSDVVGVYSERIARFLGTGRYLLIQTVIVVVWILLNIGIFA 63 Query 65 LRWDPYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTEYNAR 124 WDPYPFILLNLAFSTQA+YAAPLILLAQNRQE RDR EEDR RAAQTK DTE+ AR Sbjct 64 FEWDPYPFILLNLAFSTQAAYAAPLILLAQNRQENRDRVSLEEDRARAAQTKDDTEFLAR 123 Query 125 ELAALRLAIGEVPTRDYLRHELDSL--------RALLAELQPTDP 161 ELAA+RLA+G+ TRDYLR ELD L A AE + TDP Sbjct 124 ELAAVRLAVGDTVTRDYLRRELDDLVDELVDRIVAKTAEAEETDP 168 >gi|334696580|gb|AEG81377.1| hypothetical protein CULC809_00841 [Corynebacterium ulcerans 809] Length=199 Score = 187 bits (475), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 91/148 (62%), Positives = 109/148 (74%), Gaps = 0/148 (0%) Query 22 RLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNLFAVGLRWDPYPFILLNLAFST 81 +LD + VG E +ARFFGTG YL+ QT+ V W+VLN +WDPYPFILLNLAFST Sbjct 22 KLDDDTVGAYAEKVARFFGTGTYLMWQTIFVAVWVVLNCGVFVWQWDPYPFILLNLAFST 81 Query 82 QASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTEYNARELAALRLAIGEVPTRDY 141 QA+YAAPLILLAQNRQE RDR EDRRRA +TKADTE+ RELA LRLA+G++ +RDY Sbjct 82 QAAYAAPLILLAQNRQEDRDRVSLNEDRRRAFETKADTEFITRELAGLRLAVGDMVSRDY 141 Query 142 LRHELDSLRALLAELQPTDPDVAQPRVA 169 LRHEL+ L +L L+ D A R+A Sbjct 142 LRHELEDLHNMLERLEAKLDDEAASRIA 169 >gi|337290467|ref|YP_004629488.1| hypothetical protein CULC22_00856 [Corynebacterium ulcerans BR-AD22] gi|334698773|gb|AEG83569.1| hypothetical protein CULC22_00856 [Corynebacterium ulcerans BR-AD22] Length=199 Score = 187 bits (475), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 91/148 (62%), Positives = 109/148 (74%), Gaps = 0/148 (0%) Query 22 RLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNLFAVGLRWDPYPFILLNLAFST 81 +LD + VG E +ARFFGTG YL+ QT+ V W+VLN +WDPYPFILLNLAFST Sbjct 22 KLDDDTVGAYAEKVARFFGTGTYLMWQTIFVAVWVVLNCGVFVWQWDPYPFILLNLAFST 81 Query 82 QASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTEYNARELAALRLAIGEVPTRDY 141 QA+YAAPLILLAQNRQE RDR EDRRRA +TKADTE+ RELA LRLA+G++ +RDY Sbjct 82 QAAYAAPLILLAQNRQEDRDRVSLNEDRRRAFETKADTEFITRELAGLRLAVGDMVSRDY 141 Query 142 LRHELDSLRALLAELQPTDPDVAQPRVA 169 LRHEL+ L +L L+ D A R+A Sbjct 142 LRHELEDLHNMLERLEAKLDDEAASRIA 169 >gi|300858213|ref|YP_003783196.1| hypothetical protein cpfrc_00795 [Corynebacterium pseudotuberculosis FRC41] gi|300685667|gb|ADK28589.1| hypothetical protein cpfrc_00795 [Corynebacterium pseudotuberculosis FRC41] gi|302205935|gb|ADL10277.1| Hypothetical protein CpC231_0795 [Corynebacterium pseudotuberculosis C231] gi|302330491|gb|ADL20685.1| Hypothetical protein Cp1002_0795 [Corynebacterium pseudotuberculosis 1002] gi|308276170|gb|ADO26069.1| Putative membrane protein [Corynebacterium pseudotuberculosis I19] gi|341824605|gb|AEK92126.1| Hypothetical protein CpPAT10_0793 [Corynebacterium pseudotuberculosis PAT10] Length=199 Score = 187 bits (474), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 91/148 (62%), Positives = 110/148 (75%), Gaps = 0/148 (0%) Query 22 RLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNLFAVGLRWDPYPFILLNLAFST 81 +LD + VG E +ARFFGTG YL+ QT+ V W+VLN +WDPYPFILLNLAFST Sbjct 22 KLDDDTVGAYAEKVARFFGTGTYLMWQTIFVALWVVLNCGVFVWQWDPYPFILLNLAFST 81 Query 82 QASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTEYNARELAALRLAIGEVPTRDY 141 QA+YAAPLILLAQNRQE RDR EDRRRA +TKADTE+ RELA LRLA+G++ +RDY Sbjct 82 QAAYAAPLILLAQNRQEDRDRVSLNEDRRRAFETKADTEFITRELAGLRLAVGDMVSRDY 141 Query 142 LRHELDSLRALLAELQPTDPDVAQPRVA 169 LRHEL+ L+ +L L+ D A R+A Sbjct 142 LRHELEDLQNMLERLEAKLDDEAASRIA 169 >gi|237785248|ref|YP_002905953.1| hypothetical protein ckrop_0647 [Corynebacterium kroppenstedtii DSM 44385] gi|237758160|gb|ACR17410.1| hypothetical protein ckrop_0647 [Corynebacterium kroppenstedtii DSM 44385] Length=195 Score = 186 bits (473), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 94/158 (60%), Positives = 115/158 (73%), Gaps = 1/158 (0%) Query 1 VSKPFAPRRLYTP-RTSRTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLN 59 ++ FA L TP R R +D +AVG E +ARF GTG+YL QT++V WI+LN Sbjct 1 MADSFARTDLDTPVRAKRRSLLSMDGDAVGVAAEKVARFLGTGKYLGWQTIIVTAWILLN 60 Query 60 LFAVGLRWDPYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADT 119 + + WDPYPFILLNLAFSTQA+YAAPLILLAQNRQ+ RDR EDRRRAAQTKADT Sbjct 61 IGGMWWNWDPYPFILLNLAFSTQAAYAAPLILLAQNRQDDRDRVTLNEDRRRAAQTKADT 120 Query 120 EYNARELAALRLAIGEVPTRDYLRHELDSLRALLAELQ 157 E+ ARELA +R+A+GE TRDYLRHEL+ L +L ++ Sbjct 121 EFLARELAGVRIALGETVTRDYLRHELEDLTTVLQRIE 158 >gi|38233593|ref|NP_939360.1| hypothetical protein DIP0998 [Corynebacterium diphtheriae NCTC 13129] gi|38199853|emb|CAE49516.1| Putative membrane protein [Corynebacterium diphtheriae] Length=198 Score = 186 bits (471), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 90/148 (61%), Positives = 110/148 (75%), Gaps = 0/148 (0%) Query 22 RLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNLFAVGLRWDPYPFILLNLAFST 81 +LD + +G E IARFFGTG YL+ QT+ V+ W+ LN +WDPYPFILLNLAFST Sbjct 23 KLDDDTIGAYAEKIARFFGTGTYLMWQTVFVVLWVALNCGVFVWQWDPYPFILLNLAFST 82 Query 82 QASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTEYNARELAALRLAIGEVPTRDY 141 QA+YAAPLILLAQNRQE RDR EDRRRA +TKADTE+ RELA LRLA+G++ +RDY Sbjct 83 QAAYAAPLILLAQNRQEDRDRVSLNEDRRRAFETKADTEFITRELAGLRLAVGDMVSRDY 142 Query 142 LRHELDSLRALLAELQPTDPDVAQPRVA 169 LRHEL+ L+ +L ++ D A RVA Sbjct 143 LRHELEDLQNMLDRIEAKLDDEAASRVA 170 >gi|324999684|ref|ZP_08120796.1| hypothetical protein PseP1_12990 [Pseudonocardia sp. P1] Length=185 Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 95/148 (65%), Positives = 114/148 (78%), Gaps = 3/148 (2%) Query 4 PFAP--RRLYTPRTSRTLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNLF 61 P AP RRL PR R +DP+ R +E IARF GTGR+L +Q+++V+ WI LNL Sbjct 2 PEAPVGRRLDQPRVGRRRFE-VDPDGFARLSERIARFLGTGRFLAIQSVIVVFWIALNLI 60 Query 62 AVGLRWDPYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTEY 121 A ++WDPYPFILLNLAFSTQA+YAAPLILLAQNRQ+ RDR +EDRRRA +TKADTE+ Sbjct 61 AWRIQWDPYPFILLNLAFSTQAAYAAPLILLAQNRQDDRDRIALDEDRRRAERTKADTEF 120 Query 122 NARELAALRLAIGEVPTRDYLRHELDSL 149 ARELAALRLA+GE +RDYLR EL+ L Sbjct 121 LARELAALRLAVGETASRDYLRGELEKL 148 >gi|340794818|ref|YP_004760281.1| hypothetical protein CVAR_1857 [Corynebacterium variabile DSM 44702] gi|340534728|gb|AEK37208.1| hypothetical protein CVAR_1857 [Corynebacterium variabile DSM 44702] Length=180 Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 93/158 (59%), Positives = 112/158 (71%), Gaps = 7/158 (4%) Query 23 LDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNLFAVGLRWDPYPFILLNLAFSTQ 82 D +A+G E +ARF GTG YLL QT+ V+ WI+LN+ + WDPYPFILLNLAFSTQ Sbjct 24 FDGDAIGVGAERVARFLGTGSYLLWQTVFVIIWILLNIGGMWWNWDPYPFILLNLAFSTQ 83 Query 83 ASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTEYNARELAALRLAIGEVPTRDYL 142 A+YAAPLILLAQNRQ+ RDR EDRRR A+TKADTE+ ARELA LR+A+GE TRDYL Sbjct 84 AAYAAPLILLAQNRQDDRDRVSLNEDRRRTAETKADTEFLARELAGLRIAVGENVTRDYL 143 Query 143 RHELDSLRALLAELQPTDPDVAQPRVADEAEQHAKKSG 180 RHELD L LL ++ D + R E + H + G Sbjct 144 RHELDDLTDLLHRIE----DKLEDR---EHDDHDSQDG 174 >gi|172040355|ref|YP_001800069.1| hypothetical protein cur_0675 [Corynebacterium urealyticum DSM 7109] gi|171851659|emb|CAQ04635.1| hypothetical protein cu0675 [Corynebacterium urealyticum DSM 7109] Length=188 Score = 182 bits (462), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 91/158 (58%), Positives = 111/158 (71%), Gaps = 0/158 (0%) Query 23 LDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNLFAVGLRWDPYPFILLNLAFSTQ 82 L+ +AVG E +ARF GTG+YL QTL+V+ WI LN+ + WDPYPFILLNLAFSTQ Sbjct 24 LNGDAVGAGAEKVARFLGTGKYLAWQTLIVVVWICLNIGGMWWNWDPYPFILLNLAFSTQ 83 Query 83 ASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTEYNARELAALRLAIGEVPTRDYL 142 A+YAAPLILLAQNRQ+ RDR EDRRRA +TKADTE+ ARELA +R+A+GE TRDYL Sbjct 84 AAYAAPLILLAQNRQDDRDRLALNEDRRRAEETKADTEFLARELAGVRIAVGETVTRDYL 143 Query 143 RHELDSLRALLAELQPTDPDVAQPRVADEAEQHAKKSG 180 R ELD L L+ ++ D A E A+ +G Sbjct 144 RRELDELSELMRRIEDKLEDRAHDEDEREMADGARSAG 181 >gi|334563607|ref|ZP_08516598.1| hypothetical protein CbovD2_03459 [Corynebacterium bovis DSM 20582] Length=188 Score = 180 bits (457), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 86/134 (65%), Positives = 104/134 (78%), Gaps = 0/134 (0%) Query 24 DPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVLNLFAVGLRWDPYPFILLNLAFSTQA 83 D + +G E IARF GTG+YL+ QT++V+ W+ LN+ + WDPYPFILLNLAFSTQA Sbjct 25 DADVIGVWAEKIARFLGTGQYLMWQTVIVIVWVALNVGGMAWNWDPYPFILLNLAFSTQA 84 Query 84 SYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTKADTEYNARELAALRLAIGEVPTRDYLR 143 +YAAPLILLAQNRQ+ RDR EDRRRAAQTKADTE+ ARELA +R+A+GE TRDYLR Sbjct 85 AYAAPLILLAQNRQDDRDRVALNEDRRRAAQTKADTEFLARELAGVRIAVGETVTRDYLR 144 Query 144 HELDSLRALLAELQ 157 ELD L LL ++ Sbjct 145 RELDELGDLLRRIE 158 >gi|256389353|ref|YP_003110917.1| hypothetical protein Caci_0121 [Catenulispora acidiphila DSM 44928] gi|256355579|gb|ACU69076.1| protein of unknown function DUF1003 [Catenulispora acidiphila DSM 44928] Length=167 Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 89/153 (59%), Positives = 113/153 (74%), Gaps = 4/153 (2%) Query 1 VSKPFAPRRLYTPRTSR--TLAPRLDPEAVGRTTESIARFFGTGRYLLVQTLLVLTWIVL 58 +++ + P RL PR R +L P DP+A GR +E+IARFFGT RYL +Q+L+V+ WI L Sbjct 1 MAREYIPPRLDQPRGRRQVSLKPSFDPDAFGRVSETIARFFGTARYLFIQSLIVVIWIAL 60 Query 59 NLFAV--GLRWDPYPFILLNLAFSTQASYAAPLILLAQNRQEKRDRAVFEEDRRRAAQTK 116 N+ V +RWDPYPFILLNLAFSTQA+YAAPLILLAQNRQ +RD+ ED+ R + Sbjct 61 NILVVTKAIRWDPYPFILLNLAFSTQAAYAAPLILLAQNRQAERDKVQIAEDKAREELSF 120 Query 117 ADTEYNARELAALRLAIGEVPTRDYLRHELDSL 149 A EY RE+A+LR+A+GEV TRDY+R EL SL Sbjct 121 ATMEYLTREIASLRMAVGEVATRDYVRGELQSL 153 Lambda K H 0.321 0.135 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 162000902400 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40