BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1234
Length=175
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608374|ref|NP_215750.1| hypothetical protein Rv1234 [Mycoba... 348 2e-94
gi|296170135|ref|ZP_06851733.1| conserved hypothetical protein [... 331 2e-89
gi|183984179|ref|YP_001852470.1| hypothetical protein MMAR_4207 ... 329 8e-89
gi|240173004|ref|ZP_04751662.1| hypothetical protein MkanA1_2706... 327 4e-88
gi|254823047|ref|ZP_05228048.1| hypothetical protein MintA_24175... 317 3e-85
gi|342862113|ref|ZP_08718756.1| hypothetical protein MCOL_24601 ... 317 4e-85
gi|41408647|ref|NP_961483.1| hypothetical protein MAP2549c [Myco... 300 6e-80
gi|108800948|ref|YP_641145.1| hypothetical protein Mmcs_3984 [My... 299 1e-79
gi|145222799|ref|YP_001133477.1| hypothetical protein Mflv_2211 ... 293 5e-78
gi|118465736|ref|YP_880617.1| hypothetical protein MAV_1373 [Myc... 291 2e-77
gi|333989845|ref|YP_004522459.1| hypothetical protein JDM601_120... 291 3e-77
gi|120405437|ref|YP_955266.1| hypothetical protein Mvan_4485 [My... 288 2e-76
gi|118467634|ref|YP_889312.1| hypothetical protein MSMEG_5062 [M... 288 2e-76
gi|169628462|ref|YP_001702111.1| hypothetical protein MAB_1371 [... 237 6e-61
gi|226307635|ref|YP_002767595.1| hypothetical protein RER_41480 ... 230 5e-59
gi|325676411|ref|ZP_08156089.1| hypothetical protein HMPREF0724_... 229 1e-58
gi|111022950|ref|YP_705922.1| hypothetical protein RHA1_ro05987 ... 228 3e-58
gi|296138923|ref|YP_003646166.1| hypothetical protein Tpau_1196 ... 227 4e-58
gi|226365456|ref|YP_002783239.1| hypothetical protein ROP_60470 ... 225 2e-57
gi|333920997|ref|YP_004494578.1| hypothetical protein AS9A_3337 ... 223 1e-56
gi|343928018|ref|ZP_08767483.1| hypothetical protein GOALK_100_0... 221 3e-56
gi|326382044|ref|ZP_08203737.1| hypothetical protein SCNU_03832 ... 215 2e-54
gi|134097640|ref|YP_001103301.1| transmembrane protein [Saccharo... 204 4e-51
gi|257054714|ref|YP_003132546.1| hypothetical protein Svir_06480... 204 5e-51
gi|262201806|ref|YP_003273014.1| hypothetical protein Gbro_1865 ... 201 3e-50
gi|54026688|ref|YP_120930.1| hypothetical protein nfa47150 [Noca... 200 8e-50
gi|256374953|ref|YP_003098613.1| hypothetical protein Amir_0806 ... 199 1e-49
gi|324999677|ref|ZP_08120789.1| transmembrane protein [Pseudonoc... 198 3e-49
gi|25027741|ref|NP_737795.1| hypothetical protein CE1185 [Coryne... 195 2e-48
gi|213964417|ref|ZP_03392617.1| conserved hypothetical protein [... 192 2e-47
gi|300783007|ref|YP_003763298.1| hypothetical protein AMED_1079 ... 191 4e-47
gi|300781483|ref|ZP_07091337.1| conserved hypothetical protein [... 190 7e-47
gi|319950430|ref|ZP_08024345.1| hypothetical protein ES5_12650 [... 189 2e-46
gi|257055005|ref|YP_003132837.1| hypothetical protein Svir_09530... 182 2e-44
gi|227487908|ref|ZP_03918224.1| conserved hypothetical protein [... 182 2e-44
gi|302524362|ref|ZP_07276704.1| transmembrane protein [Streptomy... 181 3e-44
gi|331694913|ref|YP_004331152.1| hypothetical protein Psed_1048 ... 181 5e-44
gi|227548416|ref|ZP_03978465.1| conserved hypothetical protein [... 179 1e-43
gi|145295269|ref|YP_001138090.1| hypothetical protein cgR_1210 [... 178 2e-43
gi|21323893|dbj|BAB98519.1| Hypothetical membrane protein [Coryn... 178 2e-43
gi|344045758|gb|EGV41428.1| hypothetical protein CgS9114_03548 [... 178 3e-43
gi|19552352|ref|NP_600354.1| hypothetical protein NCgl1081 [Cory... 178 3e-43
gi|237785250|ref|YP_002905955.1| hypothetical protein ckrop_0649... 177 8e-43
gi|284033274|ref|YP_003383205.1| hypothetical protein Kfla_5393 ... 167 6e-40
gi|38233595|ref|NP_939362.1| hypothetical protein DIP1000 [Coryn... 167 7e-40
gi|305682166|ref|ZP_07404970.1| conserved hypothetical protein [... 157 6e-37
gi|302525055|ref|ZP_07277397.1| transmembrane protein [Streptomy... 154 5e-36
gi|229821393|ref|YP_002882919.1| hypothetical protein Bcav_2912 ... 153 1e-35
gi|220913254|ref|YP_002488563.1| hypothetical protein Achl_2509 ... 151 3e-35
gi|325963999|ref|YP_004241905.1| hypothetical protein Asphe3_265... 150 5e-35
>gi|15608374|ref|NP_215750.1| hypothetical protein Rv1234 [Mycobacterium tuberculosis H37Rv]
gi|15840679|ref|NP_335716.1| hypothetical protein MT1272 [Mycobacterium tuberculosis CDC1551]
gi|31792427|ref|NP_854920.1| hypothetical protein Mb1266 [Mycobacterium bovis AF2122/97]
78 more sequence titles
Length=175
Score = 348 bits (892), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 175/175 (100%), Positives = 175/175 (100%), Gaps = 0/175 (0%)
Query 1 MTSPFQPRQVPGSTPAAAGAGRRGVPALPTPPKGWPVGSYPTYAEAQRAVDYLSEQQFPV 60
MTSPFQPRQVPGSTPAAAGAGRRGVPALPTPPKGWPVGSYPTYAEAQRAVDYLSEQQFPV
Sbjct 1 MTSPFQPRQVPGSTPAAAGAGRRGVPALPTPPKGWPVGSYPTYAEAQRAVDYLSEQQFPV 60
Query 61 QQVTIVGVDLMQVERVTGRLTWPKVLGGGVLSGAWLGLFIGLVLGFFSPNPWSALVTGLV 120
QQVTIVGVDLMQVERVTGRLTWPKVLGGGVLSGAWLGLFIGLVLGFFSPNPWSALVTGLV
Sbjct 61 QQVTIVGVDLMQVERVTGRLTWPKVLGGGVLSGAWLGLFIGLVLGFFSPNPWSALVTGLV 120
Query 121 AGVFFGLITSAVPYAMARGTRDFSSTMQLVAGRYDVLCDPQNAEKARDLLARLAI 175
AGVFFGLITSAVPYAMARGTRDFSSTMQLVAGRYDVLCDPQNAEKARDLLARLAI
Sbjct 121 AGVFFGLITSAVPYAMARGTRDFSSTMQLVAGRYDVLCDPQNAEKARDLLARLAI 175
>gi|296170135|ref|ZP_06851733.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295895197|gb|EFG74911.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=175
Score = 331 bits (849), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 165/175 (95%), Positives = 170/175 (98%), Gaps = 0/175 (0%)
Query 1 MTSPFQPRQVPGSTPAAAGAGRRGVPALPTPPKGWPVGSYPTYAEAQRAVDYLSEQQFPV 60
MTSPFQP QVPG+TP +A AGRRGVP+LPTPPKGWPVGSYPTYAEAQRAVDYLSEQQFPV
Sbjct 1 MTSPFQPGQVPGATPPSAAAGRRGVPSLPTPPKGWPVGSYPTYAEAQRAVDYLSEQQFPV 60
Query 61 QQVTIVGVDLMQVERVTGRLTWPKVLGGGVLSGAWLGLFIGLVLGFFSPNPWSALVTGLV 120
QQV IVGVDLMQVERVTGRL+WPKVLGGGVLSGAWLGLFIGLVLGFFSPNPW+AL TGLV
Sbjct 61 QQVIIVGVDLMQVERVTGRLSWPKVLGGGVLSGAWLGLFIGLVLGFFSPNPWAALATGLV 120
Query 121 AGVFFGLITSAVPYAMARGTRDFSSTMQLVAGRYDVLCDPQNAEKARDLLARLAI 175
AGVFFGLITSAVPYAMARGTRDFSSTMQLVAGRYDVLCDPQNAEKARDLLARLAI
Sbjct 121 AGVFFGLITSAVPYAMARGTRDFSSTMQLVAGRYDVLCDPQNAEKARDLLARLAI 175
>gi|183984179|ref|YP_001852470.1| hypothetical protein MMAR_4207 [Mycobacterium marinum M]
gi|183177505|gb|ACC42615.1| conserved hypothetical membrane protein [Mycobacterium marinum
M]
Length=175
Score = 329 bits (844), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 166/175 (95%), Positives = 166/175 (95%), Gaps = 0/175 (0%)
Query 1 MTSPFQPRQVPGSTPAAAGAGRRGVPALPTPPKGWPVGSYPTYAEAQRAVDYLSEQQFPV 60
MTSPFQP QVPGST A AGRRGVP LPTPPKGWPVGSYPTYAEAQRAVDYLSEQ FPV
Sbjct 1 MTSPFQPGQVPGSTSPAGAAGRRGVPGLPTPPKGWPVGSYPTYAEAQRAVDYLSEQDFPV 60
Query 61 QQVTIVGVDLMQVERVTGRLTWPKVLGGGVLSGAWLGLFIGLVLGFFSPNPWSALVTGLV 120
QVTIVGVDLMQVERVTGRLTWPKVLGGGVLSGAWLGLFIGLVLGFFSPNPW ALVTGLV
Sbjct 61 HQVTIVGVDLMQVERVTGRLTWPKVLGGGVLSGAWLGLFIGLVLGFFSPNPWGALVTGLV 120
Query 121 AGVFFGLITSAVPYAMARGTRDFSSTMQLVAGRYDVLCDPQNAEKARDLLARLAI 175
AGVFFGLITSAVPYAMARGTRDFSSTMQLVAGRYDVLCDPQNAEKARDLLARLAI
Sbjct 121 AGVFFGLITSAVPYAMARGTRDFSSTMQLVAGRYDVLCDPQNAEKARDLLARLAI 175
>gi|240173004|ref|ZP_04751662.1| hypothetical protein MkanA1_27066 [Mycobacterium kansasii ATCC
12478]
Length=175
Score = 327 bits (838), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 165/175 (95%), Positives = 168/175 (96%), Gaps = 0/175 (0%)
Query 1 MTSPFQPRQVPGSTPAAAGAGRRGVPALPTPPKGWPVGSYPTYAEAQRAVDYLSEQQFPV 60
MTSPFQP QVPG+TP AGRR VP LPTPPKGWPVGSYPTYAEAQRAVDYLSEQ+FPV
Sbjct 1 MTSPFQPGQVPGATPPTGPAGRRVVPGLPTPPKGWPVGSYPTYAEAQRAVDYLSEQEFPV 60
Query 61 QQVTIVGVDLMQVERVTGRLTWPKVLGGGVLSGAWLGLFIGLVLGFFSPNPWSALVTGLV 120
QQVTIVGVDLMQVERVTGRLTWPKVLGGGVLSGAWLGLFIGLVLGFFSPNPW+ALVTGLV
Sbjct 61 QQVTIVGVDLMQVERVTGRLTWPKVLGGGVLSGAWLGLFIGLVLGFFSPNPWAALVTGLV 120
Query 121 AGVFFGLITSAVPYAMARGTRDFSSTMQLVAGRYDVLCDPQNAEKARDLLARLAI 175
AGVFFGLITSAVPYAMARGTRDFSSTMQLVAGRYDVLCDPQNAEKARDLLARLAI
Sbjct 121 AGVFFGLITSAVPYAMARGTRDFSSTMQLVAGRYDVLCDPQNAEKARDLLARLAI 175
>gi|254823047|ref|ZP_05228048.1| hypothetical protein MintA_24175 [Mycobacterium intracellulare
ATCC 13950]
Length=175
Score = 317 bits (813), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 158/175 (91%), Positives = 164/175 (94%), Gaps = 0/175 (0%)
Query 1 MTSPFQPRQVPGSTPAAAGAGRRGVPALPTPPKGWPVGSYPTYAEAQRAVDYLSEQQFPV 60
MT+P+QP Q PG+TP A RG P LPTPP+GWPVGSYPTYAEAQRAVDYLSEQQFPV
Sbjct 1 MTNPYQPGQFPGATPGNATGRGRGAPGLPTPPRGWPVGSYPTYAEAQRAVDYLSEQQFPV 60
Query 61 QQVTIVGVDLMQVERVTGRLTWPKVLGGGVLSGAWLGLFIGLVLGFFSPNPWSALVTGLV 120
QQVTIVGVDLMQVERVTGRLTWPKVLGGGVLSGAWLGLFIGLVLGFFSPNPW AL+TGLV
Sbjct 61 QQVTIVGVDLMQVERVTGRLTWPKVLGGGVLSGAWLGLFIGLVLGFFSPNPWGALITGLV 120
Query 121 AGVFFGLITSAVPYAMARGTRDFSSTMQLVAGRYDVLCDPQNAEKARDLLARLAI 175
AGVFFGLITSAVPY+MARGTRDFSSTMQLVAGRYDVLCDPQNAEKARDLLARLAI
Sbjct 121 AGVFFGLITSAVPYSMARGTRDFSSTMQLVAGRYDVLCDPQNAEKARDLLARLAI 175
>gi|342862113|ref|ZP_08718756.1| hypothetical protein MCOL_24601 [Mycobacterium colombiense CECT
3035]
gi|342130417|gb|EGT83732.1| hypothetical protein MCOL_24601 [Mycobacterium colombiense CECT
3035]
Length=173
Score = 317 bits (813), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 163/175 (94%), Positives = 167/175 (96%), Gaps = 2/175 (1%)
Query 1 MTSPFQPRQVPGSTPAAAGAGRRGVPALPTPPKGWPVGSYPTYAEAQRAVDYLSEQQFPV 60
MT+PFQP QVPGSTP A AGRRG P LPTPP+GWPVGSYPTYAEAQRAVDYLS+QQFPV
Sbjct 1 MTNPFQPGQVPGSTPPGA-AGRRG-PGLPTPPRGWPVGSYPTYAEAQRAVDYLSDQQFPV 58
Query 61 QQVTIVGVDLMQVERVTGRLTWPKVLGGGVLSGAWLGLFIGLVLGFFSPNPWSALVTGLV 120
QQVTIVGVDLMQVERVTGRLTWPKVLGGGVLSGAWLGLFIGLVLGFFSPNPW AL TGLV
Sbjct 59 QQVTIVGVDLMQVERVTGRLTWPKVLGGGVLSGAWLGLFIGLVLGFFSPNPWGALATGLV 118
Query 121 AGVFFGLITSAVPYAMARGTRDFSSTMQLVAGRYDVLCDPQNAEKARDLLARLAI 175
AGVFFGLITSAVPY+MARGTRDFSSTMQLVAGRYDVLCDPQNAEKARDLLARLAI
Sbjct 119 AGVFFGLITSAVPYSMARGTRDFSSTMQLVAGRYDVLCDPQNAEKARDLLARLAI 173
>gi|41408647|ref|NP_961483.1| hypothetical protein MAP2549c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41397005|gb|AAS04866.1| hypothetical protein MAP_2549c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336458565|gb|EGO37532.1| hypothetical protein MAPs_11550 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=174
Score = 300 bits (767), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 160/175 (92%), Positives = 164/175 (94%), Gaps = 1/175 (0%)
Query 1 MTSPFQPRQVPGSTPAAAGAGRRGVPALPTPPKGWPVGSYPTYAEAQRAVDYLSEQQFPV 60
MTSPFQP QVPG+ GRRGVP LPTPP+GWPVGSYPTYAEAQRAVDYLS+QQFPV
Sbjct 1 MTSPFQPGQVPGAP-PPGAGGRRGVPGLPTPPRGWPVGSYPTYAEAQRAVDYLSDQQFPV 59
Query 61 QQVTIVGVDLMQVERVTGRLTWPKVLGGGVLSGAWLGLFIGLVLGFFSPNPWSALVTGLV 120
QQVTIVGVDLMQVERVTGRLTWPKVLGGGVLSGAWLGLFIGLVLGFFSPNPW AL TGLV
Sbjct 60 QQVTIVGVDLMQVERVTGRLTWPKVLGGGVLSGAWLGLFIGLVLGFFSPNPWGALATGLV 119
Query 121 AGVFFGLITSAVPYAMARGTRDFSSTMQLVAGRYDVLCDPQNAEKARDLLARLAI 175
AGVFFGLITSAVPY+MARGTRDFSSTMQLVAGRYDVLCDPQNAEKARDLLARLAI
Sbjct 120 AGVFFGLITSAVPYSMARGTRDFSSTMQLVAGRYDVLCDPQNAEKARDLLARLAI 174
>gi|108800948|ref|YP_641145.1| hypothetical protein Mmcs_3984 [Mycobacterium sp. MCS]
gi|119870088|ref|YP_940040.1| hypothetical protein Mkms_4058 [Mycobacterium sp. KMS]
gi|126436573|ref|YP_001072264.1| hypothetical protein Mjls_3998 [Mycobacterium sp. JLS]
gi|108771367|gb|ABG10089.1| conserved hypothetical protein [Mycobacterium sp. MCS]
gi|119696177|gb|ABL93250.1| conserved hypothetical protein [Mycobacterium sp. KMS]
gi|126236373|gb|ABN99773.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=175
Score = 299 bits (765), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 150/176 (86%), Positives = 163/176 (93%), Gaps = 2/176 (1%)
Query 1 MTSPFQPRQVPGSTPAAAGAGRRGVPA-LPTPPKGWPVGSYPTYAEAQRAVDYLSEQQFP 59
MTSPFQ PG+ P + AG RGVPA LPTPPKGWP+GSY TYAEAQRAVD+LS+QQFP
Sbjct 1 MTSPFQSGPTPGAPPNSP-AGARGVPAALPTPPKGWPIGSYSTYAEAQRAVDHLSDQQFP 59
Query 60 VQQVTIVGVDLMQVERVTGRLTWPKVLGGGVLSGAWLGLFIGLVLGFFSPNPWSALVTGL 119
VQQVTIVGVDLMQVERVTGRL+WPKVLGGGVL+GAWLGLFIGL+LGFFSPNPWSAL+TGL
Sbjct 60 VQQVTIVGVDLMQVERVTGRLSWPKVLGGGVLTGAWLGLFIGLILGFFSPNPWSALLTGL 119
Query 120 VAGVFFGLITSAVPYAMARGTRDFSSTMQLVAGRYDVLCDPQNAEKARDLLARLAI 175
+AGVFFGLITSA+PYAMARGTRDFSSTMQLVAGRYDVLCDP+NAE+ RDLLARL I
Sbjct 120 IAGVFFGLITSAIPYAMARGTRDFSSTMQLVAGRYDVLCDPKNAEQGRDLLARLTI 175
>gi|145222799|ref|YP_001133477.1| hypothetical protein Mflv_2211 [Mycobacterium gilvum PYR-GCK]
gi|315443266|ref|YP_004076145.1| hypothetical protein Mspyr1_16430 [Mycobacterium sp. Spyr1]
gi|145215285|gb|ABP44689.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
gi|315261569|gb|ADT98310.1| hypothetical protein Mspyr1_16430 [Mycobacterium sp. Spyr1]
Length=175
Score = 293 bits (751), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 150/175 (86%), Positives = 160/175 (92%), Gaps = 0/175 (0%)
Query 1 MTSPFQPRQVPGSTPAAAGAGRRGVPALPTPPKGWPVGSYPTYAEAQRAVDYLSEQQFPV 60
MTSPFQP Q P S A AGR PALPTPPKGWP+GSY TYAEAQRAVDYLS+Q+FPV
Sbjct 1 MTSPFQPGQNPASPAAGPAAGRGRQPALPTPPKGWPIGSYSTYAEAQRAVDYLSDQEFPV 60
Query 61 QQVTIVGVDLMQVERVTGRLTWPKVLGGGVLSGAWLGLFIGLVLGFFSPNPWSALVTGLV 120
QQVTIVGVDLMQVERVTGRL+WPKVLGGGVL+GAWLGLFIGL+LGFFSPNPWSAL+TG++
Sbjct 61 QQVTIVGVDLMQVERVTGRLSWPKVLGGGVLTGAWLGLFIGLILGFFSPNPWSALITGVI 120
Query 121 AGVFFGLITSAVPYAMARGTRDFSSTMQLVAGRYDVLCDPQNAEKARDLLARLAI 175
AGVFFGLITSA+PYAMARGTRDFSSTMQLVAGRYDVLCDP NAEK RDLLARL I
Sbjct 121 AGVFFGLITSAIPYAMARGTRDFSSTMQLVAGRYDVLCDPPNAEKGRDLLARLTI 175
>gi|118465736|ref|YP_880617.1| hypothetical protein MAV_1373 [Mycobacterium avium 104]
gi|254774251|ref|ZP_05215767.1| hypothetical protein MaviaA2_06220 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|118167023|gb|ABK67920.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=151
Score = 291 bits (746), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 144/151 (96%), Positives = 148/151 (99%), Gaps = 0/151 (0%)
Query 25 VPALPTPPKGWPVGSYPTYAEAQRAVDYLSEQQFPVQQVTIVGVDLMQVERVTGRLTWPK 84
+P LPTPP+GWPVGSYPTYAEAQRAVDYLS+QQFPVQQVTIVGVDLMQVERVTGRLTWPK
Sbjct 1 MPGLPTPPRGWPVGSYPTYAEAQRAVDYLSDQQFPVQQVTIVGVDLMQVERVTGRLTWPK 60
Query 85 VLGGGVLSGAWLGLFIGLVLGFFSPNPWSALVTGLVAGVFFGLITSAVPYAMARGTRDFS 144
VLGGGVLSGAWLGLFIGLVLGFFSPNPW AL TGLVAGVFFGLITSAVPY+MARGTRDFS
Sbjct 61 VLGGGVLSGAWLGLFIGLVLGFFSPNPWGALATGLVAGVFFGLITSAVPYSMARGTRDFS 120
Query 145 STMQLVAGRYDVLCDPQNAEKARDLLARLAI 175
STMQLVAGRYDVLCDPQNAEKARDLLARLAI
Sbjct 121 STMQLVAGRYDVLCDPQNAEKARDLLARLAI 151
>gi|333989845|ref|YP_004522459.1| hypothetical protein JDM601_1205 [Mycobacterium sp. JDM601]
gi|333485813|gb|AEF35205.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=174
Score = 291 bits (744), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 147/175 (84%), Positives = 157/175 (90%), Gaps = 1/175 (0%)
Query 1 MTSPFQPRQVPGSTPAAAGAGRRGVPALPTPPKGWPVGSYPTYAEAQRAVDYLSEQQFPV 60
MTSPFQ Q P AAA AGRR V LPTPPKGWP+G+YPTYAEAQRAVDYLS+QQFPV
Sbjct 1 MTSPFQSGQAPDPLGAAA-AGRRDVARLPTPPKGWPIGAYPTYAEAQRAVDYLSDQQFPV 59
Query 61 QQVTIVGVDLMQVERVTGRLTWPKVLGGGVLSGAWLGLFIGLVLGFFSPNPWSALVTGLV 120
QVTIVGVDLMQVERVTGRLTWPKVLGGGVL+GAWLGLFIGLVLG FS NP ALVTGL+
Sbjct 60 HQVTIVGVDLMQVERVTGRLTWPKVLGGGVLTGAWLGLFIGLVLGIFSDNPAQALVTGLI 119
Query 121 AGVFFGLITSAVPYAMARGTRDFSSTMQLVAGRYDVLCDPQNAEKARDLLARLAI 175
AGVFFGLITS+VPYAMARGTRDFSSTMQLVAGRYDVLCDPQ+AE+ RDLLA+L +
Sbjct 120 AGVFFGLITSSVPYAMARGTRDFSSTMQLVAGRYDVLCDPQSAEQGRDLLAKLTL 174
>gi|120405437|ref|YP_955266.1| hypothetical protein Mvan_4485 [Mycobacterium vanbaalenii PYR-1]
gi|119958255|gb|ABM15260.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=186
Score = 288 bits (738), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 147/175 (84%), Positives = 157/175 (90%), Gaps = 0/175 (0%)
Query 1 MTSPFQPRQVPGSTPAAAGAGRRGVPALPTPPKGWPVGSYPTYAEAQRAVDYLSEQQFPV 60
MTSPFQP Q P + AGR LPTPPKGWP+GSYPTYAEAQRAVD+LS+QQFPV
Sbjct 12 MTSPFQPGQNPAAAAGGPAAGRGRPVGLPTPPKGWPIGSYPTYAEAQRAVDHLSDQQFPV 71
Query 61 QQVTIVGVDLMQVERVTGRLTWPKVLGGGVLSGAWLGLFIGLVLGFFSPNPWSALVTGLV 120
+ VTIVGVDLMQVERVTGRLTWPKVLGGGVL+GAWLGLFIGLVLGFFSPNPWSAL+TGLV
Sbjct 72 EHVTIVGVDLMQVERVTGRLTWPKVLGGGVLTGAWLGLFIGLVLGFFSPNPWSALITGLV 131
Query 121 AGVFFGLITSAVPYAMARGTRDFSSTMQLVAGRYDVLCDPQNAEKARDLLARLAI 175
AGVFFGLITSA+PYAMARGTRDFSSTMQLVAGRYDVLCDP +AE+ RDLLARL I
Sbjct 132 AGVFFGLITSAIPYAMARGTRDFSSTMQLVAGRYDVLCDPGSAERGRDLLARLTI 186
>gi|118467634|ref|YP_889312.1| hypothetical protein MSMEG_5062 [Mycobacterium smegmatis str.
MC2 155]
gi|118168921|gb|ABK69817.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=152
Score = 288 bits (737), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 139/149 (94%), Positives = 147/149 (99%), Gaps = 0/149 (0%)
Query 27 ALPTPPKGWPVGSYPTYAEAQRAVDYLSEQQFPVQQVTIVGVDLMQVERVTGRLTWPKVL 86
ALPTPP+GWP+GSYPTYAEAQRAVDYLS+QQFPVQQVTIVGVDLMQVERVTGRLTWPKVL
Sbjct 4 ALPTPPRGWPIGSYPTYAEAQRAVDYLSDQQFPVQQVTIVGVDLMQVERVTGRLTWPKVL 63
Query 87 GGGVLSGAWLGLFIGLVLGFFSPNPWSALVTGLVAGVFFGLITSAVPYAMARGTRDFSST 146
GGGVLSGAWLGLFIGL+LGFFSPNPWSAL+TGL+AGVFFGLITSA+PYAMARGTRDFSST
Sbjct 64 GGGVLSGAWLGLFIGLILGFFSPNPWSALLTGLIAGVFFGLITSAIPYAMARGTRDFSST 123
Query 147 MQLVAGRYDVLCDPQNAEKARDLLARLAI 175
MQLVAGRYDVLCDPQNAE+ RDLLARL I
Sbjct 124 MQLVAGRYDVLCDPQNAEQGRDLLARLTI 152
>gi|169628462|ref|YP_001702111.1| hypothetical protein MAB_1371 [Mycobacterium abscessus ATCC 19977]
gi|169240429|emb|CAM61457.1| Conserved hypothetical transmembrane protein [Mycobacterium abscessus]
Length=173
Score = 237 bits (604), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 113/143 (80%), Positives = 129/143 (91%), Gaps = 0/143 (0%)
Query 33 KGWPVGSYPTYAEAQRAVDYLSEQQFPVQQVTIVGVDLMQVERVTGRLTWPKVLGGGVLS 92
+GWP+GSYPTYAEAQRAVDYLS++QFPV+ VTIVGV+LMQVERVTGRL+WPKVLGGG+LS
Sbjct 31 QGWPIGSYPTYAEAQRAVDYLSDEQFPVENVTIVGVNLMQVERVTGRLSWPKVLGGGMLS 90
Query 93 GAWLGLFIGLVLGFFSPNPWSALVTGLVAGVFFGLITSAVPYAMARGTRDFSSTMQLVAG 152
GAWLGLFIGLVLG FS N +LV GL G+ FGL+T+AVPYAM RGTRDF+STMQLVAG
Sbjct 91 GAWLGLFIGLVLGMFSTNLAGSLVVGLTVGLVFGLVTAAVPYAMTRGTRDFASTMQLVAG 150
Query 153 RYDVLCDPQNAEKARDLLARLAI 175
RYDVLC+P AE ARD+LA+LAI
Sbjct 151 RYDVLCEPAQAEAARDMLAKLAI 173
>gi|226307635|ref|YP_002767595.1| hypothetical protein RER_41480 [Rhodococcus erythropolis PR4]
gi|229493731|ref|ZP_04387513.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|226186752|dbj|BAH34856.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
gi|229319331|gb|EEN85170.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=164
Score = 230 bits (587), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 110/159 (70%), Positives = 133/159 (84%), Gaps = 2/159 (1%)
Query 17 AAGAGRRGVPALPTPPKGWPVGSYPTYAEAQRAVDYLSEQQFPVQQVTIVGVDLMQVERV 76
++ RRG ALPTPP GWP+GSYPTYAEAQRAVDYLS+Q+FPVQ VTIVGV+LMQVERV
Sbjct 8 SSNGSRRG--ALPTPPSGWPIGSYPTYAEAQRAVDYLSDQEFPVQDVTIVGVNLMQVERV 65
Query 77 TGRLTWPKVLGGGVLSGAWLGLFIGLVLGFFSPNPWSALVTGLVAGVFFGLITSAVPYAM 136
GRLTW KV+GGG++SGAWLG+F GLVLG + + L+ G+V G+ FG+I++ +PYA
Sbjct 66 LGRLTWAKVIGGGIVSGAWLGVFFGLVLGIVTGGFLAPLIAGIVGGIIFGVISTTIPYAA 125
Query 137 ARGTRDFSSTMQLVAGRYDVLCDPQNAEKARDLLARLAI 175
RG RDF+STMQLVAGRYDVLC+P+ AE ARDLLA+LAI
Sbjct 126 TRGQRDFASTMQLVAGRYDVLCEPKTAESARDLLAKLAI 164
>gi|325676411|ref|ZP_08156089.1| hypothetical protein HMPREF0724_13872 [Rhodococcus equi ATCC
33707]
gi|325552589|gb|EGD22273.1| hypothetical protein HMPREF0724_13872 [Rhodococcus equi ATCC
33707]
Length=162
Score = 229 bits (584), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 108/148 (73%), Positives = 127/148 (86%), Gaps = 0/148 (0%)
Query 28 LPTPPKGWPVGSYPTYAEAQRAVDYLSEQQFPVQQVTIVGVDLMQVERVTGRLTWPKVLG 87
LPTPP GWP+GSYPTYAEAQRAVDYLS+QQF V+ VTIVGVDLMQVERV GRLTW KV+G
Sbjct 15 LPTPPTGWPIGSYPTYAEAQRAVDYLSDQQFSVEDVTIVGVDLMQVERVLGRLTWAKVIG 74
Query 88 GGVLSGAWLGLFIGLVLGFFSPNPWSALVTGLVAGVFFGLITSAVPYAMARGTRDFSSTM 147
GG++SGAWLG+F GL+LG F+ L+ G+ G+ FGLI++ +PYA ARGTRDFSSTM
Sbjct 75 GGIVSGAWLGVFFGLLLGIFTGGFLGPLLVGIFGGIVFGLISTTIPYAAARGTRDFSSTM 134
Query 148 QLVAGRYDVLCDPQNAEKARDLLARLAI 175
QLVAGRYDVLCDP+ AE ARD+LA+LA+
Sbjct 135 QLVAGRYDVLCDPKTAESARDMLAKLAL 162
>gi|111022950|ref|YP_705922.1| hypothetical protein RHA1_ro05987 [Rhodococcus jostii RHA1]
gi|110822480|gb|ABG97764.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=163
Score = 228 bits (580), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 108/154 (71%), Positives = 132/154 (86%), Gaps = 2/154 (1%)
Query 22 RRGVPALPTPPKGWPVGSYPTYAEAQRAVDYLSEQQFPVQQVTIVGVDLMQVERVTGRLT 81
RRG ALP PP GWP+GSYPTYAEAQRAVDYLS+Q+F V+ VTIVGV+LMQVERV GRLT
Sbjct 12 RRG--ALPEPPTGWPIGSYPTYAEAQRAVDYLSDQEFSVEDVTIVGVNLMQVERVLGRLT 69
Query 82 WPKVLGGGVLSGAWLGLFIGLVLGFFSPNPWSALVTGLVAGVFFGLITSAVPYAMARGTR 141
W KV+GGG++SGAWLG+F GL+LG + + LV G+V G+ FGLI++ +PYA RGTR
Sbjct 70 WAKVIGGGIVSGAWLGVFFGLLLGIVTGGFLAPLVVGIVGGIIFGLISTTIPYAATRGTR 129
Query 142 DFSSTMQLVAGRYDVLCDPQNAEKARDLLARLAI 175
DF+STMQLVAGRYDVLC+P++AEKARD+LA+LA+
Sbjct 130 DFASTMQLVAGRYDVLCEPKSAEKARDMLAKLAL 163
>gi|296138923|ref|YP_003646166.1| hypothetical protein Tpau_1196 [Tsukamurella paurometabola DSM
20162]
gi|296027057|gb|ADG77827.1| conserved hypothetical protein [Tsukamurella paurometabola DSM
20162]
Length=170
Score = 227 bits (579), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 110/155 (71%), Positives = 128/155 (83%), Gaps = 4/155 (2%)
Query 21 GRRGVPALPTPPKGWPVGSYPTYAEAQRAVDYLSEQQFPVQQVTIVGVDLMQVERVTGRL 80
GRR LPT P GWP+GSY TYAEAQRAVDYLS+Q+FPVQ VTIVGVDLMQVER+TGRL
Sbjct 19 GRR----LPTKPNGWPIGSYTTYAEAQRAVDYLSDQEFPVQNVTIVGVDLMQVERITGRL 74
Query 81 TWPKVLGGGVLSGAWLGLFIGLVLGFFSPNPWSALVTGLVAGVFFGLITSAVPYAMARGT 140
TW +VLG G SGAWLGLF GL++G + ++ G++ GV FGLI++AVPYA +RGT
Sbjct 75 TWGRVLGAGAGSGAWLGLFFGLLVGLVMGQLATTVIAGVIGGVVFGLISTAVPYAASRGT 134
Query 141 RDFSSTMQLVAGRYDVLCDPQNAEKARDLLARLAI 175
RDFSSTMQLVAGRYDVLCDP +AE+ARD+LARL I
Sbjct 135 RDFSSTMQLVAGRYDVLCDPHHAEQARDMLARLNI 169
>gi|226365456|ref|YP_002783239.1| hypothetical protein ROP_60470 [Rhodococcus opacus B4]
gi|226243946|dbj|BAH54294.1| hypothetical membrane protein [Rhodococcus opacus B4]
Length=163
Score = 225 bits (574), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 107/154 (70%), Positives = 131/154 (86%), Gaps = 2/154 (1%)
Query 22 RRGVPALPTPPKGWPVGSYPTYAEAQRAVDYLSEQQFPVQQVTIVGVDLMQVERVTGRLT 81
RRG ALP PP GWP+GSYPTYAEAQRAVDYLS+Q+F V+ VTIVGV+LMQVERV GRLT
Sbjct 12 RRG--ALPEPPTGWPIGSYPTYAEAQRAVDYLSDQEFSVEDVTIVGVNLMQVERVLGRLT 69
Query 82 WPKVLGGGVLSGAWLGLFIGLVLGFFSPNPWSALVTGLVAGVFFGLITSAVPYAMARGTR 141
W KV+GGG++SGAWLG+F GL+LG + + LV G+V G+ FGLI++ +PYA RGTR
Sbjct 70 WAKVIGGGIVSGAWLGVFFGLLLGIVTGGFLAPLVVGIVGGIIFGLISTTIPYAATRGTR 129
Query 142 DFSSTMQLVAGRYDVLCDPQNAEKARDLLARLAI 175
DF+STMQLVAGRYDVLC+P++AE ARD+LA+LA+
Sbjct 130 DFASTMQLVAGRYDVLCEPKSAETARDMLAKLAL 163
>gi|333920997|ref|YP_004494578.1| hypothetical protein AS9A_3337 [Amycolicicoccus subflavus DQS3-9A1]
gi|333483219|gb|AEF41779.1| hypothetical protein AS9A_3337 [Amycolicicoccus subflavus DQS3-9A1]
Length=162
Score = 223 bits (567), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 106/147 (73%), Positives = 124/147 (85%), Gaps = 0/147 (0%)
Query 28 LPTPPKGWPVGSYPTYAEAQRAVDYLSEQQFPVQQVTIVGVDLMQVERVTGRLTWPKVLG 87
LPTPP GWP+G+YPTYAEAQRAVDYLS+QQFPVQ VTIVGVDLMQVERVTGRL WP+V+G
Sbjct 13 LPTPPTGWPIGAYPTYAEAQRAVDYLSDQQFPVQDVTIVGVDLMQVERVTGRLNWPRVIG 72
Query 88 GGVLSGAWLGLFIGLVLGFFSPNPWSALVTGLVAGVFFGLITSAVPYAMARGTRDFSSTM 147
G V++GAW+G+FIGL++G F+ LVTG+ GV F ++ AV YA +RG RDF STM
Sbjct 73 GAVVTGAWIGVFIGLLIGIFTGQLLEPLVTGIFFGVLFWVVMQAVQYAASRGQRDFQSTM 132
Query 148 QLVAGRYDVLCDPQNAEKARDLLARLA 174
QLVAGRYDVLC+P NAE+ RDLLARLA
Sbjct 133 QLVAGRYDVLCNPANAERGRDLLARLA 159
>gi|343928018|ref|ZP_08767483.1| hypothetical protein GOALK_100_00220 [Gordonia alkanivorans NBRC
16433]
gi|343762026|dbj|GAA14409.1| hypothetical protein GOALK_100_00220 [Gordonia alkanivorans NBRC
16433]
Length=162
Score = 221 bits (564), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 104/154 (68%), Positives = 128/154 (84%), Gaps = 1/154 (0%)
Query 23 RGVPALPTPPKGWPVGSYPTYAEAQRAVDYLSEQQFPVQQVTIVGVDLMQVERVTGRLTW 82
R P LPTPPKGWP+GSY TYAEAQRAVDYLS++ F VQ VTIVGVDLMQVERV GRLTW
Sbjct 9 RETPGLPTPPKGWPIGSYSTYAEAQRAVDYLSDENFTVQDVTIVGVDLMQVERVIGRLTW 68
Query 83 PKVLGGGVLSGAWLGLFIGLVLGF-FSPNPWSALVTGLVAGVFFGLITSAVPYAMARGTR 141
KV+GGG++SGAWLG F G ++ F+ +P + ++ G+V G+ FG+I++ +PYA RG R
Sbjct 69 GKVIGGGLVSGAWLGFFFGCLVALVFTGSPLAPIIAGIVGGMVFGVISATIPYAATRGQR 128
Query 142 DFSSTMQLVAGRYDVLCDPQNAEKARDLLARLAI 175
DF+STMQLVAGRYDVLCDP++AEKARD+LARL +
Sbjct 129 DFASTMQLVAGRYDVLCDPKSAEKARDMLARLTM 162
>gi|326382044|ref|ZP_08203737.1| hypothetical protein SCNU_03832 [Gordonia neofelifaecis NRRL
B-59395]
gi|326199470|gb|EGD56651.1| hypothetical protein SCNU_03832 [Gordonia neofelifaecis NRRL
B-59395]
Length=154
Score = 215 bits (548), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 101/153 (67%), Positives = 126/153 (83%), Gaps = 0/153 (0%)
Query 23 RGVPALPTPPKGWPVGSYPTYAEAQRAVDYLSEQQFPVQQVTIVGVDLMQVERVTGRLTW 82
R +P LPTPPKGWPVGSY TYA+AQRAVDYLS+ +F V +TIVGVDLMQVE+V GRLTW
Sbjct 2 RPMPGLPTPPKGWPVGSYDTYAQAQRAVDYLSDNEFQVDNLTIVGVDLMQVEKVLGRLTW 61
Query 83 PKVLGGGVLSGAWLGLFIGLVLGFFSPNPWSALVTGLVAGVFFGLITSAVPYAMARGTRD 142
KV+ GG+ SGAWLGLF G ++ W+ ++ G++AG+ FGLI++A+PYA RG RD
Sbjct 62 GKVVAGGIGSGAWLGLFFGALVSLVVGTSWTPILFGVIAGMVFGLISAAIPYAATRGQRD 121
Query 143 FSSTMQLVAGRYDVLCDPQNAEKARDLLARLAI 175
F+STMQLVAGRYDVLCDP+ AE+ARD+LA+LA+
Sbjct 122 FTSTMQLVAGRYDVLCDPRTAEQARDMLAKLAL 154
>gi|134097640|ref|YP_001103301.1| transmembrane protein [Saccharopolyspora erythraea NRRL 2338]
gi|291008816|ref|ZP_06566789.1| transmembrane protein [Saccharopolyspora erythraea NRRL 2338]
gi|133910263|emb|CAM00376.1| probable transmembrane protein [Saccharopolyspora erythraea NRRL
2338]
Length=173
Score = 204 bits (519), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 105/161 (66%), Positives = 126/161 (79%), Gaps = 4/161 (2%)
Query 19 GAGRR--GVPALPTPPKGWPVGSYPTYAEAQRAVDYLSEQQFPVQQVTIVGVDLMQVERV 76
G GR+ G P+LPTPP GWP+GSY TY EAQRAVD+L+E FPVQ+VTIVGVDLM VERV
Sbjct 7 GPGRQSAGTPSLPTPPTGWPIGSYGTYEEAQRAVDHLAESDFPVQEVTIVGVDLMLVERV 66
Query 77 TGRLTWPKVLGGGVLSGAWLGLFIGLVLGFFSPN-PW-SALVTGLVAGVFFGLITSAVPY 134
TGRL+W +VLGGG SGAW GLF+GL+LG F+P W ++ GL GV FGL+ +AV Y
Sbjct 67 TGRLSWGRVLGGGAASGAWFGLFVGLILGMFTPQGSWLGPVLVGLGTGVVFGLVFAAVGY 126
Query 135 AMARGTRDFSSTMQLVAGRYDVLCDPQNAEKARDLLARLAI 175
A RG RDFSS QLVAGRYDVL P++AE+ R+LLA+LA+
Sbjct 127 ASTRGRRDFSSASQLVAGRYDVLAQPKHAEEGRNLLAKLAM 167
>gi|257054714|ref|YP_003132546.1| hypothetical protein Svir_06480 [Saccharomonospora viridis DSM
43017]
gi|256584586|gb|ACU95719.1| hypothetical protein Svir_06480 [Saccharomonospora viridis DSM
43017]
Length=172
Score = 204 bits (518), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 103/163 (64%), Positives = 122/163 (75%), Gaps = 2/163 (1%)
Query 15 PAAAGAGRRGVPALPTPPKGWPVGSYPTYAEAQRAVDYLSEQQFPVQQVTIVGVDLMQVE 74
P ++G G+P LPTPP GWP+GSY TY EAQRAVDYL++ +F VQ VTIVGVDLM VE
Sbjct 6 PFSSGRQAAGLPRLPTPPSGWPIGSYATYEEAQRAVDYLADNEFQVQDVTIVGVDLMLVE 65
Query 75 RVTGRLTWPKVLGGGVLSGAWLGLFIGLVLGFFS--PNPWSALVTGLVAGVFFGLITSAV 132
RV G+L+W +VLG G LSGAW G F+G++L S WS ++ GLVAGV FG +A+
Sbjct 66 RVIGKLSWGRVLGTGALSGAWFGFFVGVLLIMVSRPEEMWSPVLLGLVAGVVFGAAFAAM 125
Query 133 PYAMARGTRDFSSTMQLVAGRYDVLCDPQNAEKARDLLARLAI 175
YA RG RDFSS QLVAGRYDVLC P+NAEK RDLLARLA+
Sbjct 126 SYAFTRGRRDFSSASQLVAGRYDVLCRPRNAEKGRDLLARLAM 168
>gi|262201806|ref|YP_003273014.1| hypothetical protein Gbro_1865 [Gordonia bronchialis DSM 43247]
gi|262085153|gb|ACY21121.1| hypothetical protein Gbro_1865 [Gordonia bronchialis DSM 43247]
Length=162
Score = 201 bits (512), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 108/175 (62%), Positives = 133/175 (76%), Gaps = 15/175 (8%)
Query 1 MTSPFQPRQVPGSTPAAAGAGRRGVPALPTPPKGWPVGSYPTYAEAQRAVDYLSEQQFPV 60
MT+P +P Q P LPTPPKGWP+GSY TY +AQRAVDYLS+Q F V
Sbjct 1 MTNPMRPGQ--------------QTPGLPTPPKGWPIGSYSTYEQAQRAVDYLSDQDFTV 46
Query 61 QQVTIVGVDLMQVERVTGRLTWPKVLGGGVLSGAWLGLFIGLVLGF-FSPNPWSALVTGL 119
Q VTIVGVDLMQVERV G+LTW KV+GGGV+SGAWLG F GL++ F+ NP + ++ G
Sbjct 47 QDVTIVGVDLMQVERVIGKLTWGKVIGGGVVSGAWLGFFFGLLVSLVFTGNPLAPILIGT 106
Query 120 VAGVFFGLITSAVPYAMARGTRDFSSTMQLVAGRYDVLCDPQNAEKARDLLARLA 174
+ G+ FG+I++ +PYA RG RDF+STMQLVAGRYDVLCDP++AEKARD+LARL+
Sbjct 107 IGGIIFGVISTTIPYAATRGQRDFASTMQLVAGRYDVLCDPKSAEKARDMLARLS 161
>gi|54026688|ref|YP_120930.1| hypothetical protein nfa47150 [Nocardia farcinica IFM 10152]
gi|54018196|dbj|BAD59566.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=164
Score = 200 bits (508), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 107/149 (72%), Positives = 126/149 (85%), Gaps = 1/149 (0%)
Query 28 LPTPPKGWPVGSYPTYAEAQRAVDYLSEQQFPVQQVTIVGVDLMQVERVTGRLTWPKVLG 87
LPTPP GWPVGSYPTYAEAQRAVDYL++ QFPVQ VTIVGVDLMQVERV RLTW KV+G
Sbjct 16 LPTPPSGWPVGSYPTYAEAQRAVDYLADNQFPVQDVTIVGVDLMQVERVLYRLTWAKVIG 75
Query 88 GGVLSGAWLGLFIGLVLGFFSP-NPWSALVTGLVAGVFFGLITSAVPYAMARGTRDFSST 146
GGV+SGAWLGLF+GL+L F+ L GLV G+ FG+I++++PYA RG RDF+S+
Sbjct 76 GGVVSGAWLGLFLGLLLSLFTTGGALGPLAVGLVGGIIFGVISTSIPYAATRGQRDFASS 135
Query 147 MQLVAGRYDVLCDPQNAEKARDLLARLAI 175
MQLVAGRYDVLC+P+ AE+ARD+LARLAI
Sbjct 136 MQLVAGRYDVLCNPKTAEQARDMLARLAI 164
>gi|256374953|ref|YP_003098613.1| hypothetical protein Amir_0806 [Actinosynnema mirum DSM 43827]
gi|255919256|gb|ACU34767.1| hypothetical protein Amir_0806 [Actinosynnema mirum DSM 43827]
Length=179
Score = 199 bits (506), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 101/167 (61%), Positives = 127/167 (77%), Gaps = 4/167 (2%)
Query 13 STPAAAGAGRRGVP-ALPTPPKGWPVGSYPTYAEAQRAVDYLSEQQFPVQQVTIVGVDLM 71
S+ + G R G+P LPTPP GWP+GSY TY EAQRAVD+L++ FPVQ+VTIVGVDLM
Sbjct 3 SSFSGQGQNRPGMPPRLPTPPSGWPIGSYATYEEAQRAVDFLADDDFPVQEVTIVGVDLM 62
Query 72 QVERVTGRLTWPKVLGGGVLSGAWLGLFIGLVLGFFSPN--PWSA-LVTGLVAGVFFGLI 128
VERVTG+LTW +VLG G SGAW G+F+G++L FSP W+ ++ G+V GV FG+I
Sbjct 63 MVERVTGKLTWGRVLGTGAASGAWFGVFVGVLLSLFSPTTGAWAGPILVGVVTGVAFGMI 122
Query 129 TSAVPYAMARGTRDFSSTMQLVAGRYDVLCDPQNAEKARDLLARLAI 175
+AV Y +RG RDF S QLVAGRYDVLC P++AE+ RDLLA+LA+
Sbjct 123 FAAVGYGSSRGRRDFQSASQLVAGRYDVLCQPRSAERGRDLLAKLAM 169
>gi|324999677|ref|ZP_08120789.1| transmembrane protein [Pseudonocardia sp. P1]
Length=173
Score = 198 bits (503), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 102/178 (58%), Positives = 128/178 (72%), Gaps = 15/178 (8%)
Query 1 MTSPF--QPRQVPGSTPAAAGAGRRGVPALPTPPKGWPVGSYPTYAEAQRAVDYLSEQQF 58
MT+PF Q R PG +P LPTPP GWPVGSY TY EAQRAVD+L++ F
Sbjct 1 MTNPFGGQARPAPG------------LPQLPTPPTGWPVGSYATYEEAQRAVDHLADSDF 48
Query 59 PVQQVTIVGVDLMQVERVTGRLTWPKVLGGGVLSGAWLGLFIGLVLGFFSPN-PWSALVT 117
PV+ VTIVGVDLM VERV GRLTW +VL G SGAW GLF+GL+L FSP+ + +V
Sbjct 49 PVRDVTIVGVDLMLVERVIGRLTWGRVLASGAASGAWFGLFVGLLLSLFSPDGSFLPIVV 108
Query 118 GLVAGVFFGLITSAVPYAMARGTRDFSSTMQLVAGRYDVLCDPQNAEKARDLLARLAI 175
GLV+G FG+ +A Y ++G RDF S+ Q+VAGRYDVLC+P+NAE+AR++LA+LA+
Sbjct 109 GLVSGAVFGMAFAAAGYGASKGRRDFQSSSQMVAGRYDVLCEPRNAEQAREMLAKLAM 166
>gi|25027741|ref|NP_737795.1| hypothetical protein CE1185 [Corynebacterium efficiens YS-314]
gi|259506858|ref|ZP_05749758.1| membrane protein [Corynebacterium efficiens YS-314]
gi|23493024|dbj|BAC17995.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
gi|259165490|gb|EEW50044.1| membrane protein [Corynebacterium efficiens YS-314]
Length=172
Score = 195 bits (496), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 94/155 (61%), Positives = 117/155 (76%), Gaps = 0/155 (0%)
Query 18 AGAGRRGVPALPTPPKGWPVGSYPTYAEAQRAVDYLSEQQFPVQQVTIVGVDLMQVERVT 77
+G R L P+GWPVGS+ TY EAQRAVD LS+ +FPV ++TIVGVDLM+VE VT
Sbjct 8 SGGNNRAELGLKKRPEGWPVGSFQTYEEAQRAVDMLSDNEFPVAELTIVGVDLMEVETVT 67
Query 78 GRLTWPKVLGGGVLSGAWLGLFIGLVLGFFSPNPWSALVTGLVAGVFFGLITSAVPYAMA 137
GRLTW +VL GG SGAWLGLF GLV+G S +S+L+TGLV GV FG++ +AVPY +
Sbjct 68 GRLTWGRVLAGGAASGAWLGLFFGLVMGLVSNLWFSSLLTGLVMGVVFGVVLAAVPYWAS 127
Query 138 RGTRDFSSTMQLVAGRYDVLCDPQNAEKARDLLAR 172
RG RDF+S Q+VAGRYD+LC P A +ARD++AR
Sbjct 128 RGKRDFTSATQIVAGRYDILCRPDRAREARDMIAR 162
>gi|213964417|ref|ZP_03392617.1| conserved hypothetical protein [Corynebacterium amycolatum SK46]
gi|213952610|gb|EEB63992.1| conserved hypothetical protein [Corynebacterium amycolatum SK46]
Length=181
Score = 192 bits (487), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 93/145 (65%), Positives = 115/145 (80%), Gaps = 1/145 (0%)
Query 32 PKGWPVGSYPTYAEAQRAVDYLSEQ-QFPVQQVTIVGVDLMQVERVTGRLTWPKVLGGGV 90
P+GWPVGS+ YA+AQ AVD LS++ +FPV +TIVGVDLMQVERV GRLTWPKVLGGG
Sbjct 32 PEGWPVGSFTNYADAQAAVDSLSDRDEFPVSDLTIVGVDLMQVERVVGRLTWPKVLGGGA 91
Query 91 LSGAWLGLFIGLVLGFFSPNPWSALVTGLVAGVFFGLITSAVPYAMARGTRDFSSTMQLV 150
L G W+GLF GL+LG F + S L+ GL G FG++ +AVPYAM G RDFS+T ++V
Sbjct 92 LYGLWMGLFFGLILGLFQEDWVSPLIVGLGMGAIFGIVLAAVPYAMQNGKRDFSTTTEIV 151
Query 151 AGRYDVLCDPQNAEKARDLLARLAI 175
A RYDVLC+P+NAE+ARDLLA+ A+
Sbjct 152 ARRYDVLCNPRNAERARDLLAQRAL 176
>gi|300783007|ref|YP_003763298.1| hypothetical protein AMED_1079 [Amycolatopsis mediterranei U32]
gi|299792521|gb|ADJ42896.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
gi|340524384|gb|AEK39589.1| hypothetical protein RAM_05485 [Amycolatopsis mediterranei S699]
Length=176
Score = 191 bits (485), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 99/165 (60%), Positives = 123/165 (75%), Gaps = 2/165 (1%)
Query 13 STPAAAGAGRRGVPALPTPPKGWPVGSYPTYAEAQRAVDYLSEQQFPVQQVTIVGVDLMQ 72
S+P G G+P LPTPP GWP+GSY TY EAQ+AVD+L+E +F V VTIVGVDLM
Sbjct 5 SSPFGGGRAPGGLPRLPTPPTGWPIGSYATYGEAQQAVDFLAESEFAVGDVTIVGVDLML 64
Query 73 VERVTGRLTWPKVLGGGVLSGAWLGLFIGLVLGFFSPNPWS-ALVTGLVAGVFFGLITSA 131
VERV GRLTW +VL G +SGAW G+F GL+LG F + ++TGLV GV GL+ +A
Sbjct 65 VERVIGRLTWGRVLATGAMSGAWFGVFAGLLLGLFVNQGFVLQVLTGLVLGVLSGLMFAA 124
Query 132 VPYAMARG-TRDFSSTMQLVAGRYDVLCDPQNAEKARDLLARLAI 175
+ Y+M+RG RDFSS QLVAGRYDVLC P++AE+ R+LLARLA+
Sbjct 125 IGYSMSRGRRRDFSSASQLVAGRYDVLCQPRSAERGRELLARLAL 169
>gi|300781483|ref|ZP_07091337.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
33030]
gi|300533190|gb|EFK54251.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
33030]
Length=249
Score = 190 bits (483), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 91/142 (65%), Positives = 111/142 (79%), Gaps = 0/142 (0%)
Query 32 PKGWPVGSYPTYAEAQRAVDYLSEQQFPVQQVTIVGVDLMQVERVTGRLTWPKVLGGGVL 91
P GWPVGS+ TYAEAQ AVD LS+++FPV+ +TIVGVDLMQVE+VTGRLTW +VLGGG L
Sbjct 17 PSGWPVGSFNTYAEAQAAVDGLSDREFPVENLTIVGVDLMQVEKVTGRLTWGRVLGGGAL 76
Query 92 SGAWLGLFIGLVLGFFSPNPWSALVTGLVAGVFFGLITSAVPYAMARGTRDFSSTMQLVA 151
SG WLGLF+GL+ FSPN W +L T LV GV FGLI +A YA +G RDFSS +VA
Sbjct 77 SGLWLGLFVGLLFAMFSPNVWGSLFTALVIGVIFGLIFAAAGYAFTQGKRDFSSMTTIVA 136
Query 152 GRYDVLCDPQNAEKARDLLARL 173
GRYDVLC+ A +ARD++ ++
Sbjct 137 GRYDVLCEASQAPRARDMINQM 158
>gi|319950430|ref|ZP_08024345.1| hypothetical protein ES5_12650 [Dietzia cinnamea P4]
gi|319435894|gb|EFV91099.1| hypothetical protein ES5_12650 [Dietzia cinnamea P4]
Length=164
Score = 189 bits (479), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/159 (65%), Positives = 127/159 (80%), Gaps = 2/159 (1%)
Query 19 GAGRRG--VPALPTPPKGWPVGSYPTYAEAQRAVDYLSEQQFPVQQVTIVGVDLMQVERV 76
GA RG P LPTPP GW VGSYPTYA+AQ AVD+L+++ FPV +VTIVGVDLMQVERV
Sbjct 5 GARARGAQTPGLPTPPTGWVVGSYPTYAQAQAAVDHLADEDFPVHEVTIVGVDLMQVERV 64
Query 77 TGRLTWPKVLGGGVLSGAWLGLFIGLVLGFFSPNPWSALVTGLVAGVFFGLITSAVPYAM 136
TGRLTWPKVL GG+ +GAWLGLF GL+LG F+ W ++TGL+ G FG++++++ YA
Sbjct 65 TGRLTWPKVLLGGLATGAWLGLFFGLLLGIFTQPMWGVVLTGLIGGSVFGVVSASLSYAA 124
Query 137 ARGTRDFSSTMQLVAGRYDVLCDPQNAEKARDLLARLAI 175
RG RDF+ST QLVAGRYDVLC+P +AE+ RD LARL +
Sbjct 125 TRGKRDFASTSQLVAGRYDVLCEPASAERVRDELARLGL 163
>gi|257055005|ref|YP_003132837.1| hypothetical protein Svir_09530 [Saccharomonospora viridis DSM
43017]
gi|256584877|gb|ACU96010.1| hypothetical protein Svir_09530 [Saccharomonospora viridis DSM
43017]
Length=173
Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 91/151 (61%), Positives = 115/151 (77%), Gaps = 1/151 (0%)
Query 26 PALPTPPKGWPVGSYPTYAEAQRAVDYLSEQQFPVQQVTIVGVDLMQVERVTGRLTWPKV 85
P LPT P GWP+GSY TYAEAQRAVD+L+ + FPVQ VTIVGVD + VERV RLTW KV
Sbjct 17 PGLPTMPTGWPIGSYDTYAEAQRAVDHLAGKDFPVQDVTIVGVDPLLVERVATRLTWGKV 76
Query 86 LGGGVLSGAWLGLFIGLVLGFFSPNP-WSALVTGLVAGVFFGLITSAVPYAMARGTRDFS 144
LGGG +SGAW GLF+G++L +P P ++ ++ G+++GV FGL +A YA+ R R+F
Sbjct 77 LGGGAMSGAWFGLFVGVLLSLATPGPVFTPILIGVLSGVGFGLAFAAANYAVMRKRRNFI 136
Query 145 STMQLVAGRYDVLCDPQNAEKARDLLARLAI 175
S QLVA RYDVLC P+NAE R+LLA+LA+
Sbjct 137 SHSQLVARRYDVLCQPRNAENGRNLLAQLAM 167
>gi|227487908|ref|ZP_03918224.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227542548|ref|ZP_03972597.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
ATCC 51866]
gi|227092114|gb|EEI27426.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227181746|gb|EEI62718.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
ATCC 51866]
Length=222
Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 86/141 (61%), Positives = 106/141 (76%), Gaps = 0/141 (0%)
Query 31 PPKGWPVGSYPTYAEAQRAVDYLSEQQFPVQQVTIVGVDLMQVERVTGRLTWPKVLGGGV 90
PP GWPVGS+ TYAEAQ AVD LS++ FPVQ +TIVGVDLMQVE V G+LTW KVLG G
Sbjct 2 PPTGWPVGSFKTYAEAQAAVDMLSDKDFPVQALTIVGVDLMQVENVHGKLTWGKVLGTGA 61
Query 91 LSGAWLGLFIGLVLGFFSPNPWSALVTGLVAGVFFGLITSAVPYAMARGTRDFSSTMQLV 150
SGAW+GLF GL++G FS + LV+GLV G FG + +A+ Y + G RDF+ST +V
Sbjct 62 ASGAWMGLFFGLLMGMFSATFLAPLVSGLVIGAIFGAVFAAIAYGASNGKRDFTSTTSIV 121
Query 151 AGRYDVLCDPQNAEKARDLLA 171
A RYDVLC ++A +ARDL+A
Sbjct 122 ATRYDVLCSEKDAPQARDLIA 142
>gi|302524362|ref|ZP_07276704.1| transmembrane protein [Streptomyces sp. AA4]
gi|302433257|gb|EFL05073.1| transmembrane protein [Streptomyces sp. AA4]
Length=175
Score = 181 bits (459), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 101/165 (62%), Positives = 121/165 (74%), Gaps = 2/165 (1%)
Query 13 STPAAAGAGRRGVPALPTPPKGWPVGSYPTYAEAQRAVDYLSEQQFPVQQVTIVGVDLMQ 72
S+P G G G+P LPTPP GWP+GSY TY EAQ+AVD+L+E +F V VTIVGVDLM
Sbjct 4 SSPFGGGQGPAGLPRLPTPPTGWPIGSYSTYGEAQQAVDFLAESEFAVTDVTIVGVDLML 63
Query 73 VERVTGRLTWPKVLGGGVLSGAWLGLFIGLVLGFFSPNPWSAL--VTGLVAGVFFGLITS 130
VERV GRL+W +VL G +SGAW GLF GL+LG F AL +TGLV GV GL S
Sbjct 64 VERVIGRLSWGRVLAAGAMSGAWFGLFAGLLLGMFVNQGGFALQLLTGLVLGVLSGLAFS 123
Query 131 AVPYAMARGTRDFSSTMQLVAGRYDVLCDPQNAEKARDLLARLAI 175
A+ Y +RG RDFSS QLVAGRYDVLC P++AE+ R+LLA+LA+
Sbjct 124 AIGYRTSRGRRDFSSASQLVAGRYDVLCQPRSAEQGRELLAKLAL 168
>gi|331694913|ref|YP_004331152.1| hypothetical protein Psed_1048 [Pseudonocardia dioxanivorans
CB1190]
gi|326949602|gb|AEA23299.1| hypothetical protein Psed_1048 [Pseudonocardia dioxanivorans
CB1190]
Length=178
Score = 181 bits (458), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 106/179 (60%), Positives = 129/179 (73%), Gaps = 16/179 (8%)
Query 1 MTSPFQPRQVPGSTPAAAGAGRR--GVPALPTPPKGWPVGSYPTYAEAQRAVDYLSEQQF 58
MT+PF G+GR G+P LPTPP GWPVGSY TY EAQRAVD+L++ F
Sbjct 1 MTAPF------------GGSGRAVPGLPNLPTPPTGWPVGSYATYEEAQRAVDHLADSDF 48
Query 59 PVQQVTIVGVDLMQVERVTGRLTWPKVLGGGVLSGAWLGLFIGLVLGFF--SPNPWSALV 116
PV+ VTIVGVDLM VERV GRLTW +VL G SGAW GLF GL+LG + P+ A++
Sbjct 49 PVRDVTIVGVDLMLVERVIGRLTWGRVLMSGGASGAWFGLFFGLLLGLVGTTTAPFVAVL 108
Query 117 TGLVAGVFFGLITSAVPYAMARGTRDFSSTMQLVAGRYDVLCDPQNAEKARDLLARLAI 175
GLV G+ FG+I +AV Y +RG RDF+S Q+VAGRYDVLC P+NAEKAR+LLA+LA+
Sbjct 109 IGLVGGMIFGIILAAVGYGASRGRRDFTSASQMVAGRYDVLCQPRNAEKARELLAKLAM 167
>gi|227548416|ref|ZP_03978465.1| conserved hypothetical protein [Corynebacterium lipophiloflavum
DSM 44291]
gi|227079460|gb|EEI17423.1| conserved hypothetical protein [Corynebacterium lipophiloflavum
DSM 44291]
Length=192
Score = 179 bits (454), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 89/170 (53%), Positives = 116/170 (69%), Gaps = 2/170 (1%)
Query 8 RQVPGSTPAAAGAGRRGVPALPTPPKGWPVGSYPTYAEAQRAVDYLSEQQFPVQQVTIVG 67
R V T + + R + P GWPVGS+ TY +AQRAVD LS+++F V+ ++IVG
Sbjct 14 RNVVPMTTSHSSTSNRNLATARQRPAGWPVGSFDTYEQAQRAVDGLSDRKFRVEDLSIVG 73
Query 68 VDLMQVERVTGRLTWPKVLGGGVLSGAWLGLFIGLVLGFFS--PNPWSALVTGLVAGVFF 125
VDLMQVE VTGRLTWP+VLG G LSGAWLG+FIGL+ F+ W + ++ G F
Sbjct 74 VDLMQVENVTGRLTWPRVLGAGALSGAWLGIFIGLIFALFALPGTGWIIFLWSILIGAIF 133
Query 126 GLITSAVPYAMARGTRDFSSTMQLVAGRYDVLCDPQNAEKARDLLARLAI 175
G+I +AV YA+ G RDFSS +VAGRYD+LCDP +A +ARDL+A + I
Sbjct 134 GVIFAAVGYALTGGKRDFSSMTTIVAGRYDILCDPNSAPQARDLIAEMNI 183
>gi|145295269|ref|YP_001138090.1| hypothetical protein cgR_1210 [Corynebacterium glutamicum R]
gi|140845189|dbj|BAF54188.1| hypothetical protein [Corynebacterium glutamicum R]
Length=172
Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 81/140 (58%), Positives = 111/140 (80%), Gaps = 0/140 (0%)
Query 32 PKGWPVGSYPTYAEAQRAVDYLSEQQFPVQQVTIVGVDLMQVERVTGRLTWPKVLGGGVL 91
P+GWPVGS+ TY EAQ AVD LS+ FPV ++TIVGVDL++VERVTGRLTW +V+ GG+
Sbjct 25 PEGWPVGSFETYPEAQAAVDLLSDNAFPVTELTIVGVDLIEVERVTGRLTWGRVIAGGMA 84
Query 92 SGAWLGLFIGLVLGFFSPNPWSALVTGLVAGVFFGLITSAVPYAMARGTRDFSSTMQLVA 151
SGAWLGLF G+V+ S +S++ G+ G+ FG++ +AVPYA ++G RDF+S+ Q+VA
Sbjct 85 SGAWLGLFFGIVMALMSGFWFSSIAAGIGMGLVFGIVGAAVPYAASKGKRDFTSSTQIVA 144
Query 152 GRYDVLCDPQNAEKARDLLA 171
GRYDV+C P+ A +ARD++A
Sbjct 145 GRYDVICSPERAREARDMIA 164
>gi|21323893|dbj|BAB98519.1| Hypothetical membrane protein [Corynebacterium glutamicum ATCC
13032]
Length=172
Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 81/140 (58%), Positives = 111/140 (80%), Gaps = 0/140 (0%)
Query 32 PKGWPVGSYPTYAEAQRAVDYLSEQQFPVQQVTIVGVDLMQVERVTGRLTWPKVLGGGVL 91
P+GWPVGS+ TY EAQ AVD LS+ FPV ++TIVGVDL++VERVTGRLTW +V+ GG+
Sbjct 25 PEGWPVGSFETYPEAQAAVDLLSDNAFPVTELTIVGVDLIEVERVTGRLTWGRVIAGGMA 84
Query 92 SGAWLGLFIGLVLGFFSPNPWSALVTGLVAGVFFGLITSAVPYAMARGTRDFSSTMQLVA 151
SGAWLGLF G+V+ S +S++ G+ G+ FG++ +AVPYA ++G RDF+S+ Q+VA
Sbjct 85 SGAWLGLFFGIVMALMSGFWFSSIAAGIGMGLVFGIVGAAVPYAASKGKRDFTSSTQIVA 144
Query 152 GRYDVLCDPQNAEKARDLLA 171
GRYDV+C P+ A +ARD++A
Sbjct 145 GRYDVICSPERAREARDMIA 164
>gi|344045758|gb|EGV41428.1| hypothetical protein CgS9114_03548 [Corynebacterium glutamicum
S9114]
Length=165
Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 81/140 (58%), Positives = 111/140 (80%), Gaps = 0/140 (0%)
Query 32 PKGWPVGSYPTYAEAQRAVDYLSEQQFPVQQVTIVGVDLMQVERVTGRLTWPKVLGGGVL 91
P+GWPVGS+ TY EAQ AVD LS+ FPV ++TIVGVDL++VERVTGRLTW +V+ GG+
Sbjct 18 PEGWPVGSFETYPEAQAAVDLLSDNAFPVTELTIVGVDLIEVERVTGRLTWGRVIAGGMA 77
Query 92 SGAWLGLFIGLVLGFFSPNPWSALVTGLVAGVFFGLITSAVPYAMARGTRDFSSTMQLVA 151
SGAWLGLF G+V+ S +S++ G+ G+ FG++ +AVPYA ++G RDF+S+ Q+VA
Sbjct 78 SGAWLGLFFGIVMALMSGFWFSSIAAGIGMGLVFGIVGAAVPYAASKGKRDFTSSTQIVA 137
Query 152 GRYDVLCDPQNAEKARDLLA 171
GRYDV+C P+ A +ARD++A
Sbjct 138 GRYDVICSPERAREARDMIA 157
>gi|19552352|ref|NP_600354.1| hypothetical protein NCgl1081 [Corynebacterium glutamicum ATCC
13032]
gi|62390016|ref|YP_225418.1| hypothetical protein cg1277 [Corynebacterium glutamicum ATCC
13032]
gi|41325352|emb|CAF19832.1| conserved hypothetical membrane protein [Corynebacterium glutamicum
ATCC 13032]
Length=165
Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 81/140 (58%), Positives = 111/140 (80%), Gaps = 0/140 (0%)
Query 32 PKGWPVGSYPTYAEAQRAVDYLSEQQFPVQQVTIVGVDLMQVERVTGRLTWPKVLGGGVL 91
P+GWPVGS+ TY EAQ AVD LS+ FPV ++TIVGVDL++VERVTGRLTW +V+ GG+
Sbjct 18 PEGWPVGSFETYPEAQAAVDLLSDNAFPVTELTIVGVDLIEVERVTGRLTWGRVIAGGMA 77
Query 92 SGAWLGLFIGLVLGFFSPNPWSALVTGLVAGVFFGLITSAVPYAMARGTRDFSSTMQLVA 151
SGAWLGLF G+V+ S +S++ G+ G+ FG++ +AVPYA ++G RDF+S+ Q+VA
Sbjct 78 SGAWLGLFFGIVMALMSGFWFSSIAAGIGMGLVFGIVGAAVPYAASKGKRDFTSSTQIVA 137
Query 152 GRYDVLCDPQNAEKARDLLA 171
GRYDV+C P+ A +ARD++A
Sbjct 138 GRYDVICSPERAREARDMIA 157
>gi|237785250|ref|YP_002905955.1| hypothetical protein ckrop_0649 [Corynebacterium kroppenstedtii
DSM 44385]
gi|237758162|gb|ACR17412.1| hypothetical protein ckrop_0649 [Corynebacterium kroppenstedtii
DSM 44385]
Length=173
Score = 177 bits (448), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 87/165 (53%), Positives = 116/165 (71%), Gaps = 5/165 (3%)
Query 13 STPAAAG----AGRRGVPALPTPPKGWPVGSYPTYAEAQRAVDYLS-EQQFPVQQVTIVG 67
+TP+A+G G +G LP P+GWP+GS+ Y AQ AVD LS E+ FPV +TIVG
Sbjct 2 TTPSASGFGATLGAQGSQGLPQRPEGWPIGSFEDYESAQHAVDSLSDEEDFPVDDITIVG 61
Query 68 VDLMQVERVTGRLTWPKVLGGGVLSGAWLGLFIGLVLGFFSPNPWSALVTGLVAGVFFGL 127
V+LMQVERVT RL+W KVL GG +SGAW+G+F GL++G F+ L G G FGL
Sbjct 62 VNLMQVERVTSRLSWGKVLSGGAISGAWMGVFFGLLVGLFTNEFLGPLALGAAMGALFGL 121
Query 128 ITSAVPYAMARGTRDFSSTMQLVAGRYDVLCDPQNAEKARDLLAR 172
I+ A+PY +G RDF+ST Q+VAGRYDVL P++A++ R++L+R
Sbjct 122 ISVAIPYGAMKGRRDFASTTQIVAGRYDVLSKPRSAQRGREILSR 166
>gi|284033274|ref|YP_003383205.1| hypothetical protein Kfla_5393 [Kribbella flavida DSM 17836]
gi|283812567|gb|ADB34406.1| hypothetical protein Kfla_5393 [Kribbella flavida DSM 17836]
Length=171
Score = 167 bits (422), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 83/155 (54%), Positives = 112/155 (73%), Gaps = 2/155 (1%)
Query 23 RGVPALPTPPKGWPVGSYPTYAEAQRAVDYLSEQQFPVQQVTIVGVDLMQVERVTGRLTW 82
+G+P++ P G +G+Y TY EAQRAVDYLS+++FPV+ TIVG +L QVE++TGRLTW
Sbjct 4 QGMPSMDPRPTGLTIGTYDTYLEAQRAVDYLSDEKFPVEHTTIVGNNLRQVEKITGRLTW 63
Query 83 PKVLGGGVLSGAWLGLFIGLVLGFF-SPNPW-SALVTGLVAGVFFGLITSAVPYAMARGT 140
+ L G+ SGAW GLF+G++LG F S W +ALVTG+V G FG+ A+ YA G
Sbjct 64 ARALTAGLASGAWFGLFVGVLLGLFTSEGGWLAALVTGVVLGAIFGMAFGAIGYAQLGGR 123
Query 141 RDFSSTMQLVAGRYDVLCDPQNAEKARDLLARLAI 175
RDF+S +VA YDVLCD + AE+AR+ LA+LA+
Sbjct 124 RDFTSRTAVVATTYDVLCDFKYAEEARNHLAKLAL 158
>gi|38233595|ref|NP_939362.1| hypothetical protein DIP1000 [Corynebacterium diphtheriae NCTC
13129]
gi|38199855|emb|CAE49518.1| Conserved hypothetical membrane protein [Corynebacterium diphtheriae]
Length=169
Score = 167 bits (422), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 79/141 (57%), Positives = 104/141 (74%), Gaps = 0/141 (0%)
Query 32 PKGWPVGSYPTYAEAQRAVDYLSEQQFPVQQVTIVGVDLMQVERVTGRLTWPKVLGGGVL 91
P+GWPVGS+ +YA+AQ AVD L++ FPV ++TIVGVDLM+VERV G+LTW +VL GG
Sbjct 23 PEGWPVGSFESYAQAQAAVDMLADNNFPVDKLTIVGVDLMEVERVVGKLTWGRVLIGGAA 82
Query 92 SGAWLGLFIGLVLGFFSPNPWSALVTGLVAGVFFGLITSAVPYAMARGTRDFSSTMQLVA 151
SGAW+GLF+ +V+G S +AL+ G+ GV FG+ +AV YA G RDF+S+ +VA
Sbjct 83 SGAWMGLFVAVVMGMVSGTWGAALMMGIPLGVVFGMGLAAVQYASTNGKRDFASSTHIVA 142
Query 152 GRYDVLCDPQNAEKARDLLAR 172
GRYDVLC P A +ARD +A
Sbjct 143 GRYDVLCHPSAAREARDTIAN 163
>gi|305682166|ref|ZP_07404970.1| conserved hypothetical protein [Corynebacterium matruchotii ATCC
14266]
gi|305658639|gb|EFM48142.1| conserved hypothetical protein [Corynebacterium matruchotii ATCC
14266]
Length=159
Score = 157 bits (397), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 85/150 (57%), Positives = 111/150 (74%), Gaps = 2/150 (1%)
Query 26 PALPTP-PKGWPVGSYPTYAEAQRAVDYLSEQQFPVQQVTIVGVDLMQVERVTGRLTWPK 84
PA P P GWPVGS+ TY +AQ AVD LS++QF V +TIVG+DLM+VERVTGRLTWP+
Sbjct 5 PAESRPRPAGWPVGSFSTYDKAQAAVDMLSDKQFDVSNITIVGLDLMEVERVTGRLTWPR 64
Query 85 VLGGGVLSGAWLGLFIGLVLGFFSPNPW-SALVTGLVAGVFFGLITSAVPYAMARGTRDF 143
V+ GV+SG+WLGLF GL+LG W +++ G+ G+ F ++T++V YAM G RDF
Sbjct 65 VILNGVVSGSWLGLFFGLLLGIMDGTNWLGSIILGVGMGIVFSVVTASVSYAMQGGRRDF 124
Query 144 SSTMQLVAGRYDVLCDPQNAEKARDLLARL 173
SS +VAGRYDVLCDP +A +ARDL++
Sbjct 125 SSATHIVAGRYDVLCDPHSAPQARDLISEF 154
>gi|302525055|ref|ZP_07277397.1| transmembrane protein [Streptomyces sp. AA4]
gi|302433950|gb|EFL05766.1| transmembrane protein [Streptomyces sp. AA4]
Length=173
Score = 154 bits (389), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 79/150 (53%), Positives = 99/150 (66%), Gaps = 1/150 (0%)
Query 26 PALPTPPKGWPVGSYPTYAEAQRAVDYLSEQQFPVQQVTIVGVDLMQVERVTGRLTWPKV 85
P LPT P GWP+GSY +Y +AQ+AVD+L+ FPV VTIVGV M VER+ G+++W ++
Sbjct 17 PQLPTLPTGWPIGSYESYEQAQQAVDHLAHADFPVTDVTIVGVQPMLVERIAGKMSWSRM 76
Query 86 LGGGVLSGAWLGLFIGLVLGFFSPNP-WSALVTGLVAGVFFGLITSAVPYAMARGTRDFS 144
L +SGA GLF+GLVL +P ++V GL AGV F + A+ YA R R F
Sbjct 77 LSSAAMSGAVFGLFLGLVLSMLNPAAGLLSIVLGLAAGVVFNVAFGALGYAANRNKRGFI 136
Query 145 STMQLVAGRYDVLCDPQNAEKARDLLARLA 174
S QLVA RYDVL P+NAEK R LLA LA
Sbjct 137 SQSQLVAQRYDVLSQPRNAEKGRQLLADLA 166
>gi|229821393|ref|YP_002882919.1| hypothetical protein Bcav_2912 [Beutenbergia cavernae DSM 12333]
gi|229567306|gb|ACQ81157.1| conserved hypothetical protein [Beutenbergia cavernae DSM 12333]
Length=238
Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 79/153 (52%), Positives = 102/153 (67%), Gaps = 1/153 (0%)
Query 21 GRRGVPALPTPPKGWPVGSYPTYAEAQRAVDYLSEQQFPVQQVTIVGVDLMQVERVTGRL 80
G R P +PT P G V SY TY EAQ+AVD+LS+++F VQ VTIVG DL VER+TGRL
Sbjct 5 GTRRAPQVPTLPTGEEVASYATYLEAQQAVDFLSDREFAVQNVTIVGSDLRMVERITGRL 64
Query 81 TWPKVLGGGVLSGAWLGLFIGLVLGF-FSPNPWSALVTGLVAGVFFGLITSAVPYAMARG 139
T+P+V G G LSGAW G+F+GL+LG N L+ + G FG++ V Y+ G
Sbjct 65 TYPRVAGAGALSGAWFGIFVGLLLGLVMGQNLLLVLLPAMAIGAAFGMLFGVVSYSFTGG 124
Query 140 TRDFSSTMQLVAGRYDVLCDPQNAEKARDLLAR 172
RDF+S+ Q+VA RY +LC P+ A +AR LLA
Sbjct 125 KRDFTSSSQVVANRYSLLCLPERAGEARALLAE 157
>gi|220913254|ref|YP_002488563.1| hypothetical protein Achl_2509 [Arthrobacter chlorophenolicus
A6]
gi|219860132|gb|ACL40474.1| conserved hypothetical protein [Arthrobacter chlorophenolicus
A6]
Length=328
Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 76/145 (53%), Positives = 107/145 (74%), Gaps = 1/145 (0%)
Query 32 PKGWPVGSYPTYAEAQRAVDYLSEQQFPVQQVTIVGVDLMQVERVTGRLTWPKVLGGGVL 91
P G VGSY +Y +AQ+AVDYL++QQFPVQ V+IVG +L VERVTGRL++P+V G L
Sbjct 23 PTGDTVGSYTSYLDAQKAVDYLADQQFPVQMVSIVGNELKMVERVTGRLSYPRVALSGAL 82
Query 92 SGAWLGLFIGLVLGFFSPNP-WSALVTGLVAGVFFGLITSAVPYAMARGTRDFSSTMQLV 150
SG W GLF+G++L FF+P+P + +++T ++ G F ++ V YAM RG RDF+ST Q+V
Sbjct 83 SGMWFGLFVGVMLSFFAPSPGYFSILTSVLMGAAFFMLFGIVTYAMQRGKRDFTSTSQVV 142
Query 151 AGRYDVLCDPQNAEKARDLLARLAI 175
A YDV+ P+ A++AR LL +L +
Sbjct 143 ATSYDVIVAPEAAQEARRLLQQLPM 167
>gi|325963999|ref|YP_004241905.1| hypothetical protein Asphe3_26510 [Arthrobacter phenanthrenivorans
Sphe3]
gi|323470086|gb|ADX73771.1| hypothetical protein Asphe3_26510 [Arthrobacter phenanthrenivorans
Sphe3]
Length=309
Score = 150 bits (380), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 75/145 (52%), Positives = 105/145 (73%), Gaps = 1/145 (0%)
Query 32 PKGWPVGSYPTYAEAQRAVDYLSEQQFPVQQVTIVGVDLMQVERVTGRLTWPKVLGGGVL 91
P G VGSY +Y +AQ+AVDYL++QQFPV V+IVG +L VERVTGRL++P+V G L
Sbjct 23 PTGDTVGSYTSYLDAQKAVDYLADQQFPVHMVSIVGNELKMVERVTGRLSYPRVALSGAL 82
Query 92 SGAWLGLFIGLVLGFFSPNP-WSALVTGLVAGVFFGLITSAVPYAMARGTRDFSSTMQLV 150
SG W GLF+G++L FF+P+P + +++T ++ G F ++ V YAM RG RDF+ST Q+V
Sbjct 83 SGMWFGLFVGVLLSFFAPSPGYFSILTSVLMGAAFFMLFGIVTYAMQRGKRDFTSTSQVV 142
Query 151 AGRYDVLCDPQNAEKARDLLARLAI 175
A YDV+ P+ A +AR LL +L +
Sbjct 143 ATSYDVVVSPEAAHEARRLLQQLPM 167
Lambda K H
0.321 0.138 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 145800812160
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40