BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1237
Length=274
Score E
Sequences producing significant alignments: (Bits) Value
gi|339294223|gb|AEJ46334.1| sugar-transport integral membrane pr... 528 3e-148
gi|254231497|ref|ZP_04924824.1| sugar-transport integral membran... 527 5e-148
gi|15608377|ref|NP_215753.1| sugar-transport integral membrane p... 526 2e-147
gi|339297863|gb|AEJ49973.1| sugar-transport integral membrane pr... 494 4e-138
gi|240173001|ref|ZP_04751659.1| putative sugar-transport integra... 471 7e-131
gi|183984176|ref|YP_001852467.1| sugar-transport integral membra... 463 1e-128
gi|342862116|ref|ZP_08718759.1| SugB [Mycobacterium colombiense ... 461 4e-128
gi|15827533|ref|NP_301796.1| ABC transporter inner membrane prot... 461 5e-128
gi|699148|gb|AAA62914.1| malg [Mycobacterium leprae] 461 5e-128
gi|333989848|ref|YP_004522462.1| sugar-transport integral membra... 457 7e-127
gi|296170138|ref|ZP_06851736.1| sugar ABC superfamily ATP bindin... 455 3e-126
gi|254823050|ref|ZP_05228051.1| SugB [Mycobacterium intracellula... 455 4e-126
gi|336458568|gb|EGO37535.1| ABC-type sugar transport system, per... 454 5e-126
gi|108800945|ref|YP_641142.1| binding-protein-dependent transpor... 452 3e-125
gi|126436570|ref|YP_001072261.1| binding-protein-dependent trans... 452 3e-125
gi|41408644|ref|NP_961480.1| SugB [Mycobacterium avium subsp. pa... 448 4e-124
gi|254774254|ref|ZP_05215770.1| SugB [Mycobacterium avium subsp.... 448 4e-124
gi|118463177|ref|YP_880620.1| ABC transporter permease [Mycobact... 442 4e-122
gi|169628465|ref|YP_001702114.1| sugar ABC transporter permease ... 439 2e-121
gi|111022953|ref|YP_705925.1| sugar ABC transporter permease [Rh... 427 1e-117
gi|118473813|ref|YP_889309.1| ABC transporter permease [Mycobact... 423 1e-116
gi|226307632|ref|YP_002767592.1| ABC transporter permease protei... 421 9e-116
gi|343928021|ref|ZP_08767486.1| putative ABC transporter permeas... 419 2e-115
gi|229493741|ref|ZP_04387523.1| ABC sugar transporter, permease ... 418 3e-115
gi|296138928|ref|YP_003646171.1| binding-protein-dependent trans... 414 7e-114
gi|118619614|ref|YP_907946.1| sugar-transport integral membrane ... 412 2e-113
gi|262201809|ref|YP_003273017.1| binding-protein-dependent trans... 410 8e-113
gi|257054717|ref|YP_003132549.1| carbohydrate ABC transporter me... 399 2e-109
gi|256374956|ref|YP_003098616.1| ABC transporter inner membrane ... 399 3e-109
gi|330468990|ref|YP_004406733.1| binding-protein-dependent trans... 394 6e-108
gi|326382047|ref|ZP_08203740.1| multiple sugar transport system ... 391 5e-107
gi|331694916|ref|YP_004331155.1| ABC transporter integral membra... 390 9e-107
gi|300783010|ref|YP_003763301.1| sugar ABC transporter permease ... 388 4e-106
gi|238060004|ref|ZP_04604713.1| ABC sugar transporter permease c... 387 9e-106
gi|134097643|ref|YP_001103304.1| ABC sugar transporter, permease... 385 3e-105
gi|302524365|ref|ZP_07276707.1| ABC sugar transporter [Streptomy... 383 2e-104
gi|302562113|ref|ZP_07314455.1| sugar ABC transporter, permease ... 380 2e-103
gi|291435774|ref|ZP_06575164.1| binding-protein-dependent transp... 378 7e-103
gi|312197859|ref|YP_004017920.1| binding-protein-dependent trans... 377 9e-103
gi|213966430|ref|ZP_03394607.1| ABC sugar transporter, permease ... 374 6e-102
gi|158316384|ref|YP_001508892.1| binding-protein-dependent trans... 372 3e-101
gi|291298568|ref|YP_003509846.1| binding-protein-dependent trans... 372 5e-101
gi|302868629|ref|YP_003837266.1| binding-protein-dependent trans... 364 9e-99
gi|111223173|ref|YP_713967.1| sugar ABC transporter membrane pro... 350 1e-94
gi|77163815|ref|YP_342340.1| ABC transporter, inner membrane sub... 349 2e-94
gi|254436228|ref|ZP_05049735.1| ABC transporter, permease protei... 349 2e-94
gi|292491691|ref|YP_003527130.1| binding-protein-dependent trans... 348 4e-94
gi|291302104|ref|YP_003513382.1| binding-protein-dependent trans... 343 1e-92
gi|300113097|ref|YP_003759672.1| binding-protein-dependent trans... 342 3e-92
gi|288917511|ref|ZP_06411876.1| binding-protein-dependent transp... 337 8e-91
>gi|339294223|gb|AEJ46334.1| sugar-transport integral membrane protein ABC transporter sugB
[Mycobacterium tuberculosis CCDC5079]
Length=282
Score = 528 bits (1361), Expect = 3e-148, Method: Compositional matrix adjust.
Identities = 274/274 (100%), Positives = 274/274 (100%), Gaps = 0/274 (0%)
Query 1 VGARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGD 60
VGARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGD
Sbjct 9 VGARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGD 68
Query 61 LFSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTP 120
LFSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTP
Sbjct 69 LFSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTP 128
Query 121 LFNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFR 180
LFNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFR
Sbjct 129 LFNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFR 188
Query 181 KVIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGS 240
KVIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGS
Sbjct 189 KVIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGS 248
Query 241 IAAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG 274
IAAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG
Sbjct 249 IAAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG 282
>gi|254231497|ref|ZP_04924824.1| sugar-transport integral membrane protein ABC transporter sugB
[Mycobacterium tuberculosis C]
gi|298524737|ref|ZP_07012146.1| ABC transporter, permease protein SugB [Mycobacterium tuberculosis
94_M4241A]
gi|308231791|ref|ZP_07663934.1| sugar-transport membrane protein ABC transporter sugB [Mycobacterium
tuberculosis SUMu001]
23 more sequence titles
Length=279
Score = 527 bits (1358), Expect = 5e-148, Method: Compositional matrix adjust.
Identities = 274/274 (100%), Positives = 274/274 (100%), Gaps = 0/274 (0%)
Query 1 VGARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGD 60
VGARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGD
Sbjct 6 VGARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGD 65
Query 61 LFSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTP 120
LFSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTP
Sbjct 66 LFSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTP 125
Query 121 LFNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFR 180
LFNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFR
Sbjct 126 LFNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFR 185
Query 181 KVIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGS 240
KVIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGS
Sbjct 186 KVIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGS 245
Query 241 IAAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG 274
IAAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG
Sbjct 246 IAAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG 279
>gi|15608377|ref|NP_215753.1| sugar-transport integral membrane protein ABC transporter SugB
[Mycobacterium tuberculosis H37Rv]
gi|15840682|ref|NP_335719.1| sugar ABC transporter, permease protein [Mycobacterium tuberculosis
CDC1551]
gi|31792430|ref|NP_854923.1| sugar-transport integral membrane protein ABC transporter SugB
[Mycobacterium bovis AF2122/97]
52 more sequence titles
Length=274
Score = 526 bits (1355), Expect = 2e-147, Method: Compositional matrix adjust.
Identities = 273/274 (99%), Positives = 274/274 (100%), Gaps = 0/274 (0%)
Query 1 VGARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGD 60
+GARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGD
Sbjct 1 MGARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGD 60
Query 61 LFSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTP 120
LFSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTP
Sbjct 61 LFSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTP 120
Query 121 LFNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFR 180
LFNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFR
Sbjct 121 LFNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFR 180
Query 181 KVIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGS 240
KVIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGS
Sbjct 181 KVIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGS 240
Query 241 IAAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG 274
IAAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG
Sbjct 241 IAAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG 274
>gi|339297863|gb|AEJ49973.1| sugar-transport integral membrane protein ABC transporter sugB
[Mycobacterium tuberculosis CCDC5180]
Length=258
Score = 494 bits (1273), Expect = 4e-138, Method: Compositional matrix adjust.
Identities = 257/258 (99%), Positives = 258/258 (100%), Gaps = 0/258 (0%)
Query 17 VGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFSSALINSIGIGLIT 76
+GYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFSSALINSIGIGLIT
Sbjct 1 MGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFSSALINSIGIGLIT 60
Query 77 TVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFNIERAIGLFDTWPG 136
TVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFNIERAIGLFDTWPG
Sbjct 61 TVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFNIERAIGLFDTWPG 120
Query 137 LILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVIVPLAAPGLVTAAI 196
LILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVIVPLAAPGLVTAAI
Sbjct 121 LILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVIVPLAAPGLVTAAI 180
Query 197 LVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAAGAIVITIPIIVFV 256
LVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAAGAIVITIPIIVFV
Sbjct 181 LVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAAGAIVITIPIIVFV 240
Query 257 LIFQRRIVAGLTSGAVKG 274
LIFQRRIVAGLTSGAVKG
Sbjct 241 LIFQRRIVAGLTSGAVKG 258
>gi|240173001|ref|ZP_04751659.1| putative sugar-transport integral membrane protein ABC transporter
[Mycobacterium kansasii ATCC 12478]
Length=274
Score = 471 bits (1211), Expect = 7e-131, Method: Compositional matrix adjust.
Identities = 247/274 (91%), Positives = 263/274 (96%), Gaps = 0/274 (0%)
Query 1 VGARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGD 60
+ ARR WA++D LVV YALLPVLWIFSLSLKPTSTVKDGKLIP++VT DNYRG+FRG+
Sbjct 1 MSARRTMAWAIIDVLVVVYALLPVLWIFSLSLKPTSTVKDGKLIPASVTLDNYRGVFRGE 60
Query 61 LFSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTP 120
FSSALINSIG+GLITTVIAV+LGAMAAYAVARL FPGKR+LIGA LLITMFP+ISLVTP
Sbjct 61 FFSSALINSIGVGLITTVIAVLLGAMAAYAVARLAFPGKRVLIGATLLITMFPAISLVTP 120
Query 121 LFNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFR 180
LFNIERA+GLFDTWPGLILPYITFALPLAIYTLSAFFRE+PWDLEKAAKMDGATPGQAFR
Sbjct 121 LFNIERAVGLFDTWPGLILPYITFALPLAIYTLSAFFREVPWDLEKAAKMDGATPGQAFR 180
Query 181 KVIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGS 240
KVI PLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGS
Sbjct 181 KVIAPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGS 240
Query 241 IAAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG 274
IAAGA+VIT+PIIVFVL+FQRRIVAGLTSGAVKG
Sbjct 241 IAAGAMVITVPIIVFVLVFQRRIVAGLTSGAVKG 274
>gi|183984176|ref|YP_001852467.1| sugar-transport integral membrane protein ABC transporter SugB
[Mycobacterium marinum M]
gi|183177502|gb|ACC42612.1| sugar-transport integral membrane protein ABC transporter SugB
[Mycobacterium marinum M]
Length=276
Score = 463 bits (1192), Expect = 1e-128, Method: Compositional matrix adjust.
Identities = 246/273 (91%), Positives = 261/273 (96%), Gaps = 0/273 (0%)
Query 2 GARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDL 61
G+ R T+W V+DT+VV YALLPVLWI SLSLKPTSTVKDG+LIPS+VT DNYRG+F GDL
Sbjct 4 GSGRRTFWVVIDTMVVVYALLPVLWILSLSLKPTSTVKDGRLIPSSVTLDNYRGVFGGDL 63
Query 62 FSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPL 121
FSSALINSIGIGL TTVIAV+LGAMAAYAVARL+FPGKRLL+G ALLITMFP+ISLVTPL
Sbjct 64 FSSALINSIGIGLTTTVIAVLLGAMAAYAVARLDFPGKRLLVGVALLITMFPAISLVTPL 123
Query 122 FNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRK 181
FNIER IGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAA+MDGATP QAFRK
Sbjct 124 FNIERRIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAQMDGATPYQAFRK 183
Query 182 VIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSI 241
VIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKA+ITAPVAIANF GSSQFEEPTGSI
Sbjct 184 VIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKASITAPVAIANFAGSSQFEEPTGSI 243
Query 242 AAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG 274
AAGA+VIT+PIIVFVLIFQRRIVAGLTSGAVKG
Sbjct 244 AAGAMVITVPIIVFVLIFQRRIVAGLTSGAVKG 276
>gi|342862116|ref|ZP_08718759.1| SugB [Mycobacterium colombiense CECT 3035]
gi|342130420|gb|EGT83735.1| SugB [Mycobacterium colombiense CECT 3035]
Length=286
Score = 461 bits (1187), Expect = 4e-128, Method: Compositional matrix adjust.
Identities = 243/273 (90%), Positives = 262/273 (96%), Gaps = 0/273 (0%)
Query 2 GARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDL 61
GARR WAV+DTLVV YALLPVLWIFSLSLKP+ST+KDGKLIPS+++ DNYRGIFRGD+
Sbjct 14 GARRTATWAVIDTLVVVYALLPVLWIFSLSLKPSSTIKDGKLIPSSISLDNYRGIFRGDV 73
Query 62 FSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPL 121
FSSALINS+G+GLITTVIAV LGAMAAYAVARL+FPGKRLL+G LLITMFP+ISLVTPL
Sbjct 74 FSSALINSVGVGLITTVIAVTLGAMAAYAVARLDFPGKRLLVGVTLLITMFPAISLVTPL 133
Query 122 FNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRK 181
FNIER +GLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATP QAFRK
Sbjct 134 FNIERFVGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPAQAFRK 193
Query 182 VIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSI 241
VIVPLAAPG+VTAAILVFIFAWNDLLLAL+LTATKAAITAPVAI NF+GSSQFEEPTGSI
Sbjct 194 VIVPLAAPGVVTAAILVFIFAWNDLLLALTLTATKAAITAPVAIVNFSGSSQFEEPTGSI 253
Query 242 AAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG 274
AAGA+VIT+PII+FVLIFQRRIVAGLTSGAVKG
Sbjct 254 AAGAVVITVPIIIFVLIFQRRIVAGLTSGAVKG 286
>gi|15827533|ref|NP_301796.1| ABC transporter inner membrane protein [Mycobacterium leprae
TN]
gi|221230010|ref|YP_002503426.1| putative ABC-transport protein, inner membrane component [Mycobacterium
leprae Br4923]
gi|13093083|emb|CAC31469.1| probable ABC-transport protein, inner membrane component [Mycobacterium
leprae]
gi|219933117|emb|CAR71183.1| probable ABC-transport protein, inner membrane component [Mycobacterium
leprae Br4923]
Length=287
Score = 461 bits (1187), Expect = 5e-128, Method: Compositional matrix adjust.
Identities = 246/274 (90%), Positives = 255/274 (94%), Gaps = 0/274 (0%)
Query 1 VGARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGD 60
VGARRAT W ++DT VVGYALLPVLWI SLSLKP STVKDGKLIPS VTFDNYRGIFR D
Sbjct 14 VGARRATIWVIIDTFVVGYALLPVLWILSLSLKPASTVKDGKLIPSLVTFDNYRGIFRSD 73
Query 61 LFSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTP 120
LFSSALINSIGIGL TTVIAV+ GAMAAYA+ARL FPGKRLL+G LL+TMFP+ISLVTP
Sbjct 74 LFSSALINSIGIGLTTTVIAVMFGAMAAYAIARLAFPGKRLLVGTTLLVTMFPAISLVTP 133
Query 121 LFNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFR 180
LFNIER +GLFDTW GLILPYITFALPLAIYTLSAFF EIPWDLEKAAKMDGAT GQAFR
Sbjct 134 LFNIERRVGLFDTWAGLILPYITFALPLAIYTLSAFFAEIPWDLEKAAKMDGATSGQAFR 193
Query 181 KVIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGS 240
KVIVPLAAPGLVTAAILVFIFAWNDLLLALSLT+TKAAITAPVAI NFTGSSQFEEPTGS
Sbjct 194 KVIVPLAAPGLVTAAILVFIFAWNDLLLALSLTSTKAAITAPVAITNFTGSSQFEEPTGS 253
Query 241 IAAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG 274
IAAGAIVIT PIIVFV IFQRRIVAGLTSGAVKG
Sbjct 254 IAAGAIVITAPIIVFVWIFQRRIVAGLTSGAVKG 287
>gi|699148|gb|AAA62914.1| malg [Mycobacterium leprae]
Length=296
Score = 461 bits (1186), Expect = 5e-128, Method: Compositional matrix adjust.
Identities = 246/274 (90%), Positives = 255/274 (94%), Gaps = 0/274 (0%)
Query 1 VGARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGD 60
VGARRAT W ++DT VVGYALLPVLWI SLSLKP STVKDGKLIPS VTFDNYRGIFR D
Sbjct 23 VGARRATIWVIIDTFVVGYALLPVLWILSLSLKPASTVKDGKLIPSLVTFDNYRGIFRSD 82
Query 61 LFSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTP 120
LFSSALINSIGIGL TTVIAV+ GAMAAYA+ARL FPGKRLL+G LL+TMFP+ISLVTP
Sbjct 83 LFSSALINSIGIGLTTTVIAVMFGAMAAYAIARLAFPGKRLLVGTTLLVTMFPAISLVTP 142
Query 121 LFNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFR 180
LFNIER +GLFDTW GLILPYITFALPLAIYTLSAFF EIPWDLEKAAKMDGAT GQAFR
Sbjct 143 LFNIERRVGLFDTWAGLILPYITFALPLAIYTLSAFFAEIPWDLEKAAKMDGATSGQAFR 202
Query 181 KVIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGS 240
KVIVPLAAPGLVTAAILVFIFAWNDLLLALSLT+TKAAITAPVAI NFTGSSQFEEPTGS
Sbjct 203 KVIVPLAAPGLVTAAILVFIFAWNDLLLALSLTSTKAAITAPVAITNFTGSSQFEEPTGS 262
Query 241 IAAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG 274
IAAGAIVIT PIIVFV IFQRRIVAGLTSGAVKG
Sbjct 263 IAAGAIVITAPIIVFVWIFQRRIVAGLTSGAVKG 296
>gi|333989848|ref|YP_004522462.1| sugar-transport integral membrane protein ABC transporter SugB
[Mycobacterium sp. JDM601]
gi|333485816|gb|AEF35208.1| sugar-transport integral membrane protein ABC transporter SugB
[Mycobacterium sp. JDM601]
Length=275
Score = 457 bits (1176), Expect = 7e-127, Method: Compositional matrix adjust.
Identities = 242/271 (90%), Positives = 257/271 (95%), Gaps = 0/271 (0%)
Query 4 RRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFS 63
RR W ++D VV YAL+PVLWIFSLSLKPTSTVKDGKLIPS+VT DNYRGIF GD+F
Sbjct 5 RRRAAWLIIDLAVVVYALVPVLWIFSLSLKPTSTVKDGKLIPSSVTLDNYRGIFAGDVFG 64
Query 64 SALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFN 123
SALINS+GIGLITTVIAVV+GAMAAYAVARL+FPGKRLL+GAALLI MFP ISLVTP+FN
Sbjct 65 SALINSVGIGLITTVIAVVIGAMAAYAVARLDFPGKRLLVGAALLIAMFPQISLVTPIFN 124
Query 124 IERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVI 183
IERAIGLFDTWPGLI+PYITFALPLAIYTLSAFF EIPWDLEKAAKMDGATPGQAFRKVI
Sbjct 125 IERAIGLFDTWPGLIIPYITFALPLAIYTLSAFFSEIPWDLEKAAKMDGATPGQAFRKVI 184
Query 184 VPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAA 243
PLAAPG+VTAAILVFIFAWNDLLLALSLTATKA+ITAPVAIANFTGSSQFEEPTGSIAA
Sbjct 185 APLAAPGIVTAAILVFIFAWNDLLLALSLTATKASITAPVAIANFTGSSQFEEPTGSIAA 244
Query 244 GAIVITIPIIVFVLIFQRRIVAGLTSGAVKG 274
GA+VIT+PIIVFVLIFQRRIVAGLTSGAVKG
Sbjct 245 GAMVITVPIIVFVLIFQRRIVAGLTSGAVKG 275
>gi|296170138|ref|ZP_06851736.1| sugar ABC superfamily ATP binding cassette transporter, membrane
protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295895200|gb|EFG74914.1| sugar ABC superfamily ATP binding cassette transporter, membrane
protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=283
Score = 455 bits (1171), Expect = 3e-126, Method: Compositional matrix adjust.
Identities = 240/266 (91%), Positives = 256/266 (97%), Gaps = 0/266 (0%)
Query 9 WAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFSSALIN 68
WAV+D +VV YALLPVLWI SLSLKPTSTVKDGKLIPS+V+F+NYRGIFRGDLFSSALIN
Sbjct 18 WAVIDAVVVVYALLPVLWILSLSLKPTSTVKDGKLIPSSVSFENYRGIFRGDLFSSALIN 77
Query 69 SIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFNIERAI 128
SIGIGL T IAVVLGAMAAYA+ARL+FPGKR+LIGA LL+TMFP+ISLVTPLFNIER +
Sbjct 78 SIGIGLTATAIAVVLGAMAAYAIARLDFPGKRVLIGATLLVTMFPAISLVTPLFNIERFV 137
Query 129 GLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVIVPLAA 188
GLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATP QAFRKVIVPLAA
Sbjct 138 GLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPAQAFRKVIVPLAA 197
Query 189 PGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAAGAIVI 248
PG+VTAAILVFIFAWNDLLLALSLTATK+AITAPVAIANF GSSQFEEPTGSIAAGA+VI
Sbjct 198 PGVVTAAILVFIFAWNDLLLALSLTATKSAITAPVAIANFGGSSQFEEPTGSIAAGAVVI 257
Query 249 TIPIIVFVLIFQRRIVAGLTSGAVKG 274
T+PIIVFVLIFQRRI+AGLTSGAVKG
Sbjct 258 TVPIIVFVLIFQRRIIAGLTSGAVKG 283
>gi|254823050|ref|ZP_05228051.1| SugB [Mycobacterium intracellulare ATCC 13950]
Length=282
Score = 455 bits (1170), Expect = 4e-126, Method: Compositional matrix adjust.
Identities = 241/272 (89%), Positives = 257/272 (95%), Gaps = 0/272 (0%)
Query 3 ARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLF 62
ARR WAV+DT+VV YALLPVLWIFSLSLKPTSTVKDGKLIPS+V+ DNYRGIFRGD+F
Sbjct 11 ARRTAIWAVIDTVVVVYALLPVLWIFSLSLKPTSTVKDGKLIPSSVSLDNYRGIFRGDIF 70
Query 63 SSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLF 122
SSALINS+GIGLITT IAV LGAMA YA+ARL FPGKR L+GA LLITMFP+ISLVTPLF
Sbjct 71 SSALINSVGIGLITTAIAVTLGAMAGYAIARLNFPGKRALVGATLLITMFPAISLVTPLF 130
Query 123 NIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKV 182
NIER +GLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGA+P QAFRKV
Sbjct 131 NIERFVGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGASPAQAFRKV 190
Query 183 IVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIA 242
IVPLAAPG+VTAAILVFIFAWNDLLLAL+LTATKAAITAPVAI NF+GSSQFEEPTGSIA
Sbjct 191 IVPLAAPGVVTAAILVFIFAWNDLLLALTLTATKAAITAPVAIVNFSGSSQFEEPTGSIA 250
Query 243 AGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG 274
AGA+VIT+PII FVLIFQRRIVAGLTSGAVKG
Sbjct 251 AGAVVITVPIIAFVLIFQRRIVAGLTSGAVKG 282
>gi|336458568|gb|EGO37535.1| ABC-type sugar transport system, permease component [Mycobacterium
avium subsp. paratuberculosis S397]
Length=279
Score = 454 bits (1169), Expect = 5e-126, Method: Compositional matrix adjust.
Identities = 242/272 (89%), Positives = 260/272 (96%), Gaps = 0/272 (0%)
Query 3 ARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLF 62
ARR WAV+DTLVV YALLPVLWIFSLSLKPTSTVKDGKLIPS ++ +NYRGIFRGD F
Sbjct 8 ARRTVLWAVIDTLVVVYALLPVLWIFSLSLKPTSTVKDGKLIPSAISLENYRGIFRGDFF 67
Query 63 SSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLF 122
SSALINS+GIGLITT +AV+LGAMAAYAVARL+FPGKRLLIGA LLITMFP+ISLVTPLF
Sbjct 68 SSALINSVGIGLITTAVAVLLGAMAAYAVARLDFPGKRLLIGATLLITMFPAISLVTPLF 127
Query 123 NIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKV 182
NIER +GLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAK+DGATP QAFRKV
Sbjct 128 NIERFLGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKIDGATPAQAFRKV 187
Query 183 IVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIA 242
IVPLAAPG+VTAAILVFIFAWNDLLLAL+LTATKAAITAPVAI +F+GSSQFEEPTGSIA
Sbjct 188 IVPLAAPGVVTAAILVFIFAWNDLLLALTLTATKAAITAPVAIVSFSGSSQFEEPTGSIA 247
Query 243 AGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG 274
AGA+VIT+PII+FVLIFQRRIVAGLTSGAVKG
Sbjct 248 AGAVVITVPIILFVLIFQRRIVAGLTSGAVKG 279
>gi|108800945|ref|YP_641142.1| binding-protein-dependent transport systems inner membrane component
[Mycobacterium sp. MCS]
gi|119870085|ref|YP_940037.1| binding-protein-dependent transport systems inner membrane component
[Mycobacterium sp. KMS]
gi|108771364|gb|ABG10086.1| carbohydrate ABC transporter membrane protein 2, CUT1 family
[Mycobacterium sp. MCS]
gi|119696174|gb|ABL93247.1| carbohydrate ABC transporter membrane protein 2, CUT1 family
[Mycobacterium sp. KMS]
Length=278
Score = 452 bits (1162), Expect = 3e-125, Method: Compositional matrix adjust.
Identities = 241/274 (88%), Positives = 258/274 (95%), Gaps = 0/274 (0%)
Query 1 VGARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGD 60
V A RA+ WAV++ LVV YALLPVLWI SLSLKPTS+VKDGKLIP+ +TFDNY+GIF+G+
Sbjct 5 VTAGRASGWAVVNILVVIYALLPVLWILSLSLKPTSSVKDGKLIPTEITFDNYKGIFQGN 64
Query 61 LFSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTP 120
F+SALINSIGIGLITTVIAVV+G MAAYAVARL FPGKRLL+G ALLI MFP ISLVTP
Sbjct 65 AFTSALINSIGIGLITTVIAVVVGGMAAYAVARLTFPGKRLLVGVALLIAMFPQISLVTP 124
Query 121 LFNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFR 180
LFNIER+IGLFDTWPGLI+PYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATP QAFR
Sbjct 125 LFNIERSIGLFDTWPGLIIPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPAQAFR 184
Query 181 KVIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGS 240
KVI PLAAPG+VTAAILVFIFAWNDLLLALSLTAT+ AITAPVAIANFTGSSQFEEPTGS
Sbjct 185 KVIAPLAAPGIVTAAILVFIFAWNDLLLALSLTATQRAITAPVAIANFTGSSQFEEPTGS 244
Query 241 IAAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG 274
IAAGA+VITIPIIVFVLIFQRRIVAGLTSGAVKG
Sbjct 245 IAAGAMVITIPIIVFVLIFQRRIVAGLTSGAVKG 278
>gi|126436570|ref|YP_001072261.1| binding-protein-dependent transport systems inner membrane component
[Mycobacterium sp. JLS]
gi|126236370|gb|ABN99770.1| carbohydrate ABC transporter membrane protein 2, CUT1 family
[Mycobacterium sp. JLS]
Length=278
Score = 452 bits (1162), Expect = 3e-125, Method: Compositional matrix adjust.
Identities = 241/274 (88%), Positives = 258/274 (95%), Gaps = 0/274 (0%)
Query 1 VGARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGD 60
V A RA+ WAV++ LVV YALLPVLWI SLSLKPTS+VKDGKLIP+ +TFDNY+GIF+G+
Sbjct 5 VTAGRASGWAVVNILVVIYALLPVLWILSLSLKPTSSVKDGKLIPTEITFDNYKGIFQGN 64
Query 61 LFSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTP 120
F+SALINSIGIGLITTVIAVV+G MAAYAVARL FPGKRLL+G ALLI MFP ISLVTP
Sbjct 65 AFTSALINSIGIGLITTVIAVVIGGMAAYAVARLTFPGKRLLVGVALLIAMFPQISLVTP 124
Query 121 LFNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFR 180
LFNIER+IGLFDTWPGLI+PYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATP QAFR
Sbjct 125 LFNIERSIGLFDTWPGLIIPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPAQAFR 184
Query 181 KVIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGS 240
KVI PLAAPG+VTAAILVFIFAWNDLLLALSLTAT+ AITAPVAIANFTGSSQFEEPTGS
Sbjct 185 KVIAPLAAPGIVTAAILVFIFAWNDLLLALSLTATQRAITAPVAIANFTGSSQFEEPTGS 244
Query 241 IAAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG 274
IAAGA+VITIPIIVFVLIFQRRIVAGLTSGAVKG
Sbjct 245 IAAGAMVITIPIIVFVLIFQRRIVAGLTSGAVKG 278
>gi|41408644|ref|NP_961480.1| SugB [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41397002|gb|AAS04863.1| SugB [Mycobacterium avium subsp. paratuberculosis K-10]
Length=268
Score = 448 bits (1153), Expect = 4e-124, Method: Compositional matrix adjust.
Identities = 239/266 (90%), Positives = 257/266 (97%), Gaps = 0/266 (0%)
Query 9 WAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFSSALIN 68
WAV+DTLVV YALLPVLWIFSLSLKPTSTVKDGKLIPS ++ +NYRGIFRGD FSSALIN
Sbjct 3 WAVIDTLVVVYALLPVLWIFSLSLKPTSTVKDGKLIPSAISLENYRGIFRGDFFSSALIN 62
Query 69 SIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFNIERAI 128
S+GIGLITT +AV+LGAMAAYAVARL+FPGKRLLIGA LLITMFP+ISLVTPLFNIER +
Sbjct 63 SVGIGLITTAVAVLLGAMAAYAVARLDFPGKRLLIGATLLITMFPAISLVTPLFNIERFL 122
Query 129 GLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVIVPLAA 188
GLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAK+DGATP QAFRKVIVPLAA
Sbjct 123 GLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKIDGATPAQAFRKVIVPLAA 182
Query 189 PGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAAGAIVI 248
PG+VTAAILVFIFAWNDLLLAL+LTATKAAITAPVAI +F+GSSQFEEPTGSIAAGA+VI
Sbjct 183 PGVVTAAILVFIFAWNDLLLALTLTATKAAITAPVAIVSFSGSSQFEEPTGSIAAGAVVI 242
Query 249 TIPIIVFVLIFQRRIVAGLTSGAVKG 274
T+PII+FVLIFQRRIVAGLTSGAVKG
Sbjct 243 TVPIILFVLIFQRRIVAGLTSGAVKG 268
>gi|254774254|ref|ZP_05215770.1| SugB [Mycobacterium avium subsp. avium ATCC 25291]
Length=268
Score = 448 bits (1152), Expect = 4e-124, Method: Compositional matrix adjust.
Identities = 238/266 (90%), Positives = 257/266 (97%), Gaps = 0/266 (0%)
Query 9 WAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFSSALIN 68
WAV+DTLVV YALLPVLWIFSLSLKPTSTVKDGKLIPS ++ +NYRGIFRGD FSSALIN
Sbjct 3 WAVIDTLVVVYALLPVLWIFSLSLKPTSTVKDGKLIPSAISLENYRGIFRGDFFSSALIN 62
Query 69 SIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFNIERAI 128
S+GIGLITT +AV+LGAMAAYAVARL+FPGKRLLIGA LLITMFP+ISLVTPLFNIER +
Sbjct 63 SVGIGLITTAVAVLLGAMAAYAVARLDFPGKRLLIGATLLITMFPAISLVTPLFNIERFL 122
Query 129 GLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVIVPLAA 188
GLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAK+DGATP QAFRKVIVPLAA
Sbjct 123 GLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKIDGATPAQAFRKVIVPLAA 182
Query 189 PGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAAGAIVI 248
PG+VTAAILVFIFAWNDLLLAL+LTATKAAITAPVAI +F+GSSQFEEPTGSIAAGA+VI
Sbjct 183 PGVVTAAILVFIFAWNDLLLALTLTATKAAITAPVAIVSFSGSSQFEEPTGSIAAGAVVI 242
Query 249 TIPIIVFVLIFQRRIVAGLTSGAVKG 274
T+P+I+FVLIFQRRIVAGLTSGAVKG
Sbjct 243 TVPVILFVLIFQRRIVAGLTSGAVKG 268
>gi|118463177|ref|YP_880620.1| ABC transporter permease [Mycobacterium avium 104]
gi|118164464|gb|ABK65361.1| ABC transporter, permease protein SugB [Mycobacterium avium 104]
Length=264
Score = 442 bits (1136), Expect = 4e-122, Method: Compositional matrix adjust.
Identities = 235/264 (90%), Positives = 255/264 (97%), Gaps = 0/264 (0%)
Query 11 VLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFSSALINSI 70
++DTLVV YALLPVLWIFSLSLKPTSTVKDGKLIPS ++ +NYRGIFRGD FSSALINS+
Sbjct 1 MIDTLVVVYALLPVLWIFSLSLKPTSTVKDGKLIPSAISLENYRGIFRGDFFSSALINSV 60
Query 71 GIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFNIERAIGL 130
GIGLITT +AV+LGAMAAYAVARL+FPGKRLLIGA LLITMFP+ISLVTPLFNIER +GL
Sbjct 61 GIGLITTAVAVLLGAMAAYAVARLDFPGKRLLIGATLLITMFPAISLVTPLFNIERFLGL 120
Query 131 FDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVIVPLAAPG 190
FDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAK+DGATP QAFRKVIVPLAAPG
Sbjct 121 FDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKIDGATPAQAFRKVIVPLAAPG 180
Query 191 LVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAAGAIVITI 250
+VTAAILVFIFAWNDLLLAL+LTATKAAITAPVAI +F+GSSQFEEPTGSIAAGA+VIT+
Sbjct 181 VVTAAILVFIFAWNDLLLALTLTATKAAITAPVAIVSFSGSSQFEEPTGSIAAGAVVITV 240
Query 251 PIIVFVLIFQRRIVAGLTSGAVKG 274
P+I+FVLIFQRRIVAGLTSGAVKG
Sbjct 241 PVILFVLIFQRRIVAGLTSGAVKG 264
>gi|169628465|ref|YP_001702114.1| sugar ABC transporter permease SugB [Mycobacterium abscessus
ATCC 19977]
gi|169240432|emb|CAM61460.1| Probable sugar ABC transporter, permease protein SugB [Mycobacterium
abscessus]
Length=277
Score = 439 bits (1129), Expect = 2e-121, Method: Compositional matrix adjust.
Identities = 220/272 (81%), Positives = 245/272 (91%), Gaps = 0/272 (0%)
Query 3 ARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLF 62
+ R W + D LV+ YAL+PVLW+ SLSLKPTS+VKDGK P +T DNYRGIF G++F
Sbjct 6 SSRTAGWLIADVLVLCYALVPVLWVLSLSLKPTSSVKDGKFFPWPITLDNYRGIFSGNVF 65
Query 63 SSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLF 122
+SAL+NSIGIGLI TVIAV +G MAAYAVARL+FPGK+ LIGAALLI MFP ISLVTP+F
Sbjct 66 TSALVNSIGIGLIATVIAVSVGTMAAYAVARLDFPGKKALIGAALLIAMFPQISLVTPIF 125
Query 123 NIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKV 182
NIER++GLFDTWPGLI+PYITFALPLAIYTLSAFFREIPW+LEKAAKMDGATP QAF KV
Sbjct 126 NIERSVGLFDTWPGLIIPYITFALPLAIYTLSAFFREIPWELEKAAKMDGATPAQAFWKV 185
Query 183 IVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIA 242
I PLA PG+VT+AILVFIFAWNDLLLA+SLTAT +ITAPVAIANFTGSSQFEEPTGSIA
Sbjct 186 IAPLATPGIVTSAILVFIFAWNDLLLAISLTATDRSITAPVAIANFTGSSQFEEPTGSIA 245
Query 243 AGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG 274
AGAIVIT+PII+FVLIFQRRIVAGLTSGAVKG
Sbjct 246 AGAIVITVPIIIFVLIFQRRIVAGLTSGAVKG 277
>gi|111022953|ref|YP_705925.1| sugar ABC transporter permease [Rhodococcus jostii RHA1]
gi|226365459|ref|YP_002783242.1| ABC transporter permease protein [Rhodococcus opacus B4]
gi|110822483|gb|ABG97767.1| ABC sugar transporter, permease component [Rhodococcus jostii
RHA1]
gi|226243949|dbj|BAH54297.1| putative ABC transporter permease protein [Rhodococcus opacus
B4]
Length=278
Score = 427 bits (1097), Expect = 1e-117, Method: Compositional matrix adjust.
Identities = 212/271 (79%), Positives = 241/271 (89%), Gaps = 0/271 (0%)
Query 4 RRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFS 63
RR W+V++ LV+ YAL+PVLWI SLS KP T+KDGK IP T DNYRGIF+ + F+
Sbjct 8 RRKISWSVVNLLVLLYALVPVLWIASLSFKPAGTIKDGKFIPQKWTLDNYRGIFQTNAFT 67
Query 64 SALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFN 123
SALINSIGIGLI+TVIAVV+G MAAYA+ARL+FPGK+LL+G ALLI MFP ISLV+PLF+
Sbjct 68 SALINSIGIGLISTVIAVVIGTMAAYAIARLDFPGKKLLVGVALLIAMFPQISLVSPLFD 127
Query 124 IERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVI 183
IER +GLFDTW GLILPYITFALPLAIYTLSAFF+EIPW+LEKAAKMDGATP QAFRKV+
Sbjct 128 IERRLGLFDTWAGLILPYITFALPLAIYTLSAFFKEIPWELEKAAKMDGATPAQAFRKVV 187
Query 184 VPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAA 243
PLAAPG+VTAAILVFIF WNDLL A+SLT+T+ +ITAP AIANFTG+SQFEEPTGSIAA
Sbjct 188 APLAAPGIVTAAILVFIFCWNDLLFAISLTSTERSITAPAAIANFTGASQFEEPTGSIAA 247
Query 244 GAIVITIPIIVFVLIFQRRIVAGLTSGAVKG 274
A+VITIPII+FVL FQRRIVAGLTSGAVKG
Sbjct 248 AAMVITIPIIIFVLFFQRRIVAGLTSGAVKG 278
>gi|118473813|ref|YP_889309.1| ABC transporter permease [Mycobacterium smegmatis str. MC2 155]
gi|118175100|gb|ABK75996.1| ABC transporter, permease protein SugB [Mycobacterium smegmatis
str. MC2 155]
Length=278
Score = 423 bits (1088), Expect = 1e-116, Method: Compositional matrix adjust.
Identities = 233/274 (86%), Positives = 255/274 (94%), Gaps = 0/274 (0%)
Query 1 VGARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGD 60
V ARRAT+W+V++ LV+ YAL+PVLWI SLSLKPTS+VKDGKLIP+ +TF NY+ IF GD
Sbjct 5 VDARRATWWSVVNILVIVYALIPVLWILSLSLKPTSSVKDGKLIPTEITFANYKAIFSGD 64
Query 61 LFSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTP 120
F+SAL NSIGIGLITT+IAVV+G MAAYAVARL+FPGK+LLIG ALLI MFP ISLVTP
Sbjct 65 AFTSALFNSIGIGLITTIIAVVIGGMAAYAVARLQFPGKQLLIGVALLIAMFPHISLVTP 124
Query 121 LFNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFR 180
+FN+ R IGLFDTWPGLI+PYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATP QAFR
Sbjct 125 IFNMWRGIGLFDTWPGLIIPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPAQAFR 184
Query 181 KVIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGS 240
KVI PLAAPG+VTAAILVFIFAWNDLLLALSLTAT+ AITAPVAIANFTGSSQFEEPTGS
Sbjct 185 KVIAPLAAPGIVTAAILVFIFAWNDLLLALSLTATQRAITAPVAIANFTGSSQFEEPTGS 244
Query 241 IAAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG 274
IAAGA+VITIPII+FVLIFQRRIVAGLTSGAVKG
Sbjct 245 IAAGAMVITIPIIIFVLIFQRRIVAGLTSGAVKG 278
>gi|226307632|ref|YP_002767592.1| ABC transporter permease protein [Rhodococcus erythropolis PR4]
gi|226186749|dbj|BAH34853.1| putative ABC transporter permease protein [Rhodococcus erythropolis
PR4]
Length=276
Score = 421 bits (1081), Expect = 9e-116, Method: Compositional matrix adjust.
Identities = 211/274 (78%), Positives = 239/274 (88%), Gaps = 0/274 (0%)
Query 1 VGARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGD 60
V R W+V++ LV+ YAL+PVLWI SLS KP T+KDGK IP T DNYRGIF
Sbjct 3 VTPRLKISWSVVNLLVLLYALVPVLWIASLSFKPAGTIKDGKFIPEKWTLDNYRGIFDTS 62
Query 61 LFSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTP 120
F+SALINSIGIGLI+TVIAVV+G MAAYA+ARL+FPGK+LL+G ALLI MFP ISLV+P
Sbjct 63 AFTSALINSIGIGLISTVIAVVIGTMAAYAIARLDFPGKKLLVGVALLIAMFPQISLVSP 122
Query 121 LFNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFR 180
LF+IER +GLFDTW GLILPYITFALPLAIYTLSAFF+EIPW+LEKAA+MDGATPGQAFR
Sbjct 123 LFDIERRLGLFDTWAGLILPYITFALPLAIYTLSAFFKEIPWELEKAAQMDGATPGQAFR 182
Query 181 KVIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGS 240
KV+ PLAAPG+VTA ILVFIF WNDLL A+SLT+T+ +ITAP AIANFTG+SQFEEPTGS
Sbjct 183 KVVAPLAAPGIVTAGILVFIFCWNDLLFAISLTSTERSITAPAAIANFTGASQFEEPTGS 242
Query 241 IAAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG 274
IAA A+VITIPII+FVL FQRRIVAGLTSGAVKG
Sbjct 243 IAAAAMVITIPIIIFVLFFQRRIVAGLTSGAVKG 276
>gi|343928021|ref|ZP_08767486.1| putative ABC transporter permease protein [Gordonia alkanivorans
NBRC 16433]
gi|343762029|dbj|GAA14412.1| putative ABC transporter permease protein [Gordonia alkanivorans
NBRC 16433]
Length=276
Score = 419 bits (1077), Expect = 2e-115, Method: Compositional matrix adjust.
Identities = 219/271 (81%), Positives = 243/271 (90%), Gaps = 0/271 (0%)
Query 4 RRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFS 63
+ +W++ + LV+ YAL+P+LWI SLS KP S+V DGK IPS T DNY+ IF F+
Sbjct 6 KTKAWWSIANILVILYALIPLLWIISLSFKPASSVTDGKFIPSEFTLDNYKSIFETSAFT 65
Query 64 SALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFN 123
SALINSIG+GLITT+IAV+LG MAAYAVARLEFPGK++LIGAALLI MFP ISLVTPLFN
Sbjct 66 SALINSIGVGLITTLIAVILGTMAAYAVARLEFPGKKVLIGAALLIAMFPQISLVTPLFN 125
Query 124 IERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVI 183
IER +GLFDTWPGLILPYITFALPLAIYTLSAFFREIPW+LEKAAKMDGATP QAFRKVI
Sbjct 126 IERRLGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWELEKAAKMDGATPWQAFRKVI 185
Query 184 VPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAA 243
PLAAPG+VTAAILVFIFAWNDLLLALSLT+T+ AITAPVAIANFTGSSQFEEPTGSI+A
Sbjct 186 APLAAPGVVTAAILVFIFAWNDLLLALSLTSTERAITAPVAIANFTGSSQFEEPTGSISA 245
Query 244 GAIVITIPIIVFVLIFQRRIVAGLTSGAVKG 274
A+VITIPII+FVL FQRRIVAGLTSGAVKG
Sbjct 246 AAVVITIPIIIFVLFFQRRIVAGLTSGAVKG 276
>gi|229493741|ref|ZP_04387523.1| ABC sugar transporter, permease component [Rhodococcus erythropolis
SK121]
gi|229319341|gb|EEN85180.1| ABC sugar transporter, permease component [Rhodococcus erythropolis
SK121]
Length=276
Score = 418 bits (1075), Expect = 3e-115, Method: Compositional matrix adjust.
Identities = 210/274 (77%), Positives = 238/274 (87%), Gaps = 0/274 (0%)
Query 1 VGARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGD 60
V R W+V++ LV+ YAL+PVLWI SLS KP T+KDGK IP T DNYRGIF
Sbjct 3 VTPRLKISWSVVNLLVLLYALVPVLWIASLSFKPAGTIKDGKFIPEKWTLDNYRGIFDTS 62
Query 61 LFSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTP 120
F+SALINSIGIGLI+TVIAVV+G MAAYA+ARL+FPGK+LL+ ALLI MFP ISLV+P
Sbjct 63 AFTSALINSIGIGLISTVIAVVIGTMAAYAIARLDFPGKKLLVAVALLIAMFPQISLVSP 122
Query 121 LFNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFR 180
LF+IER +GLFDTW GLILPYITFALPLAIYTLSAFF+EIPW+LEKAA+MDGATPGQAFR
Sbjct 123 LFDIERRLGLFDTWAGLILPYITFALPLAIYTLSAFFKEIPWELEKAAQMDGATPGQAFR 182
Query 181 KVIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGS 240
KV+ PLAAPG+VTA ILVFIF WNDLL A+SLT+T+ +ITAP AIANFTG+SQFEEPTGS
Sbjct 183 KVVAPLAAPGIVTAGILVFIFCWNDLLFAISLTSTERSITAPAAIANFTGASQFEEPTGS 242
Query 241 IAAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG 274
IAA A+VITIPII+FVL FQRRIVAGLTSGAVKG
Sbjct 243 IAAAAMVITIPIIIFVLFFQRRIVAGLTSGAVKG 276
>gi|296138928|ref|YP_003646171.1| binding-protein-dependent transporters inner membrane component
[Tsukamurella paurometabola DSM 20162]
gi|296027062|gb|ADG77832.1| binding-protein-dependent transport systems inner membrane component
[Tsukamurella paurometabola DSM 20162]
Length=277
Score = 414 bits (1064), Expect = 7e-114, Method: Compositional matrix adjust.
Identities = 205/272 (76%), Positives = 232/272 (86%), Gaps = 0/272 (0%)
Query 3 ARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLF 62
A R W+ +D LV+ YAL+PVLWI SLS KP +TV DG IP T DNY IF G+ F
Sbjct 6 AGRKLAWSAIDLLVIAYALIPVLWIISLSFKPIATVGDGSFIPKNPTLDNYTAIFSGNGF 65
Query 63 SSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLF 122
LINSIGI LI+TVIAV++G AAYAVARL+FPGK+L +GAALLI MFP +SL+TPLF
Sbjct 66 VRPLINSIGIALISTVIAVIIGMFAAYAVARLQFPGKKLFVGAALLIAMFPQVSLITPLF 125
Query 123 NIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKV 182
NIER +GLF+TWPGLILPYITFALPL +YTLSAFFREIPW+LEKAAKMDGATP QAFR+V
Sbjct 126 NIERKVGLFNTWPGLILPYITFALPLTVYTLSAFFREIPWELEKAAKMDGATPAQAFRRV 185
Query 183 IVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIA 242
I PLAAPG+VTAAILVFIF WNDLL ALSLTAT A+ITAPVAI NFTGSS+FE PTGSI+
Sbjct 186 IAPLAAPGVVTAAILVFIFCWNDLLFALSLTATDASITAPVAIVNFTGSSEFETPTGSIS 245
Query 243 AGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG 274
A A+++TIPII+FVLIFQRRIVAGLTSGAVKG
Sbjct 246 AAAVIVTIPIIIFVLIFQRRIVAGLTSGAVKG 277
>gi|118619614|ref|YP_907946.1| sugar-transport integral membrane protein ABC transporter SugB
[Mycobacterium ulcerans Agy99]
gi|118571724|gb|ABL06475.1| sugar-transport integral membrane protein ABC transporter SugB
[Mycobacterium ulcerans Agy99]
Length=247
Score = 412 bits (1060), Expect = 2e-113, Method: Compositional matrix adjust.
Identities = 222/246 (91%), Positives = 234/246 (96%), Gaps = 0/246 (0%)
Query 29 SLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFSSALINSIGIGLITTVIAVVLGAMAA 88
SLS KPTSTVKDG+LIPS+VT DNYRG+F GDLFSSALINSIGIGL TTVIAV+LGAMAA
Sbjct 2 SLSPKPTSTVKDGRLIPSSVTLDNYRGVFGGDLFSSALINSIGIGLTTTVIAVLLGAMAA 61
Query 89 YAVARLEFPGKRLLIGAALLITMFPSISLVTPLFNIERAIGLFDTWPGLILPYITFALPL 148
AVARL+FPGKRLL+G LLITMFP+ISLVTPLFNIER IGLFDTWP LILPYITFALPL
Sbjct 62 CAVARLDFPGKRLLVGVTLLITMFPAISLVTPLFNIERRIGLFDTWPELILPYITFALPL 121
Query 149 AIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVIVPLAAPGLVTAAILVFIFAWNDLLL 208
AIYTLSAFFREIPWDLEKAA+MDGATP QAFRKVIVPLAAPGLVTAAILVFIFAWNDLLL
Sbjct 122 AIYTLSAFFREIPWDLEKAAQMDGATPYQAFRKVIVPLAAPGLVTAAILVFIFAWNDLLL 181
Query 209 ALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAAGAIVITIPIIVFVLIFQRRIVAGLT 268
ALSLTATKA+ITAP+AIANF GSSQFEEPTGSIAAGA+VIT+PIIVFVLIFQ RIVAGLT
Sbjct 182 ALSLTATKASITAPIAIANFAGSSQFEEPTGSIAAGAMVITVPIIVFVLIFQLRIVAGLT 241
Query 269 SGAVKG 274
SGAVKG
Sbjct 242 SGAVKG 247
>gi|262201809|ref|YP_003273017.1| binding-protein-dependent transporter inner membrane component
[Gordonia bronchialis DSM 43247]
gi|262085156|gb|ACY21124.1| binding-protein-dependent transport systems inner membrane component
[Gordonia bronchialis DSM 43247]
Length=276
Score = 410 bits (1055), Expect = 8e-113, Method: Compositional matrix adjust.
Identities = 216/273 (80%), Positives = 242/273 (89%), Gaps = 0/273 (0%)
Query 2 GARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDL 61
A+ +W++ + LV+ YA++P+LWI SLS K +TV DG IP T +NY+GIF+
Sbjct 4 SAKSKAWWSIANILVILYAVIPLLWIISLSFKSQATVLDGNFIPQEWTLENYKGIFKTSA 63
Query 62 FSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPL 121
F+SALINSIGIGLITT+IAVVLG MAAYAVARL+FPGK++LIGAALLI MFP ISLVTPL
Sbjct 64 FTSALINSIGIGLITTLIAVVLGTMAAYAVARLDFPGKKVLIGAALLIAMFPQISLVTPL 123
Query 122 FNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRK 181
FNIER +GLFDTWPGLILPYITFALPLAIYTLSAFFREIPW+LEKAAKMDGATP QAF K
Sbjct 124 FNIERRLGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWELEKAAKMDGATPWQAFSK 183
Query 182 VIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSI 241
VI PLAAPG+VTAAILVFIFAWNDLLLALSLT+T+ AITAPVAIANFTGSSQF+EPTGSI
Sbjct 184 VITPLAAPGVVTAAILVFIFAWNDLLLALSLTSTERAITAPVAIANFTGSSQFQEPTGSI 243
Query 242 AAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG 274
AA A+VITIPII+FVL FQRRIVAGLTSGAVKG
Sbjct 244 AAAAVVITIPIIIFVLFFQRRIVAGLTSGAVKG 276
>gi|257054717|ref|YP_003132549.1| carbohydrate ABC transporter membrane protein [Saccharomonospora
viridis DSM 43017]
gi|256584589|gb|ACU95722.1| carbohydrate ABC transporter membrane protein [Saccharomonospora
viridis DSM 43017]
Length=282
Score = 399 bits (1026), Expect = 2e-109, Method: Compositional matrix adjust.
Identities = 202/272 (75%), Positives = 229/272 (85%), Gaps = 0/272 (0%)
Query 3 ARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLF 62
A R WA++D +VV YAL+PVLWI SLS K T+ DG IP T DNYR IF + F
Sbjct 11 AARKARWALIDIIVVVYALVPVLWIVSLSFKTKETLADGNFIPREWTLDNYREIFATNEF 70
Query 63 SSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLF 122
L+NSIGI LI T+IAVVLG MAAYAVARL+FPGK+LLIG +LLI MFP ISLVTPLF
Sbjct 71 IRPLLNSIGIALIATLIAVVLGMMAAYAVARLDFPGKKLLIGVSLLIAMFPQISLVTPLF 130
Query 123 NIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKV 182
NIER +GLFDTWPGLILPYITFALPLAIYTLSAFFREIPW+LEKAAKMDGATPGQAFRKV
Sbjct 131 NIERELGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWELEKAAKMDGATPGQAFRKV 190
Query 183 IVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIA 242
I PLAAPG+ T+AILVFIF WND L A+SLT+T+A+ T P A++ FTG+SQFE+PTG+I+
Sbjct 191 IAPLAAPGVFTSAILVFIFCWNDFLFAISLTSTEASRTVPAALSFFTGASQFEDPTGTIS 250
Query 243 AGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG 274
A A+VITIPII+FVL FQRRIVAGLTSGAVKG
Sbjct 251 AAAVVITIPIILFVLFFQRRIVAGLTSGAVKG 282
>gi|256374956|ref|YP_003098616.1| ABC transporter inner membrane protein [Actinosynnema mirum DSM
43827]
gi|255919259|gb|ACU34770.1| binding-protein-dependent transport systems inner membrane component
[Actinosynnema mirum DSM 43827]
Length=281
Score = 399 bits (1024), Expect = 3e-109, Method: Compositional matrix adjust.
Identities = 198/270 (74%), Positives = 227/270 (85%), Gaps = 0/270 (0%)
Query 5 RATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFSS 64
R WAVL+T+VV YAL+PVLWI SLS K +T+ DG IP T +NY+ IF F
Sbjct 12 RKARWAVLNTVVVAYALIPVLWIVSLSFKTPATLADGNFIPREWTLENYQAIFTTSEFVR 71
Query 65 ALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFNI 124
AL+NSIGI LI T IAVV G MAAYA+ARL+FPGKRLL+G +LL++MFP ISLV+PLF I
Sbjct 72 ALVNSIGIALIATAIAVVFGTMAAYAIARLDFPGKRLLVGVSLLVSMFPQISLVSPLFEI 131
Query 125 ERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVIV 184
ER +GLFDTWPGLILPY TFALPLAIYTLSAFFREIPW+LEKAAKMDGATPGQAFR+VI
Sbjct 132 ERTLGLFDTWPGLILPYTTFALPLAIYTLSAFFREIPWELEKAAKMDGATPGQAFRRVIA 191
Query 185 PLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAAG 244
PLAAPG+ T AILVFIF WND L A+SLT+T+++ T PVA++ FTGSSQFE+PTGSIAA
Sbjct 192 PLAAPGVFTTAILVFIFCWNDFLFAISLTSTESSRTVPVALSFFTGSSQFEDPTGSIAAA 251
Query 245 AIVITIPIIVFVLIFQRRIVAGLTSGAVKG 274
A+VIT+PIIVFVL FQRRIVAGLTSGAVKG
Sbjct 252 AVVITVPIIVFVLFFQRRIVAGLTSGAVKG 281
>gi|330468990|ref|YP_004406733.1| binding-protein-dependent transport systems inner membrane component
[Verrucosispora maris AB-18-032]
gi|328811961|gb|AEB46133.1| binding-protein-dependent transport systems inner membrane component
[Verrucosispora maris AB-18-032]
Length=278
Score = 394 bits (1013), Expect = 6e-108, Method: Compositional matrix adjust.
Identities = 198/273 (73%), Positives = 229/273 (84%), Gaps = 1/273 (0%)
Query 3 ARRAT-YWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDL 61
ARRA W +L+ +VV +AL+PVLWI SLS K +T+ DGK IP T DNYR IF D
Sbjct 6 ARRAKLQWGLLNAVVVVFALIPVLWIMSLSFKTPATLTDGKFIPREWTLDNYRNIFGTDQ 65
Query 62 FSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPL 121
F ALINSIGI +I TVIAVVLGAMAAYA++RL+FPGKRLLIG +LLI MFP +SLV+PL
Sbjct 66 FVRALINSIGIAMIATVIAVVLGAMAAYAISRLDFPGKRLLIGVSLLIAMFPQVSLVSPL 125
Query 122 FNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRK 181
F IER +GLFDTWPGLILPYITFALPLAIYTLSAFF++IPWDLEKAAKMDGAT QAFR+
Sbjct 126 FEIERQLGLFDTWPGLILPYITFALPLAIYTLSAFFKQIPWDLEKAAKMDGATQAQAFRR 185
Query 182 VIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSI 241
VI PLAAPGL T AILVFIF WND L A+SLT+T+ + T PVA++ FTG+SQFE+PTG+I
Sbjct 186 VIAPLAAPGLFTTAILVFIFCWNDFLFAISLTSTERSRTVPVALSFFTGASQFEDPTGAI 245
Query 242 AAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG 274
A A+VIT+PII+FVL FQRRIV+GLTSGAVKG
Sbjct 246 CAAAVVITVPIILFVLFFQRRIVSGLTSGAVKG 278
>gi|326382047|ref|ZP_08203740.1| multiple sugar transport system permease protein [Gordonia neofelifaecis
NRRL B-59395]
gi|326199473|gb|EGD56654.1| multiple sugar transport system permease protein [Gordonia neofelifaecis
NRRL B-59395]
Length=276
Score = 391 bits (1005), Expect = 5e-107, Method: Compositional matrix adjust.
Identities = 216/271 (80%), Positives = 237/271 (88%), Gaps = 0/271 (0%)
Query 4 RRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFS 63
RR W V + LVV YA++P+ WI SLS KP +V DG IP TF+NY+GIF LF+
Sbjct 6 RRKVGWTVANVLVVLYAIIPLWWIISLSFKPPGSVTDGSFIPKQWTFENYKGIFDTSLFT 65
Query 64 SALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFN 123
SALINSIGIGLITTVIAVVLG MAAYAVARLEF GK++LIGAALLI MFP ISLVTPLFN
Sbjct 66 SALINSIGIGLITTVIAVVLGTMAAYAVARLEFRGKKVLIGAALLIAMFPQISLVTPLFN 125
Query 124 IERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVI 183
IER +GLFDTW GLILPY+ FALPLAIYTLSAFFREIPWDLEKAA+MDGATP QAFR+VI
Sbjct 126 IERRLGLFDTWLGLILPYVAFALPLAIYTLSAFFREIPWDLEKAAQMDGATPSQAFRRVI 185
Query 184 VPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAA 243
VPLAAPG+VTAAILVFIFAWNDLLLALSLT+T+ A TAPVAI+ FTGSSQFEEPTG+IAA
Sbjct 186 VPLAAPGVVTAAILVFIFAWNDLLLALSLTSTENAETAPVAISQFTGSSQFEEPTGAIAA 245
Query 244 GAIVITIPIIVFVLIFQRRIVAGLTSGAVKG 274
A+VITIPII+FVL FQRRIVAGLTSGAVKG
Sbjct 246 AAVVITIPIIIFVLFFQRRIVAGLTSGAVKG 276
>gi|331694916|ref|YP_004331155.1| ABC transporter integral membrane subunit [Pseudonocardia dioxanivorans
CB1190]
gi|326949605|gb|AEA23302.1| ABC-type transporter, integral membrane subunit [Pseudonocardia
dioxanivorans CB1190]
Length=278
Score = 390 bits (1003), Expect = 9e-107, Method: Compositional matrix adjust.
Identities = 197/272 (73%), Positives = 229/272 (85%), Gaps = 0/272 (0%)
Query 3 ARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLF 62
A + W +++ LV+ YAL+PVLWI SLS K T+ DG IP + T+ NY IF+ +LF
Sbjct 7 ANKKIGWGLINLLVILYALIPVLWIVSLSFKTADTITDGNFIPRSWTWSNYAQIFQINLF 66
Query 63 SSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLF 122
+SAL NSIGI LI+TVIAVV+G MAAYA+ARL+FPGK+ L+G +LLI MFP ISLV+PLF
Sbjct 67 TSALRNSIGIALISTVIAVVIGTMAAYAIARLDFPGKKALVGVSLLIAMFPQISLVSPLF 126
Query 123 NIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKV 182
+IERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPW+LEKAAKMDGATP QAFR V
Sbjct 127 DIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWELEKAAKMDGATPLQAFRSV 186
Query 183 IVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIA 242
IVPLAAPG+ T AILVFIF WND L A+SLT+T + TA VAI+ FTG+SQF EPTGSIA
Sbjct 187 IVPLAAPGVFTTAILVFIFCWNDFLFAVSLTSTSRSQTATVAISQFTGASQFAEPTGSIA 246
Query 243 AGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG 274
A A+++TIPII+FVL FQRRIVAGLTSGAVKG
Sbjct 247 AAAVLLTIPIIIFVLFFQRRIVAGLTSGAVKG 278
>gi|300783010|ref|YP_003763301.1| sugar ABC transporter permease [Amycolatopsis mediterranei U32]
gi|299792524|gb|ADJ42899.1| permease component of ABC-type sugar transport system [Amycolatopsis
mediterranei U32]
gi|340524387|gb|AEK39592.1| sugar ABC transporter permease [Amycolatopsis mediterranei S699]
Length=279
Score = 388 bits (997), Expect = 4e-106, Method: Compositional matrix adjust.
Identities = 193/270 (72%), Positives = 224/270 (83%), Gaps = 0/270 (0%)
Query 5 RATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFSS 64
R W ++D LV+ +AL+PVLW+ SLS K T+ DG IP T+ NY IF+ F
Sbjct 10 RKVRWGLVDILVLVFALVPVLWVVSLSFKTKDTITDGSFIPQAWTWQNYADIFQTSEFLL 69
Query 65 ALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFNI 124
AL+NSIGI +I+TVIAVVLG MAAYAVARL+FPGK++L+G +LLI MFP +SLVTPLFNI
Sbjct 70 ALVNSIGIAIISTVIAVVLGTMAAYAVARLDFPGKQVLVGLSLLIAMFPQVSLVTPLFNI 129
Query 125 ERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVIV 184
ER IGLFDTWPGLILPYITFALPL+IYTLSAFFREIPW+LEKAAKMDGATP QAFR+VI
Sbjct 130 ERNIGLFDTWPGLILPYITFALPLSIYTLSAFFREIPWELEKAAKMDGATPAQAFRRVIA 189
Query 185 PLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAAG 244
PLAAPG+ T AILVFIF WND L A+SLT+T A+ T P A++ FTGSSQFE+PTG ++A
Sbjct 190 PLAAPGVFTTAILVFIFCWNDFLFAISLTSTTASRTVPAALSFFTGSSQFEDPTGQVSAA 249
Query 245 AIVITIPIIVFVLIFQRRIVAGLTSGAVKG 274
A+VITIPIIVFVL FQRRIVAGLTSGAVKG
Sbjct 250 AVVITIPIIVFVLFFQRRIVAGLTSGAVKG 279
>gi|238060004|ref|ZP_04604713.1| ABC sugar transporter permease component [Micromonospora sp.
ATCC 39149]
gi|237881815|gb|EEP70643.1| ABC sugar transporter permease component [Micromonospora sp.
ATCC 39149]
Length=283
Score = 387 bits (994), Expect = 9e-106, Method: Compositional matrix adjust.
Identities = 190/271 (71%), Positives = 224/271 (83%), Gaps = 0/271 (0%)
Query 4 RRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFS 63
R W +LD +VV +AL+PVLWI SLS K +T+ DG+ P T DNYR IF D F
Sbjct 13 RAKLRWGLLDVIVVVFALVPVLWIASLSFKTPATLTDGRFWPREWTLDNYRSIFDTDQFV 72
Query 64 SALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFN 123
AL+NS+GI LI T++AVVLGAMAAYA++RL+FPGK+LL+G ALLI MFP +SLV+PLF
Sbjct 73 RALVNSVGIALIATLVAVVLGAMAAYAISRLDFPGKKLLVGVALLIAMFPQVSLVSPLFE 132
Query 124 IERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVI 183
IER +GLFDTWPGLILPYITFALPLAIYTLSAFF++IPWDLEKAAKMDGAT GQAFR+VI
Sbjct 133 IERQLGLFDTWPGLILPYITFALPLAIYTLSAFFKQIPWDLEKAAKMDGATQGQAFRRVI 192
Query 184 VPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAA 243
PLAAPGL T AILVFIF WND L A++LT+T+ A T PVA++ FTG SQFE+PTG+I A
Sbjct 193 APLAAPGLFTTAILVFIFCWNDFLFAITLTSTERARTVPVALSFFTGESQFEDPTGAICA 252
Query 244 GAIVITIPIIVFVLIFQRRIVAGLTSGAVKG 274
A+VIT+PI+ FVL FQRRIV+GLTSGAVKG
Sbjct 253 AAVVITVPIVAFVLFFQRRIVSGLTSGAVKG 283
>gi|134097643|ref|YP_001103304.1| ABC sugar transporter, permease component [Saccharopolyspora
erythraea NRRL 2338]
gi|291008813|ref|ZP_06566786.1| ABC sugar transporter, permease component [Saccharopolyspora
erythraea NRRL 2338]
gi|133910266|emb|CAM00379.1| ABC sugar transporter, permease component [Saccharopolyspora
erythraea NRRL 2338]
Length=281
Score = 385 bits (990), Expect = 3e-105, Method: Compositional matrix adjust.
Identities = 196/270 (73%), Positives = 222/270 (83%), Gaps = 0/270 (0%)
Query 5 RATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFSS 64
R W VL+ +VV YALLPVLWI SLS K +T+ DG LIP T +NY IF F+
Sbjct 12 RKAGWTVLNIVVVIYALLPVLWILSLSFKTPATLGDGSLIPREWTLENYAAIFSTTEFTR 71
Query 65 ALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFNI 124
AL+NSIGI LI T IAVVLG MAAYA+ARLEFPGKRLL+G +LLI MFP +SLV+PLF I
Sbjct 72 ALLNSIGIALIATAIAVVLGTMAAYAIARLEFPGKRLLVGVSLLIAMFPQVSLVSPLFEI 131
Query 125 ERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVIV 184
ER +GLFD+W GLILPYITF+LPLAIYTLSAFFREIPW+LEKAAKMDGATPGQAF KVI
Sbjct 132 ERTLGLFDSWTGLILPYITFSLPLAIYTLSAFFREIPWELEKAAKMDGATPGQAFAKVIA 191
Query 185 PLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAAG 244
PLAAPG+ T AILVFIF WND L A+SLT+T+ + T PVA+ FTG SQFE+PTGSI+A
Sbjct 192 PLAAPGVFTTAILVFIFCWNDFLFAISLTSTENSRTVPVALQFFTGDSQFEDPTGSISAA 251
Query 245 AIVITIPIIVFVLIFQRRIVAGLTSGAVKG 274
A+VITIPIIVFVL FQRRIV+GLTSGAVKG
Sbjct 252 AVVITIPIIVFVLFFQRRIVSGLTSGAVKG 281
>gi|302524365|ref|ZP_07276707.1| ABC sugar transporter [Streptomyces sp. AA4]
gi|302433260|gb|EFL05076.1| ABC sugar transporter [Streptomyces sp. AA4]
Length=280
Score = 383 bits (983), Expect = 2e-104, Method: Compositional matrix adjust.
Identities = 187/270 (70%), Positives = 224/270 (83%), Gaps = 0/270 (0%)
Query 5 RATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFSS 64
R W +LD LV+ +A++PVLW+ SLS K +T+ DG IP+ T NY IF+ F
Sbjct 11 RKVGWGLLDILVLVFAIVPVLWVLSLSFKTKATLTDGNFIPTEWTLKNYADIFQTTEFLH 70
Query 65 ALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFNI 124
AL+NSIGI +I+T+IAVVLG MAAYA+ARL+FPGK++L+G +LLI MFP +SLVTPLFNI
Sbjct 71 ALVNSIGIAVISTLIAVVLGTMAAYAIARLDFPGKQVLVGLSLLIAMFPQVSLVTPLFNI 130
Query 125 ERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVIV 184
ER +GLFDTWPGLILPYITFALPL+IYTLSAFFREIPW+LEKAAKMDGATP QAFRKVI
Sbjct 131 ERGLGLFDTWPGLILPYITFALPLSIYTLSAFFREIPWELEKAAKMDGATPAQAFRKVIA 190
Query 185 PLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAAG 244
PLAAPG+ T AILVFI WND L A+SLT+T+++ T P A++ FTGSSQFE+PTG + A
Sbjct 191 PLAAPGVFTTAILVFILCWNDFLFAISLTSTESSRTVPAALSFFTGSSQFEDPTGQVCAA 250
Query 245 AIVITIPIIVFVLIFQRRIVAGLTSGAVKG 274
A+VIT+PII+FVL FQRRIVAGLTSGAVKG
Sbjct 251 AVVITVPIILFVLFFQRRIVAGLTSGAVKG 280
>gi|302562113|ref|ZP_07314455.1| sugar ABC transporter, permease [Streptomyces griseoflavus Tu4000]
gi|302479731|gb|EFL42824.1| sugar ABC transporter, permease [Streptomyces griseoflavus Tu4000]
Length=277
Score = 380 bits (975), Expect = 2e-103, Method: Compositional matrix adjust.
Identities = 200/273 (74%), Positives = 225/273 (83%), Gaps = 0/273 (0%)
Query 2 GARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDL 61
G AT W V++ +VV YAL PV WI +LS K +T+ DG IP T +NYRGIF
Sbjct 5 GRTHATRWVVVNVVVVLYALFPVWWIAALSFKDPATLTDGDYIPRDWTLENYRGIFATSE 64
Query 62 FSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPL 121
F+ AL+NSIGI LI TVIAV LG MAAYAVARL FPGKRLLIG +LLI MFP ISLV+PL
Sbjct 65 FTRALVNSIGIALIATVIAVALGTMAAYAVARLRFPGKRLLIGMSLLIAMFPPISLVSPL 124
Query 122 FNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRK 181
F+IER IG+FDTW GLI+PY+TF+LPLAIYTLSAFFREIPWDLEKAAK+DGATP QAFR
Sbjct 125 FDIERTIGIFDTWLGLIIPYMTFSLPLAIYTLSAFFREIPWDLEKAAKVDGATPAQAFRL 184
Query 182 VIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSI 241
VIVPLAAPG+ T AILVFIF WND L A+SLT+T++A T P AIA FTGSSQF +PTGSI
Sbjct 185 VIVPLAAPGVFTTAILVFIFCWNDFLFAISLTSTESARTVPAAIAFFTGSSQFAQPTGSI 244
Query 242 AAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG 274
AA A+VITIPIIVFVL+FQRRIVAGLTSGAVKG
Sbjct 245 AAAAVVITIPIIVFVLLFQRRIVAGLTSGAVKG 277
>gi|291435774|ref|ZP_06575164.1| binding-protein-dependent transport systems inner membrane component
[Streptomyces ghanaensis ATCC 14672]
gi|291338669|gb|EFE65625.1| binding-protein-dependent transport systems inner membrane component
[Streptomyces ghanaensis ATCC 14672]
Length=277
Score = 378 bits (970), Expect = 7e-103, Method: Compositional matrix adjust.
Identities = 195/273 (72%), Positives = 226/273 (83%), Gaps = 0/273 (0%)
Query 2 GARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDL 61
G AT W V++ +VV YAL PV WI +LS K T+ DG IP T++NYRGIF
Sbjct 5 GRTHATRWGVVNVVVVLYALFPVWWIAALSFKDPGTLTDGDYIPRKWTWENYRGIFETSE 64
Query 62 FSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPL 121
F+ AL+NSIGI LI T IAV LG MAAYAVARL FPGK++LIG +LLI MFP ISLV+PL
Sbjct 65 FTRALVNSIGIALIATTIAVALGTMAAYAVARLRFPGKQVLIGMSLLIAMFPPISLVSPL 124
Query 122 FNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRK 181
F+IER+IG+FDTW GLI+PY+TF+LPLAIYTLSAFFREIPWDLEKAAK+DGATP QAFR
Sbjct 125 FDIERSIGIFDTWLGLIIPYMTFSLPLAIYTLSAFFREIPWDLEKAAKVDGATPAQAFRM 184
Query 182 VIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSI 241
VIVPLAAPG+ T AILVFIF WND L A+SLT+T++A T P AIA FTGSSQF++PTGSI
Sbjct 185 VIVPLAAPGVFTTAILVFIFCWNDFLFAISLTSTESARTVPAAIAFFTGSSQFQQPTGSI 244
Query 242 AAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG 274
AA A+VIT+PI+VFVL+FQRRIVAGLTSGAVKG
Sbjct 245 AAAAVVITVPIVVFVLLFQRRIVAGLTSGAVKG 277
>gi|312197859|ref|YP_004017920.1| binding-protein-dependent transport systems inner membrane component
[Frankia sp. EuI1c]
gi|311229195|gb|ADP82050.1| binding-protein-dependent transport systems inner membrane component
[Frankia sp. EuI1c]
Length=295
Score = 377 bits (968), Expect = 9e-103, Method: Compositional matrix adjust.
Identities = 185/266 (70%), Positives = 225/266 (85%), Gaps = 0/266 (0%)
Query 9 WAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFSSALIN 68
W+V + +++ +L+P+LW+ SLS K ST+ DG IP T T +NYRGIF LF+ AL+N
Sbjct 30 WSVANLVIIAISLVPMLWLVSLSFKAPSTITDGHFIPRTWTLENYRGIFTESLFTRALLN 89
Query 69 SIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFNIERAI 128
S+GI LI+TV+AV LG+MAAYA+ARLEFPGKRLL+G ALLI MFP +SLV+PLFN+ R I
Sbjct 90 SLGIALISTVLAVALGSMAAYAIARLEFPGKRLLVGLALLIAMFPQVSLVSPLFNVWRQI 149
Query 129 GLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVIVPLAA 188
G+FDTW GLI+PY+TF+LPLAIYTLSAFFREIPWDLEKAA++DGATP QAF +VI PLAA
Sbjct 150 GIFDTWVGLIIPYLTFSLPLAIYTLSAFFREIPWDLEKAAQVDGATPLQAFLRVIAPLAA 209
Query 189 PGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAAGAIVI 248
PG+VT AILVFIF WND L ++SLT+T+ + T P AIA FTG+SQF +P GSIAA A+VI
Sbjct 210 PGMVTTAILVFIFCWNDFLFSISLTSTERSRTVPAAIAFFTGASQFAQPIGSIAAAAVVI 269
Query 249 TIPIIVFVLIFQRRIVAGLTSGAVKG 274
TIPII+FVL+FQRRIVAGLTSGAVKG
Sbjct 270 TIPIIIFVLLFQRRIVAGLTSGAVKG 295
>gi|213966430|ref|ZP_03394607.1| ABC sugar transporter, permease component [Corynebacterium amycolatum
SK46]
gi|213950923|gb|EEB62328.1| ABC sugar transporter, permease component [Corynebacterium amycolatum
SK46]
Length=279
Score = 374 bits (961), Expect = 6e-102, Method: Compositional matrix adjust.
Identities = 196/271 (73%), Positives = 232/271 (86%), Gaps = 0/271 (0%)
Query 4 RRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFS 63
++ W + LVV YAL+PVLWI SLS KPT+ + DG IP T DNYRGIF+ F+
Sbjct 9 KQRVAWTIGIALVVIYALVPVLWIASLSFKPTTDLHDGHFIPRNWTLDNYRGIFQTSEFT 68
Query 64 SALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFN 123
AL NSIGIGLITT++AV++G MAAYA+ARLEFPGK +++G +LLI MFP +SLV+PLF+
Sbjct 69 RALFNSIGIGLITTLLAVIVGTMAAYAIARLEFPGKSVILGVSLLIAMFPQVSLVSPLFD 128
Query 124 IERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVI 183
IER +GLFDTWPGLILPYITFALP+AI+ LS+FFREIPW+LEKAA+MDGATP QAFR V+
Sbjct 129 IERKLGLFDTWPGLILPYITFALPMAIFILSSFFREIPWELEKAAQMDGATPFQAFRLVV 188
Query 184 VPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAA 243
PLA PG+VTAAILVFIFAWND LLA+SLT+T+ A TAP A+ANFTGSSQF+EPTGSIAA
Sbjct 189 APLAIPGIVTAAILVFIFAWNDFLLAVSLTSTEVARTAPAAMANFTGSSQFDEPTGSIAA 248
Query 244 GAIVITIPIIVFVLIFQRRIVAGLTSGAVKG 274
AIVITIPI++FV+IFQRRIVAGLTSGAVKG
Sbjct 249 AAIVITIPIVIFVVIFQRRIVAGLTSGAVKG 279
>gi|158316384|ref|YP_001508892.1| binding-protein-dependent transport systems inner membrane component
[Frankia sp. EAN1pec]
gi|158111789|gb|ABW13986.1| binding-protein-dependent transport systems inner membrane component
[Frankia sp. EAN1pec]
Length=295
Score = 372 bits (955), Expect = 3e-101, Method: Compositional matrix adjust.
Identities = 184/266 (70%), Positives = 223/266 (84%), Gaps = 0/266 (0%)
Query 9 WAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFSSALIN 68
W+ + ++VG +L+P+LW+ SLS K +++ DG IP TF+NYR IF LF+ AL+N
Sbjct 30 WSAANLVIVGMSLVPLLWLVSLSFKTPASITDGSFIPREWTFENYREIFGESLFTRALLN 89
Query 69 SIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFNIERAI 128
S+GI LI+T +AVVLG+MAAYA+ARL FPGKRLL+G ALLI MFP ISLV+PLFN+ R I
Sbjct 90 SLGIALISTALAVVLGSMAAYAIARLAFPGKRLLVGLALLIAMFPQISLVSPLFNLWRQI 149
Query 129 GLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVIVPLAA 188
G+FDTW GLI+PY+TF+LPLAIYTLSAFFREIPWDLEKAA++DGATP QAF +VI PLAA
Sbjct 150 GIFDTWLGLIIPYLTFSLPLAIYTLSAFFREIPWDLEKAAQVDGATPRQAFLRVIAPLAA 209
Query 189 PGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAAGAIVI 248
PG+VT AILVFIF WND L A+SLT+T+ + T P AIA FTG+SQF +P GSIAA A+VI
Sbjct 210 PGMVTTAILVFIFCWNDFLFAISLTSTEQSRTVPAAIAFFTGASQFAQPIGSIAAAAVVI 269
Query 249 TIPIIVFVLIFQRRIVAGLTSGAVKG 274
TIPII+FVL+FQRRIVAGLTSGAVKG
Sbjct 270 TIPIIIFVLLFQRRIVAGLTSGAVKG 295
>gi|291298568|ref|YP_003509846.1| binding-protein-dependent transporter inner membrane component
[Stackebrandtia nassauensis DSM 44728]
gi|290567788|gb|ADD40753.1| binding-protein-dependent transport systems inner membrane component
[Stackebrandtia nassauensis DSM 44728]
Length=273
Score = 372 bits (954), Expect = 5e-101, Method: Compositional matrix adjust.
Identities = 179/270 (67%), Positives = 224/270 (83%), Gaps = 0/270 (0%)
Query 5 RATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFSS 64
+ W VLD +V+ +AL+PV W+ SLSLK ST+ DG +PS TFDNY +F F
Sbjct 4 KKAQWTVLDLVVIAFALIPVAWLTSLSLKDPSTIADGGFLPSKWTFDNYVNVFTDGGFLQ 63
Query 65 ALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFNI 124
L+NSIGI LI+T +A++LG AAYA+ARLEFPG+ +++GAALL+ MFP +SLVTPLFNI
Sbjct 64 PLVNSIGIALISTFVAILLGTFAAYAIARLEFPGRNIMLGAALLVAMFPQVSLVTPLFNI 123
Query 125 ERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVIV 184
ER +GLF+TWPGLILPY+TFALPL IYT+S FFREIPW+LEKAAKMDGA+ QAFRKVIV
Sbjct 124 ERNLGLFNTWPGLILPYVTFALPLTIYTMSTFFREIPWELEKAAKMDGASGFQAFRKVIV 183
Query 185 PLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAAG 244
PLA PG+VTAA+L FI +WND L A+SLT+T+ A TAP AI+ FTG+SQFE+PTGS++A
Sbjct 184 PLATPGVVTAAVLAFIQSWNDFLFAISLTSTERARTAPAAISFFTGASQFEDPTGSVSAA 243
Query 245 AIVITIPIIVFVLIFQRRIVAGLTSGAVKG 274
A+++TIPI++FVLIFQRRIV+GLT+GAVKG
Sbjct 244 AVIVTIPIVIFVLIFQRRIVSGLTAGAVKG 273
>gi|302868629|ref|YP_003837266.1| binding-protein-dependent transport systems inner membrane component
[Micromonospora aurantiaca ATCC 27029]
gi|315504899|ref|YP_004083786.1| binding-protein-dependent transport systems inner membrane component
[Micromonospora sp. L5]
gi|302571488|gb|ADL47690.1| binding-protein-dependent transport systems inner membrane component
[Micromonospora aurantiaca ATCC 27029]
gi|315411518|gb|ADU09635.1| binding-protein-dependent transport systems inner membrane component
[Micromonospora sp. L5]
Length=278
Score = 364 bits (934), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 179/249 (72%), Positives = 207/249 (84%), Gaps = 0/249 (0%)
Query 26 WIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFSSALINSIGIGLITTVIAVVLGA 85
WI SLS K +T+ DGK P T DNYR IF D F AL+NSIGI LI T IAVVLG
Sbjct 30 WIASLSFKTPATLTDGKFWPREWTLDNYRTIFDTDQFVRALVNSIGIALIATAIAVVLGT 89
Query 86 MAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFNIERAIGLFDTWPGLILPYITFA 145
MAAYA++RL+FPGK+LL+G +LLI MFP +SLV+PLF IER +GLFDTWPGLILPYITFA
Sbjct 90 MAAYAISRLDFPGKKLLVGVSLLIAMFPQVSLVSPLFEIERQLGLFDTWPGLILPYITFA 149
Query 146 LPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVIVPLAAPGLVTAAILVFIFAWND 205
LPLAIYTLSAFF++IPWDLEKAAKMDGAT GQAFR+VI PLAAPG+ T AILVFIF WND
Sbjct 150 LPLAIYTLSAFFKQIPWDLEKAAKMDGATQGQAFRRVIAPLAAPGVFTTAILVFIFCWND 209
Query 206 LLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAAGAIVITIPIIVFVLIFQRRIVA 265
L A++LT+T+ + T PVA+ FTG SQFE+PTG+I A A+VIT+PII+FVL FQRRIV+
Sbjct 210 FLFAITLTSTERSRTVPVALQFFTGESQFEDPTGAICAAAVVITVPIILFVLFFQRRIVS 269
Query 266 GLTSGAVKG 274
GLTSGAVKG
Sbjct 270 GLTSGAVKG 278
>gi|111223173|ref|YP_713967.1| sugar ABC transporter membrane protein [Frankia alni ACN14a]
gi|111150705|emb|CAJ62406.1| putative sugar transport protein (ABC superfamily, membrane)
[Frankia alni ACN14a]
Length=245
Score = 350 bits (898), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 176/245 (72%), Positives = 210/245 (86%), Gaps = 0/245 (0%)
Query 30 LSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFSSALINSIGIGLITTVIAVVLGAMAAY 89
+S K ++V DG+ +P T++NYRGIF LF+ AL+NS+GI LI+TV+AVV+GAMAAY
Sbjct 1 MSFKTPASVGDGRFVPRHWTWENYRGIFDASLFTRALVNSVGIALISTVLAVVVGAMAAY 60
Query 90 AVARLEFPGKRLLIGAALLITMFPSISLVTPLFNIERAIGLFDTWPGLILPYITFALPLA 149
AVARL FPG+RLL+G ALLI MFP ISLV+PLFN+ R IG+FDTW GLI+PY+TF+LPLA
Sbjct 61 AVARLVFPGRRLLVGLALLIAMFPQISLVSPLFNLWRQIGIFDTWIGLIVPYLTFSLPLA 120
Query 150 IYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVIVPLAAPGLVTAAILVFIFAWNDLLLA 209
IYTLSAFFREIP DLE+AA +DGA+P QAF +VIVPLAAPGLVT AILVFIF WND L A
Sbjct 121 IYTLSAFFREIPRDLERAAAVDGASPWQAFTRVIVPLAAPGLVTTAILVFIFCWNDFLFA 180
Query 210 LSLTATKAAITAPVAIANFTGSSQFEEPTGSIAAGAIVITIPIIVFVLIFQRRIVAGLTS 269
+SLT+T+++ T P AIA FTG+SQF +P GSIAA A+VITIPIIVFVL+FQRRIVAGLTS
Sbjct 181 ISLTSTESSRTVPAAIAFFTGASQFTQPIGSIAAAAVVITIPIIVFVLVFQRRIVAGLTS 240
Query 270 GAVKG 274
GAVKG
Sbjct 241 GAVKG 245
>gi|77163815|ref|YP_342340.1| ABC transporter, inner membrane subunit [Nitrosococcus oceani
ATCC 19707]
gi|76882129|gb|ABA56810.1| carbohydrate ABC transporter membrane protein 2, CUT1 family
[Nitrosococcus oceani ATCC 19707]
Length=280
Score = 349 bits (896), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 175/267 (66%), Positives = 218/267 (82%), Gaps = 0/267 (0%)
Query 8 YWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFSSALI 67
+W +V+ YAL+PV+WI SLSLK + + D + P+TV+F++Y+ IF+ F +AL
Sbjct 14 FWGASSLIVMVYALIPVIWIISLSLKRGADLNDNRFFPATVSFEHYQAIFQDPQFPAALW 73
Query 68 NSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFNIERA 127
NSIGIG I+T++AV+L AAYA+ RLEFPGKRL++ AL I MFP I+++ PLFN+ R
Sbjct 74 NSIGIGAISTLLAVLLAMFAAYAIVRLEFPGKRLILSGALAIAMFPPIAIIGPLFNLWRQ 133
Query 128 IGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVIVPLA 187
IGLFDTW GLILPY+TF LPLAI+TLSAFF+EIPWDL+KAA++DGATP QAFRKVIVPLA
Sbjct 134 IGLFDTWLGLILPYMTFTLPLAIWTLSAFFKEIPWDLDKAARVDGATPFQAFRKVIVPLA 193
Query 188 APGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAAGAIV 247
APG+ TAAILVFIFAWND L A+SLT+T A T P AIA FTG+S+FE P GSIAA ++V
Sbjct 194 APGVFTAAILVFIFAWNDFLFAMSLTSTAQARTVPAAIAFFTGTSRFELPVGSIAAASVV 253
Query 248 ITIPIIVFVLIFQRRIVAGLTSGAVKG 274
+T+PI+V VLIFQRRIVAGLT+GAVKG
Sbjct 254 VTLPIVVIVLIFQRRIVAGLTAGAVKG 280
>gi|254436228|ref|ZP_05049735.1| ABC transporter, permease protein, putative [Nitrosococcus oceani
AFC27]
gi|207089339|gb|EDZ66611.1| ABC transporter, permease protein, putative [Nitrosococcus oceani
AFC27]
Length=272
Score = 349 bits (896), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 175/267 (66%), Positives = 218/267 (82%), Gaps = 0/267 (0%)
Query 8 YWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFSSALI 67
+W +V+ YAL+PV+WI SLSLK + + D + P+TV+F++Y+ IF+ F +AL
Sbjct 6 FWGASSLIVMVYALIPVIWIISLSLKRGADLNDNRFFPATVSFEHYQAIFQDPQFPAALW 65
Query 68 NSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFNIERA 127
NSIGIG I+T++AV+L AAYA+ RLEFPGKRL++ AL I MFP I+++ PLFN+ R
Sbjct 66 NSIGIGAISTLLAVLLAMFAAYAIVRLEFPGKRLILSGALAIAMFPPIAIIGPLFNLWRQ 125
Query 128 IGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVIVPLA 187
IGLFDTW GLILPY+TF LPLAI+TLSAFF+EIPWDL+KAA++DGATP QAFRKVIVPLA
Sbjct 126 IGLFDTWLGLILPYMTFTLPLAIWTLSAFFKEIPWDLDKAARVDGATPFQAFRKVIVPLA 185
Query 188 APGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAAGAIV 247
APG+ TAAILVFIFAWND L A+SLT+T A T P AIA FTG+S+FE P GSIAA ++V
Sbjct 186 APGVFTAAILVFIFAWNDFLFAMSLTSTAQARTVPAAIAFFTGTSRFELPVGSIAAASVV 245
Query 248 ITIPIIVFVLIFQRRIVAGLTSGAVKG 274
+T+PI+V VLIFQRRIVAGLT+GAVKG
Sbjct 246 VTLPIVVIVLIFQRRIVAGLTAGAVKG 272
>gi|292491691|ref|YP_003527130.1| binding-protein-dependent transporters inner membrane component
[Nitrosococcus halophilus Nc4]
gi|291580286|gb|ADE14743.1| binding-protein-dependent transport systems inner membrane component
[Nitrosococcus halophilus Nc4]
Length=281
Score = 348 bits (894), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 174/267 (66%), Positives = 216/267 (81%), Gaps = 0/267 (0%)
Query 8 YWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFSSALI 67
+W +V+ YAL+PV WI SLSLK + + D + P T++F++Y+ IF+ F +AL
Sbjct 15 FWGSGSVVVIIYALIPVAWIISLSLKRGADLNDNRFFPRTLSFEHYQAIFQDPQFPAALW 74
Query 68 NSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFNIERA 127
NS+GIG I+T+ AV+L AAYA+ RLEFPGKR+++ AL I MFP I+++ PLFN+ R
Sbjct 75 NSVGIGAISTLFAVILAMFAAYAIVRLEFPGKRIILSGALAIAMFPPIAIIGPLFNLWRQ 134
Query 128 IGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVIVPLA 187
IGLFDTW GLILPY+TF LPLAI+TLSAFFREIPWDL+KAA++DGATP QAFRKVIVPLA
Sbjct 135 IGLFDTWLGLILPYMTFTLPLAIWTLSAFFREIPWDLDKAARVDGATPFQAFRKVIVPLA 194
Query 188 APGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAAGAIV 247
APG+ TAAILVFIFAWND L A+SLT+T A T P AIA FTG+S+FE PTGSIAA ++V
Sbjct 195 APGVFTAAILVFIFAWNDFLFAISLTSTNQARTVPAAIAFFTGASRFELPTGSIAAASVV 254
Query 248 ITIPIIVFVLIFQRRIVAGLTSGAVKG 274
+T+PI++ VLIFQRRIVAGLTSGAVKG
Sbjct 255 VTLPIVIIVLIFQRRIVAGLTSGAVKG 281
>gi|291302104|ref|YP_003513382.1| binding-protein-dependent transporter inner membrane component
[Stackebrandtia nassauensis DSM 44728]
gi|290571324|gb|ADD44289.1| binding-protein-dependent transport systems inner membrane component
[Stackebrandtia nassauensis DSM 44728]
Length=273
Score = 343 bits (881), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 180/266 (68%), Positives = 216/266 (82%), Gaps = 0/266 (0%)
Query 9 WAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFSSALIN 68
W++L+T+VV +AL+PVLW+ SLSLK ST DG P TFDNY +F F LIN
Sbjct 8 WSLLNTVVVAFALIPVLWLVSLSLKHPSTYTDGNFFPVKPTFDNYVNVFSSGGFFQPLIN 67
Query 69 SIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFNIERAI 128
SIGI LI T IA+++G AAYA+ARL FPG+ L++GAALL+ MFP +SLVTPLF IER +
Sbjct 68 SIGISLIATGIALLVGTFAAYAIARLNFPGRNLMLGAALLVAMFPQVSLVTPLFEIERNL 127
Query 129 GLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVIVPLAA 188
GLF+TW GLILPY+TFALPL IYT+ +FFREIPW+LEKAAKMDGATP QAFRKVIVPLA
Sbjct 128 GLFNTWLGLILPYVTFALPLTIYTMQSFFREIPWELEKAAKMDGATPFQAFRKVIVPLAT 187
Query 189 PGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAAGAIVI 248
PG+VTA++L FI WND L A+SLT+T A TAP AI+ FTG+SQFE P GSIAA A++I
Sbjct 188 PGVVTASVLAFIQVWNDFLFAISLTSTDNARTAPAAISFFTGASQFENPVGSIAAAAVII 247
Query 249 TIPIIVFVLIFQRRIVAGLTSGAVKG 274
TIPI++FVLIFQRRIV+GLT+GAVKG
Sbjct 248 TIPIVIFVLIFQRRIVSGLTAGAVKG 273
>gi|300113097|ref|YP_003759672.1| binding-protein-dependent transport systems inner membrane component
[Nitrosococcus watsonii C-113]
gi|299539034|gb|ADJ27351.1| binding-protein-dependent transport systems inner membrane component
[Nitrosococcus watsonii C-113]
Length=281
Score = 342 bits (878), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 172/267 (65%), Positives = 215/267 (81%), Gaps = 0/267 (0%)
Query 8 YWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFSSALI 67
+W +V+ YAL+PV WI SLSLK + + D + P+TV+F++Y+ IF+ F +AL
Sbjct 15 FWDSGSIIVMVYALIPVAWIISLSLKRGADLNDHRFFPATVSFEHYQAIFQDPQFPAALW 74
Query 68 NSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFNIERA 127
NS+GIG I+T++AV+L AAYA+ RLEFPGKRL++ AL + MFP I+++ PLFN+ R
Sbjct 75 NSVGIGAISTLLAVLLAMFAAYAIVRLEFPGKRLILSGALAVAMFPPIAIMGPLFNLWRQ 134
Query 128 IGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVIVPLA 187
IGLFDTW GLILPY+TF LPLAI+TLS FFREIPWDL+KAA++DGATP QAF KVIVPLA
Sbjct 135 IGLFDTWLGLILPYMTFTLPLAIWTLSTFFREIPWDLDKAARVDGATPFQAFCKVIVPLA 194
Query 188 APGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAAGAIV 247
APG+ TAAILVFIFAWND L A+SLT+T A T P AIA F G+S+FE PTGSIAA ++V
Sbjct 195 APGVFTAAILVFIFAWNDFLFAMSLTSTTQARTVPAAIAFFAGTSRFELPTGSIAAASVV 254
Query 248 ITIPIIVFVLIFQRRIVAGLTSGAVKG 274
+T+PI+V VLIFQRRIVAGLT+GAVKG
Sbjct 255 VTLPIVVIVLIFQRRIVAGLTAGAVKG 281
>gi|288917511|ref|ZP_06411876.1| binding-protein-dependent transport systems inner membrane component
[Frankia sp. EUN1f]
gi|288351057|gb|EFC85269.1| binding-protein-dependent transport systems inner membrane component
[Frankia sp. EUN1f]
Length=280
Score = 337 bits (865), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 179/273 (66%), Positives = 220/273 (81%), Gaps = 0/273 (0%)
Query 2 GARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDL 61
G R W +T+VV +L+P+LW+ SLS K ++ DG+L+P+ T NYRGIF L
Sbjct 8 GNRALLGWVTANTVVVVLSLVPLLWLVSLSFKTPESIGDGRLVPTDPTLANYRGIFTQSL 67
Query 62 FSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPL 121
F+ AL+NS+GI LI+T++AV +G +AAYA+ARL FPG+R L+G ALLI MFP ISL++PL
Sbjct 68 FTRALVNSLGIALISTLLAVGIGGLAAYAIARLRFPGRRALVGLALLIAMFPQISLISPL 127
Query 122 FNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRK 181
FN+ R +G+FDTW GLI+PY+TF+LPLAIYTL+ FFREIP DLEKAA MDGATP Q F +
Sbjct 128 FNLWRQLGIFDTWIGLIVPYLTFSLPLAIYTLATFFREIPPDLEKAAAMDGATPAQTFVR 187
Query 182 VIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSI 241
VI PLAAPG VT AILVFIF WND L A+SLT+T+++ TAP AIA FTG+SQF +P GSI
Sbjct 188 VIAPLAAPGTVTTAILVFIFCWNDFLFAISLTSTESSRTAPAAIAFFTGASQFAQPIGSI 247
Query 242 AAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG 274
AA A+VITIPIIVFVL+FQRRIVAGLTSGAVKG
Sbjct 248 AAAAVVITIPIIVFVLLFQRRIVAGLTSGAVKG 280
Lambda K H
0.327 0.141 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 429277556614
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40