BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1233c
Length=198
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608373|ref|NP_215749.1| hypothetical protein Rv1233c [Mycob... 366 8e-100
gi|15840678|ref|NP_335715.1| hypothetical protein MT1271 [Mycoba... 366 1e-99
gi|31792426|ref|NP_854919.1| hypothetical protein Mb1265c [Mycob... 363 9e-99
gi|167967885|ref|ZP_02550162.1| hypothetical membrane protein [M... 189 3e-46
gi|323720292|gb|EGB29390.1| membrane protein [Mycobacterium tube... 175 4e-42
gi|183984180|ref|YP_001852471.1| proline and glycine rich transm... 128 5e-28
gi|342862112|ref|ZP_08718755.1| hypothetical protein MCOL_24596 ... 107 7e-22
gi|120405438|ref|YP_955267.1| hypothetical protein Mvan_4486 [My... 95.5 4e-18
gi|296170134|ref|ZP_06851732.1| integral membrane protein [Mycob... 92.8 3e-17
gi|254823046|ref|ZP_05228047.1| hypothetical protein MintA_24170... 87.0 2e-15
gi|118463393|ref|YP_880616.1| hypothetical protein MAV_1372 [Myc... 86.3 2e-15
gi|254774250|ref|ZP_05215766.1| hypothetical protein MaviaA2_062... 86.3 2e-15
gi|336458564|gb|EGO37531.1| hypothetical protein MAPs_11540 [Myc... 85.5 4e-15
gi|240173005|ref|ZP_04751663.1| proline and glycine rich transme... 78.6 4e-13
gi|126436574|ref|YP_001072265.1| hypothetical protein Mjls_3999 ... 77.8 8e-13
gi|108800949|ref|YP_641146.1| hypothetical protein Mmcs_3985 [My... 76.3 2e-12
gi|333989844|ref|YP_004522458.1| hypothetical protein JDM601_120... 66.6 2e-09
gi|118471769|ref|YP_889313.1| integral membrane protein [Mycobac... 65.5 5e-09
gi|159036330|ref|YP_001535583.1| hypothetical protein Sare_0670 ... 65.1 5e-09
gi|315443265|ref|YP_004076144.1| hypothetical protein Mspyr1_164... 62.4 4e-08
gi|145222798|ref|YP_001133476.1| hypothetical protein Mflv_2210 ... 60.5 1e-07
gi|271964439|ref|YP_003338635.1| hypothetical protein Sros_2937 ... 59.7 2e-07
gi|145593282|ref|YP_001157579.1| hypothetical protein Strop_0724... 58.5 5e-07
gi|331698250|ref|YP_004334489.1| hypothetical protein Psed_4481 ... 57.4 1e-06
gi|169628461|ref|YP_001702110.1| hypothetical protein MAB_1370c ... 56.6 2e-06
gi|269957486|ref|YP_003327275.1| hypothetical protein Xcel_2703 ... 55.5 5e-06
gi|169630861|ref|YP_001704510.1| hypothetical protein MAB_3781 [... 54.3 1e-05
gi|323360080|ref|YP_004226476.1| hypothetical protein MTES_3632 ... 53.9 1e-05
gi|226363516|ref|YP_002781298.1| hypothetical protein ROP_41060 ... 53.1 2e-05
gi|297202136|ref|ZP_06919533.1| conserved hypothetical protein [... 52.8 3e-05
gi|330465606|ref|YP_004403349.1| hypothetical protein VAB18032_0... 52.0 4e-05
gi|226303837|ref|YP_002763795.1| hypothetical protein RER_03480 ... 50.8 1e-04
gi|229819031|ref|YP_002880557.1| hypothetical protein Bcav_0532 ... 48.1 7e-04
gi|323357794|ref|YP_004224190.1| hypothetical protein MTES_1346 ... 47.8 8e-04
gi|311064800|ref|YP_003971525.1| hypothetical protein BBPR_1455 ... 47.4 0.001
gi|313140969|ref|ZP_07803162.1| predicted protein [Bifidobacteri... 45.8 0.004
gi|54022231|ref|YP_116473.1| hypothetical protein nfa2670 [Nocar... 43.5 0.018
gi|262201353|ref|YP_003272561.1| hypothetical protein Gbro_1385 ... 43.1 0.020
gi|147905055|ref|NP_001090508.1| phospholipid scramblase 2 [Xeno... 42.4 0.034
gi|297202692|ref|ZP_06920089.1| integral membrane protein [Strep... 38.9 0.47
gi|116791295|gb|ABK25925.1| unknown [Picea sitchensis] 38.1 0.79
gi|297156843|gb|ADI06555.1| integral membrane protein [Streptomy... 37.0 1.4
gi|296128410|ref|YP_003635660.1| hypothetical protein Cfla_0548 ... 34.7 7.5
gi|238062510|ref|ZP_04607219.1| hypothetical protein MCAG_03476 ... 34.3 9.8
>gi|15608373|ref|NP_215749.1| hypothetical protein Rv1233c [Mycobacterium tuberculosis H37Rv]
gi|148661020|ref|YP_001282543.1| hypothetical protein MRA_1242 [Mycobacterium tuberculosis H37Ra]
gi|148822449|ref|YP_001287203.1| hypothetical protein TBFG_11258 [Mycobacterium tuberculosis F11]
35 more sequence titles
Length=198
Score = 366 bits (940), Expect = 8e-100, Method: Compositional matrix adjust.
Identities = 198/198 (100%), Positives = 198/198 (100%), Gaps = 0/198 (0%)
Query 1 MTAPSGSSGESAHDAAGGPPPVGERPPEQPIADAPWAPPASSPMANHPPPAYPPSGYPPA 60
MTAPSGSSGESAHDAAGGPPPVGERPPEQPIADAPWAPPASSPMANHPPPAYPPSGYPPA
Sbjct 1 MTAPSGSSGESAHDAAGGPPPVGERPPEQPIADAPWAPPASSPMANHPPPAYPPSGYPPA 60
Query 61 YQPGYPTGYPPPMPPGGYAPPGYPPPGTSSAGYGDIPYPPMPPPYGGSPGGYYPEPGYLD 120
YQPGYPTGYPPPMPPGGYAPPGYPPPGTSSAGYGDIPYPPMPPPYGGSPGGYYPEPGYLD
Sbjct 61 YQPGYPTGYPPPMPPGGYAPPGYPPPGTSSAGYGDIPYPPMPPPYGGSPGGYYPEPGYLD 120
Query 121 GYGPSQPGMNTMALVSLISALVGVLCCIGSIVGIVFGAIAINQIKQTREEGYGLAVAGIV 180
GYGPSQPGMNTMALVSLISALVGVLCCIGSIVGIVFGAIAINQIKQTREEGYGLAVAGIV
Sbjct 121 GYGPSQPGMNTMALVSLISALVGVLCCIGSIVGIVFGAIAINQIKQTREEGYGLAVAGIV 180
Query 181 IGIATLLVYMIAGIFAIP 198
IGIATLLVYMIAGIFAIP
Sbjct 181 IGIATLLVYMIAGIFAIP 198
>gi|15840678|ref|NP_335715.1| hypothetical protein MT1271 [Mycobacterium tuberculosis CDC1551]
gi|253799722|ref|YP_003032723.1| hypothetical protein TBMG_02748 [Mycobacterium tuberculosis KZN
1435]
gi|254231495|ref|ZP_04924822.1| conserved hypothetical membrane protein [Mycobacterium tuberculosis
C]
8 more sequence titles
Length=201
Score = 366 bits (939), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 198/198 (100%), Positives = 198/198 (100%), Gaps = 0/198 (0%)
Query 1 MTAPSGSSGESAHDAAGGPPPVGERPPEQPIADAPWAPPASSPMANHPPPAYPPSGYPPA 60
MTAPSGSSGESAHDAAGGPPPVGERPPEQPIADAPWAPPASSPMANHPPPAYPPSGYPPA
Sbjct 4 MTAPSGSSGESAHDAAGGPPPVGERPPEQPIADAPWAPPASSPMANHPPPAYPPSGYPPA 63
Query 61 YQPGYPTGYPPPMPPGGYAPPGYPPPGTSSAGYGDIPYPPMPPPYGGSPGGYYPEPGYLD 120
YQPGYPTGYPPPMPPGGYAPPGYPPPGTSSAGYGDIPYPPMPPPYGGSPGGYYPEPGYLD
Sbjct 64 YQPGYPTGYPPPMPPGGYAPPGYPPPGTSSAGYGDIPYPPMPPPYGGSPGGYYPEPGYLD 123
Query 121 GYGPSQPGMNTMALVSLISALVGVLCCIGSIVGIVFGAIAINQIKQTREEGYGLAVAGIV 180
GYGPSQPGMNTMALVSLISALVGVLCCIGSIVGIVFGAIAINQIKQTREEGYGLAVAGIV
Sbjct 124 GYGPSQPGMNTMALVSLISALVGVLCCIGSIVGIVFGAIAINQIKQTREEGYGLAVAGIV 183
Query 181 IGIATLLVYMIAGIFAIP 198
IGIATLLVYMIAGIFAIP
Sbjct 184 IGIATLLVYMIAGIFAIP 201
>gi|31792426|ref|NP_854919.1| hypothetical protein Mb1265c [Mycobacterium bovis AF2122/97]
gi|121637162|ref|YP_977385.1| hypothetical protein BCG_1293c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224989637|ref|YP_002644324.1| hypothetical membrane protein [Mycobacterium bovis BCG str. Tokyo
172]
gi|31618015|emb|CAD94126.1| CONSERVED HYPOTHETICAL MEMBRANE PROTEIN [Mycobacterium bovis
AF2122/97]
gi|121492809|emb|CAL71280.1| Conserved hypothetical membrane protein [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|224772750|dbj|BAH25556.1| hypothetical membrane protein [Mycobacterium bovis BCG str. Tokyo
172]
gi|341601180|emb|CCC63853.1| conserved hypothetical membrane protein [Mycobacterium bovis
BCG str. Moreau RDJ]
Length=198
Score = 363 bits (931), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 196/198 (99%), Positives = 197/198 (99%), Gaps = 0/198 (0%)
Query 1 MTAPSGSSGESAHDAAGGPPPVGERPPEQPIADAPWAPPASSPMANHPPPAYPPSGYPPA 60
MTAPSGSSGESAHDAAGGPPPVGERPPEQPIADAPWAPPASSPMA+HPPPAYPPSGYPPA
Sbjct 1 MTAPSGSSGESAHDAAGGPPPVGERPPEQPIADAPWAPPASSPMADHPPPAYPPSGYPPA 60
Query 61 YQPGYPTGYPPPMPPGGYAPPGYPPPGTSSAGYGDIPYPPMPPPYGGSPGGYYPEPGYLD 120
YQPGYPT YPPPMPPGGYAPPGYPPPGTSSAGYGDIPYPPMPPPYGGSPGGYYPEPGYLD
Sbjct 61 YQPGYPTDYPPPMPPGGYAPPGYPPPGTSSAGYGDIPYPPMPPPYGGSPGGYYPEPGYLD 120
Query 121 GYGPSQPGMNTMALVSLISALVGVLCCIGSIVGIVFGAIAINQIKQTREEGYGLAVAGIV 180
GYGPSQPGMNTMALVSLISALVGVLCCIGSIVGIVFGAIAINQIKQTREEGYGLAVAGIV
Sbjct 121 GYGPSQPGMNTMALVSLISALVGVLCCIGSIVGIVFGAIAINQIKQTREEGYGLAVAGIV 180
Query 181 IGIATLLVYMIAGIFAIP 198
IGIATLLVYMIAGIFAIP
Sbjct 181 IGIATLLVYMIAGIFAIP 198
>gi|167967885|ref|ZP_02550162.1| hypothetical membrane protein [Mycobacterium tuberculosis H37Ra]
gi|254364133|ref|ZP_04980179.1| conserved hypothetical membrane protein [Mycobacterium tuberculosis
str. Haarlem]
gi|254550239|ref|ZP_05140686.1| hypothetical membrane protein [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|294994791|ref|ZP_06800482.1| hypothetical membrane protein [Mycobacterium tuberculosis 210]
gi|297633781|ref|ZP_06951561.1| hypothetical membrane protein [Mycobacterium tuberculosis KZN
4207]
gi|297730767|ref|ZP_06959885.1| hypothetical membrane protein [Mycobacterium tuberculosis KZN
R506]
gi|313658098|ref|ZP_07814978.1| hypothetical membrane protein [Mycobacterium tuberculosis KZN
V2475]
gi|134149647|gb|EBA41692.1| conserved hypothetical membrane protein [Mycobacterium tuberculosis
str. Haarlem]
Length=98
Score = 189 bits (479), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 98/98 (100%), Positives = 98/98 (100%), Gaps = 0/98 (0%)
Query 101 MPPPYGGSPGGYYPEPGYLDGYGPSQPGMNTMALVSLISALVGVLCCIGSIVGIVFGAIA 160
MPPPYGGSPGGYYPEPGYLDGYGPSQPGMNTMALVSLISALVGVLCCIGSIVGIVFGAIA
Sbjct 1 MPPPYGGSPGGYYPEPGYLDGYGPSQPGMNTMALVSLISALVGVLCCIGSIVGIVFGAIA 60
Query 161 INQIKQTREEGYGLAVAGIVIGIATLLVYMIAGIFAIP 198
INQIKQTREEGYGLAVAGIVIGIATLLVYMIAGIFAIP
Sbjct 61 INQIKQTREEGYGLAVAGIVIGIATLLVYMIAGIFAIP 98
>gi|323720292|gb|EGB29390.1| membrane protein [Mycobacterium tuberculosis CDC1551A]
Length=126
Score = 175 bits (443), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 111/111 (100%), Positives = 111/111 (100%), Gaps = 0/111 (0%)
Query 88 TSSAGYGDIPYPPMPPPYGGSPGGYYPEPGYLDGYGPSQPGMNTMALVSLISALVGVLCC 147
TSSAGYGDIPYPPMPPPYGGSPGGYYPEPGYLDGYGPSQPGMNTMALVSLISALVGVLCC
Sbjct 16 TSSAGYGDIPYPPMPPPYGGSPGGYYPEPGYLDGYGPSQPGMNTMALVSLISALVGVLCC 75
Query 148 IGSIVGIVFGAIAINQIKQTREEGYGLAVAGIVIGIATLLVYMIAGIFAIP 198
IGSIVGIVFGAIAINQIKQTREEGYGLAVAGIVIGIATLLVYMIAGIFAIP
Sbjct 76 IGSIVGIVFGAIAINQIKQTREEGYGLAVAGIVIGIATLLVYMIAGIFAIP 126
>gi|183984180|ref|YP_001852471.1| proline and glycine rich transmembrane protein [Mycobacterium
marinum M]
gi|183177506|gb|ACC42616.1| proline and glycine rich transmembrane protein [Mycobacterium
marinum M]
Length=222
Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 59/80 (74%), Positives = 72/80 (90%), Gaps = 0/80 (0%)
Query 119 LDGYGPSQPGMNTMALVSLISALVGVLCCIGSIVGIVFGAIAINQIKQTREEGYGLAVAG 178
+ GYGP+ PGMNTMA+V+L+S+LVGV CCIGS+V IV G IAINQIKQTRE+GYGLAVAG
Sbjct 141 MAGYGPALPGMNTMAIVALVSSLVGVFCCIGSVVAIVVGTIAINQIKQTREDGYGLAVAG 200
Query 179 IVIGIATLLVYMIAGIFAIP 198
IVI +ATLL+Y++ GIF+IP
Sbjct 201 IVIAVATLLIYLVVGIFSIP 220
>gi|342862112|ref|ZP_08718755.1| hypothetical protein MCOL_24596 [Mycobacterium colombiense CECT
3035]
gi|342130416|gb|EGT83731.1| hypothetical protein MCOL_24596 [Mycobacterium colombiense CECT
3035]
Length=199
Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 54/92 (59%), Positives = 72/92 (79%), Gaps = 3/92 (3%)
Query 109 PGGYYPEPGYLDGYGPS---QPGMNTMALVSLISALVGVLCCIGSIVGIVFGAIAINQIK 165
PGGYYP P Y GYGP+ + G N +A+ SLI+A G+LC IGSIV IV GAIA++QIK
Sbjct 105 PGGYYPPPDYRGGYGPAGTHRSGTNGLAIASLIAAFTGLLCGIGSIVAIVLGAIALDQIK 164
Query 166 QTREEGYGLAVAGIVIGIATLLVYMIAGIFAI 197
+TR++G+GLAVAGIV+GIATL+V ++ +F +
Sbjct 165 RTRQDGFGLAVAGIVVGIATLVVILVIVLFRL 196
>gi|120405438|ref|YP_955267.1| hypothetical protein Mvan_4486 [Mycobacterium vanbaalenii PYR-1]
gi|119958256|gb|ABM15261.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=218
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/87 (57%), Positives = 65/87 (75%), Gaps = 3/87 (3%)
Query 109 PGGYYPEPGYLDGYG-PSQPGMNTMALVSLISALVGVLCCIGSIVGIVFGAIAINQIKQT 167
P G YP+ GY GYG P+ G N++A+ SL+++ VG+ CCIGSI GI G IA++QIKQT
Sbjct 129 PAGGYPDAGY--GYGAPAPQGTNSLAIASLVASCVGLFCCIGSIAGIAMGVIALSQIKQT 186
Query 168 REEGYGLAVAGIVIGIATLLVYMIAGI 194
R EG GLAVAGI++G+ TLL+ IA +
Sbjct 187 RAEGQGLAVAGIIVGVITLLISGIATV 213
>gi|296170134|ref|ZP_06851732.1| integral membrane protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295895196|gb|EFG74910.1| integral membrane protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=77
Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/73 (64%), Positives = 60/73 (83%), Gaps = 1/73 (1%)
Query 126 QPGMNTMALVSLISALVGVLCC-IGSIVGIVFGAIAINQIKQTREEGYGLAVAGIVIGIA 184
+PG N +A+ SLIS+ GV CC +GSIV IV GA+A+NQIK+T+++GYGLAVAGIVIGIA
Sbjct 2 KPGTNKLAIASLISSFTGVFCCCLGSIVAIVLGAVAVNQIKRTQQDGYGLAVAGIVIGIA 61
Query 185 TLLVYMIAGIFAI 197
TL+V I +FA+
Sbjct 62 TLVVTTIVVLFAM 74
>gi|254823046|ref|ZP_05228047.1| hypothetical protein MintA_24170 [Mycobacterium intracellulare
ATCC 13950]
Length=192
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/59 (68%), Positives = 51/59 (87%), Gaps = 0/59 (0%)
Query 127 PGMNTMALVSLISALVGVLCCIGSIVGIVFGAIAINQIKQTREEGYGLAVAGIVIGIAT 185
PG N +A+ SLI++ G+LC +GSIV IV GAIA++QIK+TR+EG+GLAVAGIVIGIAT
Sbjct 119 PGTNALAIASLIASFTGLLCGLGSIVAIVLGAIALDQIKRTRQEGFGLAVAGIVIGIAT 177
>gi|118463393|ref|YP_880616.1| hypothetical protein MAV_1372 [Mycobacterium avium 104]
gi|118164680|gb|ABK65577.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=197
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/59 (67%), Positives = 51/59 (87%), Gaps = 0/59 (0%)
Query 126 QPGMNTMALVSLISALVGVLCCIGSIVGIVFGAIAINQIKQTREEGYGLAVAGIVIGIA 184
QPG N +A+ SLI++ G+LC IGS+V IV GAIA++QIK+TR++G+GLAVAGIVIGIA
Sbjct 123 QPGTNGLAIASLIASFTGLLCGIGSVVAIVLGAIALDQIKRTRQDGFGLAVAGIVIGIA 181
>gi|254774250|ref|ZP_05215766.1| hypothetical protein MaviaA2_06215 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=194
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/59 (67%), Positives = 51/59 (87%), Gaps = 0/59 (0%)
Query 126 QPGMNTMALVSLISALVGVLCCIGSIVGIVFGAIAINQIKQTREEGYGLAVAGIVIGIA 184
QPG N +A+ SLI++ G+LC IGS+V IV GAIA++QIK+TR++G+GLAVAGIVIGIA
Sbjct 120 QPGTNGLAIASLIASFTGLLCGIGSVVAIVLGAIALDQIKRTRQDGFGLAVAGIVIGIA 178
>gi|336458564|gb|EGO37531.1| hypothetical protein MAPs_11540 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=198
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/59 (67%), Positives = 51/59 (87%), Gaps = 0/59 (0%)
Query 126 QPGMNTMALVSLISALVGVLCCIGSIVGIVFGAIAINQIKQTREEGYGLAVAGIVIGIA 184
QPG N +A+ SLI++ G+LC IGS+V IV GAIA++QIK+TR++G+GLAVAGIVIGIA
Sbjct 124 QPGTNGLAIASLIASFTGLLCGIGSVVAIVLGAIALDQIKRTRQDGFGLAVAGIVIGIA 182
>gi|240173005|ref|ZP_04751663.1| proline and glycine rich transmembrane protein [Mycobacterium
kansasii ATCC 12478]
Length=60
Score = 78.6 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 33/51 (65%), Positives = 41/51 (81%), Gaps = 0/51 (0%)
Query 127 PGMNTMALVSLISALVGVLCCIGSIVGIVFGAIAINQIKQTREEGYGLAVA 177
PG NTMA+VSL+S+ GV CCIGSIV +V G I +NQIKQTR++G+GL A
Sbjct 2 PGTNTMAIVSLVSSFAGVFCCIGSIVSVVLGTITLNQIKQTRDDGHGLTTA 52
>gi|126436574|ref|YP_001072265.1| hypothetical protein Mjls_3999 [Mycobacterium sp. JLS]
gi|126236374|gb|ABN99774.1| hypothetical protein Mjls_3999 [Mycobacterium sp. JLS]
Length=179
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/71 (44%), Positives = 51/71 (72%), Gaps = 0/71 (0%)
Query 127 PGMNTMALVSLISALVGVLCCIGSIVGIVFGAIAINQIKQTREEGYGLAVAGIVIGIATL 186
P N +A+ SL+++L+G +CC+GS+ GI G +++NQIKQ +EEG GLA+AGI +G +L
Sbjct 107 PKTNALAIWSLVASLIGFVCCLGSVAGIALGLVSLNQIKQNQEEGQGLAIAGIAVGAVSL 166
Query 187 LVYMIAGIFAI 197
L ++ + +
Sbjct 167 LAGLVMAVVLM 177
>gi|108800949|ref|YP_641146.1| hypothetical protein Mmcs_3985 [Mycobacterium sp. MCS]
gi|119870089|ref|YP_940041.1| hypothetical protein Mkms_4059 [Mycobacterium sp. KMS]
gi|108771368|gb|ABG10090.1| conserved hypothetical protein [Mycobacterium sp. MCS]
gi|119696178|gb|ABL93251.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=185
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/65 (47%), Positives = 49/65 (76%), Gaps = 0/65 (0%)
Query 130 NTMALVSLISALVGVLCCIGSIVGIVFGAIAINQIKQTREEGYGLAVAGIVIGIATLLVY 189
N +A+ SL+++L+G +CC+GS+ GI G +++NQIKQ +EEG GLA+AGI +G +LL
Sbjct 116 NALAIWSLVASLIGFVCCLGSVAGIALGLVSLNQIKQNQEEGQGLAIAGIAVGAVSLLAG 175
Query 190 MIAGI 194
++ +
Sbjct 176 LVMAV 180
>gi|333989844|ref|YP_004522458.1| hypothetical protein JDM601_1204 [Mycobacterium sp. JDM601]
gi|333485812|gb|AEF35204.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=209
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/132 (40%), Positives = 70/132 (54%), Gaps = 26/132 (19%)
Query 67 TGYPPPMPPGGYAPPGYPPPGTSSAGYGDIPYPPMPPPYGGSPGGYYPEPGYLDGYGPSQ 126
G PP PPG APPGYP GYG PYP GGY+ P Q
Sbjct 102 VGTPPGYPPGYGAPPGYP-----QQGYG-TPYP----------GGYF---------NPGQ 136
Query 127 P-GMNTMALVSLISALVGVLCCIGSIVGIVFGAIAINQIKQTREEGYGLAVAGIVIGIAT 185
P N +A+ SL+ AL+G+L ++VG G IA+ QIK+T E G+G+AVAG +G A
Sbjct 137 PQKTNVLAICSLVVALLGLLFWPLAVVGATLGVIALGQIKRTGEAGHGMAVAGTAVGGAA 196
Query 186 LLVYMIAGIFAI 197
+++ I + A+
Sbjct 197 VVLSFILAMVAL 208
>gi|118471769|ref|YP_889313.1| integral membrane protein [Mycobacterium smegmatis str. MC2 155]
gi|118173056|gb|ABK73952.1| integral membrane protein [Mycobacterium smegmatis str. MC2 155]
Length=149
Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/150 (33%), Positives = 69/150 (46%), Gaps = 33/150 (22%)
Query 55 SGYPPAYQPGYPTGYPPPMPPGGYAPPGYPPPGTSSA-----GYGDIPYPPMPPPYGGSP 109
SG PPAYQPGYP P P P Y P G+ P+ P P
Sbjct 16 SGEPPAYQPGYPPAQPDPFAPVDYPYSPPPAAFPPPYPPPQPGFSYAPFDPYGRP----- 70
Query 110 GGYYPEPGYLDGYGPSQPGMNTMALVSLISALVGVLCCIGSIVGIVFGAIAINQIKQTRE 169
PG N +A+ SL+ +L G+LCC+ + G+V G + + + ++T +
Sbjct 71 -----------------PGTNGLAIASLVCSLAGMLCCLPGLAGLVLGILGMRETRRTGQ 113
Query 170 EGYGLAVAGIVI------GIATLLVYMIAG 193
+GYG+AVAG VI GIA V ++ G
Sbjct 114 DGYGIAVAGTVIGAFVTVGIALYFVLLLIG 143
>gi|159036330|ref|YP_001535583.1| hypothetical protein Sare_0670 [Salinispora arenicola CNS-205]
gi|157915165|gb|ABV96592.1| conserved hypothetical protein [Salinispora arenicola CNS-205]
Length=181
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/111 (39%), Positives = 63/111 (57%), Gaps = 10/111 (9%)
Query 94 GDIPYPPMPPPYGGSPGGYYPEPGYLDGY-GPSQPG-------MNTMALVSLISALVGVL 145
GD PYPP P YG P YP P GY P+ PG N++A+ +L+ +L GV+
Sbjct 55 GDAPYPPTGP-YGAVPPTAYPGPYATSGYPQPAYPGYGYPPRRTNSLAIAALVLSLAGVV 113
Query 146 CCIGSIVGIVFGAIAINQIKQTREEGYGLAVAGIVIG-IATLLVYMIAGIF 195
CI + VG + G +A QI++ E+G G+A AGI++G I T L + ++
Sbjct 114 TCITAPVGAILGHVARKQIRENGEDGEGMAKAGIIVGWILTGLTVLATALY 164
>gi|315443265|ref|YP_004076144.1| hypothetical protein Mspyr1_16420 [Mycobacterium sp. Spyr1]
gi|315261568|gb|ADT98309.1| hypothetical protein Mspyr1_16420 [Mycobacterium sp. Spyr1]
Length=230
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 86/223 (39%), Positives = 108/223 (49%), Gaps = 43/223 (19%)
Query 10 ESAHDAAGG--PPPVGERPPEQPIADAPWAPPASSPMANHPPPAYPP--------SGYPP 59
ES+ AA G P P G P I P AP SS + PP Y P S PP
Sbjct 12 ESSESAADGSEPTPAGYEAPS--IEHTPSAPDTSSD--DTPPHGYTPPPAYNPPPSSTPP 67
Query 60 AYQPGYPTGYPPP---------MPPGGYAPPGYPPPGTSSAGYGDIPYPPM-------PP 103
Y TGYP P PP GY YPPPG + GYG Y P P
Sbjct 68 MYGTPPNTGYPAPGDFTSPPYPPPPAGYGAQNYPPPGYGAQGYGAQGYGPQGYGAQSYPS 127
Query 104 PYGGSPGGYYPEPGYLDGYG-PSQPGMNTMALVSLISAL----VGVLCCIGSIVGI---V 155
PYG PGGY PG GYG P+Q G N MA+ SL+++L + + C G+I I V
Sbjct 128 PYGAYPGGY---PGADYGYGTPAQQGSNGMAIGSLVTSLLALPLNIACFSGTIASIVAVV 184
Query 156 FGAIAINQIKQTREEGYGLAVAGIVIGIATLL--VYMIAGIFA 196
G +A+NQIK + + G +A+AGI IG+ L+ ++A +FA
Sbjct 185 LGVVALNQIKTSGQSGKEMAIAGIAIGVLGLIGAFVLMAVVFA 227
>gi|145222798|ref|YP_001133476.1| hypothetical protein Mflv_2210 [Mycobacterium gilvum PYR-GCK]
gi|145215284|gb|ABP44688.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
Length=235
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/139 (40%), Positives = 75/139 (54%), Gaps = 17/139 (12%)
Query 69 YPPP-MPPGGYAPPGYPPPGTSSAGYGDIPYPPMPPPYGGSPGGYYPEPGYLDGYG-PSQ 126
YPPP GY GY P G + YG YP PYG PGGY PG GYG P+Q
Sbjct 100 YPPPGYGAQGYGAQGYGPQGYGAQSYGAQGYPS---PYGAYPGGY---PGADYGYGTPAQ 153
Query 127 PGMNTMALVSLISALV----GVLCCIGSIVGIVFGAIA---INQIKQTREEGYGLAVAGI 179
G N MA+ SL+++L+ + C G+I IV + +NQIK + + G +A+AGI
Sbjct 154 QGSNGMAIGSLVTSLLALPLNIACFSGTIASIVAVVLGVVALNQIKTSGQSGKEMAIAGI 213
Query 180 VIGIATLL--VYMIAGIFA 196
IG+ L+ ++A +FA
Sbjct 214 AIGVLGLIGAFVLMAVVFA 232
>gi|271964439|ref|YP_003338635.1| hypothetical protein Sros_2937 [Streptosporangium roseum DSM
43021]
gi|270507614|gb|ACZ85892.1| hypothetical protein Sros_2937 [Streptosporangium roseum DSM
43021]
Length=129
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/75 (47%), Positives = 50/75 (67%), Gaps = 4/75 (5%)
Query 127 PGMNTMALVSLISALVGVLCC-IGSIVGIVFGAIAINQIKQTREEGYGLAVAGIVI---G 182
G N MA+ +LI + G+ C I SIVGIV G I++ QIK+T EEG G+A+AG+V+ G
Sbjct 43 RGNNGMAIAALIMGIAGLFICGITSIVGIVLGHISLGQIKRTHEEGRGMAIAGLVLSYFG 102
Query 183 IATLLVYMIAGIFAI 197
+A LV ++ + AI
Sbjct 103 VACWLVVLVIWLVAI 117
>gi|145593282|ref|YP_001157579.1| hypothetical protein Strop_0724 [Salinispora tropica CNB-440]
gi|145302619|gb|ABP53201.1| hypothetical protein Strop_0724 [Salinispora tropica CNB-440]
Length=178
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/70 (45%), Positives = 45/70 (65%), Gaps = 1/70 (1%)
Query 113 YPEPGYLDGYGPSQPGMNTMALVSLISALVGVLCCIGSIVGIVFGAIAINQIKQTREEGY 172
YP+P YL GYG QP N +++ +L+ +LVG++ C+ + G G +A QI+ T E G
Sbjct 80 YPQPTYL-GYGYRQPETNGLSVAALVLSLVGIVSCVTAPAGAALGHVAQQQIRGTGERGN 138
Query 173 GLAVAGIVIG 182
GLA A I+IG
Sbjct 139 GLAKAAIIIG 148
>gi|331698250|ref|YP_004334489.1| hypothetical protein Psed_4481 [Pseudonocardia dioxanivorans
CB1190]
gi|326952939|gb|AEA26636.1| hypothetical protein Psed_4481 [Pseudonocardia dioxanivorans
CB1190]
Length=217
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/135 (38%), Positives = 69/135 (52%), Gaps = 27/135 (20%)
Query 54 PSGYPPAYQPGYPTGYPPPMPPGGYAPPGYPPPGTSS--AGYGDIPYPPMPPPYGGSPGG 111
P G P + QPGY P G+ P YPPPG + +GY YG P
Sbjct 84 PYGGPGSAQPGYGA------PQQGWDPNAYPPPGYAQQYSGYD------QQAAYGAYPA- 130
Query 112 YYPEPGYLDGYGPSQPGMNTMALVSLISALVGVLCCIGSIVGIVFGAIAINQIKQTREEG 171
Y +P Y P QP NTMA++SLI A V ++G+VFG +A +QI+ + E G
Sbjct 131 -YQQPAY-----PVQPPTNTMAILSLIFAFVF------PVLGLVFGFVAKSQIRSSGESG 178
Query 172 YGLAVAGIVIGIATL 186
GLA+AGI+I + +
Sbjct 179 DGLAMAGIIISVVFI 193
>gi|169628461|ref|YP_001702110.1| hypothetical protein MAB_1370c [Mycobacterium abscessus ATCC
19977]
gi|169240428|emb|CAM61456.1| Hypothetical protein MAB_1370c [Mycobacterium abscessus]
Length=221
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/72 (34%), Positives = 48/72 (67%), Gaps = 4/72 (5%)
Query 128 GMNTMALVSLISALVGVLCC----IGSIVGIVFGAIAINQIKQTREEGYGLAVAGIVIGI 183
G N +A+ SLI+++ ++ C I IVG++ G +A+NQ+K +++G G+A+AGI++G
Sbjct 138 GTNGLAIASLITSIAAIVTCYLGIILGIVGVILGVVALNQLKTRQQDGKGIAIAGIILGA 197
Query 184 ATLLVYMIAGIF 195
+++++ I
Sbjct 198 VIPVLWILVLIV 209
>gi|269957486|ref|YP_003327275.1| hypothetical protein Xcel_2703 [Xylanimonas cellulosilytica DSM
15894]
gi|269306167|gb|ACZ31717.1| hypothetical protein Xcel_2703 [Xylanimonas cellulosilytica DSM
15894]
Length=160
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/123 (36%), Positives = 67/123 (55%), Gaps = 14/123 (11%)
Query 66 PTGYPPPMPPGGYAPPG-----YPPPGTSSAGYGDIPYPPMPPPYGGSPGGYYP--EPGY 118
P G P P GG PP Y P + YGD P PYG P YP +PGY
Sbjct 5 PYGIRPSEPHGGPTPPSGQPSYYGEPTSGQQPYGD---PATHQPYGQHPQQPYPYAQPGY 61
Query 119 LDGYGPSQPGMNTMALVSLISALVGVLCC--IGSIVGIVFGAIAINQIKQTREEGYGLAV 176
GY P+ PG + +A+ +L+S ++G+ + S+V +V G +++ +I+Q+ +EG G+A+
Sbjct 62 --GYAPTGPGTDGLAIGALVSGILGLTVVPLLASVVALVLGIMSLGRIRQSGQEGRGMAI 119
Query 177 AGI 179
GI
Sbjct 120 TGI 122
>gi|169630861|ref|YP_001704510.1| hypothetical protein MAB_3781 [Mycobacterium abscessus ATCC 19977]
gi|169242828|emb|CAM63856.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=292
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/67 (47%), Positives = 44/67 (66%), Gaps = 7/67 (10%)
Query 125 SQPGMNTMALVSLISALVGVLCCIGSIVGIVFGAIAINQIKQTREEGYGLAVAGIVIGIA 184
S G N A+ SLI +V + C G I G+VFG I++NQIK+T + G G+A+AGIV+G
Sbjct 91 SARGTNGFAIASLILGIVPI--CAG-IFGVVFGFISLNQIKRTGQNGRGMAIAGIVLG-- 145
Query 185 TLLVYMI 191
++MI
Sbjct 146 --FIWMI 150
>gi|323360080|ref|YP_004226476.1| hypothetical protein MTES_3632 [Microbacterium testaceum StLB037]
gi|323276451|dbj|BAJ76596.1| hypothetical protein MTES_3632 [Microbacterium testaceum StLB037]
Length=268
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/124 (33%), Positives = 66/124 (54%), Gaps = 9/124 (7%)
Query 83 YPPPGTSSA-GYGDIPYPPM---PPPYGGSPGGYYPEPGY-LDGYGP--SQPGMNTMALV 135
YP P +A YG PY P YG + G GY GYG + N +A++
Sbjct 131 YPTPSADAAPAYGATPYGTQGYPAPAYGTAAYGAQGYSGYGTQGYGSYAAAARTNVLAII 190
Query 136 SLISALVG--VLCCIGSIVGIVFGAIAINQIKQTREEGYGLAVAGIVIGIATLLVYMIAG 193
SL+ ++ G +L G +VG++ G IA+ QIK++ E+G G+A+ G+++G + + +I
Sbjct 191 SLVGSIAGFFILPFAGPLVGVITGHIALGQIKRSGEKGRGMALTGVILGWVNIALAVIFI 250
Query 194 IFAI 197
F +
Sbjct 251 AFIV 254
>gi|226363516|ref|YP_002781298.1| hypothetical protein ROP_41060 [Rhodococcus opacus B4]
gi|226242005|dbj|BAH52353.1| hypothetical membrane protein [Rhodococcus opacus B4]
Length=204
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/75 (39%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query 124 PSQPGMNTMALVSLISALVG-VLCCIGSIVGIVFGAIAINQIKQTREEGYGL------AV 176
P G N +A+ SLI+++VG +GSIVGI+ G +A+ QIKQ+ +EG GL
Sbjct 123 PQSRGTNGLAIASLITSIVGGCFYGVGSIVGIILGIVALGQIKQSGQEGRGLAIAGIAIG 182
Query 177 AGIVIGIATLLVYMI 191
V+G V M+
Sbjct 183 GAYVVGWILFFVIML 197
>gi|297202136|ref|ZP_06919533.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
gi|197713573|gb|EDY57607.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
Length=424
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/110 (36%), Positives = 56/110 (51%), Gaps = 22/110 (20%)
Query 93 YGDIPYPPMP----------PPYGGSPGGYYPEPGYLDGYGPSQPGMNTMALVSLISALV 142
YG PY P P PPY GY P +P +N +A+ SL+ +
Sbjct 40 YGQQPYGPQPYEQPHGQPYGPPYQTWGQGYSPYA--------RRPSVNGLAIASLV---L 88
Query 143 GVLCCIGSIVGIVFGAIAINQIKQTREEGYGLAVAGIVIGIATLLVYMIA 192
GVLCC + VG+V G +A+ QIK+ + G GLAVAG ++ L +++ A
Sbjct 89 GVLCCFPA-VGLVLGVVALAQIKKKGQSGKGLAVAGSILSSLGLALWVTA 137
>gi|330465606|ref|YP_004403349.1| hypothetical protein VAB18032_08155 [Verrucosispora maris AB-18-032]
gi|328808577|gb|AEB42749.1| hypothetical protein VAB18032_08155 [Verrucosispora maris AB-18-032]
Length=172
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/75 (35%), Positives = 48/75 (64%), Gaps = 7/75 (9%)
Query 130 NTMALVSLISALVGVLCCIGSIVGIVFGAIAINQIKQTREEGYGLAVAGIVIG------- 182
N++A+V+L+ +L+G+ CI + +G + G +A+ QI++ E G G+A A I++G
Sbjct 92 NSLAIVALVLSLIGIGSCITAPIGAIMGHVAMRQIRERGEGGEGMAKAAIIVGWILTALL 151
Query 183 IATLLVYMIAGIFAI 197
+ + VY++ IFAI
Sbjct 152 VLAIAVYVVLIIFAI 166
>gi|226303837|ref|YP_002763795.1| hypothetical protein RER_03480 [Rhodococcus erythropolis PR4]
gi|226182952|dbj|BAH31056.1| hypothetical protein RER_03480 [Rhodococcus erythropolis PR4]
Length=217
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/212 (34%), Positives = 101/212 (48%), Gaps = 18/212 (8%)
Query 1 MTAPSGSSGESAHDAAGGP--------PPVGERPPEQPIADAPWAPPASSPMANHP---P 49
MT+ G++ +S+ D P PP G +P P ++P +P P
Sbjct 1 MTSSGGNNDDSSSDYQAKPGYGEFPSLPPEGYGVSPSETQSSPEVPGYTTPNEQYPGYPP 60
Query 50 PAYPPSGYPPAYQPGYPTGYPPP-MPPGGYAPPGYPPPGTSSAGYGDIPYPPMPPPYGGS 108
P+Y P+G P QPG G P P +PP + PP P P YG
Sbjct 61 PSYNPTGNTP--QPG-GIGEPNPYLPPQNFGPPNQYQPNQYQQPGQYGQSQYGQPQYGQP 117
Query 109 PGGYYPEPGYLDGYGP-SQP-GMNTMALVSLISALVG-VLCCIGSIVGIVFGAIAINQIK 165
P Y + GY P QP G N +A+ SL+ +L G +G I+GI+ G +A+NQIK
Sbjct 118 PNAYGQPNQFAGGYIPPMQPVGTNGLAIASLVVSLAGGCFYSLGGIIGIILGIVALNQIK 177
Query 166 QTREEGYGLAVAGIVIGIATLLVYMIAGIFAI 197
QT +EG GLA+AGI +G L ++ + + A+
Sbjct 178 QTGQEGRGLAIAGIAVGATFLAIFAVILVVAL 209
>gi|229819031|ref|YP_002880557.1| hypothetical protein Bcav_0532 [Beutenbergia cavernae DSM 12333]
gi|229564944|gb|ACQ78795.1| conserved hypothetical protein [Beutenbergia cavernae DSM 12333]
Length=162
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/57 (37%), Positives = 37/57 (65%), Gaps = 0/57 (0%)
Query 130 NTMALVSLISALVGVLCCIGSIVGIVFGAIAINQIKQTREEGYGLAVAGIVIGIATL 186
N A SL+ +++ +G ++FG +A++QIK+T++ G G+A+AG+VIG L
Sbjct 88 NGFATASLVCSILLCFGPLGGTAAVIFGHVALSQIKRTQQAGRGMAIAGLVIGYLQL 144
>gi|323357794|ref|YP_004224190.1| hypothetical protein MTES_1346 [Microbacterium testaceum StLB037]
gi|323274165|dbj|BAJ74310.1| hypothetical protein MTES_1346 [Microbacterium testaceum StLB037]
Length=414
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/66 (37%), Positives = 43/66 (66%), Gaps = 3/66 (4%)
Query 130 NTMALVSLISALVGVLCCIGSIVGIVFGAIAINQIKQTREEGYGLAVAGIVIGIATLLVY 189
N +VS+ + ++G + IG GI+ GA+ ++Q+K+T E+G GLA+AGI++G L+
Sbjct 205 NRTNVVSIFALVLGFVVPIG---GIIAGAVGLSQVKRTGEKGRGLAIAGIIVGSVMTLLS 261
Query 190 MIAGIF 195
++ I
Sbjct 262 IVGVIL 267
>gi|311064800|ref|YP_003971525.1| hypothetical protein BBPR_1455 [Bifidobacterium bifidum PRL2010]
gi|310867119|gb|ADP36488.1| Conserved hypothetical membrane spanning protein [Bifidobacterium
bifidum PRL2010]
Length=235
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/160 (37%), Positives = 70/160 (44%), Gaps = 32/160 (20%)
Query 33 DAPWAPPASSPMANHPP-------------PAYPPSGYPPAYQPGYPTGYPPPMPPGGYA 79
D WAP A + PP P Y +GY QPGY G P G Y
Sbjct 29 DGSWAPGAGAADGQVPPYGQGEYGQTGYGRPDYGQAGYSG--QPGY--GQPQHSQTGSYG 84
Query 80 PPGYPPPG-TSSAGYGDIPYPPMPPPYGGSPGGYYPEPGYLDGYGPSQPGMNTMALVSLI 138
PGY A YG YPP PP YG +P Y P Y Y P+ NTM++V +
Sbjct 85 APGYGAQQPQYGAPYGAAQYPPYPP-YGANP---YGVPAY---YAPNDR-WNTMSIVGFV 136
Query 139 SALVGVLCCIGSIVGIVFGAIAINQIKQTREEGYGLAVAG 178
L V C G I+ I IA+ QI +T+E G A+AG
Sbjct 137 --LSFVFCPAGLILSI----IALRQINRTQERGKAFAIAG 170
>gi|313140969|ref|ZP_07803162.1| predicted protein [Bifidobacterium bifidum NCIMB 41171]
gi|313133479|gb|EFR51096.1| predicted protein [Bifidobacterium bifidum NCIMB 41171]
Length=249
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/164 (35%), Positives = 70/164 (43%), Gaps = 32/164 (19%)
Query 29 QPIADAPWAPPASSPMANHPP-------------PAYPPSGYPPAYQPGYPTGYPPPMPP 75
+ D WAP A + PP P Y +GY QPGY G P
Sbjct 39 EQAGDGSWAPGAGAADGQVPPYGQGEYGQTGYGQPDYGQTGYSG--QPGY--GQPQHSQT 94
Query 76 GGYAPPGYPPPG-TSSAGYGDIPYPPMPPPYGGSPGGYYPEPGYLDGYGPSQPGMNTMAL 134
G Y PGY A YG YPP P YG +P Y P Y Y P+ NTM++
Sbjct 95 GSYGAPGYGAQQPQYGAPYGAAQYPPYPL-YGANP---YGVPAY---YAPNDR-WNTMSI 146
Query 135 VSLISALVGVLCCIGSIVGIVFGAIAINQIKQTREEGYGLAVAG 178
V + L V C G I+ I IA+ QI +T+E G A+AG
Sbjct 147 VGFV--LSFVFCPAGLILSI----IALRQINRTQERGKAFAIAG 184
>gi|54022231|ref|YP_116473.1| hypothetical protein nfa2670 [Nocardia farcinica IFM 10152]
gi|54013739|dbj|BAD55109.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=178
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/143 (31%), Positives = 61/143 (43%), Gaps = 51/143 (35%)
Query 63 PGYPT----GYPPPMPPGGYAPPGYPPPGTSSAGYGDIPYPPMPPPYGGSPGGYYPEPGY 118
P YP GYP GGY P G PP G
Sbjct 71 PSYPQQPGYGYP---QAGGYQPYGAPPSG------------------------------- 96
Query 119 LDGYGPSQPGMNTMALVSLISALVGVLCC---IGSIVGIVFGAIAINQIKQTRE-EGYGL 174
G+N MAL S+I ++ GV C + SIVG+V G +A+NQ+K + + G G+
Sbjct 97 ---------GLNGMALASMIVSIAGVASCCFIVPSIVGLVLGVVAMNQMKTSGDYNGKGM 147
Query 175 AVAGIVIGIATLLVYMIAGIFAI 197
A AGI +G A ++ ++ + I
Sbjct 148 AQAGIWVGAAGAVLGIVYWVLNI 170
>gi|262201353|ref|YP_003272561.1| hypothetical protein Gbro_1385 [Gordonia bronchialis DSM 43247]
gi|262084700|gb|ACY20668.1| hypothetical protein Gbro_1385 [Gordonia bronchialis DSM 43247]
Length=282
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/74 (34%), Positives = 47/74 (64%), Gaps = 3/74 (4%)
Query 127 PGMNTMALVSLISALVGVLCC-IGSIVGIVFGAIAINQIKQTR--EEGYGLAVAGIVIGI 183
P N +A+ SL ++ G++CC I S+VG++ G +A QI ++ + G GLA+AGI++G
Sbjct 195 PKTNPLAIASLACSIAGLVCCGIVSVVGLILGFVARKQISESNGTQTGDGLALAGIIVGA 254
Query 184 ATLLVYMIAGIFAI 197
+++++I +
Sbjct 255 VVVVLFIIYWVLVF 268
>gi|147905055|ref|NP_001090508.1| phospholipid scramblase 2 [Xenopus laevis]
gi|116487835|gb|AAI26055.1| Plscr2 protein [Xenopus laevis]
Length=354
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 45/89 (51%), Positives = 49/89 (56%), Gaps = 14/89 (15%)
Query 30 PIADAPWAPPASSPM----ANHPPPAYPPSGYPPA-YQP-GY-PTGYPPP-MPPGGYAPP 81
P AD P PP +P A +PP Y P+GYPPA YQP GY P GY P PP GY P
Sbjct 21 PGADYPGYPPPQNPYGYQPAGYPPAGYQPTGYPPAGYQPAGYPPAGYQPAGYPPAGYQPA 80
Query 82 GYPPPGTSSAGYGDIPYPPMPPPYGGSPG 110
GYPPPG G +P P PY G PG
Sbjct 81 GYPPPG------GQVPQGYPPGPYQGQPG 103
>gi|297202692|ref|ZP_06920089.1| integral membrane protein [Streptomyces sviceus ATCC 29083]
gi|197713269|gb|EDY57303.1| integral membrane protein [Streptomyces sviceus ATCC 29083]
Length=224
Score = 38.9 bits (89), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 57/198 (29%), Positives = 75/198 (38%), Gaps = 50/198 (25%)
Query 35 PWAPPASSPMANHPPP---AYPPSGYPPAYQPGYPT-GYPPPMPPGGYAPPGYPPPGTS- 89
PWAPP S P P PPS + A P G+PPP GY GYP P S
Sbjct 16 PWAPPESGPSLEKSPSPGAGQPPSVHDQATVTSVPNDGFPPPGAAPGY---GYPAPEQSG 72
Query 90 --------------------SAGYGDIPYPPMPPPYGGSPGGYYPEPGYLDGYGPSQPGM 129
GYG YP P Y GG+ P P Q GM
Sbjct 73 IPGGPASVPPPPIGPEGPGAPVGYGYPAYPQSPQGY----GGWAPPV-------PPQNGM 121
Query 130 NTMALV-----SLISALVGVLCCIGSIVGIVFGAIAINQIKQTREEGYGLAVAGIVIGI- 183
A+V + + G+L + ++ IVFG + ++ G A AG ++GI
Sbjct 122 GVAAMVLGILSCALFCMYGILSLVLGVLAIVFGIKGRKRAERGEATNRGQAQAGFIMGII 181
Query 184 -----ATLLVYMIAGIFA 196
++V +I GI A
Sbjct 182 GTILGVAVVVLLIIGITA 199
>gi|116791295|gb|ABK25925.1| unknown [Picea sitchensis]
Length=218
Score = 38.1 bits (87), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 32/57 (57%), Positives = 37/57 (65%), Gaps = 3/57 (5%)
Query 45 ANHPPPAYPPSGYPPAYQPGYPTGYPPP-MPPGGYAPPGYPPPGTSSAGYGDIPYPP 100
+ +PP YPPSGYPP+ P P+GYPP PP GY P GYPP G S+GY YPP
Sbjct 29 SGYPPSGYPPSGYPPSGYP--PSGYPPAGYPPSGYPPSGYPPSGYPSSGYPPSGYPP 83
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 29/51 (57%), Positives = 33/51 (65%), Gaps = 3/51 (5%)
Query 38 PPASSPMANHPPPAYPPSGYPPAYQPGYPTGYPPP-MPPGGYAPPGYPPPG 87
PP+ P + +PP YPPSGYPPA P P+GYPP PP GY GYPP G
Sbjct 32 PPSGYPPSGYPPSGYPPSGYPPAGYP--PSGYPPSGYPPSGYPSSGYPPSG 80
>gi|297156843|gb|ADI06555.1| integral membrane protein [Streptomyces bingchenggensis BCW-1]
Length=300
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 46/148 (32%), Positives = 65/148 (44%), Gaps = 12/148 (8%)
Query 56 GYPPAYQPGYPTGYPPPMPPGGYAPPGYPPPGTSSAGYGDIPYPPM---PPPYGGSPGGY 112
G P AYQP P P GY GY G GY Y PPYG P
Sbjct 113 GTPSAYQPPPGPYGAGPYAPTGYGQTGYGQTGYGQPGYAQPGYGQTGYGQPPYGAQPAYG 172
Query 113 YPEPGYLD-GYGPS----QPGMNTMALV-SLISALVGVLCCIGSIVG---IVFGAIAINQ 163
YP GY YGP G T ALV ++ ++ G I+G IVFG + ++
Sbjct 173 YPGSGYPGPAYGPVAFTPDNGNGTAALVLGIVGTVLFFSIVFGVILGVLAIVFGVLGRSK 232
Query 164 IKQTREEGYGLAVAGIVIGIATLLVYMI 191
++ + G A+AG+V+G+ ++ ++
Sbjct 233 AQRGEADNGGQALAGLVLGVIAVVASVV 260
>gi|296128410|ref|YP_003635660.1| hypothetical protein Cfla_0548 [Cellulomonas flavigena DSM 20109]
gi|296020225|gb|ADG73461.1| hypothetical protein Cfla_0548 [Cellulomonas flavigena DSM 20109]
Length=521
Score = 34.7 bits (78), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 34/99 (35%), Positives = 55/99 (56%), Gaps = 8/99 (8%)
Query 103 PPYGGSPGGYYPEPGYLD---GYGPSQPGMNTMALVSLISALVGVLCCIGS--IVGIVFG 157
PPYG P G P PG GY P P + +A+ SL+++ G+L G+ +GI G
Sbjct 221 PPYGAPPYGA-PAPGVSGQPYGYAPQVP-TDGLAVASLVTSGAGLLLMAGAPGPIGIGLG 278
Query 158 AIAINQIKQTREEGYGLAVAGIVIG-IATLLVYMIAGIF 195
A+ ++K+ G GLA+AGI +G + T+++ ++ F
Sbjct 279 IGALVRLKRNGRRGRGLAIAGIALGAVGTIVIGLLVWFF 317
>gi|238062510|ref|ZP_04607219.1| hypothetical protein MCAG_03476 [Micromonospora sp. ATCC 39149]
gi|237884321|gb|EEP73149.1| hypothetical protein MCAG_03476 [Micromonospora sp. ATCC 39149]
Length=171
Score = 34.3 bits (77), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/55 (35%), Positives = 29/55 (53%), Gaps = 9/55 (16%)
Query 147 CIGSIVGIVFGAIAINQIKQTREEGYGLAVAGIVIG---------IATLLVYMIA 192
CI + +G + G +A QI++T E G G+A A I++G + T V MI
Sbjct 105 CITAPIGAILGHVARKQIRETGEGGAGMAQAAIIVGWILTGLLVLLITFYVVMIV 159
Lambda K H
0.314 0.142 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 211830921192
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40