BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1236
Length=307
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608376|ref|NP_215752.1| sugar-transport integral membrane p... 606 2e-171
gi|306807123|ref|ZP_07443791.1| sugar-transport membrane protein... 604 6e-171
gi|339294222|gb|AEJ46333.1| sugar-transport integral membrane pr... 603 1e-170
gi|308231790|ref|ZP_07663933.1| sugar-transport membrane protein... 569 2e-160
gi|240173002|ref|ZP_04751660.1| putative sugar-transport integra... 505 4e-141
gi|41408645|ref|NP_961481.1| SugA [Mycobacterium avium subsp. pa... 483 2e-134
gi|118462792|ref|YP_880619.1| ABC transporter permease [Mycobact... 482 4e-134
gi|183984177|ref|YP_001852468.1| sugar-transport integral membra... 480 1e-133
gi|296170137|ref|ZP_06851735.1| sugar ABC superfamily ATP bindin... 476 2e-132
gi|336458567|gb|EGO37534.1| permease component of ABC-type sugar... 469 2e-130
gi|15827532|ref|NP_301795.1| ABC transporter inner membrane prot... 464 6e-129
gi|699149|gb|AAA62915.1| malf [Mycobacterium leprae] 464 8e-129
gi|342862115|ref|ZP_08718758.1| SugA [Mycobacterium colombiense ... 460 1e-127
gi|254823049|ref|ZP_05228050.1| SugA [Mycobacterium intracellula... 459 2e-127
gi|333989847|ref|YP_004522461.1| sugar-transport integral membra... 459 3e-127
gi|126436571|ref|YP_001072262.1| binding-protein-dependent trans... 458 5e-127
gi|108800946|ref|YP_641143.1| binding-protein-dependent transpor... 456 1e-126
gi|118471165|ref|YP_889310.1| ABC transporter permease [Mycobact... 455 3e-126
gi|111022952|ref|YP_705924.1| sugar ABC transporter permease [Rh... 434 7e-120
gi|118619615|ref|YP_907947.1| sugar-transport integral membrane ... 434 9e-120
gi|226307633|ref|YP_002767593.1| ABC transporter permease protei... 431 9e-119
gi|229493745|ref|ZP_04387527.1| ABC sugar transporter, permease ... 430 1e-118
gi|296138927|ref|YP_003646170.1| binding-protein-dependent trans... 414 7e-114
gi|226365458|ref|YP_002783241.1| ABC transporter permease protei... 413 2e-113
gi|326382046|ref|ZP_08203739.1| binding-protein-dependent transp... 409 4e-112
gi|262201808|ref|YP_003273016.1| binding-protein-dependent trans... 408 5e-112
gi|343928020|ref|ZP_08767485.1| putative ABC transporter permeas... 407 8e-112
gi|169628464|ref|YP_001702113.1| sugar ABC transporter permease ... 391 9e-107
gi|257054716|ref|YP_003132548.1| carbohydrate ABC transporter me... 389 2e-106
gi|331694915|ref|YP_004331154.1| ABC transporter integral membra... 388 8e-106
gi|317508230|ref|ZP_07965910.1| inner membrane transporter [Segn... 387 1e-105
gi|213966432|ref|ZP_03394609.1| ABC sugar transporter, permease ... 385 6e-105
gi|300783009|ref|YP_003763300.1| sugar ABC transporter permease ... 382 3e-104
gi|238060005|ref|ZP_04604714.1| ABC sugar transporter permease c... 380 2e-103
gi|296394485|ref|YP_003659369.1| binding-protein-dependent trans... 379 2e-103
gi|291435775|ref|ZP_06575165.1| ABC sugar transporter [Streptomy... 379 3e-103
gi|330468991|ref|YP_004406734.1| binding-protein-dependent trans... 379 3e-103
gi|302562112|ref|ZP_07314454.1| sugar ABC transporter, permease ... 379 3e-103
gi|302868630|ref|YP_003837267.1| binding-protein-dependent trans... 377 9e-103
gi|291008814|ref|ZP_06566787.1| ABC sugar transporter, permease ... 376 3e-102
gi|134097642|ref|YP_001103303.1| ABC sugar transporter, permease... 375 4e-102
gi|302524364|ref|ZP_07276706.1| ABC sugar transporter [Streptomy... 373 2e-101
gi|312197858|ref|YP_004017919.1| sugar ABC transporter permease ... 364 1e-98
gi|256374955|ref|YP_003098615.1| ABC transporter inner membrane ... 362 5e-98
gi|288917512|ref|ZP_06411877.1| binding-protein-dependent transp... 360 1e-97
gi|158316385|ref|YP_001508893.1| binding-protein-dependent trans... 353 3e-95
gi|291302103|ref|YP_003513381.1| binding-protein-dependent trans... 352 3e-95
gi|291298567|ref|YP_003509845.1| binding-protein-dependent trans... 333 2e-89
gi|333918622|ref|YP_004492203.1| binding-protein-dependent trans... 319 3e-85
gi|333920160|ref|YP_004493741.1| binding-protein-dependent trans... 318 5e-85
>gi|15608376|ref|NP_215752.1| sugar-transport integral membrane protein ABC transporter SugA
[Mycobacterium tuberculosis H37Rv]
gi|15840681|ref|NP_335718.1| sugar ABC transporter, permease protein [Mycobacterium tuberculosis
CDC1551]
gi|31792429|ref|NP_854922.1| sugar-transport integral membrane protein ABC transporter SugA
[Mycobacterium bovis AF2122/97]
62 more sequence titles
Length=307
Score = 606 bits (1562), Expect = 2e-171, Method: Compositional matrix adjust.
Identities = 306/307 (99%), Positives = 307/307 (100%), Gaps = 0/307 (0%)
Query 1 VTSVEQRTATAVFSRTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLAT 60
+TSVEQRTATAVFSRTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLAT
Sbjct 1 MTSVEQRTATAVFSRTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLAT 60
Query 61 PNDTAFIGLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLV 120
PNDTAFIGLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLV
Sbjct 61 PNDTAFIGLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLV 120
Query 121 RTAVLIPYGIVTVVASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTT 180
RTAVLIPYGIVTVVASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTT
Sbjct 121 RTAVLIPYGIVTVVASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTT 180
Query 181 PFMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIF 240
PFMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIF
Sbjct 181 PFMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIF 240
Query 241 DNIYVLTGGSNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAP 300
DNIYVLTGGSNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAP
Sbjct 241 DNIYVLTGGSNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAP 300
Query 301 GGEPSGR 307
GGEPSGR
Sbjct 301 GGEPSGR 307
>gi|306807123|ref|ZP_07443791.1| sugar-transport membrane protein ABC transporter sugA [Mycobacterium
tuberculosis SUMu007]
gi|306967320|ref|ZP_07479981.1| sugar-transport membrane protein ABC transporter sugA [Mycobacterium
tuberculosis SUMu009]
gi|308346462|gb|EFP35313.1| sugar-transport membrane protein ABC transporter sugA [Mycobacterium
tuberculosis SUMu007]
gi|308355034|gb|EFP43885.1| sugar-transport membrane protein ABC transporter sugA [Mycobacterium
tuberculosis SUMu009]
Length=307
Score = 604 bits (1557), Expect = 6e-171, Method: Compositional matrix adjust.
Identities = 305/307 (99%), Positives = 307/307 (100%), Gaps = 0/307 (0%)
Query 1 VTSVEQRTATAVFSRTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLAT 60
+TSVEQRTATAVFSRTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQR+NLAT
Sbjct 1 MTSVEQRTATAVFSRTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRDNLAT 60
Query 61 PNDTAFIGLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLV 120
PNDTAFIGLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLV
Sbjct 61 PNDTAFIGLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLV 120
Query 121 RTAVLIPYGIVTVVASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTT 180
RTAVLIPYGIVTVVASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTT
Sbjct 121 RTAVLIPYGIVTVVASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTT 180
Query 181 PFMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIF 240
PFMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIF
Sbjct 181 PFMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIF 240
Query 241 DNIYVLTGGSNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAP 300
DNIYVLTGGSNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAP
Sbjct 241 DNIYVLTGGSNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAP 300
Query 301 GGEPSGR 307
GGEPSGR
Sbjct 301 GGEPSGR 307
>gi|339294222|gb|AEJ46333.1| sugar-transport integral membrane protein ABC transporter SugA
[Mycobacterium tuberculosis CCDC5079]
Length=307
Score = 603 bits (1555), Expect = 1e-170, Method: Compositional matrix adjust.
Identities = 305/307 (99%), Positives = 306/307 (99%), Gaps = 0/307 (0%)
Query 1 VTSVEQRTATAVFSRTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLAT 60
+TSVEQRTATAVFSRTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLAT
Sbjct 1 MTSVEQRTATAVFSRTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLAT 60
Query 61 PNDTAFIGLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLV 120
PNDTAFIGLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLV
Sbjct 61 PNDTAFIGLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLV 120
Query 121 RTAVLIPYGIVTVVASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTT 180
RTAVLIPYGIVTVVASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTT
Sbjct 121 RTAVLIPYGIVTVVASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTT 180
Query 181 PFMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIF 240
PFMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIF
Sbjct 181 PFMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIF 240
Query 241 DNIYVLTGGSNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAP 300
DNIYVLT GSNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAP
Sbjct 241 DNIYVLTDGSNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAP 300
Query 301 GGEPSGR 307
GGEPSGR
Sbjct 301 GGEPSGR 307
>gi|308231790|ref|ZP_07663933.1| sugar-transport membrane protein ABC transporter sugA [Mycobacterium
tuberculosis SUMu001]
gi|308370016|ref|ZP_07666847.1| sugar-transport membrane protein ABC transporter sugA [Mycobacterium
tuberculosis SUMu002]
gi|308373086|ref|ZP_07667508.1| sugar-transport membrane protein ABC transporter sugA [Mycobacterium
tuberculosis SUMu005]
8 more sequence titles
Length=288
Score = 569 bits (1467), Expect = 2e-160, Method: Compositional matrix adjust.
Identities = 288/288 (100%), Positives = 288/288 (100%), Gaps = 0/288 (0%)
Query 20 MAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILIDR 79
MAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILIDR
Sbjct 1 MAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILIDR 60
Query 80 YWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYSW 139
YWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYSW
Sbjct 61 YWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYSW 120
Query 140 YYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDLL 199
YYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDLL
Sbjct 121 YYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDLL 180
Query 200 RAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSIL 259
RAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSIL
Sbjct 181 RAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSIL 240
Query 260 GYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR 307
GYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR
Sbjct 241 GYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR 288
>gi|240173002|ref|ZP_04751660.1| putative sugar-transport integral membrane protein ABC transporter
[Mycobacterium kansasii ATCC 12478]
Length=299
Score = 505 bits (1300), Expect = 4e-141, Method: Compositional matrix adjust.
Identities = 259/298 (87%), Positives = 278/298 (94%), Gaps = 0/298 (0%)
Query 10 TAVFSRTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGL 69
T F R+G+R AE+RLAF+LVAPAA+LM+AVTAYPIGYA+WLSLQRNNLATP++TAFIGL
Sbjct 2 THAFVRSGNRRAEQRLAFILVAPAALLMLAVTAYPIGYAVWLSLQRNNLATPDETAFIGL 61
Query 70 GNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYG 129
NY T+L DRYWWTAL VTLAIT VSVT+EFVLGLALALVMHRTLIGKGLVRTAVLIPYG
Sbjct 62 ENYRTVLTDRYWWTALTVTLAITVVSVTLEFVLGLALALVMHRTLIGKGLVRTAVLIPYG 121
Query 130 IVTVVASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLA 189
IVTVVASYSWYYAWTPGTGYLANLLP+ SAPLTQQ+PSLG+VVIAEVWKTTPFMSLLLLA
Sbjct 122 IVTVVASYSWYYAWTPGTGYLANLLPHGSAPLTQQVPSLGVVVIAEVWKTTPFMSLLLLA 181
Query 190 GLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGG 249
GLALVPEDLL+AAQVDGA AWRRLTKVILP+IKPA+VVALLFRTLDAFRIFDNIYVLT G
Sbjct 182 GLALVPEDLLKAAQVDGAGAWRRLTKVILPIIKPAVVVALLFRTLDAFRIFDNIYVLTAG 241
Query 250 SNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR 307
NNT SVSILGYDNLFKGFNVGLGSAISVLIFGCV +IA FIKLFGAAAPG + GR
Sbjct 242 ENNTESVSILGYDNLFKGFNVGLGSAISVLIFGCVGIIALTFIKLFGAAAPGSDADGR 299
>gi|41408645|ref|NP_961481.1| SugA [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41397003|gb|AAS04864.1| SugA [Mycobacterium avium subsp. paratuberculosis K-10]
Length=311
Score = 483 bits (1242), Expect = 2e-134, Method: Compositional matrix adjust.
Identities = 247/289 (86%), Positives = 269/289 (94%), Gaps = 0/289 (0%)
Query 19 RMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILID 78
R +E+RLA +LVAPAA+LM+AVTAYPIGYA+WLSLQRNNLA P+DTAF+GL NY TIL D
Sbjct 23 RTSEQRLALVLVAPAAILMLAVTAYPIGYAVWLSLQRNNLAAPHDTAFVGLSNYATILSD 82
Query 79 RYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYS 138
RYWWTALAVTL IT VSV+ EFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVT VASYS
Sbjct 83 RYWWTALAVTLGITVVSVSAEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTAVASYS 142
Query 139 WYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDL 198
WYYAWTPGTGYLANLLP+ SAPLT QIPSL IVV+AEVWKTTPFMSLLLLAGLALVPEDL
Sbjct 143 WYYAWTPGTGYLANLLPHGSAPLTAQIPSLAIVVLAEVWKTTPFMSLLLLAGLALVPEDL 202
Query 199 LRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSI 258
L+AAQVDGA AWRRLT+V LP+IKPA+VVALLFRTLDAFRIFDNIYVLT G+NNTGSVS+
Sbjct 203 LKAAQVDGAGAWRRLTRVTLPIIKPAVVVALLFRTLDAFRIFDNIYVLTNGANNTGSVSM 262
Query 259 LGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR 307
LGYDNLFKGFNVGLGSAISVLIFGCV +IA +F+K+FGAAAPGG+ GR
Sbjct 263 LGYDNLFKGFNVGLGSAISVLIFGCVGLIALVFVKVFGAAAPGGDVDGR 311
>gi|118462792|ref|YP_880619.1| ABC transporter permease [Mycobacterium avium 104]
gi|254774253|ref|ZP_05215769.1| SugA [Mycobacterium avium subsp. avium ATCC 25291]
gi|118164079|gb|ABK64976.1| ABC transporter, permease protein SugA [Mycobacterium avium 104]
Length=292
Score = 482 bits (1240), Expect = 4e-134, Method: Compositional matrix adjust.
Identities = 246/289 (86%), Positives = 269/289 (94%), Gaps = 0/289 (0%)
Query 19 RMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILID 78
R +E+RLA +LVAPAA+LM+AVTAYPIGYA+WLSLQRNNLA P+DTAF+GL NY TIL D
Sbjct 4 RTSEQRLALVLVAPAAILMLAVTAYPIGYAVWLSLQRNNLAAPHDTAFVGLSNYATILSD 63
Query 79 RYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYS 138
RYWWTALAVTL IT VSV+ EFVLGLALALVMHRTL+GKGLVRTAVLIPYGIVT VASYS
Sbjct 64 RYWWTALAVTLGITVVSVSAEFVLGLALALVMHRTLVGKGLVRTAVLIPYGIVTAVASYS 123
Query 139 WYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDL 198
WYYAWTPGTGYLANLLP+ SAPLT QIPSL IVV+AEVWKTTPFMSLLLLAGLALVPEDL
Sbjct 124 WYYAWTPGTGYLANLLPHGSAPLTAQIPSLAIVVLAEVWKTTPFMSLLLLAGLALVPEDL 183
Query 199 LRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSI 258
L+AAQVDGA AWRRLT+V LP+IKPA+VVALLFRTLDAFRIFDNIYVLT G+NNTGSVS+
Sbjct 184 LKAAQVDGAGAWRRLTRVTLPIIKPAVVVALLFRTLDAFRIFDNIYVLTNGANNTGSVSM 243
Query 259 LGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR 307
LGYDNLFKGFNVGLGSAISVLIFGCV +IA +F+K+FGAAAPGG+ GR
Sbjct 244 LGYDNLFKGFNVGLGSAISVLIFGCVGLIALVFVKVFGAAAPGGDVDGR 292
>gi|183984177|ref|YP_001852468.1| sugar-transport integral membrane protein ABC transporter SugA
[Mycobacterium marinum M]
gi|183177503|gb|ACC42613.1| sugar-transport integral membrane protein ABC transporter SugA
[Mycobacterium marinum M]
Length=302
Score = 480 bits (1235), Expect = 1e-133, Method: Compositional matrix adjust.
Identities = 241/287 (84%), Positives = 259/287 (91%), Gaps = 4/287 (1%)
Query 25 LAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILIDRYWWTA 84
LAF LVAPA +LM+ V YPIGYA+WLSLQRNNLATPN+T FIGLGNY TIL+DRYWWTA
Sbjct 16 LAFALVAPATILMLLVIGYPIGYAMWLSLQRNNLATPNETRFIGLGNYQTILVDRYWWTA 75
Query 85 LAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYSWYYAWT 144
LAVT AIT VSV EFVLGLALALVMHR+L+ KGLVRTAVL+PYGIVTVVASYSWYYAWT
Sbjct 76 LAVTAAITVVSVACEFVLGLALALVMHRSLVAKGLVRTAVLVPYGIVTVVASYSWYYAWT 135
Query 145 PGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDLLRAAQV 204
PGTGYLANLLP SAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLA+VPEDLL+AAQV
Sbjct 136 PGTGYLANLLPQGSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLAMVPEDLLQAAQV 195
Query 205 DGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSILGYDNL 264
DGA AWRRLTK+ILP+IKPA++VALLFRTLDAFRIFDNIYVLTGG N+T SVSILGYDNL
Sbjct 196 DGAGAWRRLTKIILPLIKPAVLVALLFRTLDAFRIFDNIYVLTGGDNDTASVSILGYDNL 255
Query 265 FKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGA----AAPGGEPSGR 307
FKGFNVGLGSAISVLIFGCV +IA +FI LFGA +APGG R
Sbjct 256 FKGFNVGLGSAISVLIFGCVTLIAVVFITLFGAHQFHSAPGGVTDAR 302
>gi|296170137|ref|ZP_06851735.1| sugar ABC superfamily ATP binding cassette transporter, permease
protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295895199|gb|EFG74913.1| sugar ABC superfamily ATP binding cassette transporter, permease
protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=310
Score = 476 bits (1225), Expect = 2e-132, Method: Compositional matrix adjust.
Identities = 242/288 (85%), Positives = 267/288 (93%), Gaps = 0/288 (0%)
Query 20 MAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILIDR 79
++E RLAF LVAPAA+LM++VTAYPIGYA+WLSLQRNNLATP+DTAF+GL NY TIL DR
Sbjct 23 LSEWRLAFTLVAPAAILMLSVTAYPIGYAVWLSLQRNNLATPDDTAFVGLSNYQTILTDR 82
Query 80 YWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYSW 139
YWW+ALAVTL IT VSV++EFVLGLALALVMHRTL+G+G+VRTAVLIPYGIVTVVASYSW
Sbjct 83 YWWSALAVTLGITVVSVSLEFVLGLALALVMHRTLVGRGVVRTAVLIPYGIVTVVASYSW 142
Query 140 YYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDLL 199
YYAWTPGTGYLANLLP+ SAPLTQQIPSLGIVV+AEVWKTTPFMSLLLLAGLALVPEDLL
Sbjct 143 YYAWTPGTGYLANLLPHGSAPLTQQIPSLGIVVLAEVWKTTPFMSLLLLAGLALVPEDLL 202
Query 200 RAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSIL 259
RAAQVDGA WRRL +V LP+IKPA+VVALLFRTLDAFRIFDNIYVLT G+NNT SVSIL
Sbjct 203 RAAQVDGAGPWRRLVRVTLPIIKPAVVVALLFRTLDAFRIFDNIYVLTDGANNTDSVSIL 262
Query 260 GYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR 307
GYDNLFKGFNVGLGSAISVLIF C +IA ++IK+FG AAPGG+P G
Sbjct 263 GYDNLFKGFNVGLGSAISVLIFVCAGIIALVYIKVFGVAAPGGDPDGH 310
>gi|336458567|gb|EGO37534.1| permease component of ABC-type sugar transporter [Mycobacterium
avium subsp. paratuberculosis S397]
Length=270
Score = 469 bits (1207), Expect = 2e-130, Method: Compositional matrix adjust.
Identities = 234/271 (87%), Positives = 252/271 (93%), Gaps = 1/271 (0%)
Query 37 MVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILIDRYWWTALAVTLAITAVSV 96
M+AVTAYPIGYA+WLSLQRNNLA P+DTAF+GL NY TIL DRYWWTALAVTL IT VSV
Sbjct 1 MLAVTAYPIGYAVWLSLQRNNLAAPHDTAFVGLSNYATILSDRYWWTALAVTLGITVVSV 60
Query 97 TIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYSWYYAWTPGTGYLANLLPY 156
+ EFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVT VASYSWYYAWTPGTGYLANLLP+
Sbjct 61 SAEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTAVASYSWYYAWTPGTGYLANLLPH 120
Query 157 DSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKV 216
SAPLT QIPSL IVV+AEVWKTTPFMS LLLAGLALVPEDLL+AAQVDGA AWRRLT+V
Sbjct 121 GSAPLTAQIPSLAIVVLAEVWKTTPFMS-LLLAGLALVPEDLLKAAQVDGAGAWRRLTRV 179
Query 217 ILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSILGYDNLFKGFNVGLGSAI 276
LP+IKPA+VVALLFRTLDAFRIFDNIYVLT G+NNTGSVS+LGYDNLFKGFNVGLGSAI
Sbjct 180 TLPIIKPAVVVALLFRTLDAFRIFDNIYVLTNGANNTGSVSMLGYDNLFKGFNVGLGSAI 239
Query 277 SVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR 307
SVLIFGCV +IA +F+K+FGAAAPGG+ GR
Sbjct 240 SVLIFGCVGLIALVFVKVFGAAAPGGDVDGR 270
>gi|15827532|ref|NP_301795.1| ABC transporter inner membrane protein [Mycobacterium leprae
TN]
gi|221230009|ref|YP_002503425.1| putative ABC-transport protein, inner membrane component [Mycobacterium
leprae Br4923]
gi|13093082|emb|CAC31468.1| probable ABC-transport protein, inner membrane component [Mycobacterium
leprae]
gi|219933116|emb|CAR71182.1| probable ABC-transport protein, inner membrane component [Mycobacterium
leprae Br4923]
Length=304
Score = 464 bits (1195), Expect = 6e-129, Method: Compositional matrix adjust.
Identities = 239/292 (82%), Positives = 261/292 (90%), Gaps = 0/292 (0%)
Query 15 RTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHT 74
R S E+RLAF+LV PAAMLM+ VTAYPIGYA+WLSLQR +LATPN+T FIGLGNY T
Sbjct 12 RASSVQPEQRLAFLLVTPAAMLMLVVTAYPIGYAVWLSLQRYSLATPNETVFIGLGNYQT 71
Query 75 ILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVV 134
IL D YWWTALAVTLAIT VSV+IEF+LGL LALVMHRTL+GK LVR AVLIPY IVTVV
Sbjct 72 ILTDPYWWTALAVTLAITVVSVSIEFILGLMLALVMHRTLLGKSLVRIAVLIPYSIVTVV 131
Query 135 ASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALV 194
ASYSWYYAWTPGTGYLA+LLP S PLT+QIPSL IV+I EVWKTTPFMSLLLL GLALV
Sbjct 132 ASYSWYYAWTPGTGYLASLLPQGSVPLTEQIPSLSIVIIVEVWKTTPFMSLLLLVGLALV 191
Query 195 PEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTG 254
PEDLL+AAQ+DGA AWRRLTK+ILP+IKPA++VALLFRTLDAFRIFDNIYVLT G NNT
Sbjct 192 PEDLLKAAQMDGAGAWRRLTKIILPIIKPAVMVALLFRTLDAFRIFDNIYVLTRGVNNTD 251
Query 255 SVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSG 306
SVSILGYDNLFKGFNVGLGSAISVLIFGCVA+IA IFIK+FG APGG+ +G
Sbjct 252 SVSILGYDNLFKGFNVGLGSAISVLIFGCVALIAVIFIKVFGVVAPGGDSNG 303
>gi|699149|gb|AAA62915.1| malf [Mycobacterium leprae]
Length=310
Score = 464 bits (1194), Expect = 8e-129, Method: Compositional matrix adjust.
Identities = 239/292 (82%), Positives = 261/292 (90%), Gaps = 0/292 (0%)
Query 15 RTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHT 74
R S E+RLAF+LV PAAMLM+ VTAYPIGYA+WLSLQR +LATPN+T FIGLGNY T
Sbjct 18 RASSVQPEQRLAFLLVTPAAMLMLVVTAYPIGYAVWLSLQRYSLATPNETVFIGLGNYQT 77
Query 75 ILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVV 134
IL D YWWTALAVTLAIT VSV+IEF+LGL LALVMHRTL+GK LVR AVLIPY IVTVV
Sbjct 78 ILTDPYWWTALAVTLAITVVSVSIEFILGLMLALVMHRTLLGKSLVRIAVLIPYSIVTVV 137
Query 135 ASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALV 194
ASYSWYYAWTPGTGYLA+LLP S PLT+QIPSL IV+I EVWKTTPFMSLLLL GLALV
Sbjct 138 ASYSWYYAWTPGTGYLASLLPQGSVPLTEQIPSLSIVIIVEVWKTTPFMSLLLLVGLALV 197
Query 195 PEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTG 254
PEDLL+AAQ+DGA AWRRLTK+ILP+IKPA++VALLFRTLDAFRIFDNIYVLT G NNT
Sbjct 198 PEDLLKAAQMDGAGAWRRLTKIILPIIKPAVMVALLFRTLDAFRIFDNIYVLTRGVNNTD 257
Query 255 SVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSG 306
SVSILGYDNLFKGFNVGLGSAISVLIFGCVA+IA IFIK+FG APGG+ +G
Sbjct 258 SVSILGYDNLFKGFNVGLGSAISVLIFGCVALIAVIFIKVFGVVAPGGDSNG 309
>gi|342862115|ref|ZP_08718758.1| SugA [Mycobacterium colombiense CECT 3035]
gi|342130419|gb|EGT83734.1| SugA [Mycobacterium colombiense CECT 3035]
Length=311
Score = 460 bits (1184), Expect = 1e-127, Method: Compositional matrix adjust.
Identities = 240/292 (83%), Positives = 266/292 (92%), Gaps = 2/292 (0%)
Query 4 VEQRTATAVFS--RTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATP 61
+E TA A F+ R R E+RLAF+LVAPAA+LMVAVTAYPIGYA+WLSLQRNNLA P
Sbjct 6 IESHTARAPFAMRRLRGRPPEQRLAFLLVAPAAILMVAVTAYPIGYAVWLSLQRNNLAVP 65
Query 62 NDTAFIGLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVR 121
NDTAF+GL NY TIL DRYWWTALAVTL IT VSV++EFVLGLALALVMHRTL+GKG+VR
Sbjct 66 NDTAFVGLNNYVTILTDRYWWTALAVTLGITVVSVSLEFVLGLALALVMHRTLVGKGVVR 125
Query 122 TAVLIPYGIVTVVASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTP 181
TAVLIPYGIVTVVASYSWYYAWTPGTGYLA+LLP SAPLT+QIPSL IVV+AEVWKTTP
Sbjct 126 TAVLIPYGIVTVVASYSWYYAWTPGTGYLADLLPQGSAPLTEQIPSLAIVVLAEVWKTTP 185
Query 182 FMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFD 241
FMSLLLLAGLALVPEDLL+AAQVDGA AWRRLT VILP+IKPA+VVALLFRTLDAFR+FD
Sbjct 186 FMSLLLLAGLALVPEDLLKAAQVDGAGAWRRLTGVILPIIKPAVVVALLFRTLDAFRVFD 245
Query 242 NIYVLTGGSNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIK 293
NIYV+T G+N+TGSVS+LGYDNLFKGFNVGLGSAISVLIF C +IA++FI+
Sbjct 246 NIYVITNGANSTGSVSMLGYDNLFKGFNVGLGSAISVLIFVCAGLIAWVFIR 297
>gi|254823049|ref|ZP_05228050.1| SugA [Mycobacterium intracellulare ATCC 13950]
Length=312
Score = 459 bits (1182), Expect = 2e-127, Method: Compositional matrix adjust.
Identities = 247/293 (85%), Positives = 271/293 (93%), Gaps = 0/293 (0%)
Query 15 RTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHT 74
RT +R++E+RLA +LVAPAA+LM+ VTAYPIGYA+WLSLQRNNLA P+DTAFIGLGNY T
Sbjct 20 RTRNRLSEQRLALLLVAPAALLMLTVTAYPIGYAVWLSLQRNNLAVPDDTAFIGLGNYVT 79
Query 75 ILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVV 134
IL DRYWWTALAVTL IT VSVT+EFVLGL LALVMHRTL+GKG+VRTA+LIPYGIVTVV
Sbjct 80 ILTDRYWWTALAVTLGITVVSVTVEFVLGLTLALVMHRTLVGKGMVRTAILIPYGIVTVV 139
Query 135 ASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALV 194
ASYSWYYAWTPGTGYLANLLP+ SAPLT QIPSL IVV+AEVWKTTPFMSLLLLAGLALV
Sbjct 140 ASYSWYYAWTPGTGYLANLLPHGSAPLTSQIPSLAIVVVAEVWKTTPFMSLLLLAGLALV 199
Query 195 PEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTG 254
PE+LL+AAQVDGA WRRLT VILP+IKPA+VVALLFRTLDAFRIFDNIYVLT G+NNT
Sbjct 200 PEELLKAAQVDGAGPWRRLTGVILPIIKPAVVVALLFRTLDAFRIFDNIYVLTNGANNTD 259
Query 255 SVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR 307
SVSILGYDNLFKGFNVGLGSAISVLIF CV +IA +FIK+FGAAAPGG+ GR
Sbjct 260 SVSILGYDNLFKGFNVGLGSAISVLIFVCVGLIALLFIKVFGAAAPGGDVDGR 312
>gi|333989847|ref|YP_004522461.1| sugar-transport integral membrane protein ABC transporter SugA
[Mycobacterium sp. JDM601]
gi|333485815|gb|AEF35207.1| sugar-transport integral membrane protein ABC transporter SugA
[Mycobacterium sp. JDM601]
Length=293
Score = 459 bits (1181), Expect = 3e-127, Method: Compositional matrix adjust.
Identities = 237/290 (82%), Positives = 260/290 (90%), Gaps = 1/290 (0%)
Query 14 SRTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYH 73
SR R ++RRLA +L+APA +LM+AVTAYPIGYA+WLSL R NLATP+DTAF+GL NY
Sbjct 3 SRADER-SQRRLALLLIAPAVVLMLAVTAYPIGYAIWLSLLRYNLATPDDTAFVGLANYQ 61
Query 74 TILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTV 133
T L D YWWTA AVTL IT VSV IEFVLGLALALVMHR+L KG VRTAVL+PYGIVTV
Sbjct 62 TTLTDSYWWTAFAVTLGITVVSVAIEFVLGLALALVMHRSLFAKGTVRTAVLVPYGIVTV 121
Query 134 VASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLAL 193
A+YSWYYAWTPGTGYLANLLP SAPLTQQ+PSLGIV++AEVWKTTPFM+LLLLAGLAL
Sbjct 122 AAAYSWYYAWTPGTGYLANLLPAGSAPLTQQLPSLGIVILAEVWKTTPFMALLLLAGLAL 181
Query 194 VPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNT 253
VPEDLL+AAQVDGA AWRRL VILPM+KPAI+VALLFRTLDAFRIFDNIYVLT GSNNT
Sbjct 182 VPEDLLKAAQVDGAGAWRRLVSVILPMMKPAILVALLFRTLDAFRIFDNIYVLTNGSNNT 241
Query 254 GSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGE 303
GSVSILGYDNLFKGFNVGLGSAISVLIF CVA+IA +F+K+FGAAAPG E
Sbjct 242 GSVSILGYDNLFKGFNVGLGSAISVLIFVCVALIAVLFVKVFGAAAPGSE 291
>gi|126436571|ref|YP_001072262.1| binding-protein-dependent transport systems inner membrane component
[Mycobacterium sp. JLS]
gi|126236371|gb|ABN99771.1| carbohydrate ABC transporter membrane protein 1, CUT1 family
[Mycobacterium sp. JLS]
Length=308
Score = 458 bits (1178), Expect = 5e-127, Method: Compositional matrix adjust.
Identities = 230/287 (81%), Positives = 262/287 (92%), Gaps = 0/287 (0%)
Query 21 AERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILIDRY 80
++RRLAFML+APA +LM+AVTAYPIGYA+WLSLQR NLA P+DT F+GL NY T+L DRY
Sbjct 22 SDRRLAFMLIAPAVVLMLAVTAYPIGYAVWLSLQRYNLAEPSDTEFVGLSNYVTVLSDRY 81
Query 81 WWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYSWY 140
WWTA AVTLAIT VSV IEFVLG+ALALVMHRT+ GKG+VRTA+L+PYGIVTV ASYSWY
Sbjct 82 WWTAFAVTLAITVVSVAIEFVLGMALALVMHRTIFGKGVVRTAILVPYGIVTVAASYSWY 141
Query 141 YAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDLLR 200
YAWTPGTGYLANLLP SAPLT+Q+PSL IVV+AEVWKTTPFM+LLLL+GLALVP+DLL
Sbjct 142 YAWTPGTGYLANLLPEGSAPLTEQLPSLAIVVLAEVWKTTPFMALLLLSGLALVPQDLLN 201
Query 201 AAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSILG 260
AAQ+DGA W+RL KVILP+IKPAI+VALLFRTLDAFRIFDNIY+LTGG+NNTGSVSILG
Sbjct 202 AAQMDGAGPWKRLVKVILPLIKPAILVALLFRTLDAFRIFDNIYILTGGANNTGSVSILG 261
Query 261 YDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR 307
YDNLFK FN+GLGSA+SVLIF CVA+IAFI+IKLFGA+APG + R
Sbjct 262 YDNLFKAFNLGLGSALSVLIFLCVAIIAFIYIKLFGASAPGSDEERR 308
>gi|108800946|ref|YP_641143.1| binding-protein-dependent transport systems inner membrane component
[Mycobacterium sp. MCS]
gi|119870086|ref|YP_940038.1| binding-protein-dependent transport systems inner membrane component
[Mycobacterium sp. KMS]
gi|108771365|gb|ABG10087.1| carbohydrate ABC transporter membrane protein 1, CUT1 family
[Mycobacterium sp. MCS]
gi|119696175|gb|ABL93248.1| carbohydrate ABC transporter membrane protein 1, CUT1 family
[Mycobacterium sp. KMS]
Length=308
Score = 456 bits (1174), Expect = 1e-126, Method: Compositional matrix adjust.
Identities = 229/287 (80%), Positives = 262/287 (92%), Gaps = 0/287 (0%)
Query 21 AERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILIDRY 80
++RRLAFML+APA +LM+AVTAYPIGYA+WLSLQR NLA P+DT F+GL NY T+L D+Y
Sbjct 22 SDRRLAFMLIAPAVVLMLAVTAYPIGYAVWLSLQRYNLAEPSDTEFVGLSNYVTVLSDQY 81
Query 81 WWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYSWY 140
WWTA AVTLAIT VSV IEFVLG+ALALVMHRT+ GKG+VRTA+L+PYGIVTV ASYSWY
Sbjct 82 WWTAFAVTLAITVVSVAIEFVLGMALALVMHRTIFGKGVVRTAILVPYGIVTVAASYSWY 141
Query 141 YAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDLLR 200
YAWTPGTGYLANLLP SAPLT+Q+PSL IVV+AEVWKTTPFM+LLLL+GLALVP+DLL
Sbjct 142 YAWTPGTGYLANLLPEGSAPLTEQLPSLAIVVLAEVWKTTPFMALLLLSGLALVPQDLLN 201
Query 201 AAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSILG 260
AAQ+DGA W+RL KVILP+IKPAI+VALLFRTLDAFRIFDNIY+LTGG+NNTGSVSILG
Sbjct 202 AAQMDGAGPWKRLVKVILPLIKPAILVALLFRTLDAFRIFDNIYILTGGANNTGSVSILG 261
Query 261 YDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR 307
YDNLFK FN+GLGSA+SVLIF CVA+IAFI+IKLFGA+APG + R
Sbjct 262 YDNLFKAFNLGLGSALSVLIFLCVAIIAFIYIKLFGASAPGSDEERR 308
>gi|118471165|ref|YP_889310.1| ABC transporter permease [Mycobacterium smegmatis str. MC2 155]
gi|118172452|gb|ABK73348.1| ABC transporter, permease protein SugA [Mycobacterium smegmatis
str. MC2 155]
Length=305
Score = 455 bits (1171), Expect = 3e-126, Method: Compositional matrix adjust.
Identities = 240/307 (79%), Positives = 266/307 (87%), Gaps = 2/307 (0%)
Query 1 VTSVEQRTATAVFSRTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLAT 60
+T+ +A+AV S + +ERRLAF L+APA +LM+AVTAYPIGYA+WLSLQR NLA
Sbjct 1 MTAAVTPSASAVASD--DKKSERRLAFWLIAPAVLLMLAVTAYPIGYAVWLSLQRYNLAE 58
Query 61 PNDTAFIGLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLV 120
P+DT FIGL NY T+L D YWWTA AVTL IT VSV IEF LGLALALVMHRT+ GKG V
Sbjct 59 PHDTEFIGLANYVTVLTDGYWWTAFAVTLGITVVSVAIEFALGLALALVMHRTIFGKGAV 118
Query 121 RTAVLIPYGIVTVVASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTT 180
RTA+LIPYGIVTV ASYSWYYAWTPGTGYLANLLP SAPLT Q+PSL IVV+AEVWKTT
Sbjct 119 RTAILIPYGIVTVAASYSWYYAWTPGTGYLANLLPEGSAPLTDQLPSLAIVVLAEVWKTT 178
Query 181 PFMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIF 240
PFM+LLLLAGLALVP+DLL AAQVDGA W+RLTKVILPMIKPAI+VALLFRTLDAFRIF
Sbjct 179 PFMALLLLAGLALVPQDLLNAAQVDGAGPWKRLTKVILPMIKPAILVALLFRTLDAFRIF 238
Query 241 DNIYVLTGGSNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAP 300
DNIY+LTGGSN+TGSVSILGYDNLFK FNVGLGSAISVLIF VA+IAFI+IK+FGAAAP
Sbjct 239 DNIYILTGGSNDTGSVSILGYDNLFKAFNVGLGSAISVLIFLSVAIIAFIYIKIFGAAAP 298
Query 301 GGEPSGR 307
G + R
Sbjct 299 GSDEEVR 305
>gi|111022952|ref|YP_705924.1| sugar ABC transporter permease [Rhodococcus jostii RHA1]
gi|110822482|gb|ABG97766.1| ABC sugar transporter, permease component [Rhodococcus jostii
RHA1]
Length=315
Score = 434 bits (1117), Expect = 7e-120, Method: Compositional matrix adjust.
Identities = 221/289 (77%), Positives = 254/289 (88%), Gaps = 0/289 (0%)
Query 19 RMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILID 78
+ AERRL LVAPAA+LMVAVTAYP+ YA+WLSLQR +L P+D F+GL NY ++L D
Sbjct 26 KKAERRLGLWLVAPAAILMVAVTAYPVVYAVWLSLQRYDLRFPDDRKFVGLANYVSVLSD 85
Query 79 RYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYS 138
YWW A AVT+ IT VSV IEFVLGL LALVMHRTL+GKG+VRT VLIPYGIVTV A+YS
Sbjct 86 AYWWQAFAVTVGITVVSVVIEFVLGLILALVMHRTLVGKGIVRTVVLIPYGIVTVAAAYS 145
Query 139 WYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDL 198
WYYAWTPGTGYLANLLP SAPLTQQIPSL I+V+AEVWKTTPFM+LLLLAGLALVP+DL
Sbjct 146 WYYAWTPGTGYLANLLPDGSAPLTQQIPSLAIIVLAEVWKTTPFMALLLLAGLALVPDDL 205
Query 199 LRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSI 258
L+AAQVDGA AW RL ++ILP++KPAI+VALLFRTLDAFRIFDNIYVLT G+N+TGS+SI
Sbjct 206 LKAAQVDGAGAWTRLVRIILPLMKPAILVALLFRTLDAFRIFDNIYVLTKGANDTGSLSI 265
Query 259 LGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR 307
LGYDNLFK FN+G+GSAISVLIF CVA++AF+FIKLFGA+APG + G
Sbjct 266 LGYDNLFKAFNLGIGSAISVLIFLCVALLAFVFIKLFGASAPGSDTEGN 314
>gi|118619615|ref|YP_907947.1| sugar-transport integral membrane protein ABC transporter SugA
[Mycobacterium ulcerans Agy99]
gi|118571725|gb|ABL06476.1| sugar-transport integral membrane protein ABC transporter SugA
[Mycobacterium ulcerans Agy99]
Length=345
Score = 434 bits (1116), Expect = 9e-120, Method: Compositional matrix adjust.
Identities = 215/248 (87%), Positives = 230/248 (93%), Gaps = 0/248 (0%)
Query 25 LAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILIDRYWWTA 84
LAF LVAPA +LM+ V YPIGYA+WLSLQRNNLATPN+T FIGLGNY TIL+DRYWWTA
Sbjct 16 LAFALVAPATILMLLVIGYPIGYAMWLSLQRNNLATPNETRFIGLGNYQTILVDRYWWTA 75
Query 85 LAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYSWYYAWT 144
LAVT AIT VSV EFVLGLALALVMHR+L+ KGLVRTAVL+PYGIVTVVASYSWYYAWT
Sbjct 76 LAVTAAITVVSVACEFVLGLALALVMHRSLVAKGLVRTAVLVPYGIVTVVASYSWYYAWT 135
Query 145 PGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDLLRAAQV 204
PGTGYLANLLP APLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLA+VPEDLL+AAQV
Sbjct 136 PGTGYLANLLPQGIAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLAMVPEDLLQAAQV 195
Query 205 DGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSILGYDNL 264
DGA AWRRLTK+ILP+IKPA++VALLFRTLDAFRIFDNIYVLTGG N+T SVSILGYDNL
Sbjct 196 DGAGAWRRLTKIILPLIKPAVLVALLFRTLDAFRIFDNIYVLTGGDNDTASVSILGYDNL 255
Query 265 FKGFNVGL 272
FKGFNVGL
Sbjct 256 FKGFNVGL 263
>gi|226307633|ref|YP_002767593.1| ABC transporter permease protein [Rhodococcus erythropolis PR4]
gi|226186750|dbj|BAH34854.1| putative ABC transporter permease protein [Rhodococcus erythropolis
PR4]
Length=321
Score = 431 bits (1107), Expect = 9e-119, Method: Compositional matrix adjust.
Identities = 222/306 (73%), Positives = 256/306 (84%), Gaps = 0/306 (0%)
Query 2 TSVEQRTATAVFSRTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATP 61
T + +A + + AERRL LVAPAA+LM+AVTAYP+ YA+WLSLQR +L P
Sbjct 16 TPSPESKHSAKSKMSDGKAAERRLGLWLVAPAAILMIAVTAYPVVYAVWLSLQRYDLRFP 75
Query 62 NDTAFIGLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVR 121
+ F+ NY ++L D YWW A AVT +IT VSV IEFVLGL +ALVMHRT++GKGLVR
Sbjct 76 DQRKFVWFDNYVSVLTDGYWWQAFAVTTSITVVSVVIEFVLGLTIALVMHRTIVGKGLVR 135
Query 122 TAVLIPYGIVTVVASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTP 181
T VLIPYGIVTV A+YSWYYAWTPGTGYLANLLP SAPLT QIPSL I+V+AEVWKTTP
Sbjct 136 TVVLIPYGIVTVAAAYSWYYAWTPGTGYLANLLPDGSAPLTDQIPSLAIIVLAEVWKTTP 195
Query 182 FMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFD 241
FM+LLLLAGLALVP+DLL+AAQVDGA AW RL ++ILP++KPAI+VALLFRTLDAFRIFD
Sbjct 196 FMALLLLAGLALVPDDLLKAAQVDGAGAWTRLVRIILPLMKPAILVALLFRTLDAFRIFD 255
Query 242 NIYVLTGGSNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPG 301
NIYVLT G+N+TGSVSILGYDNLFK FN+G+GSAISVLIF CVAVIAFIFIKLFGA+APG
Sbjct 256 NIYVLTKGANDTGSVSILGYDNLFKAFNLGIGSAISVLIFVCVAVIAFIFIKLFGASAPG 315
Query 302 GEPSGR 307
+ GR
Sbjct 316 SDTEGR 321
>gi|229493745|ref|ZP_04387527.1| ABC sugar transporter, permease component [Rhodococcus erythropolis
SK121]
gi|229319345|gb|EEN85184.1| ABC sugar transporter, permease component [Rhodococcus erythropolis
SK121]
Length=321
Score = 430 bits (1105), Expect = 1e-118, Method: Compositional matrix adjust.
Identities = 222/306 (73%), Positives = 256/306 (84%), Gaps = 0/306 (0%)
Query 2 TSVEQRTATAVFSRTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATP 61
T + +A + + AERRL LVAPAA+LM+AVTAYP+ YA+WLSLQR +L P
Sbjct 16 TPSPEPKHSAKSKMSDGKAAERRLGLWLVAPAAILMIAVTAYPVVYAVWLSLQRYDLRFP 75
Query 62 NDTAFIGLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVR 121
+ F+ NY ++L D YWW A AVT +IT VSV IEFVLGL +ALVMHRT++GKGLVR
Sbjct 76 DQRKFVWFDNYVSVLTDGYWWQAFAVTTSITVVSVVIEFVLGLTIALVMHRTIVGKGLVR 135
Query 122 TAVLIPYGIVTVVASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTP 181
T VLIPYGIVTV A+YSWYYAWTPGTGYLANLLP SAPLT QIPSL I+V+AEVWKTTP
Sbjct 136 TVVLIPYGIVTVAAAYSWYYAWTPGTGYLANLLPDGSAPLTDQIPSLAIIVLAEVWKTTP 195
Query 182 FMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFD 241
FM+LLLLAGLALVP+DLL+AAQVDGA AW RL ++ILP++KPAI+VALLFRTLDAFRIFD
Sbjct 196 FMALLLLAGLALVPDDLLKAAQVDGAGAWTRLVRIILPLMKPAILVALLFRTLDAFRIFD 255
Query 242 NIYVLTGGSNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPG 301
NIYVLT G+N+TGSVSILGYDNLFK FN+G+GSAISVLIF CVAVIAFIFIKLFGA+APG
Sbjct 256 NIYVLTKGANDTGSVSILGYDNLFKAFNLGIGSAISVLIFVCVAVIAFIFIKLFGASAPG 315
Query 302 GEPSGR 307
+ GR
Sbjct 316 SDTEGR 321
>gi|296138927|ref|YP_003646170.1| binding-protein-dependent transporters inner membrane component
[Tsukamurella paurometabola DSM 20162]
gi|296027061|gb|ADG77831.1| binding-protein-dependent transport systems inner membrane component
[Tsukamurella paurometabola DSM 20162]
Length=310
Score = 414 bits (1065), Expect = 7e-114, Method: Compositional matrix adjust.
Identities = 212/306 (70%), Positives = 256/306 (84%), Gaps = 2/306 (0%)
Query 2 TSVEQRTATAVFSRTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATP 61
T+ +R A S G R AE+RL ML+APAA++M+AVTAYPI YA WLSLQ+++LA P
Sbjct 6 TATVERIEPAPASE-GQR-AEKRLGLMLIAPAAIVMLAVTAYPIIYAFWLSLQKSSLAAP 63
Query 62 NDTAFIGLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVR 121
F+GLGNY T+L D YWW AL +T IT VSV IEFVLG+A+ALVMHRT++GKG+VR
Sbjct 64 GQDEFVGLGNYATVLQDGYWWQALGMTTLITVVSVVIEFVLGMAIALVMHRTIVGKGVVR 123
Query 122 TAVLIPYGIVTVVASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTP 181
T VLIPYGIVTVVA++SW+YAWTP TGYLANLLP +APLT+Q PS+ ++++AEVWKTTP
Sbjct 124 TVVLIPYGIVTVVAAFSWFYAWTPDTGYLANLLPDGTAPLTEQRPSVAVIILAEVWKTTP 183
Query 182 FMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFD 241
FM+LLLL+GLALVP+DLL+AA +DGA W RLTK+I+P++KPAI+VALLFRTLDAFRIFD
Sbjct 184 FMALLLLSGLALVPDDLLKAAALDGAGPWTRLTKIIIPLMKPAILVALLFRTLDAFRIFD 243
Query 242 NIYVLTGGSNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPG 301
NIY+LT GSN TGSVSILGYDNLFK FN+G+GSAISVLIF CVA+IAFIF+K FG A PG
Sbjct 244 NIYILTNGSNGTGSVSILGYDNLFKAFNLGVGSAISVLIFICVAIIAFIFVKAFGTAVPG 303
Query 302 GEPSGR 307
+ R
Sbjct 304 ADSDDR 309
>gi|226365458|ref|YP_002783241.1| ABC transporter permease protein [Rhodococcus opacus B4]
gi|226243948|dbj|BAH54296.1| putative ABC transporter permease protein [Rhodococcus opacus
B4]
Length=315
Score = 413 bits (1061), Expect = 2e-113, Method: Compositional matrix adjust.
Identities = 219/288 (77%), Positives = 254/288 (89%), Gaps = 0/288 (0%)
Query 19 RMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILID 78
+ AERRL LVAPAA+LM+AVTAYP+ YA+WLSLQR +L P++ F+GL NY ++L D
Sbjct 26 KRAERRLGLWLVAPAAILMIAVTAYPVVYAVWLSLQRYDLRFPDERKFVGLANYVSVLTD 85
Query 79 RYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYS 138
YWW A VT++IT VSV IEFVLGL LALVMHRTL+GKGLVRT VLIPYGIVTV A+YS
Sbjct 86 GYWWQAFWVTVSITVVSVVIEFVLGLILALVMHRTLVGKGLVRTVVLIPYGIVTVAAAYS 145
Query 139 WYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDL 198
WYYAWTPGTGYLANLLP SAPLTQQIPSL I+V+AEVWKTTPFM+LLLLAGLALVP+DL
Sbjct 146 WYYAWTPGTGYLANLLPDGSAPLTQQIPSLAIIVLAEVWKTTPFMALLLLAGLALVPDDL 205
Query 199 LRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSI 258
L+AAQVDGA AW RL ++ILP++KPAI+VALLFRTLDAFRIFDNIYVLT G+N+TGS+SI
Sbjct 206 LKAAQVDGAGAWTRLVRIILPLMKPAILVALLFRTLDAFRIFDNIYVLTKGANDTGSLSI 265
Query 259 LGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSG 306
LGYDNLFK FN+G+GSAISVLIF CVA++AF+FIKLFGA+APG + G
Sbjct 266 LGYDNLFKAFNLGIGSAISVLIFLCVALLAFVFIKLFGASAPGSDTEG 313
>gi|326382046|ref|ZP_08203739.1| binding-protein-dependent transporter inner membrane component
[Gordonia neofelifaecis NRRL B-59395]
gi|326199472|gb|EGD56653.1| binding-protein-dependent transporter inner membrane component
[Gordonia neofelifaecis NRRL B-59395]
Length=433
Score = 409 bits (1050), Expect = 4e-112, Method: Compositional matrix adjust.
Identities = 210/292 (72%), Positives = 247/292 (85%), Gaps = 0/292 (0%)
Query 16 TGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTI 75
TG + +ER+LA+ L+APAA++M VT YPI YA WLSL + L P+D FI NY T+
Sbjct 142 TGRKSSERKLAYWLIAPAAIVMALVTGYPIVYAFWLSLNKATLTAPDDQQFIWFSNYATV 201
Query 76 LIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVA 135
L D YWW+AL VT+ IT VSV IE VLG+A+ALVMHRT+ G+G VRT VLIPYGIVTV A
Sbjct 202 LSDGYWWSALGVTVFITLVSVLIELVLGMAIALVMHRTIFGRGTVRTVVLIPYGIVTVAA 261
Query 136 SYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVP 195
++SWYYAWTPGTGYLANLLP SAPLTQQ PSL I+++AEVWKTTPFM+LLLLAGLALVP
Sbjct 262 AFSWYYAWTPGTGYLANLLPDGSAPLTQQWPSLFIIILAEVWKTTPFMALLLLAGLALVP 321
Query 196 EDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGS 255
+DLL+AAQ+DGA AW RL ++ILP++KPAI+VALLFRTLDAFRIFDNIYVLT GSN TGS
Sbjct 322 DDLLKAAQLDGAGAWTRLFRIILPLMKPAILVALLFRTLDAFRIFDNIYVLTAGSNGTGS 381
Query 256 VSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR 307
VS+LGYDNLFK FN+G+GSAIS+LIF CVA+IAF+FIK FGAAAPG + GR
Sbjct 382 VSMLGYDNLFKAFNLGVGSAISILIFVCVAIIAFVFIKGFGAAAPGSDDEGR 433
>gi|262201808|ref|YP_003273016.1| binding-protein-dependent transporter inner membrane component
[Gordonia bronchialis DSM 43247]
gi|262085155|gb|ACY21123.1| binding-protein-dependent transport systems inner membrane component
[Gordonia bronchialis DSM 43247]
Length=388
Score = 408 bits (1049), Expect = 5e-112, Method: Compositional matrix adjust.
Identities = 213/303 (71%), Positives = 252/303 (84%), Gaps = 1/303 (0%)
Query 6 QRTATAVFSR-TGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDT 64
+ + TA R + + AERRLAF LVAPAA++M+ VT YPI YA+WLSL + +L+ P +
Sbjct 86 EDSGTAKGGRVSDGKSAERRLAFWLVAPAAIMMLLVTGYPILYAVWLSLNKASLSAPGER 145
Query 65 AFIGLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAV 124
F+ GNY T+L D YWWTA +VTL IT VSV IE VLG+A+ALVMHRT+ GKG +RT V
Sbjct 146 EFVWFGNYITVLTDSYWWTAFSVTLGITIVSVIIELVLGMAIALVMHRTIFGKGTIRTVV 205
Query 125 LIPYGIVTVVASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMS 184
LIPYGIVTV A++SWYYAWTP TGYLANLLP SAPLT+Q PSL I+V+AEVWKTTPFM+
Sbjct 206 LIPYGIVTVAAAFSWYYAWTPDTGYLANLLPDGSAPLTEQWPSLAIIVLAEVWKTTPFMA 265
Query 185 LLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIY 244
LLLLAGLALVP+DLL+AAQVDGA AW RL ++I+P++KPAI+VALLFRTLDAFRIFDNIY
Sbjct 266 LLLLAGLALVPDDLLKAAQVDGAGAWTRLWRIIIPLMKPAILVALLFRTLDAFRIFDNIY 325
Query 245 VLTGGSNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEP 304
VLT G+NNT SVSILGYDNLF FN+G+GSAIS+LIF CVA+IAFIFIK FG AAPG +
Sbjct 326 VLTSGNNNTFSVSILGYDNLFGAFNLGVGSAISILIFLCVAIIAFIFIKGFGTAAPGTDD 385
Query 305 SGR 307
GR
Sbjct 386 EGR 388
>gi|343928020|ref|ZP_08767485.1| putative ABC transporter permease protein [Gordonia alkanivorans
NBRC 16433]
gi|343762028|dbj|GAA14411.1| putative ABC transporter permease protein [Gordonia alkanivorans
NBRC 16433]
Length=406
Score = 407 bits (1047), Expect = 8e-112, Method: Compositional matrix adjust.
Identities = 208/294 (71%), Positives = 247/294 (85%), Gaps = 0/294 (0%)
Query 14 SRTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYH 73
R+ + AERRLAF LVAPAA++M+ VT YPI YA+WLSL + +L+ P + F+ NY
Sbjct 113 KRSEGKTAERRLAFWLVAPAALMMLLVTGYPIIYAVWLSLNKMSLSAPGEREFVWFSNYA 172
Query 74 TILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTV 133
T+L D YWWTA VT+ IT VSV IE VLG+A+ALVMHRT+ G+G +RT VLIPYGIVTV
Sbjct 173 TVLTDNYWWTAFGVTVGITVVSVLIELVLGMAIALVMHRTIFGRGTIRTVVLIPYGIVTV 232
Query 134 VASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLAL 193
A++SWYYAWTPGTGYLANLLP SAPLT+Q PSL I+V+AEVWKTTPFM+LLLLAGLAL
Sbjct 233 AAAFSWYYAWTPGTGYLANLLPDGSAPLTEQWPSLAIIVLAEVWKTTPFMALLLLAGLAL 292
Query 194 VPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNT 253
VP+DLL+AAQVDGA AW RL ++ILP++KPAI+VALLFRTLDAFR+FDNIYVLT GSNNT
Sbjct 293 VPDDLLKAAQVDGAGAWTRLWRIILPLMKPAILVALLFRTLDAFRVFDNIYVLTSGSNNT 352
Query 254 GSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR 307
SVS+LGYDNLF FN+G+GSAIS+LIF CVA+IAF+FIK FG AAPG + GR
Sbjct 353 YSVSMLGYDNLFGAFNLGVGSAISILIFICVAIIAFVFIKGFGTAAPGSDDEGR 406
>gi|169628464|ref|YP_001702113.1| sugar ABC transporter permease SugA [Mycobacterium abscessus
ATCC 19977]
gi|169240431|emb|CAM61459.1| Probable sugar ABC transporter, permease protein SugA [Mycobacterium
abscessus]
Length=300
Score = 391 bits (1004), Expect = 9e-107, Method: Compositional matrix adjust.
Identities = 225/298 (76%), Positives = 257/298 (87%), Gaps = 4/298 (1%)
Query 14 SRTGS--RMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGN 71
RT S + AERRL +L+APAA+LM+AVTAYPI YA+WLS+Q+ + A+P D F+ N
Sbjct 3 DRTSSEGKRAERRLGLLLIAPAALLMLAVTAYPICYAIWLSVQKYSFASPQDRKFVWFDN 62
Query 72 YHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIV 131
Y T+L DRYWW+AL VTL IT +SV IE VLGLALALVMHRT+ G+G+VRTAVLIPYGIV
Sbjct 63 YITVLSDRYWWSALVVTLVITVISVLIELVLGLALALVMHRTIFGRGVVRTAVLIPYGIV 122
Query 132 TVVASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGL 191
TV ASYSWYYAWTPGTGYLANLLP SAPLTQQIPSL +V++AEVWKTTPFM+LLLLAGL
Sbjct 123 TVAASYSWYYAWTPGTGYLANLLPAGSAPLTQQIPSLAVVILAEVWKTTPFMALLLLAGL 182
Query 192 ALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSN 251
ALVP+DLL+AAQVDGA+ W RL +V +P++KPAI+VALLFRTLDAFRIFDNIYVLTGGSN
Sbjct 183 ALVPDDLLKAAQVDGANGWSRLIRVTVPIMKPAILVALLFRTLDAFRIFDNIYVLTGGSN 242
Query 252 NTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAP--GGEPSGR 307
NTGSVSILGYDNLFK FNVGLGSAISVLIF CVA+IA IFIK FGA+AP GE + R
Sbjct 243 NTGSVSILGYDNLFKAFNVGLGSAISVLIFLCVAIIAVIFIKGFGASAPTTDGEEARR 300
>gi|257054716|ref|YP_003132548.1| carbohydrate ABC transporter membrane protein [Saccharomonospora
viridis DSM 43017]
gi|256584588|gb|ACU95721.1| carbohydrate ABC transporter membrane protein [Saccharomonospora
viridis DSM 43017]
Length=321
Score = 389 bits (1000), Expect = 2e-106, Method: Compositional matrix adjust.
Identities = 196/289 (68%), Positives = 244/289 (85%), Gaps = 0/289 (0%)
Query 19 RMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILID 78
+ AERRL +LVAPAA++M+AVT YPI Y++WLSLQR +L P+D F+ NY +L +
Sbjct 32 KRAERRLGLLLVAPAAIVMLAVTGYPILYSVWLSLQRYDLRFPDDREFVWFANYAAVLTN 91
Query 79 RYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYS 138
YWWTA VT+ IT VSV IEFVLG+ALAL+MHRTL+G+GLVRT LIPYGIVTVVA++S
Sbjct 92 SYWWTAFGVTMLITVVSVAIEFVLGMALALIMHRTLVGRGLVRTVTLIPYGIVTVVAAFS 151
Query 139 WYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDL 198
W+YAWTPGTGYLAN L SAPLT+Q SL I+++AEVWKTTPFM+LLL+AGLALVPEDL
Sbjct 152 WFYAWTPGTGYLANALTPGSAPLTEQGSSLAIIILAEVWKTTPFMALLLMAGLALVPEDL 211
Query 199 LRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSI 258
L+AA +DGA+AW+R TKV+LP++KPAI+VALLFRTLDAFR+FDNI+VLTGG+N+T SVS+
Sbjct 212 LKAASMDGANAWQRFTKVMLPVMKPAILVALLFRTLDAFRVFDNIFVLTGGANDTSSVSM 271
Query 259 LGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR 307
Y+NL KG N+G+GS ++VLIF VA+IAFIFIK+FG AAPG + G+
Sbjct 272 QTYNNLMKGLNLGIGSTMAVLIFIAVAIIAFIFIKVFGTAAPGSDQEGK 320
>gi|331694915|ref|YP_004331154.1| ABC transporter integral membrane subunit [Pseudonocardia dioxanivorans
CB1190]
gi|326949604|gb|AEA23301.1| ABC-type transporter, integral membrane subunit [Pseudonocardia
dioxanivorans CB1190]
Length=319
Score = 388 bits (996), Expect = 8e-106, Method: Compositional matrix adjust.
Identities = 203/289 (71%), Positives = 243/289 (85%), Gaps = 0/289 (0%)
Query 19 RMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILID 78
+ AERRL L APAA++MVAVTAYPI YA+WLSLQR +L P + F GL NY +L
Sbjct 30 KKAERRLGLWLCAPAAIIMVAVTAYPIIYAIWLSLQRYDLRFPAEREFAGLSNYGAVLTS 89
Query 79 RYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYS 138
YWW A +T+ IT VSV IEFVLGLALALVMHRT++G+GL RT VLIPYGIVTVVA++S
Sbjct 90 AYWWQAFLITVIITVVSVAIEFVLGLALALVMHRTIVGRGLTRTVVLIPYGIVTVVAAFS 149
Query 139 WYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDL 198
W +AWTP GYLA +L SAPLT Q ++ I+++AEVWKTTPFM+LLL+AGLALVP+DL
Sbjct 150 WQFAWTPDKGYLAAMLSEGSAPLTGQASAIAIIILAEVWKTTPFMALLLMAGLALVPDDL 209
Query 199 LRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSI 258
L+AAQVDGA AW+RLT++ILPM+KPAI+VALLFRTLDAFR+FDNIY+LT GSN TGSVS+
Sbjct 210 LKAAQVDGAGAWQRLTQIILPMMKPAILVALLFRTLDAFRVFDNIYILTQGSNGTGSVSM 269
Query 259 LGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR 307
LGYDNLFK FN+G+GSAISVLIF VA+IA +FIK+FGAAAPG EP+G+
Sbjct 270 LGYDNLFKAFNLGIGSAISVLIFVAVALIALLFIKIFGAAAPGSEPTGK 318
>gi|317508230|ref|ZP_07965910.1| inner membrane transporter [Segniliparus rugosus ATCC BAA-974]
gi|316253405|gb|EFV12795.1| inner membrane transporter [Segniliparus rugosus ATCC BAA-974]
Length=287
Score = 387 bits (994), Expect = 1e-105, Method: Compositional matrix adjust.
Identities = 190/284 (67%), Positives = 232/284 (82%), Gaps = 0/284 (0%)
Query 20 MAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILIDR 79
M R + LVAPA LM+ V AYP+ +ALWLS QR + P D AF+GL NY +L D+
Sbjct 1 MTSTRRGWFLVAPALALMLLVGAYPVAHALWLSTQRYRFSQPGDRAFVGLANYQAVLADQ 60
Query 80 YWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYSW 139
YWW AL VT IT VSV +EFVLGLALAL+MHRTL+GK LVRT VLIPYG+VTVV++YSW
Sbjct 61 YWWHALWVTALITVVSVALEFVLGLALALLMHRTLVGKSLVRTLVLIPYGLVTVVSAYSW 120
Query 140 YYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDLL 199
YAWTPGTGYLANLLP SAPLTQQ ++ +V++AEVWKT+PFMSLLLL GLA VP+D++
Sbjct 121 LYAWTPGTGYLANLLPQGSAPLTQQASAIAVVILAEVWKTSPFMSLLLLTGLAQVPQDMM 180
Query 200 RAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSIL 259
AAQ+DGA A RL +VILP ++PAI+VALLFRT+DAFR+FD+IYV+T G++ TGSVS+L
Sbjct 181 DAAQMDGAGAATRLFRVILPAMRPAIMVALLFRTVDAFRVFDSIYVMTKGASGTGSVSLL 240
Query 260 GYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGE 303
GYDNLF FN+G+GSAISVL+F CVA+I +F+K+FGAAAPG E
Sbjct 241 GYDNLFLAFNLGVGSAISVLVFVCVALIVAVFMKVFGAAAPGME 284
>gi|213966432|ref|ZP_03394609.1| ABC sugar transporter, permease component [Corynebacterium amycolatum
SK46]
gi|213950925|gb|EEB62330.1| ABC sugar transporter, permease component [Corynebacterium amycolatum
SK46]
Length=305
Score = 385 bits (988), Expect = 6e-105, Method: Compositional matrix adjust.
Identities = 195/285 (69%), Positives = 239/285 (84%), Gaps = 0/285 (0%)
Query 16 TGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTI 75
+ R AERRL +LVAPA +LM+AVTAYPIGYA+WLSLQR +L P+D FIGL NY ++
Sbjct 13 SDGRRAERRLGLLLVAPALILMLAVTAYPIGYAIWLSLQRYDLRFPDDREFIGLQNYASV 72
Query 76 LIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVA 135
L YWW AL VT IT VSV +E VLG+A+A+VM+R + G+GL+RT VLIPYGIVTV A
Sbjct 73 LTSSYWWEALGVTAFITLVSVAVELVLGMAIAMVMYRAIFGRGLIRTVVLIPYGIVTVAA 132
Query 136 SYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVP 195
+YSW YAWTPGTGYLANLLP +APLT+Q PS+ I++ AE+WKTTPFM+LLLLAGLALVP
Sbjct 133 AYSWNYAWTPGTGYLANLLPDGTAPLTEQWPSIFIIIGAEIWKTTPFMALLLLAGLALVP 192
Query 196 EDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGS 255
+D L+AA++DGA W+R K+ LP++KP+IVVALLFRTLDAFR+FDNIY+LT G+N TGS
Sbjct 193 DDALKAAELDGAGFWQRFFKITLPLMKPSIVVALLFRTLDAFRVFDNIYILTKGNNGTGS 252
Query 256 VSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAP 300
VSILGY+NLFK FN+G+GSAISVLIF CVA+IA +F+K FGA +P
Sbjct 253 VSILGYNNLFKAFNLGIGSAISVLIFVCVALIAIVFVKGFGATSP 297
>gi|300783009|ref|YP_003763300.1| sugar ABC transporter permease [Amycolatopsis mediterranei U32]
gi|299792523|gb|ADJ42898.1| permease component of ABC-type sugar transport system [Amycolatopsis
mediterranei U32]
gi|340524386|gb|AEK39591.1| sugar ABC transporter permease [Amycolatopsis mediterranei S699]
Length=323
Score = 382 bits (982), Expect = 3e-104, Method: Compositional matrix adjust.
Identities = 195/289 (68%), Positives = 237/289 (83%), Gaps = 0/289 (0%)
Query 19 RMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILID 78
+ AERRL L APA ++M+AVT YPI Y++WLSLQR +L P F+G NY +L
Sbjct 34 KKAERRLGLWLCAPAFIVMIAVTGYPILYSVWLSLQRYDLRFPAQQQFVGFDNYAAVLSS 93
Query 79 RYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYS 138
YWWTA T+ +T VSV IEFVLG+ALAL+MHRTL+G+GLVRT LIPYGIVTVVA++S
Sbjct 94 SYWWTAFGTTMLLTVVSVAIEFVLGMALALIMHRTLVGRGLVRTVALIPYGIVTVVAAFS 153
Query 139 WYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDL 198
WYYAWTP TGYLAN L D+APLT+Q PSL I++ AEVWKTTPFM+LLL+AGLALVP+DL
Sbjct 154 WYYAWTPKTGYLANFLAADAAPLTEQWPSLFIIIGAEVWKTTPFMALLLMAGLALVPDDL 213
Query 199 LRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSI 258
L+AA +DGASAW+R TKV+LP++KPAI+VALLFRTLDAFRIFDNIYVLT G+ +TGSVS+
Sbjct 214 LKAAAMDGASAWQRFTKVMLPVMKPAILVALLFRTLDAFRIFDNIYVLTNGAQDTGSVSM 273
Query 259 LGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR 307
YDNL KG N+G+GS ++VLIF VA+IAFIFIK+FG AAPG + G+
Sbjct 274 QTYDNLVKGLNLGIGSTMAVLIFITVAIIAFIFIKVFGTAAPGSDNGGK 322
>gi|238060005|ref|ZP_04604714.1| ABC sugar transporter permease component [Micromonospora sp.
ATCC 39149]
gi|237881816|gb|EEP70644.1| ABC sugar transporter permease component [Micromonospora sp.
ATCC 39149]
Length=319
Score = 380 bits (975), Expect = 2e-103, Method: Compositional matrix adjust.
Identities = 191/290 (66%), Positives = 240/290 (83%), Gaps = 1/290 (0%)
Query 18 SRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILI 77
++ AER+L ++L APAA++MV VTAYPIGY++WLSLQR +L P+ FIGL NY T+L
Sbjct 30 NKRAERKLGWLLCAPAALVMVLVTAYPIGYSIWLSLQRYDLRFPDQREFIGLENYVTVLT 89
Query 78 DRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASY 137
+ +WWTA VT+ IT V+V +E LG+ LAL+MHRTL+G+G+VRTA LIPYGIVTVVA++
Sbjct 90 NEFWWTAFGVTMLITVVTVAVELALGMGLALIMHRTLVGRGIVRTAALIPYGIVTVVAAF 149
Query 138 SWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPED 197
SW YAWTPGTGYLANL D APLT++ SL IV++AE+WKTTPFM+LLL+AGLALVPED
Sbjct 150 SWRYAWTPGTGYLANLFS-DGAPLTERASSLAIVMLAEIWKTTPFMALLLMAGLALVPED 208
Query 198 LLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVS 257
LL+AA DGA+AW+R T+V+LP++KPAI+VALLFRTLDAFR+FDNIYVLT G N T SVS
Sbjct 209 LLKAASTDGATAWQRFTRVMLPVMKPAILVALLFRTLDAFRVFDNIYVLTAGGNETSSVS 268
Query 258 ILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR 307
+L Y+NL +G N+G+GS +SVLIF VA IAF+F+KLFG AAPG + R
Sbjct 269 MLAYNNLIRGLNLGIGSTMSVLIFLTVAAIAFVFVKLFGTAAPGSDDGER 318
>gi|296394485|ref|YP_003659369.1| binding-protein-dependent transporter inner membrane component
[Segniliparus rotundus DSM 44985]
gi|296181632|gb|ADG98538.1| binding-protein-dependent transport systems inner membrane component
[Segniliparus rotundus DSM 44985]
Length=287
Score = 379 bits (974), Expect = 2e-103, Method: Compositional matrix adjust.
Identities = 186/284 (66%), Positives = 226/284 (80%), Gaps = 0/284 (0%)
Query 20 MAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILIDR 79
M R + LVAPA +L++ V AYP+ +ALWLS QR + P D AF+G NY +L D+
Sbjct 1 MTSTRRGWFLVAPACVLLMCVGAYPVAHALWLSTQRYRFSQPGDRAFVGFANYEAVLSDQ 60
Query 80 YWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYSW 139
YWW AL VT+ IT VSV EFVLGLALAL+MHRTL+GK LVRT VLIPYG+VTVV++YSW
Sbjct 61 YWWRALWVTVLITVVSVAFEFVLGLALALLMHRTLVGKSLVRTLVLIPYGMVTVVSAYSW 120
Query 140 YYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDLL 199
YAWTPGTGYLANLLP SAPLTQQ S+ +++AEVWKT+PFMSLLLL GLA VP+D+
Sbjct 121 LYAWTPGTGYLANLLPQGSAPLTQQGTSIAAIILAEVWKTSPFMSLLLLTGLAQVPQDMT 180
Query 200 RAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSIL 259
AAQ+DGA A RL +V+LP +KPAI+VALLFR +DAFR+FDNIYV+T G+ TGSVS+L
Sbjct 181 DAAQMDGAGALTRLFRVVLPAMKPAIMVALLFRAVDAFRVFDNIYVMTKGAAGTGSVSLL 240
Query 260 GYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGE 303
GYDNLF FN G GSAISVL+F CVA+I +F+++FGA+APG E
Sbjct 241 GYDNLFLAFNFGTGSAISVLVFVCVALIVAVFMRIFGASAPGLE 284
>gi|291435775|ref|ZP_06575165.1| ABC sugar transporter [Streptomyces ghanaensis ATCC 14672]
gi|291338670|gb|EFE65626.1| ABC sugar transporter [Streptomyces ghanaensis ATCC 14672]
Length=319
Score = 379 bits (974), Expect = 3e-103, Method: Compositional matrix adjust.
Identities = 200/287 (70%), Positives = 237/287 (83%), Gaps = 1/287 (0%)
Query 17 GSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTIL 76
G+R ERRL ++L APA ++MVAVTAYPIGYA++LSLQR +L P F+GL NY +L
Sbjct 31 GARQ-ERRLGWLLCAPAVLVMVAVTAYPIGYAVYLSLQRYDLRFPARAEFVGLSNYGAVL 89
Query 77 IDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVAS 136
YWW A VTL +T VSV IE VLG+ LALVMHRTL +G VRTAVLIPYGIVTVVA+
Sbjct 90 SSPYWWDAFWVTLFLTVVSVAIELVLGMGLALVMHRTLFWRGTVRTAVLIPYGIVTVVAA 149
Query 137 YSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPE 196
+SW YAWTP GYLA LLP APLT+Q P+L ++V+AEVWKTTPFM+LLLLAGLALVPE
Sbjct 150 FSWQYAWTPELGYLAELLPSGEAPLTEQWPALWLIVLAEVWKTTPFMALLLLAGLALVPE 209
Query 197 DLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSV 256
+ L+AA VDGA+AW+R TKV+LP++KPAI+VALLFRTLDAFRIFDNIYVLT G++ TGS+
Sbjct 210 ETLKAAMVDGATAWQRFTKVVLPLMKPAILVALLFRTLDAFRIFDNIYVLTAGAHGTGSL 269
Query 257 SILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGE 303
SILGY+NLF N+G+GSAISVLIF CV +IAF F+KLFGAAAPG E
Sbjct 270 SILGYNNLFTALNLGIGSAISVLIFLCVGIIAFTFVKLFGAAAPGAE 316
>gi|330468991|ref|YP_004406734.1| binding-protein-dependent transport systems inner membrane component
[Verrucosispora maris AB-18-032]
gi|328811962|gb|AEB46134.1| binding-protein-dependent transport systems inner membrane component
[Verrucosispora maris AB-18-032]
Length=333
Score = 379 bits (973), Expect = 3e-103, Method: Compositional matrix adjust.
Identities = 189/290 (66%), Positives = 242/290 (84%), Gaps = 1/290 (0%)
Query 18 SRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILI 77
++ AERRL +L APAA++M+AVTAYPI Y++WLSLQR +L P + F+GL NY T+L
Sbjct 44 NKRAERRLGLLLCAPAALVMLAVTAYPILYSVWLSLQRYDLRFPAEREFVGLQNYVTVLT 103
Query 78 DRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASY 137
+ +WWTA VT+ IT V+V +E VLG+ LAL+MHRTL+G+G+VRT+ LIPYGIVTVVA++
Sbjct 104 NEFWWTAFGVTMLITVVTVAVELVLGMGLALIMHRTLVGRGIVRTSALIPYGIVTVVAAF 163
Query 138 SWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPED 197
SW YAWTPGTGYLANL D APLT++ SL I+++AE+WKTTPFM+LLL+AGLALVPED
Sbjct 164 SWRYAWTPGTGYLANLFS-DGAPLTERASSLAIIMLAEIWKTTPFMALLLMAGLALVPED 222
Query 198 LLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVS 257
LL+AA DGA+AW+R TKV+LP++KPAI+VALLFRTLDAFR+FDNIYVLT G+N T SVS
Sbjct 223 LLKAASTDGATAWQRFTKVMLPVMKPAILVALLFRTLDAFRVFDNIYVLTSGANETSSVS 282
Query 258 ILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR 307
++ Y+NL +G N+G+GS +SVLIF VA+IAF+F+KLFG AAPG + R
Sbjct 283 MIAYNNLIRGLNLGIGSTMSVLIFITVAIIAFVFVKLFGTAAPGSDDGER 332
>gi|302562112|ref|ZP_07314454.1| sugar ABC transporter, permease [Streptomyces griseoflavus Tu4000]
gi|302479730|gb|EFL42823.1| sugar ABC transporter, permease [Streptomyces griseoflavus Tu4000]
Length=309
Score = 379 bits (973), Expect = 3e-103, Method: Compositional matrix adjust.
Identities = 197/299 (66%), Positives = 241/299 (81%), Gaps = 1/299 (0%)
Query 5 EQRTATAVFSRTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDT 64
+ RT G+R ERRL ++L APA ++M AVTAYPIGYA++LSLQR +L P+
Sbjct 9 KDRTKGGRTPSAGARQ-ERRLGWLLCAPAVLVMTAVTAYPIGYAVYLSLQRYDLRFPDRA 67
Query 65 AFIGLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAV 124
F+GL NY ++L +WW A VT+ +TAVSV +E VLG+ LALVMHRTL +G VRTAV
Sbjct 68 EFVGLSNYGSVLSSPFWWDAFWVTVFLTAVSVAVELVLGMGLALVMHRTLFSRGTVRTAV 127
Query 125 LIPYGIVTVVASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMS 184
LIPYGIVTVVA++SW YAWTP GYLA LLP APLT+Q P+L ++V+AEVWKTTPFM+
Sbjct 128 LIPYGIVTVVAAFSWQYAWTPELGYLAELLPSGDAPLTEQWPALWLIVLAEVWKTTPFMA 187
Query 185 LLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIY 244
LLLLAGLALVPE+ L+AA VDGA++W+R +V+LP++KPAI+VALLFRTLDAFRIFDNIY
Sbjct 188 LLLLAGLALVPEETLKAAMVDGATSWQRFLRVMLPLMKPAILVALLFRTLDAFRIFDNIY 247
Query 245 VLTGGSNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGE 303
VLT G++ TGS+SILGYDNLF N+G+GSAISVLIF CV +IAF F+KLFGAAAPG E
Sbjct 248 VLTSGAHGTGSLSILGYDNLFTALNLGIGSAISVLIFLCVGIIAFTFVKLFGAAAPGAE 306
>gi|302868630|ref|YP_003837267.1| binding-protein-dependent transport systems inner membrane component
[Micromonospora aurantiaca ATCC 27029]
gi|315504898|ref|YP_004083785.1| binding-protein-dependent transport systems inner membrane component
[Micromonospora sp. L5]
gi|302571489|gb|ADL47691.1| binding-protein-dependent transport systems inner membrane component
[Micromonospora aurantiaca ATCC 27029]
gi|315411517|gb|ADU09634.1| binding-protein-dependent transport systems inner membrane component
[Micromonospora sp. L5]
Length=333
Score = 377 bits (969), Expect = 9e-103, Method: Compositional matrix adjust.
Identities = 198/310 (64%), Positives = 246/310 (80%), Gaps = 14/310 (4%)
Query 5 EQRTATAVFSRTGSR-------MAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNN 57
EQR SR GSR AERRL +L APAA++MV VTAYPI Y++WLSLQR +
Sbjct 30 EQR------SRRGSRAPLSDNKRAERRLGLLLCAPAALVMVLVTAYPILYSVWLSLQRFD 83
Query 58 LATPNDTAFIGLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGK 117
L P++ F+GL NY T+L + +WWTA VT IT V+V +E VLG+ LAL+MHRTL+G+
Sbjct 84 LRFPDEREFVGLENYVTVLTNDFWWTAFGVTALITVVTVAVELVLGMGLALIMHRTLVGR 143
Query 118 GLVRTAVLIPYGIVTVVASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVW 177
G+VRTA LIPYGIVTVVA++SW YAWTPGTGYLANL SAPLT++ SL I+++AE+W
Sbjct 144 GIVRTAALIPYGIVTVVAAFSWRYAWTPGTGYLANLFD-GSAPLTERASSLAIIMLAEIW 202
Query 178 KTTPFMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAF 237
KTTPFM+LLL+AGLALVPEDLL+AA DGA+AW+R TKV+LP++KPAI+VALLFRTLDAF
Sbjct 203 KTTPFMALLLMAGLALVPEDLLKAASTDGATAWQRFTKVMLPVMKPAILVALLFRTLDAF 262
Query 238 RIFDNIYVLTGGSNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGA 297
R+FDNI+VLT G N T SVS+L Y+NL +G N+G+GS +SVLIF VA+IAF+F+KLFG
Sbjct 263 RVFDNIFVLTNGGNETSSVSMLAYNNLIRGLNLGIGSTMSVLIFITVAIIAFVFVKLFGT 322
Query 298 AAPGGEPSGR 307
AAPG + R
Sbjct 323 AAPGSDDGER 332
>gi|291008814|ref|ZP_06566787.1| ABC sugar transporter, permease component [Saccharopolyspora
erythraea NRRL 2338]
Length=313
Score = 376 bits (965), Expect = 3e-102, Method: Compositional matrix adjust.
Identities = 193/289 (67%), Positives = 238/289 (83%), Gaps = 0/289 (0%)
Query 19 RMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILID 78
+ AERRL ++L APAA++MVAVT +PI YA+WLS QR +L P+ F+GL NY T+L +
Sbjct 24 KKAERRLGWLLCAPAALVMVAVTGWPILYAVWLSFQRFDLKYPDQREFVGLENYVTVLTN 83
Query 79 RYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYS 138
YWWTA VTL IT VSV IEFVLG+ LAL+MHR L+G+GLVRT LIPYGIVTVVA++S
Sbjct 84 GYWWTAFWVTLLITVVSVAIEFVLGMGLALIMHRALVGRGLVRTVSLIPYGIVTVVAAFS 143
Query 139 WYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDL 198
W YAWTP TGYLANL +SAPLT + SL I+++AE+WKTTPFM+LLL+AGLALVP+DL
Sbjct 144 WRYAWTPDTGYLANLFAPESAPLTDRAGSLAIIILAEIWKTTPFMALLLMAGLALVPDDL 203
Query 199 LRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSI 258
L+AA +DGA W+R KV+LP++KPAI+VALLFRTLDAFR+FDNI VLT GS +T SVS+
Sbjct 204 LKAAAMDGAGPWQRFVKVMLPVMKPAILVALLFRTLDAFRVFDNIVVLTSGSQDTSSVSV 263
Query 259 LGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR 307
L Y+NL KG N+G+GS +SVLIF VA+IAF+F+KLFGAAAPGG+ GR
Sbjct 264 LAYNNLIKGLNLGIGSTMSVLIFIAVALIAFLFVKLFGAAAPGGDDKGR 312
>gi|134097642|ref|YP_001103303.1| ABC sugar transporter, permease component [Saccharopolyspora
erythraea NRRL 2338]
gi|133910265|emb|CAM00378.1| ABC sugar transporter, permease component [Saccharopolyspora
erythraea NRRL 2338]
Length=312
Score = 375 bits (964), Expect = 4e-102, Method: Compositional matrix adjust.
Identities = 193/289 (67%), Positives = 238/289 (83%), Gaps = 0/289 (0%)
Query 19 RMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILID 78
+ AERRL ++L APAA++MVAVT +PI YA+WLS QR +L P+ F+GL NY T+L +
Sbjct 23 KKAERRLGWLLCAPAALVMVAVTGWPILYAVWLSFQRFDLKYPDQREFVGLENYVTVLTN 82
Query 79 RYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYS 138
YWWTA VTL IT VSV IEFVLG+ LAL+MHR L+G+GLVRT LIPYGIVTVVA++S
Sbjct 83 GYWWTAFWVTLLITVVSVAIEFVLGMGLALIMHRALVGRGLVRTVSLIPYGIVTVVAAFS 142
Query 139 WYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDL 198
W YAWTP TGYLANL +SAPLT + SL I+++AE+WKTTPFM+LLL+AGLALVP+DL
Sbjct 143 WRYAWTPDTGYLANLFAPESAPLTDRAGSLAIIILAEIWKTTPFMALLLMAGLALVPDDL 202
Query 199 LRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSI 258
L+AA +DGA W+R KV+LP++KPAI+VALLFRTLDAFR+FDNI VLT GS +T SVS+
Sbjct 203 LKAAAMDGAGPWQRFVKVMLPVMKPAILVALLFRTLDAFRVFDNIVVLTSGSQDTSSVSV 262
Query 259 LGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR 307
L Y+NL KG N+G+GS +SVLIF VA+IAF+F+KLFGAAAPGG+ GR
Sbjct 263 LAYNNLIKGLNLGIGSTMSVLIFIAVALIAFLFVKLFGAAAPGGDDKGR 311
>gi|302524364|ref|ZP_07276706.1| ABC sugar transporter [Streptomyces sp. AA4]
gi|302433259|gb|EFL05075.1| ABC sugar transporter [Streptomyces sp. AA4]
Length=315
Score = 373 bits (957), Expect = 2e-101, Method: Compositional matrix adjust.
Identities = 191/289 (67%), Positives = 236/289 (82%), Gaps = 0/289 (0%)
Query 19 RMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILID 78
+ AERRL L APA ++M+AVT YPI Y++WLSLQR +L P FIG NY +L +
Sbjct 26 KKAERRLGLWLCAPAFVVMIAVTGYPIIYSVWLSLQRYDLRFPAKHEFIGFDNYAAVLTN 85
Query 79 RYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYS 138
YWWTA T+ +T VSV IEFVLG+ LAL+MHRTL+G+GLVRT LIPYGIVTVVA++S
Sbjct 86 SYWWTAFGTTMFLTVVSVAIEFVLGMGLALIMHRTLVGRGLVRTVALIPYGIVTVVAAFS 145
Query 139 WYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDL 198
WY+AWTP TGYLA+ L APLT Q PSL I+++AEVWKTTPFM+LLL+AGLALVP+DL
Sbjct 146 WYFAWTPKTGYLASALGEGVAPLTDQWPSLFIIILAEVWKTTPFMALLLMAGLALVPDDL 205
Query 199 LRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSI 258
L+AA +DGA+AW+R TKV+LP++KPAI+VALLFRTLDAFRIFDNIYVLTGG+ +TGSVS+
Sbjct 206 LKAAAMDGATAWQRFTKVMLPVMKPAILVALLFRTLDAFRIFDNIYVLTGGAQDTGSVSM 265
Query 259 LGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR 307
YDNL KG N+G+GS ++VLIF VA+IAF+FIK+FG AAPG + G+
Sbjct 266 QTYDNLVKGLNLGIGSTMAVLIFITVAIIAFLFIKVFGTAAPGTDDGGK 314
>gi|312197858|ref|YP_004017919.1| sugar ABC transporter permease [Frankia sp. EuI1c]
gi|311229194|gb|ADP82049.1| binding-protein-dependent transport systems inner membrane component
[Frankia sp. EuI1c]
Length=343
Score = 364 bits (934), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 192/287 (67%), Positives = 241/287 (84%), Gaps = 2/287 (0%)
Query 17 GSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTIL 76
G+R AERRL + L APA ++++AVT YP+GYA++LSL R +L P D+ FIGL NY T+L
Sbjct 56 GAR-AERRLGWALCAPAFLVILAVTGYPVGYAVYLSLHRYDLRFPQDSRFIGLANYGTVL 114
Query 77 IDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVAS 136
WW ALAVT IT ++V I+FVLG+ALALVMHR LIG+GLVRT +LIPYGIVTVVA+
Sbjct 115 GSSLWWQALAVTAIITVIAVAIQFVLGMALALVMHRALIGRGLVRTVILIPYGIVTVVAA 174
Query 137 YSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPE 196
+ W YAWTP TGYL+ L DSAPLT Q+ +G++++AEVWKTTPFM+LLLLAGLALVPE
Sbjct 175 FGWRYAWTPDTGYLSGLF-GDSAPLTSQVWGIGVIILAEVWKTTPFMALLLLAGLALVPE 233
Query 197 DLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSV 256
+LLRAA+VDGA+AW+RLT+V+LP++KPAI+VA+LFR LD+FRIFD+IYVLT G+ +T SV
Sbjct 234 ELLRAAKVDGATAWQRLTRVMLPLMKPAILVAVLFRVLDSFRIFDSIYVLTAGAYDTRSV 293
Query 257 SILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGE 303
SILGYDNLF N+G+GS++SVLIF VA++AF+FIK FGAAAPG E
Sbjct 294 SILGYDNLFTALNLGVGSSLSVLIFLVVALVAFVFIKGFGAAAPGTE 340
>gi|256374955|ref|YP_003098615.1| ABC transporter inner membrane protein [Actinosynnema mirum DSM
43827]
gi|255919258|gb|ACU34769.1| binding-protein-dependent transport systems inner membrane component
[Actinosynnema mirum DSM 43827]
Length=318
Score = 362 bits (928), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 192/302 (64%), Positives = 237/302 (79%), Gaps = 3/302 (0%)
Query 6 QRTATAVFSRTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTA 65
+ A A S G R AERRL +L PA ++M V YPI Y+ WLSLQR +L P+
Sbjct 19 DKKAKAALSE-GKR-AERRLGLLLCLPAILIMALVAGYPILYSFWLSLQRYDLKFPDRQE 76
Query 66 FIGLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVL 125
F+ NY T+L YWW AL +TL IT VSV +EFVLG+ALAL+MHRTL+GKG+VRTA L
Sbjct 77 FVWFENYATVLSSPYWWDALWITLIITFVSVVLEFVLGMALALIMHRTLVGKGIVRTASL 136
Query 126 IPYGIVTVVASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSL 185
IPYGIVTVVA++SW YAWTPGTGYLA L D LT+++P++ IV++AEVWKTTPFM+L
Sbjct 137 IPYGIVTVVAAFSWRYAWTPGTGYLAELAGGDPV-LTEKVPAIMIVILAEVWKTTPFMAL 195
Query 186 LLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYV 245
LL+AGLALVPEDLL+AA VDGAS W+R KV++P++KPAI+VALLFRTLDAFRIFDN++V
Sbjct 196 LLMAGLALVPEDLLKAAAVDGASPWQRFVKVMIPVMKPAILVALLFRTLDAFRIFDNLFV 255
Query 246 LTGGSNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPS 305
LT GS T SVS++ Y+NL KG N+G+GS +SVLIF VA+IAFIF+KLFG AAPG + +
Sbjct 256 LTAGSQGTSSVSMVSYNNLIKGLNLGIGSTMSVLIFVAVAIIAFIFVKLFGTAAPGSDNT 315
Query 306 GR 307
GR
Sbjct 316 GR 317
>gi|288917512|ref|ZP_06411877.1| binding-protein-dependent transport systems inner membrane component
[Frankia sp. EUN1f]
gi|288351058|gb|EFC85270.1| binding-protein-dependent transport systems inner membrane component
[Frankia sp. EUN1f]
Length=282
Score = 360 bits (925), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 189/283 (67%), Positives = 234/283 (83%), Gaps = 1/283 (0%)
Query 25 LAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILIDRYWWTA 84
+ ++L APA ++++ VTAYPIGYA++LSL+R +L P DTAF+GL NY T+L WW A
Sbjct 1 MGWLLCAPAVLVILLVTAYPIGYAVYLSLRRYDLRFPADTAFVGLANYGTVLSSGLWWQA 60
Query 85 LAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYSWYYAWT 144
L +T+ IT VSV IEFVLGLALAL+MHRTL+G+GLVRT +LIPYGIVTVVA++ W +AWT
Sbjct 61 LKITMIITVVSVAIEFVLGLALALLMHRTLVGRGLVRTVILIPYGIVTVVAAFGWRFAWT 120
Query 145 PGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDLLRAAQV 204
PGTGYLA L D+APLT Q + ++++AEVWKTTPFM+LLLLAGLALVPE+LLRAAQV
Sbjct 121 PGTGYLAGLFG-DAAPLTSQTWGVAVIILAEVWKTTPFMALLLLAGLALVPEELLRAAQV 179
Query 205 DGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSILGYDNL 264
DGA AW RL +V LP++KPAI+VALLFRTLD FRIFD+IYVLT G+++T SVSILGYDNL
Sbjct 180 DGAGAWARLRRVTLPLMKPAILVALLFRTLDGFRIFDDIYVLTAGAHDTRSVSILGYDNL 239
Query 265 FKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR 307
F N+G+GSA+SVLIFG VA+IA +F++ FG AAPG E R
Sbjct 240 FTALNLGVGSALSVLIFGVVALIAVVFVRGFGTAAPGQETDHR 282
>gi|158316385|ref|YP_001508893.1| binding-protein-dependent transport systems inner membrane component
[Frankia sp. EAN1pec]
gi|158111790|gb|ABW13987.1| binding-protein-dependent transport systems inner membrane component
[Frankia sp. EAN1pec]
Length=331
Score = 353 bits (905), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 192/283 (68%), Positives = 237/283 (84%), Gaps = 1/283 (0%)
Query 21 AERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILIDRY 80
AERRL + L APA ++++AVT YP+GYA++LSL R +L P D+ F+GL NY T+L
Sbjct 47 AERRLGWALCAPAVIVILAVTGYPVGYAVYLSLHRYDLRFPADSEFVGLTNYATVLTSPL 106
Query 81 WWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYSWY 140
WW ALAVT+ I +SVTI+FVLGLALAL MHR LIG+GL+RT +LIPYGIVTVVA++ W
Sbjct 107 WWQALAVTVIIAVISVTIQFVLGLALALAMHRALIGRGLIRTVILIPYGIVTVVAAFGWR 166
Query 141 YAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDLLR 200
YAWTP TGYL+ L D+APLT Q+ + ++V+AEVWKTTPFM LLLLAGLALVPEDLLR
Sbjct 167 YAWTPDTGYLSGLFG-DAAPLTSQVQGIAVIVLAEVWKTTPFMVLLLLAGLALVPEDLLR 225
Query 201 AAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSILG 260
AA+VDGA+AW+RLT+VILP++KPAI+VALLFR LDAFRIFD+IYVLT G+ +T SVSILG
Sbjct 226 AAKVDGATAWQRLTRVILPLMKPAILVALLFRVLDAFRIFDSIYVLTAGAYDTRSVSILG 285
Query 261 YDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGE 303
YDNLF N+G+GS++SVLIF VA++AF+F+K FGAAAPGGE
Sbjct 286 YDNLFTALNLGVGSSLSVLIFLVVALVAFVFVKGFGAAAPGGE 328
>gi|291302103|ref|YP_003513381.1| binding-protein-dependent transporter inner membrane component
[Stackebrandtia nassauensis DSM 44728]
gi|290571323|gb|ADD44288.1| binding-protein-dependent transport systems inner membrane component
[Stackebrandtia nassauensis DSM 44728]
Length=299
Score = 352 bits (904), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 172/287 (60%), Positives = 222/287 (78%), Gaps = 0/287 (0%)
Query 16 TGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTI 75
+ ++ AERRL ++L APAA++M+AV +PI ++ S QR++L P+D F+G NY T+
Sbjct 11 SDAKAAERRLGWLLCAPAAIVMLAVAGWPILLSIITSFQRSDLRFPDDKGFVGFANYATV 70
Query 76 LIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVA 135
L +WWTA VT+ I VSV +E VLG+ LA+VMHRTL+ KGL+RT VLIPYGIVTVVA
Sbjct 71 LTSEHWWTAFGVTMLIMVVSVAVELVLGMGLAVVMHRTLVAKGLLRTTVLIPYGIVTVVA 130
Query 136 SYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVP 195
+Y W YAWTP TG+LA LLP SAPLT++ P+L I++ AE+WKTTPFM+LLLLAGL++VP
Sbjct 131 AYGWQYAWTPDTGWLAGLLPEGSAPLTERWPALLIIIGAEIWKTTPFMALLLLAGLSVVP 190
Query 196 EDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGS 255
++L RAA +DGA W+R KV LP++KPAI+VALLFR LDAFRI+DNIYVLT G+ +T S
Sbjct 191 DELHRAASMDGAGRWQRFVKVTLPLMKPAILVALLFRMLDAFRIYDNIYVLTNGAQDTAS 250
Query 256 VSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGG 302
VSI Y NL G N+G+GS +SVLIF VA+IAFIF+K G + P G
Sbjct 251 VSITTYHNLVSGLNLGIGSTMSVLIFVTVAIIAFIFVKGLGTSTPEG 297
>gi|291298567|ref|YP_003509845.1| binding-protein-dependent transporter inner membrane component
[Stackebrandtia nassauensis DSM 44728]
gi|290567787|gb|ADD40752.1| binding-protein-dependent transport systems inner membrane component
[Stackebrandtia nassauensis DSM 44728]
Length=292
Score = 333 bits (855), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 171/286 (60%), Positives = 219/286 (77%), Gaps = 0/286 (0%)
Query 16 TGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTI 75
T + AERRL L APAA M+ V +PI Y++ LS +R +L P+D A++G NY T+
Sbjct 3 TDVKAAERRLGLWLCAPAAAFMLLVAGWPILYSVILSFKRYDLRFPDDQAWVGFSNYATV 62
Query 76 LIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVA 135
L + +WWT+ VT+ IT VSV E VLG+ALA VM+RTL+ KGL+RT VLIPYGIVTVVA
Sbjct 63 LTNEFWWTSFGVTMIITVVSVAFELVLGMALAQVMYRTLVAKGLLRTVVLIPYGIVTVVA 122
Query 136 SYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVP 195
++ W+YAWTPGTG+LA +LP APLT+ P++GI+++AEVWKTTPFM+LLLLAGLA+VP
Sbjct 123 AFGWFYAWTPGTGWLAAMLPDGEAPLTEFWPAIGIIILAEVWKTTPFMALLLLAGLAIVP 182
Query 196 EDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGS 255
E+L RAA +DGA W+R ++ LP+++PAI VALLFR LDAFRI+DNIYVLT GS +TGS
Sbjct 183 EELHRAAAMDGAGRWQRFVRITLPLMRPAIAVALLFRILDAFRIYDNIYVLTKGSQSTGS 242
Query 256 VSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPG 301
VSIL Y NL G N+G+GS +SVLIF VA+IAF F+ + PG
Sbjct 243 VSILTYRNLVSGLNLGIGSTMSVLIFITVAIIAFFFVTVLKTGTPG 288
>gi|333918622|ref|YP_004492203.1| binding-protein-dependent transport systems inner membrane component
[Amycolicicoccus subflavus DQS3-9A1]
gi|333480843|gb|AEF39403.1| Binding-protein-dependent transport systems inner membrane component
[Amycolicicoccus subflavus DQS3-9A1]
Length=312
Score = 319 bits (818), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 179/300 (60%), Positives = 231/300 (77%), Gaps = 4/300 (1%)
Query 8 TATAVFSRTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFI 67
TA A + + AERRL +L APA ++M+AV AYP+ YA+WLS R +L TP+D FI
Sbjct 17 TAIAKQRHSEGKRAERRLGLLLCAPAIIVMLAVAAYPLVYAVWLSFFRADLRTPDDQEFI 76
Query 68 GLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIP 127
GLGNY T+L WW A VT+ IT + + VLG+ LA+VMHRT+IG+GLVRT+ L+P
Sbjct 77 GLGNYITVLSSPIWWNAFGVTMFITVIGTFFQLVLGMLLAIVMHRTIIGRGLVRTSALVP 136
Query 128 YGIVTVVASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLL 187
Y IVTVVA++SW +AWT G+LA +SAPLT + SL I++++EVWKT PFM+LLL
Sbjct 137 YAIVTVVAAFSWRFAWTQNLGWLAG----ESAPLTDRWSSLWIIILSEVWKTVPFMALLL 192
Query 188 LAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLT 247
+AGLALVPEDLL+AA +DGA+AW+R +V +P+IKPAI+VALLFRTLD+FRIFDNI+VLT
Sbjct 193 MAGLALVPEDLLKAASMDGANAWQRFWRVTVPIIKPAILVALLFRTLDSFRIFDNIFVLT 252
Query 248 GGSNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR 307
G+N+T SVSIL Y+NL +G N+G+GS +SVLIF +A+IAFI+IKLFGAAAPG R
Sbjct 253 SGANDTASVSILAYNNLIRGLNLGIGSTMSVLIFISIAIIAFIYIKLFGAAAPGAGDDRR 312
>gi|333920160|ref|YP_004493741.1| binding-protein-dependent transport systems inner membrane component
[Amycolicicoccus subflavus DQS3-9A1]
gi|333482381|gb|AEF40941.1| Binding-protein-dependent transport systems inner membrane component
[Amycolicicoccus subflavus DQS3-9A1]
Length=312
Score = 318 bits (816), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 179/300 (60%), Positives = 231/300 (77%), Gaps = 4/300 (1%)
Query 8 TATAVFSRTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFI 67
TA A + + AERRL +L APA ++M+AV AYP+ YA+WLS R +L TP+D FI
Sbjct 17 TAIAKQRHSEGKRAERRLGLLLCAPAIIVMLAVAAYPLIYAVWLSFFRADLRTPDDQEFI 76
Query 68 GLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIP 127
GLGNY T+L WW A VT+ IT + + VLG+ LA+VMHRT+IG+GLVRT+ L+P
Sbjct 77 GLGNYITVLSSPIWWNAFGVTMFITVIGTFFQLVLGMLLAIVMHRTIIGRGLVRTSALVP 136
Query 128 YGIVTVVASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLL 187
Y IVTVVA++SW +AWT G+LA +SAPLT + SL I++++EVWKT PFM+LLL
Sbjct 137 YAIVTVVAAFSWRFAWTQNLGWLAG----ESAPLTDRWSSLWIIILSEVWKTVPFMALLL 192
Query 188 LAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLT 247
+AGLALVPEDLL+AA +DGA+AW+R +V +P+IKPAI+VALLFRTLD+FRIFDNI+VLT
Sbjct 193 MAGLALVPEDLLKAASMDGANAWQRFWRVTVPIIKPAILVALLFRTLDSFRIFDNIFVLT 252
Query 248 GGSNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR 307
G+N+T SVSIL Y+NL +G N+G+GS +SVLIF +A+IAFI+IKLFGAAAPG R
Sbjct 253 SGANDTASVSILAYNNLIRGLNLGIGSTMSVLIFISIAIIAFIYIKLFGAAAPGAGDDRR 312
Lambda K H
0.326 0.139 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 521296303248
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40