BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1236

Length=307
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15608376|ref|NP_215752.1|  sugar-transport integral membrane p...   606    2e-171
gi|306807123|ref|ZP_07443791.1|  sugar-transport membrane protein...   604    6e-171
gi|339294222|gb|AEJ46333.1|  sugar-transport integral membrane pr...   603    1e-170
gi|308231790|ref|ZP_07663933.1|  sugar-transport membrane protein...   569    2e-160
gi|240173002|ref|ZP_04751660.1|  putative sugar-transport integra...   505    4e-141
gi|41408645|ref|NP_961481.1|  SugA [Mycobacterium avium subsp. pa...   483    2e-134
gi|118462792|ref|YP_880619.1|  ABC transporter permease [Mycobact...   482    4e-134
gi|183984177|ref|YP_001852468.1|  sugar-transport integral membra...   480    1e-133
gi|296170137|ref|ZP_06851735.1|  sugar ABC superfamily ATP bindin...   476    2e-132
gi|336458567|gb|EGO37534.1|  permease component of ABC-type sugar...   469    2e-130
gi|15827532|ref|NP_301795.1|  ABC transporter inner membrane prot...   464    6e-129
gi|699149|gb|AAA62915.1|  malf [Mycobacterium leprae]                  464    8e-129
gi|342862115|ref|ZP_08718758.1|  SugA [Mycobacterium colombiense ...   460    1e-127
gi|254823049|ref|ZP_05228050.1|  SugA [Mycobacterium intracellula...   459    2e-127
gi|333989847|ref|YP_004522461.1|  sugar-transport integral membra...   459    3e-127
gi|126436571|ref|YP_001072262.1|  binding-protein-dependent trans...   458    5e-127
gi|108800946|ref|YP_641143.1|  binding-protein-dependent transpor...   456    1e-126
gi|118471165|ref|YP_889310.1|  ABC transporter permease [Mycobact...   455    3e-126
gi|111022952|ref|YP_705924.1|  sugar ABC transporter permease [Rh...   434    7e-120
gi|118619615|ref|YP_907947.1|  sugar-transport integral membrane ...   434    9e-120
gi|226307633|ref|YP_002767593.1|  ABC transporter permease protei...   431    9e-119
gi|229493745|ref|ZP_04387527.1|  ABC sugar transporter, permease ...   430    1e-118
gi|296138927|ref|YP_003646170.1|  binding-protein-dependent trans...   414    7e-114
gi|226365458|ref|YP_002783241.1|  ABC transporter permease protei...   413    2e-113
gi|326382046|ref|ZP_08203739.1|  binding-protein-dependent transp...   409    4e-112
gi|262201808|ref|YP_003273016.1|  binding-protein-dependent trans...   408    5e-112
gi|343928020|ref|ZP_08767485.1|  putative ABC transporter permeas...   407    8e-112
gi|169628464|ref|YP_001702113.1|  sugar ABC transporter permease ...   391    9e-107
gi|257054716|ref|YP_003132548.1|  carbohydrate ABC transporter me...   389    2e-106
gi|331694915|ref|YP_004331154.1|  ABC transporter integral membra...   388    8e-106
gi|317508230|ref|ZP_07965910.1|  inner membrane transporter [Segn...   387    1e-105
gi|213966432|ref|ZP_03394609.1|  ABC sugar transporter, permease ...   385    6e-105
gi|300783009|ref|YP_003763300.1|  sugar ABC transporter permease ...   382    3e-104
gi|238060005|ref|ZP_04604714.1|  ABC sugar transporter permease c...   380    2e-103
gi|296394485|ref|YP_003659369.1|  binding-protein-dependent trans...   379    2e-103
gi|291435775|ref|ZP_06575165.1|  ABC sugar transporter [Streptomy...   379    3e-103
gi|330468991|ref|YP_004406734.1|  binding-protein-dependent trans...   379    3e-103
gi|302562112|ref|ZP_07314454.1|  sugar ABC transporter, permease ...   379    3e-103
gi|302868630|ref|YP_003837267.1|  binding-protein-dependent trans...   377    9e-103
gi|291008814|ref|ZP_06566787.1|  ABC sugar transporter, permease ...   376    3e-102
gi|134097642|ref|YP_001103303.1|  ABC sugar transporter, permease...   375    4e-102
gi|302524364|ref|ZP_07276706.1|  ABC sugar transporter [Streptomy...   373    2e-101
gi|312197858|ref|YP_004017919.1|  sugar ABC transporter permease ...   364    1e-98 
gi|256374955|ref|YP_003098615.1|  ABC transporter inner membrane ...   362    5e-98 
gi|288917512|ref|ZP_06411877.1|  binding-protein-dependent transp...   360    1e-97 
gi|158316385|ref|YP_001508893.1|  binding-protein-dependent trans...   353    3e-95 
gi|291302103|ref|YP_003513381.1|  binding-protein-dependent trans...   352    3e-95 
gi|291298567|ref|YP_003509845.1|  binding-protein-dependent trans...   333    2e-89 
gi|333918622|ref|YP_004492203.1|  binding-protein-dependent trans...   319    3e-85 
gi|333920160|ref|YP_004493741.1|  binding-protein-dependent trans...   318    5e-85 


>gi|15608376|ref|NP_215752.1| sugar-transport integral membrane protein ABC transporter SugA 
[Mycobacterium tuberculosis H37Rv]
 gi|15840681|ref|NP_335718.1| sugar ABC transporter, permease protein [Mycobacterium tuberculosis 
CDC1551]
 gi|31792429|ref|NP_854922.1| sugar-transport integral membrane protein ABC transporter SugA 
[Mycobacterium bovis AF2122/97]
 62 more sequence titles
 Length=307

 Score =  606 bits (1562),  Expect = 2e-171, Method: Compositional matrix adjust.
 Identities = 306/307 (99%), Positives = 307/307 (100%), Gaps = 0/307 (0%)

Query  1    VTSVEQRTATAVFSRTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLAT  60
            +TSVEQRTATAVFSRTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLAT
Sbjct  1    MTSVEQRTATAVFSRTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLAT  60

Query  61   PNDTAFIGLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLV  120
            PNDTAFIGLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLV
Sbjct  61   PNDTAFIGLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLV  120

Query  121  RTAVLIPYGIVTVVASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTT  180
            RTAVLIPYGIVTVVASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTT
Sbjct  121  RTAVLIPYGIVTVVASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTT  180

Query  181  PFMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIF  240
            PFMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIF
Sbjct  181  PFMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIF  240

Query  241  DNIYVLTGGSNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAP  300
            DNIYVLTGGSNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAP
Sbjct  241  DNIYVLTGGSNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAP  300

Query  301  GGEPSGR  307
            GGEPSGR
Sbjct  301  GGEPSGR  307


>gi|306807123|ref|ZP_07443791.1| sugar-transport membrane protein ABC transporter sugA [Mycobacterium 
tuberculosis SUMu007]
 gi|306967320|ref|ZP_07479981.1| sugar-transport membrane protein ABC transporter sugA [Mycobacterium 
tuberculosis SUMu009]
 gi|308346462|gb|EFP35313.1| sugar-transport membrane protein ABC transporter sugA [Mycobacterium 
tuberculosis SUMu007]
 gi|308355034|gb|EFP43885.1| sugar-transport membrane protein ABC transporter sugA [Mycobacterium 
tuberculosis SUMu009]
Length=307

 Score =  604 bits (1557),  Expect = 6e-171, Method: Compositional matrix adjust.
 Identities = 305/307 (99%), Positives = 307/307 (100%), Gaps = 0/307 (0%)

Query  1    VTSVEQRTATAVFSRTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLAT  60
            +TSVEQRTATAVFSRTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQR+NLAT
Sbjct  1    MTSVEQRTATAVFSRTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRDNLAT  60

Query  61   PNDTAFIGLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLV  120
            PNDTAFIGLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLV
Sbjct  61   PNDTAFIGLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLV  120

Query  121  RTAVLIPYGIVTVVASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTT  180
            RTAVLIPYGIVTVVASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTT
Sbjct  121  RTAVLIPYGIVTVVASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTT  180

Query  181  PFMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIF  240
            PFMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIF
Sbjct  181  PFMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIF  240

Query  241  DNIYVLTGGSNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAP  300
            DNIYVLTGGSNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAP
Sbjct  241  DNIYVLTGGSNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAP  300

Query  301  GGEPSGR  307
            GGEPSGR
Sbjct  301  GGEPSGR  307


>gi|339294222|gb|AEJ46333.1| sugar-transport integral membrane protein ABC transporter SugA 
[Mycobacterium tuberculosis CCDC5079]
Length=307

 Score =  603 bits (1555),  Expect = 1e-170, Method: Compositional matrix adjust.
 Identities = 305/307 (99%), Positives = 306/307 (99%), Gaps = 0/307 (0%)

Query  1    VTSVEQRTATAVFSRTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLAT  60
            +TSVEQRTATAVFSRTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLAT
Sbjct  1    MTSVEQRTATAVFSRTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLAT  60

Query  61   PNDTAFIGLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLV  120
            PNDTAFIGLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLV
Sbjct  61   PNDTAFIGLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLV  120

Query  121  RTAVLIPYGIVTVVASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTT  180
            RTAVLIPYGIVTVVASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTT
Sbjct  121  RTAVLIPYGIVTVVASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTT  180

Query  181  PFMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIF  240
            PFMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIF
Sbjct  181  PFMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIF  240

Query  241  DNIYVLTGGSNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAP  300
            DNIYVLT GSNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAP
Sbjct  241  DNIYVLTDGSNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAP  300

Query  301  GGEPSGR  307
            GGEPSGR
Sbjct  301  GGEPSGR  307


>gi|308231790|ref|ZP_07663933.1| sugar-transport membrane protein ABC transporter sugA [Mycobacterium 
tuberculosis SUMu001]
 gi|308370016|ref|ZP_07666847.1| sugar-transport membrane protein ABC transporter sugA [Mycobacterium 
tuberculosis SUMu002]
 gi|308373086|ref|ZP_07667508.1| sugar-transport membrane protein ABC transporter sugA [Mycobacterium 
tuberculosis SUMu005]
 8 more sequence titles
 Length=288

 Score =  569 bits (1467),  Expect = 2e-160, Method: Compositional matrix adjust.
 Identities = 288/288 (100%), Positives = 288/288 (100%), Gaps = 0/288 (0%)

Query  20   MAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILIDR  79
            MAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILIDR
Sbjct  1    MAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILIDR  60

Query  80   YWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYSW  139
            YWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYSW
Sbjct  61   YWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYSW  120

Query  140  YYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDLL  199
            YYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDLL
Sbjct  121  YYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDLL  180

Query  200  RAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSIL  259
            RAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSIL
Sbjct  181  RAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSIL  240

Query  260  GYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR  307
            GYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR
Sbjct  241  GYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR  288


>gi|240173002|ref|ZP_04751660.1| putative sugar-transport integral membrane protein ABC transporter 
[Mycobacterium kansasii ATCC 12478]
Length=299

 Score =  505 bits (1300),  Expect = 4e-141, Method: Compositional matrix adjust.
 Identities = 259/298 (87%), Positives = 278/298 (94%), Gaps = 0/298 (0%)

Query  10   TAVFSRTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGL  69
            T  F R+G+R AE+RLAF+LVAPAA+LM+AVTAYPIGYA+WLSLQRNNLATP++TAFIGL
Sbjct  2    THAFVRSGNRRAEQRLAFILVAPAALLMLAVTAYPIGYAVWLSLQRNNLATPDETAFIGL  61

Query  70   GNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYG  129
             NY T+L DRYWWTAL VTLAIT VSVT+EFVLGLALALVMHRTLIGKGLVRTAVLIPYG
Sbjct  62   ENYRTVLTDRYWWTALTVTLAITVVSVTLEFVLGLALALVMHRTLIGKGLVRTAVLIPYG  121

Query  130  IVTVVASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLA  189
            IVTVVASYSWYYAWTPGTGYLANLLP+ SAPLTQQ+PSLG+VVIAEVWKTTPFMSLLLLA
Sbjct  122  IVTVVASYSWYYAWTPGTGYLANLLPHGSAPLTQQVPSLGVVVIAEVWKTTPFMSLLLLA  181

Query  190  GLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGG  249
            GLALVPEDLL+AAQVDGA AWRRLTKVILP+IKPA+VVALLFRTLDAFRIFDNIYVLT G
Sbjct  182  GLALVPEDLLKAAQVDGAGAWRRLTKVILPIIKPAVVVALLFRTLDAFRIFDNIYVLTAG  241

Query  250  SNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR  307
             NNT SVSILGYDNLFKGFNVGLGSAISVLIFGCV +IA  FIKLFGAAAPG +  GR
Sbjct  242  ENNTESVSILGYDNLFKGFNVGLGSAISVLIFGCVGIIALTFIKLFGAAAPGSDADGR  299


>gi|41408645|ref|NP_961481.1| SugA [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41397003|gb|AAS04864.1| SugA [Mycobacterium avium subsp. paratuberculosis K-10]
Length=311

 Score =  483 bits (1242),  Expect = 2e-134, Method: Compositional matrix adjust.
 Identities = 247/289 (86%), Positives = 269/289 (94%), Gaps = 0/289 (0%)

Query  19   RMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILID  78
            R +E+RLA +LVAPAA+LM+AVTAYPIGYA+WLSLQRNNLA P+DTAF+GL NY TIL D
Sbjct  23   RTSEQRLALVLVAPAAILMLAVTAYPIGYAVWLSLQRNNLAAPHDTAFVGLSNYATILSD  82

Query  79   RYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYS  138
            RYWWTALAVTL IT VSV+ EFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVT VASYS
Sbjct  83   RYWWTALAVTLGITVVSVSAEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTAVASYS  142

Query  139  WYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDL  198
            WYYAWTPGTGYLANLLP+ SAPLT QIPSL IVV+AEVWKTTPFMSLLLLAGLALVPEDL
Sbjct  143  WYYAWTPGTGYLANLLPHGSAPLTAQIPSLAIVVLAEVWKTTPFMSLLLLAGLALVPEDL  202

Query  199  LRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSI  258
            L+AAQVDGA AWRRLT+V LP+IKPA+VVALLFRTLDAFRIFDNIYVLT G+NNTGSVS+
Sbjct  203  LKAAQVDGAGAWRRLTRVTLPIIKPAVVVALLFRTLDAFRIFDNIYVLTNGANNTGSVSM  262

Query  259  LGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR  307
            LGYDNLFKGFNVGLGSAISVLIFGCV +IA +F+K+FGAAAPGG+  GR
Sbjct  263  LGYDNLFKGFNVGLGSAISVLIFGCVGLIALVFVKVFGAAAPGGDVDGR  311


>gi|118462792|ref|YP_880619.1| ABC transporter permease [Mycobacterium avium 104]
 gi|254774253|ref|ZP_05215769.1| SugA [Mycobacterium avium subsp. avium ATCC 25291]
 gi|118164079|gb|ABK64976.1| ABC transporter, permease protein SugA [Mycobacterium avium 104]
Length=292

 Score =  482 bits (1240),  Expect = 4e-134, Method: Compositional matrix adjust.
 Identities = 246/289 (86%), Positives = 269/289 (94%), Gaps = 0/289 (0%)

Query  19   RMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILID  78
            R +E+RLA +LVAPAA+LM+AVTAYPIGYA+WLSLQRNNLA P+DTAF+GL NY TIL D
Sbjct  4    RTSEQRLALVLVAPAAILMLAVTAYPIGYAVWLSLQRNNLAAPHDTAFVGLSNYATILSD  63

Query  79   RYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYS  138
            RYWWTALAVTL IT VSV+ EFVLGLALALVMHRTL+GKGLVRTAVLIPYGIVT VASYS
Sbjct  64   RYWWTALAVTLGITVVSVSAEFVLGLALALVMHRTLVGKGLVRTAVLIPYGIVTAVASYS  123

Query  139  WYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDL  198
            WYYAWTPGTGYLANLLP+ SAPLT QIPSL IVV+AEVWKTTPFMSLLLLAGLALVPEDL
Sbjct  124  WYYAWTPGTGYLANLLPHGSAPLTAQIPSLAIVVLAEVWKTTPFMSLLLLAGLALVPEDL  183

Query  199  LRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSI  258
            L+AAQVDGA AWRRLT+V LP+IKPA+VVALLFRTLDAFRIFDNIYVLT G+NNTGSVS+
Sbjct  184  LKAAQVDGAGAWRRLTRVTLPIIKPAVVVALLFRTLDAFRIFDNIYVLTNGANNTGSVSM  243

Query  259  LGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR  307
            LGYDNLFKGFNVGLGSAISVLIFGCV +IA +F+K+FGAAAPGG+  GR
Sbjct  244  LGYDNLFKGFNVGLGSAISVLIFGCVGLIALVFVKVFGAAAPGGDVDGR  292


>gi|183984177|ref|YP_001852468.1| sugar-transport integral membrane protein ABC transporter SugA 
[Mycobacterium marinum M]
 gi|183177503|gb|ACC42613.1| sugar-transport integral membrane protein ABC transporter SugA 
[Mycobacterium marinum M]
Length=302

 Score =  480 bits (1235),  Expect = 1e-133, Method: Compositional matrix adjust.
 Identities = 241/287 (84%), Positives = 259/287 (91%), Gaps = 4/287 (1%)

Query  25   LAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILIDRYWWTA  84
            LAF LVAPA +LM+ V  YPIGYA+WLSLQRNNLATPN+T FIGLGNY TIL+DRYWWTA
Sbjct  16   LAFALVAPATILMLLVIGYPIGYAMWLSLQRNNLATPNETRFIGLGNYQTILVDRYWWTA  75

Query  85   LAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYSWYYAWT  144
            LAVT AIT VSV  EFVLGLALALVMHR+L+ KGLVRTAVL+PYGIVTVVASYSWYYAWT
Sbjct  76   LAVTAAITVVSVACEFVLGLALALVMHRSLVAKGLVRTAVLVPYGIVTVVASYSWYYAWT  135

Query  145  PGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDLLRAAQV  204
            PGTGYLANLLP  SAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLA+VPEDLL+AAQV
Sbjct  136  PGTGYLANLLPQGSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLAMVPEDLLQAAQV  195

Query  205  DGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSILGYDNL  264
            DGA AWRRLTK+ILP+IKPA++VALLFRTLDAFRIFDNIYVLTGG N+T SVSILGYDNL
Sbjct  196  DGAGAWRRLTKIILPLIKPAVLVALLFRTLDAFRIFDNIYVLTGGDNDTASVSILGYDNL  255

Query  265  FKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGA----AAPGGEPSGR  307
            FKGFNVGLGSAISVLIFGCV +IA +FI LFGA    +APGG    R
Sbjct  256  FKGFNVGLGSAISVLIFGCVTLIAVVFITLFGAHQFHSAPGGVTDAR  302


>gi|296170137|ref|ZP_06851735.1| sugar ABC superfamily ATP binding cassette transporter, permease 
protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295895199|gb|EFG74913.1| sugar ABC superfamily ATP binding cassette transporter, permease 
protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=310

 Score =  476 bits (1225),  Expect = 2e-132, Method: Compositional matrix adjust.
 Identities = 242/288 (85%), Positives = 267/288 (93%), Gaps = 0/288 (0%)

Query  20   MAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILIDR  79
            ++E RLAF LVAPAA+LM++VTAYPIGYA+WLSLQRNNLATP+DTAF+GL NY TIL DR
Sbjct  23   LSEWRLAFTLVAPAAILMLSVTAYPIGYAVWLSLQRNNLATPDDTAFVGLSNYQTILTDR  82

Query  80   YWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYSW  139
            YWW+ALAVTL IT VSV++EFVLGLALALVMHRTL+G+G+VRTAVLIPYGIVTVVASYSW
Sbjct  83   YWWSALAVTLGITVVSVSLEFVLGLALALVMHRTLVGRGVVRTAVLIPYGIVTVVASYSW  142

Query  140  YYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDLL  199
            YYAWTPGTGYLANLLP+ SAPLTQQIPSLGIVV+AEVWKTTPFMSLLLLAGLALVPEDLL
Sbjct  143  YYAWTPGTGYLANLLPHGSAPLTQQIPSLGIVVLAEVWKTTPFMSLLLLAGLALVPEDLL  202

Query  200  RAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSIL  259
            RAAQVDGA  WRRL +V LP+IKPA+VVALLFRTLDAFRIFDNIYVLT G+NNT SVSIL
Sbjct  203  RAAQVDGAGPWRRLVRVTLPIIKPAVVVALLFRTLDAFRIFDNIYVLTDGANNTDSVSIL  262

Query  260  GYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR  307
            GYDNLFKGFNVGLGSAISVLIF C  +IA ++IK+FG AAPGG+P G 
Sbjct  263  GYDNLFKGFNVGLGSAISVLIFVCAGIIALVYIKVFGVAAPGGDPDGH  310


>gi|336458567|gb|EGO37534.1| permease component of ABC-type sugar transporter [Mycobacterium 
avium subsp. paratuberculosis S397]
Length=270

 Score =  469 bits (1207),  Expect = 2e-130, Method: Compositional matrix adjust.
 Identities = 234/271 (87%), Positives = 252/271 (93%), Gaps = 1/271 (0%)

Query  37   MVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILIDRYWWTALAVTLAITAVSV  96
            M+AVTAYPIGYA+WLSLQRNNLA P+DTAF+GL NY TIL DRYWWTALAVTL IT VSV
Sbjct  1    MLAVTAYPIGYAVWLSLQRNNLAAPHDTAFVGLSNYATILSDRYWWTALAVTLGITVVSV  60

Query  97   TIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYSWYYAWTPGTGYLANLLPY  156
            + EFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVT VASYSWYYAWTPGTGYLANLLP+
Sbjct  61   SAEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTAVASYSWYYAWTPGTGYLANLLPH  120

Query  157  DSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKV  216
             SAPLT QIPSL IVV+AEVWKTTPFMS LLLAGLALVPEDLL+AAQVDGA AWRRLT+V
Sbjct  121  GSAPLTAQIPSLAIVVLAEVWKTTPFMS-LLLAGLALVPEDLLKAAQVDGAGAWRRLTRV  179

Query  217  ILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSILGYDNLFKGFNVGLGSAI  276
             LP+IKPA+VVALLFRTLDAFRIFDNIYVLT G+NNTGSVS+LGYDNLFKGFNVGLGSAI
Sbjct  180  TLPIIKPAVVVALLFRTLDAFRIFDNIYVLTNGANNTGSVSMLGYDNLFKGFNVGLGSAI  239

Query  277  SVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR  307
            SVLIFGCV +IA +F+K+FGAAAPGG+  GR
Sbjct  240  SVLIFGCVGLIALVFVKVFGAAAPGGDVDGR  270


>gi|15827532|ref|NP_301795.1| ABC transporter inner membrane protein [Mycobacterium leprae 
TN]
 gi|221230009|ref|YP_002503425.1| putative ABC-transport protein, inner membrane component [Mycobacterium 
leprae Br4923]
 gi|13093082|emb|CAC31468.1| probable ABC-transport protein, inner membrane component [Mycobacterium 
leprae]
 gi|219933116|emb|CAR71182.1| probable ABC-transport protein, inner membrane component [Mycobacterium 
leprae Br4923]
Length=304

 Score =  464 bits (1195),  Expect = 6e-129, Method: Compositional matrix adjust.
 Identities = 239/292 (82%), Positives = 261/292 (90%), Gaps = 0/292 (0%)

Query  15   RTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHT  74
            R  S   E+RLAF+LV PAAMLM+ VTAYPIGYA+WLSLQR +LATPN+T FIGLGNY T
Sbjct  12   RASSVQPEQRLAFLLVTPAAMLMLVVTAYPIGYAVWLSLQRYSLATPNETVFIGLGNYQT  71

Query  75   ILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVV  134
            IL D YWWTALAVTLAIT VSV+IEF+LGL LALVMHRTL+GK LVR AVLIPY IVTVV
Sbjct  72   ILTDPYWWTALAVTLAITVVSVSIEFILGLMLALVMHRTLLGKSLVRIAVLIPYSIVTVV  131

Query  135  ASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALV  194
            ASYSWYYAWTPGTGYLA+LLP  S PLT+QIPSL IV+I EVWKTTPFMSLLLL GLALV
Sbjct  132  ASYSWYYAWTPGTGYLASLLPQGSVPLTEQIPSLSIVIIVEVWKTTPFMSLLLLVGLALV  191

Query  195  PEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTG  254
            PEDLL+AAQ+DGA AWRRLTK+ILP+IKPA++VALLFRTLDAFRIFDNIYVLT G NNT 
Sbjct  192  PEDLLKAAQMDGAGAWRRLTKIILPIIKPAVMVALLFRTLDAFRIFDNIYVLTRGVNNTD  251

Query  255  SVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSG  306
            SVSILGYDNLFKGFNVGLGSAISVLIFGCVA+IA IFIK+FG  APGG+ +G
Sbjct  252  SVSILGYDNLFKGFNVGLGSAISVLIFGCVALIAVIFIKVFGVVAPGGDSNG  303


>gi|699149|gb|AAA62915.1| malf [Mycobacterium leprae]
Length=310

 Score =  464 bits (1194),  Expect = 8e-129, Method: Compositional matrix adjust.
 Identities = 239/292 (82%), Positives = 261/292 (90%), Gaps = 0/292 (0%)

Query  15   RTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHT  74
            R  S   E+RLAF+LV PAAMLM+ VTAYPIGYA+WLSLQR +LATPN+T FIGLGNY T
Sbjct  18   RASSVQPEQRLAFLLVTPAAMLMLVVTAYPIGYAVWLSLQRYSLATPNETVFIGLGNYQT  77

Query  75   ILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVV  134
            IL D YWWTALAVTLAIT VSV+IEF+LGL LALVMHRTL+GK LVR AVLIPY IVTVV
Sbjct  78   ILTDPYWWTALAVTLAITVVSVSIEFILGLMLALVMHRTLLGKSLVRIAVLIPYSIVTVV  137

Query  135  ASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALV  194
            ASYSWYYAWTPGTGYLA+LLP  S PLT+QIPSL IV+I EVWKTTPFMSLLLL GLALV
Sbjct  138  ASYSWYYAWTPGTGYLASLLPQGSVPLTEQIPSLSIVIIVEVWKTTPFMSLLLLVGLALV  197

Query  195  PEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTG  254
            PEDLL+AAQ+DGA AWRRLTK+ILP+IKPA++VALLFRTLDAFRIFDNIYVLT G NNT 
Sbjct  198  PEDLLKAAQMDGAGAWRRLTKIILPIIKPAVMVALLFRTLDAFRIFDNIYVLTRGVNNTD  257

Query  255  SVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSG  306
            SVSILGYDNLFKGFNVGLGSAISVLIFGCVA+IA IFIK+FG  APGG+ +G
Sbjct  258  SVSILGYDNLFKGFNVGLGSAISVLIFGCVALIAVIFIKVFGVVAPGGDSNG  309


>gi|342862115|ref|ZP_08718758.1| SugA [Mycobacterium colombiense CECT 3035]
 gi|342130419|gb|EGT83734.1| SugA [Mycobacterium colombiense CECT 3035]
Length=311

 Score =  460 bits (1184),  Expect = 1e-127, Method: Compositional matrix adjust.
 Identities = 240/292 (83%), Positives = 266/292 (92%), Gaps = 2/292 (0%)

Query  4    VEQRTATAVFS--RTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATP  61
            +E  TA A F+  R   R  E+RLAF+LVAPAA+LMVAVTAYPIGYA+WLSLQRNNLA P
Sbjct  6    IESHTARAPFAMRRLRGRPPEQRLAFLLVAPAAILMVAVTAYPIGYAVWLSLQRNNLAVP  65

Query  62   NDTAFIGLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVR  121
            NDTAF+GL NY TIL DRYWWTALAVTL IT VSV++EFVLGLALALVMHRTL+GKG+VR
Sbjct  66   NDTAFVGLNNYVTILTDRYWWTALAVTLGITVVSVSLEFVLGLALALVMHRTLVGKGVVR  125

Query  122  TAVLIPYGIVTVVASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTP  181
            TAVLIPYGIVTVVASYSWYYAWTPGTGYLA+LLP  SAPLT+QIPSL IVV+AEVWKTTP
Sbjct  126  TAVLIPYGIVTVVASYSWYYAWTPGTGYLADLLPQGSAPLTEQIPSLAIVVLAEVWKTTP  185

Query  182  FMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFD  241
            FMSLLLLAGLALVPEDLL+AAQVDGA AWRRLT VILP+IKPA+VVALLFRTLDAFR+FD
Sbjct  186  FMSLLLLAGLALVPEDLLKAAQVDGAGAWRRLTGVILPIIKPAVVVALLFRTLDAFRVFD  245

Query  242  NIYVLTGGSNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIK  293
            NIYV+T G+N+TGSVS+LGYDNLFKGFNVGLGSAISVLIF C  +IA++FI+
Sbjct  246  NIYVITNGANSTGSVSMLGYDNLFKGFNVGLGSAISVLIFVCAGLIAWVFIR  297


>gi|254823049|ref|ZP_05228050.1| SugA [Mycobacterium intracellulare ATCC 13950]
Length=312

 Score =  459 bits (1182),  Expect = 2e-127, Method: Compositional matrix adjust.
 Identities = 247/293 (85%), Positives = 271/293 (93%), Gaps = 0/293 (0%)

Query  15   RTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHT  74
            RT +R++E+RLA +LVAPAA+LM+ VTAYPIGYA+WLSLQRNNLA P+DTAFIGLGNY T
Sbjct  20   RTRNRLSEQRLALLLVAPAALLMLTVTAYPIGYAVWLSLQRNNLAVPDDTAFIGLGNYVT  79

Query  75   ILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVV  134
            IL DRYWWTALAVTL IT VSVT+EFVLGL LALVMHRTL+GKG+VRTA+LIPYGIVTVV
Sbjct  80   ILTDRYWWTALAVTLGITVVSVTVEFVLGLTLALVMHRTLVGKGMVRTAILIPYGIVTVV  139

Query  135  ASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALV  194
            ASYSWYYAWTPGTGYLANLLP+ SAPLT QIPSL IVV+AEVWKTTPFMSLLLLAGLALV
Sbjct  140  ASYSWYYAWTPGTGYLANLLPHGSAPLTSQIPSLAIVVVAEVWKTTPFMSLLLLAGLALV  199

Query  195  PEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTG  254
            PE+LL+AAQVDGA  WRRLT VILP+IKPA+VVALLFRTLDAFRIFDNIYVLT G+NNT 
Sbjct  200  PEELLKAAQVDGAGPWRRLTGVILPIIKPAVVVALLFRTLDAFRIFDNIYVLTNGANNTD  259

Query  255  SVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR  307
            SVSILGYDNLFKGFNVGLGSAISVLIF CV +IA +FIK+FGAAAPGG+  GR
Sbjct  260  SVSILGYDNLFKGFNVGLGSAISVLIFVCVGLIALLFIKVFGAAAPGGDVDGR  312


>gi|333989847|ref|YP_004522461.1| sugar-transport integral membrane protein ABC transporter SugA 
[Mycobacterium sp. JDM601]
 gi|333485815|gb|AEF35207.1| sugar-transport integral membrane protein ABC transporter SugA 
[Mycobacterium sp. JDM601]
Length=293

 Score =  459 bits (1181),  Expect = 3e-127, Method: Compositional matrix adjust.
 Identities = 237/290 (82%), Positives = 260/290 (90%), Gaps = 1/290 (0%)

Query  14   SRTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYH  73
            SR   R ++RRLA +L+APA +LM+AVTAYPIGYA+WLSL R NLATP+DTAF+GL NY 
Sbjct  3    SRADER-SQRRLALLLIAPAVVLMLAVTAYPIGYAIWLSLLRYNLATPDDTAFVGLANYQ  61

Query  74   TILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTV  133
            T L D YWWTA AVTL IT VSV IEFVLGLALALVMHR+L  KG VRTAVL+PYGIVTV
Sbjct  62   TTLTDSYWWTAFAVTLGITVVSVAIEFVLGLALALVMHRSLFAKGTVRTAVLVPYGIVTV  121

Query  134  VASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLAL  193
             A+YSWYYAWTPGTGYLANLLP  SAPLTQQ+PSLGIV++AEVWKTTPFM+LLLLAGLAL
Sbjct  122  AAAYSWYYAWTPGTGYLANLLPAGSAPLTQQLPSLGIVILAEVWKTTPFMALLLLAGLAL  181

Query  194  VPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNT  253
            VPEDLL+AAQVDGA AWRRL  VILPM+KPAI+VALLFRTLDAFRIFDNIYVLT GSNNT
Sbjct  182  VPEDLLKAAQVDGAGAWRRLVSVILPMMKPAILVALLFRTLDAFRIFDNIYVLTNGSNNT  241

Query  254  GSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGE  303
            GSVSILGYDNLFKGFNVGLGSAISVLIF CVA+IA +F+K+FGAAAPG E
Sbjct  242  GSVSILGYDNLFKGFNVGLGSAISVLIFVCVALIAVLFVKVFGAAAPGSE  291


>gi|126436571|ref|YP_001072262.1| binding-protein-dependent transport systems inner membrane component 
[Mycobacterium sp. JLS]
 gi|126236371|gb|ABN99771.1| carbohydrate ABC transporter membrane protein 1, CUT1 family 
[Mycobacterium sp. JLS]
Length=308

 Score =  458 bits (1178),  Expect = 5e-127, Method: Compositional matrix adjust.
 Identities = 230/287 (81%), Positives = 262/287 (92%), Gaps = 0/287 (0%)

Query  21   AERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILIDRY  80
            ++RRLAFML+APA +LM+AVTAYPIGYA+WLSLQR NLA P+DT F+GL NY T+L DRY
Sbjct  22   SDRRLAFMLIAPAVVLMLAVTAYPIGYAVWLSLQRYNLAEPSDTEFVGLSNYVTVLSDRY  81

Query  81   WWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYSWY  140
            WWTA AVTLAIT VSV IEFVLG+ALALVMHRT+ GKG+VRTA+L+PYGIVTV ASYSWY
Sbjct  82   WWTAFAVTLAITVVSVAIEFVLGMALALVMHRTIFGKGVVRTAILVPYGIVTVAASYSWY  141

Query  141  YAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDLLR  200
            YAWTPGTGYLANLLP  SAPLT+Q+PSL IVV+AEVWKTTPFM+LLLL+GLALVP+DLL 
Sbjct  142  YAWTPGTGYLANLLPEGSAPLTEQLPSLAIVVLAEVWKTTPFMALLLLSGLALVPQDLLN  201

Query  201  AAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSILG  260
            AAQ+DGA  W+RL KVILP+IKPAI+VALLFRTLDAFRIFDNIY+LTGG+NNTGSVSILG
Sbjct  202  AAQMDGAGPWKRLVKVILPLIKPAILVALLFRTLDAFRIFDNIYILTGGANNTGSVSILG  261

Query  261  YDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR  307
            YDNLFK FN+GLGSA+SVLIF CVA+IAFI+IKLFGA+APG +   R
Sbjct  262  YDNLFKAFNLGLGSALSVLIFLCVAIIAFIYIKLFGASAPGSDEERR  308


>gi|108800946|ref|YP_641143.1| binding-protein-dependent transport systems inner membrane component 
[Mycobacterium sp. MCS]
 gi|119870086|ref|YP_940038.1| binding-protein-dependent transport systems inner membrane component 
[Mycobacterium sp. KMS]
 gi|108771365|gb|ABG10087.1| carbohydrate ABC transporter membrane protein 1, CUT1 family 
[Mycobacterium sp. MCS]
 gi|119696175|gb|ABL93248.1| carbohydrate ABC transporter membrane protein 1, CUT1 family 
[Mycobacterium sp. KMS]
Length=308

 Score =  456 bits (1174),  Expect = 1e-126, Method: Compositional matrix adjust.
 Identities = 229/287 (80%), Positives = 262/287 (92%), Gaps = 0/287 (0%)

Query  21   AERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILIDRY  80
            ++RRLAFML+APA +LM+AVTAYPIGYA+WLSLQR NLA P+DT F+GL NY T+L D+Y
Sbjct  22   SDRRLAFMLIAPAVVLMLAVTAYPIGYAVWLSLQRYNLAEPSDTEFVGLSNYVTVLSDQY  81

Query  81   WWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYSWY  140
            WWTA AVTLAIT VSV IEFVLG+ALALVMHRT+ GKG+VRTA+L+PYGIVTV ASYSWY
Sbjct  82   WWTAFAVTLAITVVSVAIEFVLGMALALVMHRTIFGKGVVRTAILVPYGIVTVAASYSWY  141

Query  141  YAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDLLR  200
            YAWTPGTGYLANLLP  SAPLT+Q+PSL IVV+AEVWKTTPFM+LLLL+GLALVP+DLL 
Sbjct  142  YAWTPGTGYLANLLPEGSAPLTEQLPSLAIVVLAEVWKTTPFMALLLLSGLALVPQDLLN  201

Query  201  AAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSILG  260
            AAQ+DGA  W+RL KVILP+IKPAI+VALLFRTLDAFRIFDNIY+LTGG+NNTGSVSILG
Sbjct  202  AAQMDGAGPWKRLVKVILPLIKPAILVALLFRTLDAFRIFDNIYILTGGANNTGSVSILG  261

Query  261  YDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR  307
            YDNLFK FN+GLGSA+SVLIF CVA+IAFI+IKLFGA+APG +   R
Sbjct  262  YDNLFKAFNLGLGSALSVLIFLCVAIIAFIYIKLFGASAPGSDEERR  308


>gi|118471165|ref|YP_889310.1| ABC transporter permease [Mycobacterium smegmatis str. MC2 155]
 gi|118172452|gb|ABK73348.1| ABC transporter, permease protein SugA [Mycobacterium smegmatis 
str. MC2 155]
Length=305

 Score =  455 bits (1171),  Expect = 3e-126, Method: Compositional matrix adjust.
 Identities = 240/307 (79%), Positives = 266/307 (87%), Gaps = 2/307 (0%)

Query  1    VTSVEQRTATAVFSRTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLAT  60
            +T+    +A+AV S    + +ERRLAF L+APA +LM+AVTAYPIGYA+WLSLQR NLA 
Sbjct  1    MTAAVTPSASAVASD--DKKSERRLAFWLIAPAVLLMLAVTAYPIGYAVWLSLQRYNLAE  58

Query  61   PNDTAFIGLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLV  120
            P+DT FIGL NY T+L D YWWTA AVTL IT VSV IEF LGLALALVMHRT+ GKG V
Sbjct  59   PHDTEFIGLANYVTVLTDGYWWTAFAVTLGITVVSVAIEFALGLALALVMHRTIFGKGAV  118

Query  121  RTAVLIPYGIVTVVASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTT  180
            RTA+LIPYGIVTV ASYSWYYAWTPGTGYLANLLP  SAPLT Q+PSL IVV+AEVWKTT
Sbjct  119  RTAILIPYGIVTVAASYSWYYAWTPGTGYLANLLPEGSAPLTDQLPSLAIVVLAEVWKTT  178

Query  181  PFMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIF  240
            PFM+LLLLAGLALVP+DLL AAQVDGA  W+RLTKVILPMIKPAI+VALLFRTLDAFRIF
Sbjct  179  PFMALLLLAGLALVPQDLLNAAQVDGAGPWKRLTKVILPMIKPAILVALLFRTLDAFRIF  238

Query  241  DNIYVLTGGSNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAP  300
            DNIY+LTGGSN+TGSVSILGYDNLFK FNVGLGSAISVLIF  VA+IAFI+IK+FGAAAP
Sbjct  239  DNIYILTGGSNDTGSVSILGYDNLFKAFNVGLGSAISVLIFLSVAIIAFIYIKIFGAAAP  298

Query  301  GGEPSGR  307
            G +   R
Sbjct  299  GSDEEVR  305


>gi|111022952|ref|YP_705924.1| sugar ABC transporter permease [Rhodococcus jostii RHA1]
 gi|110822482|gb|ABG97766.1| ABC sugar transporter, permease component [Rhodococcus jostii 
RHA1]
Length=315

 Score =  434 bits (1117),  Expect = 7e-120, Method: Compositional matrix adjust.
 Identities = 221/289 (77%), Positives = 254/289 (88%), Gaps = 0/289 (0%)

Query  19   RMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILID  78
            + AERRL   LVAPAA+LMVAVTAYP+ YA+WLSLQR +L  P+D  F+GL NY ++L D
Sbjct  26   KKAERRLGLWLVAPAAILMVAVTAYPVVYAVWLSLQRYDLRFPDDRKFVGLANYVSVLSD  85

Query  79   RYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYS  138
             YWW A AVT+ IT VSV IEFVLGL LALVMHRTL+GKG+VRT VLIPYGIVTV A+YS
Sbjct  86   AYWWQAFAVTVGITVVSVVIEFVLGLILALVMHRTLVGKGIVRTVVLIPYGIVTVAAAYS  145

Query  139  WYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDL  198
            WYYAWTPGTGYLANLLP  SAPLTQQIPSL I+V+AEVWKTTPFM+LLLLAGLALVP+DL
Sbjct  146  WYYAWTPGTGYLANLLPDGSAPLTQQIPSLAIIVLAEVWKTTPFMALLLLAGLALVPDDL  205

Query  199  LRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSI  258
            L+AAQVDGA AW RL ++ILP++KPAI+VALLFRTLDAFRIFDNIYVLT G+N+TGS+SI
Sbjct  206  LKAAQVDGAGAWTRLVRIILPLMKPAILVALLFRTLDAFRIFDNIYVLTKGANDTGSLSI  265

Query  259  LGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR  307
            LGYDNLFK FN+G+GSAISVLIF CVA++AF+FIKLFGA+APG +  G 
Sbjct  266  LGYDNLFKAFNLGIGSAISVLIFLCVALLAFVFIKLFGASAPGSDTEGN  314


>gi|118619615|ref|YP_907947.1| sugar-transport integral membrane protein ABC transporter SugA 
[Mycobacterium ulcerans Agy99]
 gi|118571725|gb|ABL06476.1| sugar-transport integral membrane protein ABC transporter SugA 
[Mycobacterium ulcerans Agy99]
Length=345

 Score =  434 bits (1116),  Expect = 9e-120, Method: Compositional matrix adjust.
 Identities = 215/248 (87%), Positives = 230/248 (93%), Gaps = 0/248 (0%)

Query  25   LAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILIDRYWWTA  84
            LAF LVAPA +LM+ V  YPIGYA+WLSLQRNNLATPN+T FIGLGNY TIL+DRYWWTA
Sbjct  16   LAFALVAPATILMLLVIGYPIGYAMWLSLQRNNLATPNETRFIGLGNYQTILVDRYWWTA  75

Query  85   LAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYSWYYAWT  144
            LAVT AIT VSV  EFVLGLALALVMHR+L+ KGLVRTAVL+PYGIVTVVASYSWYYAWT
Sbjct  76   LAVTAAITVVSVACEFVLGLALALVMHRSLVAKGLVRTAVLVPYGIVTVVASYSWYYAWT  135

Query  145  PGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDLLRAAQV  204
            PGTGYLANLLP   APLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLA+VPEDLL+AAQV
Sbjct  136  PGTGYLANLLPQGIAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLAMVPEDLLQAAQV  195

Query  205  DGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSILGYDNL  264
            DGA AWRRLTK+ILP+IKPA++VALLFRTLDAFRIFDNIYVLTGG N+T SVSILGYDNL
Sbjct  196  DGAGAWRRLTKIILPLIKPAVLVALLFRTLDAFRIFDNIYVLTGGDNDTASVSILGYDNL  255

Query  265  FKGFNVGL  272
            FKGFNVGL
Sbjct  256  FKGFNVGL  263


>gi|226307633|ref|YP_002767593.1| ABC transporter permease protein [Rhodococcus erythropolis PR4]
 gi|226186750|dbj|BAH34854.1| putative ABC transporter permease protein [Rhodococcus erythropolis 
PR4]
Length=321

 Score =  431 bits (1107),  Expect = 9e-119, Method: Compositional matrix adjust.
 Identities = 222/306 (73%), Positives = 256/306 (84%), Gaps = 0/306 (0%)

Query  2    TSVEQRTATAVFSRTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATP  61
            T   +   +A    +  + AERRL   LVAPAA+LM+AVTAYP+ YA+WLSLQR +L  P
Sbjct  16   TPSPESKHSAKSKMSDGKAAERRLGLWLVAPAAILMIAVTAYPVVYAVWLSLQRYDLRFP  75

Query  62   NDTAFIGLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVR  121
            +   F+   NY ++L D YWW A AVT +IT VSV IEFVLGL +ALVMHRT++GKGLVR
Sbjct  76   DQRKFVWFDNYVSVLTDGYWWQAFAVTTSITVVSVVIEFVLGLTIALVMHRTIVGKGLVR  135

Query  122  TAVLIPYGIVTVVASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTP  181
            T VLIPYGIVTV A+YSWYYAWTPGTGYLANLLP  SAPLT QIPSL I+V+AEVWKTTP
Sbjct  136  TVVLIPYGIVTVAAAYSWYYAWTPGTGYLANLLPDGSAPLTDQIPSLAIIVLAEVWKTTP  195

Query  182  FMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFD  241
            FM+LLLLAGLALVP+DLL+AAQVDGA AW RL ++ILP++KPAI+VALLFRTLDAFRIFD
Sbjct  196  FMALLLLAGLALVPDDLLKAAQVDGAGAWTRLVRIILPLMKPAILVALLFRTLDAFRIFD  255

Query  242  NIYVLTGGSNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPG  301
            NIYVLT G+N+TGSVSILGYDNLFK FN+G+GSAISVLIF CVAVIAFIFIKLFGA+APG
Sbjct  256  NIYVLTKGANDTGSVSILGYDNLFKAFNLGIGSAISVLIFVCVAVIAFIFIKLFGASAPG  315

Query  302  GEPSGR  307
             +  GR
Sbjct  316  SDTEGR  321


>gi|229493745|ref|ZP_04387527.1| ABC sugar transporter, permease component [Rhodococcus erythropolis 
SK121]
 gi|229319345|gb|EEN85184.1| ABC sugar transporter, permease component [Rhodococcus erythropolis 
SK121]
Length=321

 Score =  430 bits (1105),  Expect = 1e-118, Method: Compositional matrix adjust.
 Identities = 222/306 (73%), Positives = 256/306 (84%), Gaps = 0/306 (0%)

Query  2    TSVEQRTATAVFSRTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATP  61
            T   +   +A    +  + AERRL   LVAPAA+LM+AVTAYP+ YA+WLSLQR +L  P
Sbjct  16   TPSPEPKHSAKSKMSDGKAAERRLGLWLVAPAAILMIAVTAYPVVYAVWLSLQRYDLRFP  75

Query  62   NDTAFIGLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVR  121
            +   F+   NY ++L D YWW A AVT +IT VSV IEFVLGL +ALVMHRT++GKGLVR
Sbjct  76   DQRKFVWFDNYVSVLTDGYWWQAFAVTTSITVVSVVIEFVLGLTIALVMHRTIVGKGLVR  135

Query  122  TAVLIPYGIVTVVASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTP  181
            T VLIPYGIVTV A+YSWYYAWTPGTGYLANLLP  SAPLT QIPSL I+V+AEVWKTTP
Sbjct  136  TVVLIPYGIVTVAAAYSWYYAWTPGTGYLANLLPDGSAPLTDQIPSLAIIVLAEVWKTTP  195

Query  182  FMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFD  241
            FM+LLLLAGLALVP+DLL+AAQVDGA AW RL ++ILP++KPAI+VALLFRTLDAFRIFD
Sbjct  196  FMALLLLAGLALVPDDLLKAAQVDGAGAWTRLVRIILPLMKPAILVALLFRTLDAFRIFD  255

Query  242  NIYVLTGGSNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPG  301
            NIYVLT G+N+TGSVSILGYDNLFK FN+G+GSAISVLIF CVAVIAFIFIKLFGA+APG
Sbjct  256  NIYVLTKGANDTGSVSILGYDNLFKAFNLGIGSAISVLIFVCVAVIAFIFIKLFGASAPG  315

Query  302  GEPSGR  307
             +  GR
Sbjct  316  SDTEGR  321


>gi|296138927|ref|YP_003646170.1| binding-protein-dependent transporters inner membrane component 
[Tsukamurella paurometabola DSM 20162]
 gi|296027061|gb|ADG77831.1| binding-protein-dependent transport systems inner membrane component 
[Tsukamurella paurometabola DSM 20162]
Length=310

 Score =  414 bits (1065),  Expect = 7e-114, Method: Compositional matrix adjust.
 Identities = 212/306 (70%), Positives = 256/306 (84%), Gaps = 2/306 (0%)

Query  2    TSVEQRTATAVFSRTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATP  61
            T+  +R   A  S  G R AE+RL  ML+APAA++M+AVTAYPI YA WLSLQ+++LA P
Sbjct  6    TATVERIEPAPASE-GQR-AEKRLGLMLIAPAAIVMLAVTAYPIIYAFWLSLQKSSLAAP  63

Query  62   NDTAFIGLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVR  121
                F+GLGNY T+L D YWW AL +T  IT VSV IEFVLG+A+ALVMHRT++GKG+VR
Sbjct  64   GQDEFVGLGNYATVLQDGYWWQALGMTTLITVVSVVIEFVLGMAIALVMHRTIVGKGVVR  123

Query  122  TAVLIPYGIVTVVASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTP  181
            T VLIPYGIVTVVA++SW+YAWTP TGYLANLLP  +APLT+Q PS+ ++++AEVWKTTP
Sbjct  124  TVVLIPYGIVTVVAAFSWFYAWTPDTGYLANLLPDGTAPLTEQRPSVAVIILAEVWKTTP  183

Query  182  FMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFD  241
            FM+LLLL+GLALVP+DLL+AA +DGA  W RLTK+I+P++KPAI+VALLFRTLDAFRIFD
Sbjct  184  FMALLLLSGLALVPDDLLKAAALDGAGPWTRLTKIIIPLMKPAILVALLFRTLDAFRIFD  243

Query  242  NIYVLTGGSNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPG  301
            NIY+LT GSN TGSVSILGYDNLFK FN+G+GSAISVLIF CVA+IAFIF+K FG A PG
Sbjct  244  NIYILTNGSNGTGSVSILGYDNLFKAFNLGVGSAISVLIFICVAIIAFIFVKAFGTAVPG  303

Query  302  GEPSGR  307
             +   R
Sbjct  304  ADSDDR  309


>gi|226365458|ref|YP_002783241.1| ABC transporter permease protein [Rhodococcus opacus B4]
 gi|226243948|dbj|BAH54296.1| putative ABC transporter permease protein [Rhodococcus opacus 
B4]
Length=315

 Score =  413 bits (1061),  Expect = 2e-113, Method: Compositional matrix adjust.
 Identities = 219/288 (77%), Positives = 254/288 (89%), Gaps = 0/288 (0%)

Query  19   RMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILID  78
            + AERRL   LVAPAA+LM+AVTAYP+ YA+WLSLQR +L  P++  F+GL NY ++L D
Sbjct  26   KRAERRLGLWLVAPAAILMIAVTAYPVVYAVWLSLQRYDLRFPDERKFVGLANYVSVLTD  85

Query  79   RYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYS  138
             YWW A  VT++IT VSV IEFVLGL LALVMHRTL+GKGLVRT VLIPYGIVTV A+YS
Sbjct  86   GYWWQAFWVTVSITVVSVVIEFVLGLILALVMHRTLVGKGLVRTVVLIPYGIVTVAAAYS  145

Query  139  WYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDL  198
            WYYAWTPGTGYLANLLP  SAPLTQQIPSL I+V+AEVWKTTPFM+LLLLAGLALVP+DL
Sbjct  146  WYYAWTPGTGYLANLLPDGSAPLTQQIPSLAIIVLAEVWKTTPFMALLLLAGLALVPDDL  205

Query  199  LRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSI  258
            L+AAQVDGA AW RL ++ILP++KPAI+VALLFRTLDAFRIFDNIYVLT G+N+TGS+SI
Sbjct  206  LKAAQVDGAGAWTRLVRIILPLMKPAILVALLFRTLDAFRIFDNIYVLTKGANDTGSLSI  265

Query  259  LGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSG  306
            LGYDNLFK FN+G+GSAISVLIF CVA++AF+FIKLFGA+APG +  G
Sbjct  266  LGYDNLFKAFNLGIGSAISVLIFLCVALLAFVFIKLFGASAPGSDTEG  313


>gi|326382046|ref|ZP_08203739.1| binding-protein-dependent transporter inner membrane component 
[Gordonia neofelifaecis NRRL B-59395]
 gi|326199472|gb|EGD56653.1| binding-protein-dependent transporter inner membrane component 
[Gordonia neofelifaecis NRRL B-59395]
Length=433

 Score =  409 bits (1050),  Expect = 4e-112, Method: Compositional matrix adjust.
 Identities = 210/292 (72%), Positives = 247/292 (85%), Gaps = 0/292 (0%)

Query  16   TGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTI  75
            TG + +ER+LA+ L+APAA++M  VT YPI YA WLSL +  L  P+D  FI   NY T+
Sbjct  142  TGRKSSERKLAYWLIAPAAIVMALVTGYPIVYAFWLSLNKATLTAPDDQQFIWFSNYATV  201

Query  76   LIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVA  135
            L D YWW+AL VT+ IT VSV IE VLG+A+ALVMHRT+ G+G VRT VLIPYGIVTV A
Sbjct  202  LSDGYWWSALGVTVFITLVSVLIELVLGMAIALVMHRTIFGRGTVRTVVLIPYGIVTVAA  261

Query  136  SYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVP  195
            ++SWYYAWTPGTGYLANLLP  SAPLTQQ PSL I+++AEVWKTTPFM+LLLLAGLALVP
Sbjct  262  AFSWYYAWTPGTGYLANLLPDGSAPLTQQWPSLFIIILAEVWKTTPFMALLLLAGLALVP  321

Query  196  EDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGS  255
            +DLL+AAQ+DGA AW RL ++ILP++KPAI+VALLFRTLDAFRIFDNIYVLT GSN TGS
Sbjct  322  DDLLKAAQLDGAGAWTRLFRIILPLMKPAILVALLFRTLDAFRIFDNIYVLTAGSNGTGS  381

Query  256  VSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR  307
            VS+LGYDNLFK FN+G+GSAIS+LIF CVA+IAF+FIK FGAAAPG +  GR
Sbjct  382  VSMLGYDNLFKAFNLGVGSAISILIFVCVAIIAFVFIKGFGAAAPGSDDEGR  433


>gi|262201808|ref|YP_003273016.1| binding-protein-dependent transporter inner membrane component 
[Gordonia bronchialis DSM 43247]
 gi|262085155|gb|ACY21123.1| binding-protein-dependent transport systems inner membrane component 
[Gordonia bronchialis DSM 43247]
Length=388

 Score =  408 bits (1049),  Expect = 5e-112, Method: Compositional matrix adjust.
 Identities = 213/303 (71%), Positives = 252/303 (84%), Gaps = 1/303 (0%)

Query  6    QRTATAVFSR-TGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDT  64
            + + TA   R +  + AERRLAF LVAPAA++M+ VT YPI YA+WLSL + +L+ P + 
Sbjct  86   EDSGTAKGGRVSDGKSAERRLAFWLVAPAAIMMLLVTGYPILYAVWLSLNKASLSAPGER  145

Query  65   AFIGLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAV  124
             F+  GNY T+L D YWWTA +VTL IT VSV IE VLG+A+ALVMHRT+ GKG +RT V
Sbjct  146  EFVWFGNYITVLTDSYWWTAFSVTLGITIVSVIIELVLGMAIALVMHRTIFGKGTIRTVV  205

Query  125  LIPYGIVTVVASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMS  184
            LIPYGIVTV A++SWYYAWTP TGYLANLLP  SAPLT+Q PSL I+V+AEVWKTTPFM+
Sbjct  206  LIPYGIVTVAAAFSWYYAWTPDTGYLANLLPDGSAPLTEQWPSLAIIVLAEVWKTTPFMA  265

Query  185  LLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIY  244
            LLLLAGLALVP+DLL+AAQVDGA AW RL ++I+P++KPAI+VALLFRTLDAFRIFDNIY
Sbjct  266  LLLLAGLALVPDDLLKAAQVDGAGAWTRLWRIIIPLMKPAILVALLFRTLDAFRIFDNIY  325

Query  245  VLTGGSNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEP  304
            VLT G+NNT SVSILGYDNLF  FN+G+GSAIS+LIF CVA+IAFIFIK FG AAPG + 
Sbjct  326  VLTSGNNNTFSVSILGYDNLFGAFNLGVGSAISILIFLCVAIIAFIFIKGFGTAAPGTDD  385

Query  305  SGR  307
             GR
Sbjct  386  EGR  388


>gi|343928020|ref|ZP_08767485.1| putative ABC transporter permease protein [Gordonia alkanivorans 
NBRC 16433]
 gi|343762028|dbj|GAA14411.1| putative ABC transporter permease protein [Gordonia alkanivorans 
NBRC 16433]
Length=406

 Score =  407 bits (1047),  Expect = 8e-112, Method: Compositional matrix adjust.
 Identities = 208/294 (71%), Positives = 247/294 (85%), Gaps = 0/294 (0%)

Query  14   SRTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYH  73
             R+  + AERRLAF LVAPAA++M+ VT YPI YA+WLSL + +L+ P +  F+   NY 
Sbjct  113  KRSEGKTAERRLAFWLVAPAALMMLLVTGYPIIYAVWLSLNKMSLSAPGEREFVWFSNYA  172

Query  74   TILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTV  133
            T+L D YWWTA  VT+ IT VSV IE VLG+A+ALVMHRT+ G+G +RT VLIPYGIVTV
Sbjct  173  TVLTDNYWWTAFGVTVGITVVSVLIELVLGMAIALVMHRTIFGRGTIRTVVLIPYGIVTV  232

Query  134  VASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLAL  193
             A++SWYYAWTPGTGYLANLLP  SAPLT+Q PSL I+V+AEVWKTTPFM+LLLLAGLAL
Sbjct  233  AAAFSWYYAWTPGTGYLANLLPDGSAPLTEQWPSLAIIVLAEVWKTTPFMALLLLAGLAL  292

Query  194  VPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNT  253
            VP+DLL+AAQVDGA AW RL ++ILP++KPAI+VALLFRTLDAFR+FDNIYVLT GSNNT
Sbjct  293  VPDDLLKAAQVDGAGAWTRLWRIILPLMKPAILVALLFRTLDAFRVFDNIYVLTSGSNNT  352

Query  254  GSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR  307
             SVS+LGYDNLF  FN+G+GSAIS+LIF CVA+IAF+FIK FG AAPG +  GR
Sbjct  353  YSVSMLGYDNLFGAFNLGVGSAISILIFICVAIIAFVFIKGFGTAAPGSDDEGR  406


>gi|169628464|ref|YP_001702113.1| sugar ABC transporter permease SugA [Mycobacterium abscessus 
ATCC 19977]
 gi|169240431|emb|CAM61459.1| Probable sugar ABC transporter, permease protein SugA [Mycobacterium 
abscessus]
Length=300

 Score =  391 bits (1004),  Expect = 9e-107, Method: Compositional matrix adjust.
 Identities = 225/298 (76%), Positives = 257/298 (87%), Gaps = 4/298 (1%)

Query  14   SRTGS--RMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGN  71
             RT S  + AERRL  +L+APAA+LM+AVTAYPI YA+WLS+Q+ + A+P D  F+   N
Sbjct  3    DRTSSEGKRAERRLGLLLIAPAALLMLAVTAYPICYAIWLSVQKYSFASPQDRKFVWFDN  62

Query  72   YHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIV  131
            Y T+L DRYWW+AL VTL IT +SV IE VLGLALALVMHRT+ G+G+VRTAVLIPYGIV
Sbjct  63   YITVLSDRYWWSALVVTLVITVISVLIELVLGLALALVMHRTIFGRGVVRTAVLIPYGIV  122

Query  132  TVVASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGL  191
            TV ASYSWYYAWTPGTGYLANLLP  SAPLTQQIPSL +V++AEVWKTTPFM+LLLLAGL
Sbjct  123  TVAASYSWYYAWTPGTGYLANLLPAGSAPLTQQIPSLAVVILAEVWKTTPFMALLLLAGL  182

Query  192  ALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSN  251
            ALVP+DLL+AAQVDGA+ W RL +V +P++KPAI+VALLFRTLDAFRIFDNIYVLTGGSN
Sbjct  183  ALVPDDLLKAAQVDGANGWSRLIRVTVPIMKPAILVALLFRTLDAFRIFDNIYVLTGGSN  242

Query  252  NTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAP--GGEPSGR  307
            NTGSVSILGYDNLFK FNVGLGSAISVLIF CVA+IA IFIK FGA+AP   GE + R
Sbjct  243  NTGSVSILGYDNLFKAFNVGLGSAISVLIFLCVAIIAVIFIKGFGASAPTTDGEEARR  300


>gi|257054716|ref|YP_003132548.1| carbohydrate ABC transporter membrane protein [Saccharomonospora 
viridis DSM 43017]
 gi|256584588|gb|ACU95721.1| carbohydrate ABC transporter membrane protein [Saccharomonospora 
viridis DSM 43017]
Length=321

 Score =  389 bits (1000),  Expect = 2e-106, Method: Compositional matrix adjust.
 Identities = 196/289 (68%), Positives = 244/289 (85%), Gaps = 0/289 (0%)

Query  19   RMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILID  78
            + AERRL  +LVAPAA++M+AVT YPI Y++WLSLQR +L  P+D  F+   NY  +L +
Sbjct  32   KRAERRLGLLLVAPAAIVMLAVTGYPILYSVWLSLQRYDLRFPDDREFVWFANYAAVLTN  91

Query  79   RYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYS  138
             YWWTA  VT+ IT VSV IEFVLG+ALAL+MHRTL+G+GLVRT  LIPYGIVTVVA++S
Sbjct  92   SYWWTAFGVTMLITVVSVAIEFVLGMALALIMHRTLVGRGLVRTVTLIPYGIVTVVAAFS  151

Query  139  WYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDL  198
            W+YAWTPGTGYLAN L   SAPLT+Q  SL I+++AEVWKTTPFM+LLL+AGLALVPEDL
Sbjct  152  WFYAWTPGTGYLANALTPGSAPLTEQGSSLAIIILAEVWKTTPFMALLLMAGLALVPEDL  211

Query  199  LRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSI  258
            L+AA +DGA+AW+R TKV+LP++KPAI+VALLFRTLDAFR+FDNI+VLTGG+N+T SVS+
Sbjct  212  LKAASMDGANAWQRFTKVMLPVMKPAILVALLFRTLDAFRVFDNIFVLTGGANDTSSVSM  271

Query  259  LGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR  307
              Y+NL KG N+G+GS ++VLIF  VA+IAFIFIK+FG AAPG +  G+
Sbjct  272  QTYNNLMKGLNLGIGSTMAVLIFIAVAIIAFIFIKVFGTAAPGSDQEGK  320


>gi|331694915|ref|YP_004331154.1| ABC transporter integral membrane subunit [Pseudonocardia dioxanivorans 
CB1190]
 gi|326949604|gb|AEA23301.1| ABC-type transporter, integral membrane subunit [Pseudonocardia 
dioxanivorans CB1190]
Length=319

 Score =  388 bits (996),  Expect = 8e-106, Method: Compositional matrix adjust.
 Identities = 203/289 (71%), Positives = 243/289 (85%), Gaps = 0/289 (0%)

Query  19   RMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILID  78
            + AERRL   L APAA++MVAVTAYPI YA+WLSLQR +L  P +  F GL NY  +L  
Sbjct  30   KKAERRLGLWLCAPAAIIMVAVTAYPIIYAIWLSLQRYDLRFPAEREFAGLSNYGAVLTS  89

Query  79   RYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYS  138
             YWW A  +T+ IT VSV IEFVLGLALALVMHRT++G+GL RT VLIPYGIVTVVA++S
Sbjct  90   AYWWQAFLITVIITVVSVAIEFVLGLALALVMHRTIVGRGLTRTVVLIPYGIVTVVAAFS  149

Query  139  WYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDL  198
            W +AWTP  GYLA +L   SAPLT Q  ++ I+++AEVWKTTPFM+LLL+AGLALVP+DL
Sbjct  150  WQFAWTPDKGYLAAMLSEGSAPLTGQASAIAIIILAEVWKTTPFMALLLMAGLALVPDDL  209

Query  199  LRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSI  258
            L+AAQVDGA AW+RLT++ILPM+KPAI+VALLFRTLDAFR+FDNIY+LT GSN TGSVS+
Sbjct  210  LKAAQVDGAGAWQRLTQIILPMMKPAILVALLFRTLDAFRVFDNIYILTQGSNGTGSVSM  269

Query  259  LGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR  307
            LGYDNLFK FN+G+GSAISVLIF  VA+IA +FIK+FGAAAPG EP+G+
Sbjct  270  LGYDNLFKAFNLGIGSAISVLIFVAVALIALLFIKIFGAAAPGSEPTGK  318


>gi|317508230|ref|ZP_07965910.1| inner membrane transporter [Segniliparus rugosus ATCC BAA-974]
 gi|316253405|gb|EFV12795.1| inner membrane transporter [Segniliparus rugosus ATCC BAA-974]
Length=287

 Score =  387 bits (994),  Expect = 1e-105, Method: Compositional matrix adjust.
 Identities = 190/284 (67%), Positives = 232/284 (82%), Gaps = 0/284 (0%)

Query  20   MAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILIDR  79
            M   R  + LVAPA  LM+ V AYP+ +ALWLS QR   + P D AF+GL NY  +L D+
Sbjct  1    MTSTRRGWFLVAPALALMLLVGAYPVAHALWLSTQRYRFSQPGDRAFVGLANYQAVLADQ  60

Query  80   YWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYSW  139
            YWW AL VT  IT VSV +EFVLGLALAL+MHRTL+GK LVRT VLIPYG+VTVV++YSW
Sbjct  61   YWWHALWVTALITVVSVALEFVLGLALALLMHRTLVGKSLVRTLVLIPYGLVTVVSAYSW  120

Query  140  YYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDLL  199
             YAWTPGTGYLANLLP  SAPLTQQ  ++ +V++AEVWKT+PFMSLLLL GLA VP+D++
Sbjct  121  LYAWTPGTGYLANLLPQGSAPLTQQASAIAVVILAEVWKTSPFMSLLLLTGLAQVPQDMM  180

Query  200  RAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSIL  259
             AAQ+DGA A  RL +VILP ++PAI+VALLFRT+DAFR+FD+IYV+T G++ TGSVS+L
Sbjct  181  DAAQMDGAGAATRLFRVILPAMRPAIMVALLFRTVDAFRVFDSIYVMTKGASGTGSVSLL  240

Query  260  GYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGE  303
            GYDNLF  FN+G+GSAISVL+F CVA+I  +F+K+FGAAAPG E
Sbjct  241  GYDNLFLAFNLGVGSAISVLVFVCVALIVAVFMKVFGAAAPGME  284


>gi|213966432|ref|ZP_03394609.1| ABC sugar transporter, permease component [Corynebacterium amycolatum 
SK46]
 gi|213950925|gb|EEB62330.1| ABC sugar transporter, permease component [Corynebacterium amycolatum 
SK46]
Length=305

 Score =  385 bits (988),  Expect = 6e-105, Method: Compositional matrix adjust.
 Identities = 195/285 (69%), Positives = 239/285 (84%), Gaps = 0/285 (0%)

Query  16   TGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTI  75
            +  R AERRL  +LVAPA +LM+AVTAYPIGYA+WLSLQR +L  P+D  FIGL NY ++
Sbjct  13   SDGRRAERRLGLLLVAPALILMLAVTAYPIGYAIWLSLQRYDLRFPDDREFIGLQNYASV  72

Query  76   LIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVA  135
            L   YWW AL VT  IT VSV +E VLG+A+A+VM+R + G+GL+RT VLIPYGIVTV A
Sbjct  73   LTSSYWWEALGVTAFITLVSVAVELVLGMAIAMVMYRAIFGRGLIRTVVLIPYGIVTVAA  132

Query  136  SYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVP  195
            +YSW YAWTPGTGYLANLLP  +APLT+Q PS+ I++ AE+WKTTPFM+LLLLAGLALVP
Sbjct  133  AYSWNYAWTPGTGYLANLLPDGTAPLTEQWPSIFIIIGAEIWKTTPFMALLLLAGLALVP  192

Query  196  EDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGS  255
            +D L+AA++DGA  W+R  K+ LP++KP+IVVALLFRTLDAFR+FDNIY+LT G+N TGS
Sbjct  193  DDALKAAELDGAGFWQRFFKITLPLMKPSIVVALLFRTLDAFRVFDNIYILTKGNNGTGS  252

Query  256  VSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAP  300
            VSILGY+NLFK FN+G+GSAISVLIF CVA+IA +F+K FGA +P
Sbjct  253  VSILGYNNLFKAFNLGIGSAISVLIFVCVALIAIVFVKGFGATSP  297


>gi|300783009|ref|YP_003763300.1| sugar ABC transporter permease [Amycolatopsis mediterranei U32]
 gi|299792523|gb|ADJ42898.1| permease component of ABC-type sugar transport system [Amycolatopsis 
mediterranei U32]
 gi|340524386|gb|AEK39591.1| sugar ABC transporter permease [Amycolatopsis mediterranei S699]
Length=323

 Score =  382 bits (982),  Expect = 3e-104, Method: Compositional matrix adjust.
 Identities = 195/289 (68%), Positives = 237/289 (83%), Gaps = 0/289 (0%)

Query  19   RMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILID  78
            + AERRL   L APA ++M+AVT YPI Y++WLSLQR +L  P    F+G  NY  +L  
Sbjct  34   KKAERRLGLWLCAPAFIVMIAVTGYPILYSVWLSLQRYDLRFPAQQQFVGFDNYAAVLSS  93

Query  79   RYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYS  138
             YWWTA   T+ +T VSV IEFVLG+ALAL+MHRTL+G+GLVRT  LIPYGIVTVVA++S
Sbjct  94   SYWWTAFGTTMLLTVVSVAIEFVLGMALALIMHRTLVGRGLVRTVALIPYGIVTVVAAFS  153

Query  139  WYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDL  198
            WYYAWTP TGYLAN L  D+APLT+Q PSL I++ AEVWKTTPFM+LLL+AGLALVP+DL
Sbjct  154  WYYAWTPKTGYLANFLAADAAPLTEQWPSLFIIIGAEVWKTTPFMALLLMAGLALVPDDL  213

Query  199  LRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSI  258
            L+AA +DGASAW+R TKV+LP++KPAI+VALLFRTLDAFRIFDNIYVLT G+ +TGSVS+
Sbjct  214  LKAAAMDGASAWQRFTKVMLPVMKPAILVALLFRTLDAFRIFDNIYVLTNGAQDTGSVSM  273

Query  259  LGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR  307
              YDNL KG N+G+GS ++VLIF  VA+IAFIFIK+FG AAPG +  G+
Sbjct  274  QTYDNLVKGLNLGIGSTMAVLIFITVAIIAFIFIKVFGTAAPGSDNGGK  322


>gi|238060005|ref|ZP_04604714.1| ABC sugar transporter permease component [Micromonospora sp. 
ATCC 39149]
 gi|237881816|gb|EEP70644.1| ABC sugar transporter permease component [Micromonospora sp. 
ATCC 39149]
Length=319

 Score =  380 bits (975),  Expect = 2e-103, Method: Compositional matrix adjust.
 Identities = 191/290 (66%), Positives = 240/290 (83%), Gaps = 1/290 (0%)

Query  18   SRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILI  77
            ++ AER+L ++L APAA++MV VTAYPIGY++WLSLQR +L  P+   FIGL NY T+L 
Sbjct  30   NKRAERKLGWLLCAPAALVMVLVTAYPIGYSIWLSLQRYDLRFPDQREFIGLENYVTVLT  89

Query  78   DRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASY  137
            + +WWTA  VT+ IT V+V +E  LG+ LAL+MHRTL+G+G+VRTA LIPYGIVTVVA++
Sbjct  90   NEFWWTAFGVTMLITVVTVAVELALGMGLALIMHRTLVGRGIVRTAALIPYGIVTVVAAF  149

Query  138  SWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPED  197
            SW YAWTPGTGYLANL   D APLT++  SL IV++AE+WKTTPFM+LLL+AGLALVPED
Sbjct  150  SWRYAWTPGTGYLANLFS-DGAPLTERASSLAIVMLAEIWKTTPFMALLLMAGLALVPED  208

Query  198  LLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVS  257
            LL+AA  DGA+AW+R T+V+LP++KPAI+VALLFRTLDAFR+FDNIYVLT G N T SVS
Sbjct  209  LLKAASTDGATAWQRFTRVMLPVMKPAILVALLFRTLDAFRVFDNIYVLTAGGNETSSVS  268

Query  258  ILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR  307
            +L Y+NL +G N+G+GS +SVLIF  VA IAF+F+KLFG AAPG +   R
Sbjct  269  MLAYNNLIRGLNLGIGSTMSVLIFLTVAAIAFVFVKLFGTAAPGSDDGER  318


>gi|296394485|ref|YP_003659369.1| binding-protein-dependent transporter inner membrane component 
[Segniliparus rotundus DSM 44985]
 gi|296181632|gb|ADG98538.1| binding-protein-dependent transport systems inner membrane component 
[Segniliparus rotundus DSM 44985]
Length=287

 Score =  379 bits (974),  Expect = 2e-103, Method: Compositional matrix adjust.
 Identities = 186/284 (66%), Positives = 226/284 (80%), Gaps = 0/284 (0%)

Query  20   MAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILIDR  79
            M   R  + LVAPA +L++ V AYP+ +ALWLS QR   + P D AF+G  NY  +L D+
Sbjct  1    MTSTRRGWFLVAPACVLLMCVGAYPVAHALWLSTQRYRFSQPGDRAFVGFANYEAVLSDQ  60

Query  80   YWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYSW  139
            YWW AL VT+ IT VSV  EFVLGLALAL+MHRTL+GK LVRT VLIPYG+VTVV++YSW
Sbjct  61   YWWRALWVTVLITVVSVAFEFVLGLALALLMHRTLVGKSLVRTLVLIPYGMVTVVSAYSW  120

Query  140  YYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDLL  199
             YAWTPGTGYLANLLP  SAPLTQQ  S+  +++AEVWKT+PFMSLLLL GLA VP+D+ 
Sbjct  121  LYAWTPGTGYLANLLPQGSAPLTQQGTSIAAIILAEVWKTSPFMSLLLLTGLAQVPQDMT  180

Query  200  RAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSIL  259
             AAQ+DGA A  RL +V+LP +KPAI+VALLFR +DAFR+FDNIYV+T G+  TGSVS+L
Sbjct  181  DAAQMDGAGALTRLFRVVLPAMKPAIMVALLFRAVDAFRVFDNIYVMTKGAAGTGSVSLL  240

Query  260  GYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGE  303
            GYDNLF  FN G GSAISVL+F CVA+I  +F+++FGA+APG E
Sbjct  241  GYDNLFLAFNFGTGSAISVLVFVCVALIVAVFMRIFGASAPGLE  284


>gi|291435775|ref|ZP_06575165.1| ABC sugar transporter [Streptomyces ghanaensis ATCC 14672]
 gi|291338670|gb|EFE65626.1| ABC sugar transporter [Streptomyces ghanaensis ATCC 14672]
Length=319

 Score =  379 bits (974),  Expect = 3e-103, Method: Compositional matrix adjust.
 Identities = 200/287 (70%), Positives = 237/287 (83%), Gaps = 1/287 (0%)

Query  17   GSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTIL  76
            G+R  ERRL ++L APA ++MVAVTAYPIGYA++LSLQR +L  P    F+GL NY  +L
Sbjct  31   GARQ-ERRLGWLLCAPAVLVMVAVTAYPIGYAVYLSLQRYDLRFPARAEFVGLSNYGAVL  89

Query  77   IDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVAS  136
               YWW A  VTL +T VSV IE VLG+ LALVMHRTL  +G VRTAVLIPYGIVTVVA+
Sbjct  90   SSPYWWDAFWVTLFLTVVSVAIELVLGMGLALVMHRTLFWRGTVRTAVLIPYGIVTVVAA  149

Query  137  YSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPE  196
            +SW YAWTP  GYLA LLP   APLT+Q P+L ++V+AEVWKTTPFM+LLLLAGLALVPE
Sbjct  150  FSWQYAWTPELGYLAELLPSGEAPLTEQWPALWLIVLAEVWKTTPFMALLLLAGLALVPE  209

Query  197  DLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSV  256
            + L+AA VDGA+AW+R TKV+LP++KPAI+VALLFRTLDAFRIFDNIYVLT G++ TGS+
Sbjct  210  ETLKAAMVDGATAWQRFTKVVLPLMKPAILVALLFRTLDAFRIFDNIYVLTAGAHGTGSL  269

Query  257  SILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGE  303
            SILGY+NLF   N+G+GSAISVLIF CV +IAF F+KLFGAAAPG E
Sbjct  270  SILGYNNLFTALNLGIGSAISVLIFLCVGIIAFTFVKLFGAAAPGAE  316


>gi|330468991|ref|YP_004406734.1| binding-protein-dependent transport systems inner membrane component 
[Verrucosispora maris AB-18-032]
 gi|328811962|gb|AEB46134.1| binding-protein-dependent transport systems inner membrane component 
[Verrucosispora maris AB-18-032]
Length=333

 Score =  379 bits (973),  Expect = 3e-103, Method: Compositional matrix adjust.
 Identities = 189/290 (66%), Positives = 242/290 (84%), Gaps = 1/290 (0%)

Query  18   SRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILI  77
            ++ AERRL  +L APAA++M+AVTAYPI Y++WLSLQR +L  P +  F+GL NY T+L 
Sbjct  44   NKRAERRLGLLLCAPAALVMLAVTAYPILYSVWLSLQRYDLRFPAEREFVGLQNYVTVLT  103

Query  78   DRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASY  137
            + +WWTA  VT+ IT V+V +E VLG+ LAL+MHRTL+G+G+VRT+ LIPYGIVTVVA++
Sbjct  104  NEFWWTAFGVTMLITVVTVAVELVLGMGLALIMHRTLVGRGIVRTSALIPYGIVTVVAAF  163

Query  138  SWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPED  197
            SW YAWTPGTGYLANL   D APLT++  SL I+++AE+WKTTPFM+LLL+AGLALVPED
Sbjct  164  SWRYAWTPGTGYLANLFS-DGAPLTERASSLAIIMLAEIWKTTPFMALLLMAGLALVPED  222

Query  198  LLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVS  257
            LL+AA  DGA+AW+R TKV+LP++KPAI+VALLFRTLDAFR+FDNIYVLT G+N T SVS
Sbjct  223  LLKAASTDGATAWQRFTKVMLPVMKPAILVALLFRTLDAFRVFDNIYVLTSGANETSSVS  282

Query  258  ILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR  307
            ++ Y+NL +G N+G+GS +SVLIF  VA+IAF+F+KLFG AAPG +   R
Sbjct  283  MIAYNNLIRGLNLGIGSTMSVLIFITVAIIAFVFVKLFGTAAPGSDDGER  332


>gi|302562112|ref|ZP_07314454.1| sugar ABC transporter, permease [Streptomyces griseoflavus Tu4000]
 gi|302479730|gb|EFL42823.1| sugar ABC transporter, permease [Streptomyces griseoflavus Tu4000]
Length=309

 Score =  379 bits (973),  Expect = 3e-103, Method: Compositional matrix adjust.
 Identities = 197/299 (66%), Positives = 241/299 (81%), Gaps = 1/299 (0%)

Query  5    EQRTATAVFSRTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDT  64
            + RT        G+R  ERRL ++L APA ++M AVTAYPIGYA++LSLQR +L  P+  
Sbjct  9    KDRTKGGRTPSAGARQ-ERRLGWLLCAPAVLVMTAVTAYPIGYAVYLSLQRYDLRFPDRA  67

Query  65   AFIGLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAV  124
             F+GL NY ++L   +WW A  VT+ +TAVSV +E VLG+ LALVMHRTL  +G VRTAV
Sbjct  68   EFVGLSNYGSVLSSPFWWDAFWVTVFLTAVSVAVELVLGMGLALVMHRTLFSRGTVRTAV  127

Query  125  LIPYGIVTVVASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMS  184
            LIPYGIVTVVA++SW YAWTP  GYLA LLP   APLT+Q P+L ++V+AEVWKTTPFM+
Sbjct  128  LIPYGIVTVVAAFSWQYAWTPELGYLAELLPSGDAPLTEQWPALWLIVLAEVWKTTPFMA  187

Query  185  LLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIY  244
            LLLLAGLALVPE+ L+AA VDGA++W+R  +V+LP++KPAI+VALLFRTLDAFRIFDNIY
Sbjct  188  LLLLAGLALVPEETLKAAMVDGATSWQRFLRVMLPLMKPAILVALLFRTLDAFRIFDNIY  247

Query  245  VLTGGSNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGE  303
            VLT G++ TGS+SILGYDNLF   N+G+GSAISVLIF CV +IAF F+KLFGAAAPG E
Sbjct  248  VLTSGAHGTGSLSILGYDNLFTALNLGIGSAISVLIFLCVGIIAFTFVKLFGAAAPGAE  306


>gi|302868630|ref|YP_003837267.1| binding-protein-dependent transport systems inner membrane component 
[Micromonospora aurantiaca ATCC 27029]
 gi|315504898|ref|YP_004083785.1| binding-protein-dependent transport systems inner membrane component 
[Micromonospora sp. L5]
 gi|302571489|gb|ADL47691.1| binding-protein-dependent transport systems inner membrane component 
[Micromonospora aurantiaca ATCC 27029]
 gi|315411517|gb|ADU09634.1| binding-protein-dependent transport systems inner membrane component 
[Micromonospora sp. L5]
Length=333

 Score =  377 bits (969),  Expect = 9e-103, Method: Compositional matrix adjust.
 Identities = 198/310 (64%), Positives = 246/310 (80%), Gaps = 14/310 (4%)

Query  5    EQRTATAVFSRTGSR-------MAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNN  57
            EQR      SR GSR        AERRL  +L APAA++MV VTAYPI Y++WLSLQR +
Sbjct  30   EQR------SRRGSRAPLSDNKRAERRLGLLLCAPAALVMVLVTAYPILYSVWLSLQRFD  83

Query  58   LATPNDTAFIGLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGK  117
            L  P++  F+GL NY T+L + +WWTA  VT  IT V+V +E VLG+ LAL+MHRTL+G+
Sbjct  84   LRFPDEREFVGLENYVTVLTNDFWWTAFGVTALITVVTVAVELVLGMGLALIMHRTLVGR  143

Query  118  GLVRTAVLIPYGIVTVVASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVW  177
            G+VRTA LIPYGIVTVVA++SW YAWTPGTGYLANL    SAPLT++  SL I+++AE+W
Sbjct  144  GIVRTAALIPYGIVTVVAAFSWRYAWTPGTGYLANLFD-GSAPLTERASSLAIIMLAEIW  202

Query  178  KTTPFMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAF  237
            KTTPFM+LLL+AGLALVPEDLL+AA  DGA+AW+R TKV+LP++KPAI+VALLFRTLDAF
Sbjct  203  KTTPFMALLLMAGLALVPEDLLKAASTDGATAWQRFTKVMLPVMKPAILVALLFRTLDAF  262

Query  238  RIFDNIYVLTGGSNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGA  297
            R+FDNI+VLT G N T SVS+L Y+NL +G N+G+GS +SVLIF  VA+IAF+F+KLFG 
Sbjct  263  RVFDNIFVLTNGGNETSSVSMLAYNNLIRGLNLGIGSTMSVLIFITVAIIAFVFVKLFGT  322

Query  298  AAPGGEPSGR  307
            AAPG +   R
Sbjct  323  AAPGSDDGER  332


>gi|291008814|ref|ZP_06566787.1| ABC sugar transporter, permease component [Saccharopolyspora 
erythraea NRRL 2338]
Length=313

 Score =  376 bits (965),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 193/289 (67%), Positives = 238/289 (83%), Gaps = 0/289 (0%)

Query  19   RMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILID  78
            + AERRL ++L APAA++MVAVT +PI YA+WLS QR +L  P+   F+GL NY T+L +
Sbjct  24   KKAERRLGWLLCAPAALVMVAVTGWPILYAVWLSFQRFDLKYPDQREFVGLENYVTVLTN  83

Query  79   RYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYS  138
             YWWTA  VTL IT VSV IEFVLG+ LAL+MHR L+G+GLVRT  LIPYGIVTVVA++S
Sbjct  84   GYWWTAFWVTLLITVVSVAIEFVLGMGLALIMHRALVGRGLVRTVSLIPYGIVTVVAAFS  143

Query  139  WYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDL  198
            W YAWTP TGYLANL   +SAPLT +  SL I+++AE+WKTTPFM+LLL+AGLALVP+DL
Sbjct  144  WRYAWTPDTGYLANLFAPESAPLTDRAGSLAIIILAEIWKTTPFMALLLMAGLALVPDDL  203

Query  199  LRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSI  258
            L+AA +DGA  W+R  KV+LP++KPAI+VALLFRTLDAFR+FDNI VLT GS +T SVS+
Sbjct  204  LKAAAMDGAGPWQRFVKVMLPVMKPAILVALLFRTLDAFRVFDNIVVLTSGSQDTSSVSV  263

Query  259  LGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR  307
            L Y+NL KG N+G+GS +SVLIF  VA+IAF+F+KLFGAAAPGG+  GR
Sbjct  264  LAYNNLIKGLNLGIGSTMSVLIFIAVALIAFLFVKLFGAAAPGGDDKGR  312


>gi|134097642|ref|YP_001103303.1| ABC sugar transporter, permease component [Saccharopolyspora 
erythraea NRRL 2338]
 gi|133910265|emb|CAM00378.1| ABC sugar transporter, permease component [Saccharopolyspora 
erythraea NRRL 2338]
Length=312

 Score =  375 bits (964),  Expect = 4e-102, Method: Compositional matrix adjust.
 Identities = 193/289 (67%), Positives = 238/289 (83%), Gaps = 0/289 (0%)

Query  19   RMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILID  78
            + AERRL ++L APAA++MVAVT +PI YA+WLS QR +L  P+   F+GL NY T+L +
Sbjct  23   KKAERRLGWLLCAPAALVMVAVTGWPILYAVWLSFQRFDLKYPDQREFVGLENYVTVLTN  82

Query  79   RYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYS  138
             YWWTA  VTL IT VSV IEFVLG+ LAL+MHR L+G+GLVRT  LIPYGIVTVVA++S
Sbjct  83   GYWWTAFWVTLLITVVSVAIEFVLGMGLALIMHRALVGRGLVRTVSLIPYGIVTVVAAFS  142

Query  139  WYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDL  198
            W YAWTP TGYLANL   +SAPLT +  SL I+++AE+WKTTPFM+LLL+AGLALVP+DL
Sbjct  143  WRYAWTPDTGYLANLFAPESAPLTDRAGSLAIIILAEIWKTTPFMALLLMAGLALVPDDL  202

Query  199  LRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSI  258
            L+AA +DGA  W+R  KV+LP++KPAI+VALLFRTLDAFR+FDNI VLT GS +T SVS+
Sbjct  203  LKAAAMDGAGPWQRFVKVMLPVMKPAILVALLFRTLDAFRVFDNIVVLTSGSQDTSSVSV  262

Query  259  LGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR  307
            L Y+NL KG N+G+GS +SVLIF  VA+IAF+F+KLFGAAAPGG+  GR
Sbjct  263  LAYNNLIKGLNLGIGSTMSVLIFIAVALIAFLFVKLFGAAAPGGDDKGR  311


>gi|302524364|ref|ZP_07276706.1| ABC sugar transporter [Streptomyces sp. AA4]
 gi|302433259|gb|EFL05075.1| ABC sugar transporter [Streptomyces sp. AA4]
Length=315

 Score =  373 bits (957),  Expect = 2e-101, Method: Compositional matrix adjust.
 Identities = 191/289 (67%), Positives = 236/289 (82%), Gaps = 0/289 (0%)

Query  19   RMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILID  78
            + AERRL   L APA ++M+AVT YPI Y++WLSLQR +L  P    FIG  NY  +L +
Sbjct  26   KKAERRLGLWLCAPAFVVMIAVTGYPIIYSVWLSLQRYDLRFPAKHEFIGFDNYAAVLTN  85

Query  79   RYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYS  138
             YWWTA   T+ +T VSV IEFVLG+ LAL+MHRTL+G+GLVRT  LIPYGIVTVVA++S
Sbjct  86   SYWWTAFGTTMFLTVVSVAIEFVLGMGLALIMHRTLVGRGLVRTVALIPYGIVTVVAAFS  145

Query  139  WYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDL  198
            WY+AWTP TGYLA+ L    APLT Q PSL I+++AEVWKTTPFM+LLL+AGLALVP+DL
Sbjct  146  WYFAWTPKTGYLASALGEGVAPLTDQWPSLFIIILAEVWKTTPFMALLLMAGLALVPDDL  205

Query  199  LRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSI  258
            L+AA +DGA+AW+R TKV+LP++KPAI+VALLFRTLDAFRIFDNIYVLTGG+ +TGSVS+
Sbjct  206  LKAAAMDGATAWQRFTKVMLPVMKPAILVALLFRTLDAFRIFDNIYVLTGGAQDTGSVSM  265

Query  259  LGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR  307
              YDNL KG N+G+GS ++VLIF  VA+IAF+FIK+FG AAPG +  G+
Sbjct  266  QTYDNLVKGLNLGIGSTMAVLIFITVAIIAFLFIKVFGTAAPGTDDGGK  314


>gi|312197858|ref|YP_004017919.1| sugar ABC transporter permease [Frankia sp. EuI1c]
 gi|311229194|gb|ADP82049.1| binding-protein-dependent transport systems inner membrane component 
[Frankia sp. EuI1c]
Length=343

 Score =  364 bits (934),  Expect = 1e-98, Method: Compositional matrix adjust.
 Identities = 192/287 (67%), Positives = 241/287 (84%), Gaps = 2/287 (0%)

Query  17   GSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTIL  76
            G+R AERRL + L APA ++++AVT YP+GYA++LSL R +L  P D+ FIGL NY T+L
Sbjct  56   GAR-AERRLGWALCAPAFLVILAVTGYPVGYAVYLSLHRYDLRFPQDSRFIGLANYGTVL  114

Query  77   IDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVAS  136
                WW ALAVT  IT ++V I+FVLG+ALALVMHR LIG+GLVRT +LIPYGIVTVVA+
Sbjct  115  GSSLWWQALAVTAIITVIAVAIQFVLGMALALVMHRALIGRGLVRTVILIPYGIVTVVAA  174

Query  137  YSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPE  196
            + W YAWTP TGYL+ L   DSAPLT Q+  +G++++AEVWKTTPFM+LLLLAGLALVPE
Sbjct  175  FGWRYAWTPDTGYLSGLF-GDSAPLTSQVWGIGVIILAEVWKTTPFMALLLLAGLALVPE  233

Query  197  DLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSV  256
            +LLRAA+VDGA+AW+RLT+V+LP++KPAI+VA+LFR LD+FRIFD+IYVLT G+ +T SV
Sbjct  234  ELLRAAKVDGATAWQRLTRVMLPLMKPAILVAVLFRVLDSFRIFDSIYVLTAGAYDTRSV  293

Query  257  SILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGE  303
            SILGYDNLF   N+G+GS++SVLIF  VA++AF+FIK FGAAAPG E
Sbjct  294  SILGYDNLFTALNLGVGSSLSVLIFLVVALVAFVFIKGFGAAAPGTE  340


>gi|256374955|ref|YP_003098615.1| ABC transporter inner membrane protein [Actinosynnema mirum DSM 
43827]
 gi|255919258|gb|ACU34769.1| binding-protein-dependent transport systems inner membrane component 
[Actinosynnema mirum DSM 43827]
Length=318

 Score =  362 bits (928),  Expect = 5e-98, Method: Compositional matrix adjust.
 Identities = 192/302 (64%), Positives = 237/302 (79%), Gaps = 3/302 (0%)

Query  6    QRTATAVFSRTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTA  65
             + A A  S  G R AERRL  +L  PA ++M  V  YPI Y+ WLSLQR +L  P+   
Sbjct  19   DKKAKAALSE-GKR-AERRLGLLLCLPAILIMALVAGYPILYSFWLSLQRYDLKFPDRQE  76

Query  66   FIGLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVL  125
            F+   NY T+L   YWW AL +TL IT VSV +EFVLG+ALAL+MHRTL+GKG+VRTA L
Sbjct  77   FVWFENYATVLSSPYWWDALWITLIITFVSVVLEFVLGMALALIMHRTLVGKGIVRTASL  136

Query  126  IPYGIVTVVASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSL  185
            IPYGIVTVVA++SW YAWTPGTGYLA L   D   LT+++P++ IV++AEVWKTTPFM+L
Sbjct  137  IPYGIVTVVAAFSWRYAWTPGTGYLAELAGGDPV-LTEKVPAIMIVILAEVWKTTPFMAL  195

Query  186  LLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYV  245
            LL+AGLALVPEDLL+AA VDGAS W+R  KV++P++KPAI+VALLFRTLDAFRIFDN++V
Sbjct  196  LLMAGLALVPEDLLKAAAVDGASPWQRFVKVMIPVMKPAILVALLFRTLDAFRIFDNLFV  255

Query  246  LTGGSNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPS  305
            LT GS  T SVS++ Y+NL KG N+G+GS +SVLIF  VA+IAFIF+KLFG AAPG + +
Sbjct  256  LTAGSQGTSSVSMVSYNNLIKGLNLGIGSTMSVLIFVAVAIIAFIFVKLFGTAAPGSDNT  315

Query  306  GR  307
            GR
Sbjct  316  GR  317


>gi|288917512|ref|ZP_06411877.1| binding-protein-dependent transport systems inner membrane component 
[Frankia sp. EUN1f]
 gi|288351058|gb|EFC85270.1| binding-protein-dependent transport systems inner membrane component 
[Frankia sp. EUN1f]
Length=282

 Score =  360 bits (925),  Expect = 1e-97, Method: Compositional matrix adjust.
 Identities = 189/283 (67%), Positives = 234/283 (83%), Gaps = 1/283 (0%)

Query  25   LAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILIDRYWWTA  84
            + ++L APA ++++ VTAYPIGYA++LSL+R +L  P DTAF+GL NY T+L    WW A
Sbjct  1    MGWLLCAPAVLVILLVTAYPIGYAVYLSLRRYDLRFPADTAFVGLANYGTVLSSGLWWQA  60

Query  85   LAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYSWYYAWT  144
            L +T+ IT VSV IEFVLGLALAL+MHRTL+G+GLVRT +LIPYGIVTVVA++ W +AWT
Sbjct  61   LKITMIITVVSVAIEFVLGLALALLMHRTLVGRGLVRTVILIPYGIVTVVAAFGWRFAWT  120

Query  145  PGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDLLRAAQV  204
            PGTGYLA L   D+APLT Q   + ++++AEVWKTTPFM+LLLLAGLALVPE+LLRAAQV
Sbjct  121  PGTGYLAGLFG-DAAPLTSQTWGVAVIILAEVWKTTPFMALLLLAGLALVPEELLRAAQV  179

Query  205  DGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSILGYDNL  264
            DGA AW RL +V LP++KPAI+VALLFRTLD FRIFD+IYVLT G+++T SVSILGYDNL
Sbjct  180  DGAGAWARLRRVTLPLMKPAILVALLFRTLDGFRIFDDIYVLTAGAHDTRSVSILGYDNL  239

Query  265  FKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR  307
            F   N+G+GSA+SVLIFG VA+IA +F++ FG AAPG E   R
Sbjct  240  FTALNLGVGSALSVLIFGVVALIAVVFVRGFGTAAPGQETDHR  282


>gi|158316385|ref|YP_001508893.1| binding-protein-dependent transport systems inner membrane component 
[Frankia sp. EAN1pec]
 gi|158111790|gb|ABW13987.1| binding-protein-dependent transport systems inner membrane component 
[Frankia sp. EAN1pec]
Length=331

 Score =  353 bits (905),  Expect = 3e-95, Method: Compositional matrix adjust.
 Identities = 192/283 (68%), Positives = 237/283 (84%), Gaps = 1/283 (0%)

Query  21   AERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTILIDRY  80
            AERRL + L APA ++++AVT YP+GYA++LSL R +L  P D+ F+GL NY T+L    
Sbjct  47   AERRLGWALCAPAVIVILAVTGYPVGYAVYLSLHRYDLRFPADSEFVGLTNYATVLTSPL  106

Query  81   WWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYSWY  140
            WW ALAVT+ I  +SVTI+FVLGLALAL MHR LIG+GL+RT +LIPYGIVTVVA++ W 
Sbjct  107  WWQALAVTVIIAVISVTIQFVLGLALALAMHRALIGRGLIRTVILIPYGIVTVVAAFGWR  166

Query  141  YAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDLLR  200
            YAWTP TGYL+ L   D+APLT Q+  + ++V+AEVWKTTPFM LLLLAGLALVPEDLLR
Sbjct  167  YAWTPDTGYLSGLFG-DAAPLTSQVQGIAVIVLAEVWKTTPFMVLLLLAGLALVPEDLLR  225

Query  201  AAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSILG  260
            AA+VDGA+AW+RLT+VILP++KPAI+VALLFR LDAFRIFD+IYVLT G+ +T SVSILG
Sbjct  226  AAKVDGATAWQRLTRVILPLMKPAILVALLFRVLDAFRIFDSIYVLTAGAYDTRSVSILG  285

Query  261  YDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGE  303
            YDNLF   N+G+GS++SVLIF  VA++AF+F+K FGAAAPGGE
Sbjct  286  YDNLFTALNLGVGSSLSVLIFLVVALVAFVFVKGFGAAAPGGE  328


>gi|291302103|ref|YP_003513381.1| binding-protein-dependent transporter inner membrane component 
[Stackebrandtia nassauensis DSM 44728]
 gi|290571323|gb|ADD44288.1| binding-protein-dependent transport systems inner membrane component 
[Stackebrandtia nassauensis DSM 44728]
Length=299

 Score =  352 bits (904),  Expect = 3e-95, Method: Compositional matrix adjust.
 Identities = 172/287 (60%), Positives = 222/287 (78%), Gaps = 0/287 (0%)

Query  16   TGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTI  75
            + ++ AERRL ++L APAA++M+AV  +PI  ++  S QR++L  P+D  F+G  NY T+
Sbjct  11   SDAKAAERRLGWLLCAPAAIVMLAVAGWPILLSIITSFQRSDLRFPDDKGFVGFANYATV  70

Query  76   LIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVA  135
            L   +WWTA  VT+ I  VSV +E VLG+ LA+VMHRTL+ KGL+RT VLIPYGIVTVVA
Sbjct  71   LTSEHWWTAFGVTMLIMVVSVAVELVLGMGLAVVMHRTLVAKGLLRTTVLIPYGIVTVVA  130

Query  136  SYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVP  195
            +Y W YAWTP TG+LA LLP  SAPLT++ P+L I++ AE+WKTTPFM+LLLLAGL++VP
Sbjct  131  AYGWQYAWTPDTGWLAGLLPEGSAPLTERWPALLIIIGAEIWKTTPFMALLLLAGLSVVP  190

Query  196  EDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGS  255
            ++L RAA +DGA  W+R  KV LP++KPAI+VALLFR LDAFRI+DNIYVLT G+ +T S
Sbjct  191  DELHRAASMDGAGRWQRFVKVTLPLMKPAILVALLFRMLDAFRIYDNIYVLTNGAQDTAS  250

Query  256  VSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGG  302
            VSI  Y NL  G N+G+GS +SVLIF  VA+IAFIF+K  G + P G
Sbjct  251  VSITTYHNLVSGLNLGIGSTMSVLIFVTVAIIAFIFVKGLGTSTPEG  297


>gi|291298567|ref|YP_003509845.1| binding-protein-dependent transporter inner membrane component 
[Stackebrandtia nassauensis DSM 44728]
 gi|290567787|gb|ADD40752.1| binding-protein-dependent transport systems inner membrane component 
[Stackebrandtia nassauensis DSM 44728]
Length=292

 Score =  333 bits (855),  Expect = 2e-89, Method: Compositional matrix adjust.
 Identities = 171/286 (60%), Positives = 219/286 (77%), Gaps = 0/286 (0%)

Query  16   TGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFIGLGNYHTI  75
            T  + AERRL   L APAA  M+ V  +PI Y++ LS +R +L  P+D A++G  NY T+
Sbjct  3    TDVKAAERRLGLWLCAPAAAFMLLVAGWPILYSVILSFKRYDLRFPDDQAWVGFSNYATV  62

Query  76   LIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVA  135
            L + +WWT+  VT+ IT VSV  E VLG+ALA VM+RTL+ KGL+RT VLIPYGIVTVVA
Sbjct  63   LTNEFWWTSFGVTMIITVVSVAFELVLGMALAQVMYRTLVAKGLLRTVVLIPYGIVTVVA  122

Query  136  SYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVP  195
            ++ W+YAWTPGTG+LA +LP   APLT+  P++GI+++AEVWKTTPFM+LLLLAGLA+VP
Sbjct  123  AFGWFYAWTPGTGWLAAMLPDGEAPLTEFWPAIGIIILAEVWKTTPFMALLLLAGLAIVP  182

Query  196  EDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGS  255
            E+L RAA +DGA  W+R  ++ LP+++PAI VALLFR LDAFRI+DNIYVLT GS +TGS
Sbjct  183  EELHRAAAMDGAGRWQRFVRITLPLMRPAIAVALLFRILDAFRIYDNIYVLTKGSQSTGS  242

Query  256  VSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPG  301
            VSIL Y NL  G N+G+GS +SVLIF  VA+IAF F+ +     PG
Sbjct  243  VSILTYRNLVSGLNLGIGSTMSVLIFITVAIIAFFFVTVLKTGTPG  288


>gi|333918622|ref|YP_004492203.1| binding-protein-dependent transport systems inner membrane component 
[Amycolicicoccus subflavus DQS3-9A1]
 gi|333480843|gb|AEF39403.1| Binding-protein-dependent transport systems inner membrane component 
[Amycolicicoccus subflavus DQS3-9A1]
Length=312

 Score =  319 bits (818),  Expect = 3e-85, Method: Compositional matrix adjust.
 Identities = 179/300 (60%), Positives = 231/300 (77%), Gaps = 4/300 (1%)

Query  8    TATAVFSRTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFI  67
            TA A    +  + AERRL  +L APA ++M+AV AYP+ YA+WLS  R +L TP+D  FI
Sbjct  17   TAIAKQRHSEGKRAERRLGLLLCAPAIIVMLAVAAYPLVYAVWLSFFRADLRTPDDQEFI  76

Query  68   GLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIP  127
            GLGNY T+L    WW A  VT+ IT +    + VLG+ LA+VMHRT+IG+GLVRT+ L+P
Sbjct  77   GLGNYITVLSSPIWWNAFGVTMFITVIGTFFQLVLGMLLAIVMHRTIIGRGLVRTSALVP  136

Query  128  YGIVTVVASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLL  187
            Y IVTVVA++SW +AWT   G+LA     +SAPLT +  SL I++++EVWKT PFM+LLL
Sbjct  137  YAIVTVVAAFSWRFAWTQNLGWLAG----ESAPLTDRWSSLWIIILSEVWKTVPFMALLL  192

Query  188  LAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLT  247
            +AGLALVPEDLL+AA +DGA+AW+R  +V +P+IKPAI+VALLFRTLD+FRIFDNI+VLT
Sbjct  193  MAGLALVPEDLLKAASMDGANAWQRFWRVTVPIIKPAILVALLFRTLDSFRIFDNIFVLT  252

Query  248  GGSNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR  307
             G+N+T SVSIL Y+NL +G N+G+GS +SVLIF  +A+IAFI+IKLFGAAAPG     R
Sbjct  253  SGANDTASVSILAYNNLIRGLNLGIGSTMSVLIFISIAIIAFIYIKLFGAAAPGAGDDRR  312


>gi|333920160|ref|YP_004493741.1| binding-protein-dependent transport systems inner membrane component 
[Amycolicicoccus subflavus DQS3-9A1]
 gi|333482381|gb|AEF40941.1| Binding-protein-dependent transport systems inner membrane component 
[Amycolicicoccus subflavus DQS3-9A1]
Length=312

 Score =  318 bits (816),  Expect = 5e-85, Method: Compositional matrix adjust.
 Identities = 179/300 (60%), Positives = 231/300 (77%), Gaps = 4/300 (1%)

Query  8    TATAVFSRTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFI  67
            TA A    +  + AERRL  +L APA ++M+AV AYP+ YA+WLS  R +L TP+D  FI
Sbjct  17   TAIAKQRHSEGKRAERRLGLLLCAPAIIVMLAVAAYPLIYAVWLSFFRADLRTPDDQEFI  76

Query  68   GLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIP  127
            GLGNY T+L    WW A  VT+ IT +    + VLG+ LA+VMHRT+IG+GLVRT+ L+P
Sbjct  77   GLGNYITVLSSPIWWNAFGVTMFITVIGTFFQLVLGMLLAIVMHRTIIGRGLVRTSALVP  136

Query  128  YGIVTVVASYSWYYAWTPGTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLL  187
            Y IVTVVA++SW +AWT   G+LA     +SAPLT +  SL I++++EVWKT PFM+LLL
Sbjct  137  YAIVTVVAAFSWRFAWTQNLGWLAG----ESAPLTDRWSSLWIIILSEVWKTVPFMALLL  192

Query  188  LAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLT  247
            +AGLALVPEDLL+AA +DGA+AW+R  +V +P+IKPAI+VALLFRTLD+FRIFDNI+VLT
Sbjct  193  MAGLALVPEDLLKAASMDGANAWQRFWRVTVPIIKPAILVALLFRTLDSFRIFDNIFVLT  252

Query  248  GGSNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGEPSGR  307
             G+N+T SVSIL Y+NL +G N+G+GS +SVLIF  +A+IAFI+IKLFGAAAPG     R
Sbjct  253  SGANDTASVSILAYNNLIRGLNLGIGSTMSVLIFISIAIIAFIYIKLFGAAAPGAGDDRR  312



Lambda     K      H
   0.326    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 521296303248


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40