BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1237

Length=274
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|339294223|gb|AEJ46334.1|  sugar-transport integral membrane pr...   528    3e-148
gi|254231497|ref|ZP_04924824.1|  sugar-transport integral membran...   527    5e-148
gi|15608377|ref|NP_215753.1|  sugar-transport integral membrane p...   526    2e-147
gi|339297863|gb|AEJ49973.1|  sugar-transport integral membrane pr...   494    4e-138
gi|240173001|ref|ZP_04751659.1|  putative sugar-transport integra...   471    7e-131
gi|183984176|ref|YP_001852467.1|  sugar-transport integral membra...   463    1e-128
gi|342862116|ref|ZP_08718759.1|  SugB [Mycobacterium colombiense ...   461    4e-128
gi|15827533|ref|NP_301796.1|  ABC transporter inner membrane prot...   461    5e-128
gi|699148|gb|AAA62914.1|  malg [Mycobacterium leprae]                  461    5e-128
gi|333989848|ref|YP_004522462.1|  sugar-transport integral membra...   457    7e-127
gi|296170138|ref|ZP_06851736.1|  sugar ABC superfamily ATP bindin...   455    3e-126
gi|254823050|ref|ZP_05228051.1|  SugB [Mycobacterium intracellula...   455    4e-126
gi|336458568|gb|EGO37535.1|  ABC-type sugar transport system, per...   454    5e-126
gi|108800945|ref|YP_641142.1|  binding-protein-dependent transpor...   452    3e-125
gi|126436570|ref|YP_001072261.1|  binding-protein-dependent trans...   452    3e-125
gi|41408644|ref|NP_961480.1|  SugB [Mycobacterium avium subsp. pa...   448    4e-124
gi|254774254|ref|ZP_05215770.1|  SugB [Mycobacterium avium subsp....   448    4e-124
gi|118463177|ref|YP_880620.1|  ABC transporter permease [Mycobact...   442    4e-122
gi|169628465|ref|YP_001702114.1|  sugar ABC transporter permease ...   439    2e-121
gi|111022953|ref|YP_705925.1|  sugar ABC transporter permease [Rh...   427    1e-117
gi|118473813|ref|YP_889309.1|  ABC transporter permease [Mycobact...   423    1e-116
gi|226307632|ref|YP_002767592.1|  ABC transporter permease protei...   421    9e-116
gi|343928021|ref|ZP_08767486.1|  putative ABC transporter permeas...   419    2e-115
gi|229493741|ref|ZP_04387523.1|  ABC sugar transporter, permease ...   418    3e-115
gi|296138928|ref|YP_003646171.1|  binding-protein-dependent trans...   414    7e-114
gi|118619614|ref|YP_907946.1|  sugar-transport integral membrane ...   412    2e-113
gi|262201809|ref|YP_003273017.1|  binding-protein-dependent trans...   410    8e-113
gi|257054717|ref|YP_003132549.1|  carbohydrate ABC transporter me...   399    2e-109
gi|256374956|ref|YP_003098616.1|  ABC transporter inner membrane ...   399    3e-109
gi|330468990|ref|YP_004406733.1|  binding-protein-dependent trans...   394    6e-108
gi|326382047|ref|ZP_08203740.1|  multiple sugar transport system ...   391    5e-107
gi|331694916|ref|YP_004331155.1|  ABC transporter integral membra...   390    9e-107
gi|300783010|ref|YP_003763301.1|  sugar ABC transporter permease ...   388    4e-106
gi|238060004|ref|ZP_04604713.1|  ABC sugar transporter permease c...   387    9e-106
gi|134097643|ref|YP_001103304.1|  ABC sugar transporter, permease...   385    3e-105
gi|302524365|ref|ZP_07276707.1|  ABC sugar transporter [Streptomy...   383    2e-104
gi|302562113|ref|ZP_07314455.1|  sugar ABC transporter, permease ...   380    2e-103
gi|291435774|ref|ZP_06575164.1|  binding-protein-dependent transp...   378    7e-103
gi|312197859|ref|YP_004017920.1|  binding-protein-dependent trans...   377    9e-103
gi|213966430|ref|ZP_03394607.1|  ABC sugar transporter, permease ...   374    6e-102
gi|158316384|ref|YP_001508892.1|  binding-protein-dependent trans...   372    3e-101
gi|291298568|ref|YP_003509846.1|  binding-protein-dependent trans...   372    5e-101
gi|302868629|ref|YP_003837266.1|  binding-protein-dependent trans...   364    9e-99 
gi|111223173|ref|YP_713967.1|  sugar ABC transporter membrane pro...   350    1e-94 
gi|77163815|ref|YP_342340.1|  ABC transporter, inner membrane sub...   349    2e-94 
gi|254436228|ref|ZP_05049735.1|  ABC transporter, permease protei...   349    2e-94 
gi|292491691|ref|YP_003527130.1|  binding-protein-dependent trans...   348    4e-94 
gi|291302104|ref|YP_003513382.1|  binding-protein-dependent trans...   343    1e-92 
gi|300113097|ref|YP_003759672.1|  binding-protein-dependent trans...   342    3e-92 
gi|288917511|ref|ZP_06411876.1|  binding-protein-dependent transp...   337    8e-91 


>gi|339294223|gb|AEJ46334.1| sugar-transport integral membrane protein ABC transporter sugB 
[Mycobacterium tuberculosis CCDC5079]
Length=282

 Score =  528 bits (1361),  Expect = 3e-148, Method: Compositional matrix adjust.
 Identities = 274/274 (100%), Positives = 274/274 (100%), Gaps = 0/274 (0%)

Query  1    VGARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGD  60
            VGARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGD
Sbjct  9    VGARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGD  68

Query  61   LFSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTP  120
            LFSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTP
Sbjct  69   LFSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTP  128

Query  121  LFNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFR  180
            LFNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFR
Sbjct  129  LFNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFR  188

Query  181  KVIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGS  240
            KVIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGS
Sbjct  189  KVIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGS  248

Query  241  IAAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG  274
            IAAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG
Sbjct  249  IAAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG  282


>gi|254231497|ref|ZP_04924824.1| sugar-transport integral membrane protein ABC transporter sugB 
[Mycobacterium tuberculosis C]
 gi|298524737|ref|ZP_07012146.1| ABC transporter, permease protein SugB [Mycobacterium tuberculosis 
94_M4241A]
 gi|308231791|ref|ZP_07663934.1| sugar-transport membrane protein ABC transporter sugB [Mycobacterium 
tuberculosis SUMu001]
 23 more sequence titles
 Length=279

 Score =  527 bits (1358),  Expect = 5e-148, Method: Compositional matrix adjust.
 Identities = 274/274 (100%), Positives = 274/274 (100%), Gaps = 0/274 (0%)

Query  1    VGARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGD  60
            VGARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGD
Sbjct  6    VGARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGD  65

Query  61   LFSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTP  120
            LFSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTP
Sbjct  66   LFSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTP  125

Query  121  LFNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFR  180
            LFNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFR
Sbjct  126  LFNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFR  185

Query  181  KVIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGS  240
            KVIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGS
Sbjct  186  KVIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGS  245

Query  241  IAAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG  274
            IAAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG
Sbjct  246  IAAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG  279


>gi|15608377|ref|NP_215753.1| sugar-transport integral membrane protein ABC transporter SugB 
[Mycobacterium tuberculosis H37Rv]
 gi|15840682|ref|NP_335719.1| sugar ABC transporter, permease protein [Mycobacterium tuberculosis 
CDC1551]
 gi|31792430|ref|NP_854923.1| sugar-transport integral membrane protein ABC transporter SugB 
[Mycobacterium bovis AF2122/97]
 52 more sequence titles
 Length=274

 Score =  526 bits (1355),  Expect = 2e-147, Method: Compositional matrix adjust.
 Identities = 273/274 (99%), Positives = 274/274 (100%), Gaps = 0/274 (0%)

Query  1    VGARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGD  60
            +GARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGD
Sbjct  1    MGARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGD  60

Query  61   LFSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTP  120
            LFSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTP
Sbjct  61   LFSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTP  120

Query  121  LFNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFR  180
            LFNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFR
Sbjct  121  LFNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFR  180

Query  181  KVIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGS  240
            KVIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGS
Sbjct  181  KVIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGS  240

Query  241  IAAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG  274
            IAAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG
Sbjct  241  IAAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG  274


>gi|339297863|gb|AEJ49973.1| sugar-transport integral membrane protein ABC transporter sugB 
[Mycobacterium tuberculosis CCDC5180]
Length=258

 Score =  494 bits (1273),  Expect = 4e-138, Method: Compositional matrix adjust.
 Identities = 257/258 (99%), Positives = 258/258 (100%), Gaps = 0/258 (0%)

Query  17   VGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFSSALINSIGIGLIT  76
            +GYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFSSALINSIGIGLIT
Sbjct  1    MGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFSSALINSIGIGLIT  60

Query  77   TVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFNIERAIGLFDTWPG  136
            TVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFNIERAIGLFDTWPG
Sbjct  61   TVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFNIERAIGLFDTWPG  120

Query  137  LILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVIVPLAAPGLVTAAI  196
            LILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVIVPLAAPGLVTAAI
Sbjct  121  LILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVIVPLAAPGLVTAAI  180

Query  197  LVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAAGAIVITIPIIVFV  256
            LVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAAGAIVITIPIIVFV
Sbjct  181  LVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAAGAIVITIPIIVFV  240

Query  257  LIFQRRIVAGLTSGAVKG  274
            LIFQRRIVAGLTSGAVKG
Sbjct  241  LIFQRRIVAGLTSGAVKG  258


>gi|240173001|ref|ZP_04751659.1| putative sugar-transport integral membrane protein ABC transporter 
[Mycobacterium kansasii ATCC 12478]
Length=274

 Score =  471 bits (1211),  Expect = 7e-131, Method: Compositional matrix adjust.
 Identities = 247/274 (91%), Positives = 263/274 (96%), Gaps = 0/274 (0%)

Query  1    VGARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGD  60
            + ARR   WA++D LVV YALLPVLWIFSLSLKPTSTVKDGKLIP++VT DNYRG+FRG+
Sbjct  1    MSARRTMAWAIIDVLVVVYALLPVLWIFSLSLKPTSTVKDGKLIPASVTLDNYRGVFRGE  60

Query  61   LFSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTP  120
             FSSALINSIG+GLITTVIAV+LGAMAAYAVARL FPGKR+LIGA LLITMFP+ISLVTP
Sbjct  61   FFSSALINSIGVGLITTVIAVLLGAMAAYAVARLAFPGKRVLIGATLLITMFPAISLVTP  120

Query  121  LFNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFR  180
            LFNIERA+GLFDTWPGLILPYITFALPLAIYTLSAFFRE+PWDLEKAAKMDGATPGQAFR
Sbjct  121  LFNIERAVGLFDTWPGLILPYITFALPLAIYTLSAFFREVPWDLEKAAKMDGATPGQAFR  180

Query  181  KVIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGS  240
            KVI PLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGS
Sbjct  181  KVIAPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGS  240

Query  241  IAAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG  274
            IAAGA+VIT+PIIVFVL+FQRRIVAGLTSGAVKG
Sbjct  241  IAAGAMVITVPIIVFVLVFQRRIVAGLTSGAVKG  274


>gi|183984176|ref|YP_001852467.1| sugar-transport integral membrane protein ABC transporter SugB 
[Mycobacterium marinum M]
 gi|183177502|gb|ACC42612.1| sugar-transport integral membrane protein ABC transporter SugB 
[Mycobacterium marinum M]
Length=276

 Score =  463 bits (1192),  Expect = 1e-128, Method: Compositional matrix adjust.
 Identities = 246/273 (91%), Positives = 261/273 (96%), Gaps = 0/273 (0%)

Query  2    GARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDL  61
            G+ R T+W V+DT+VV YALLPVLWI SLSLKPTSTVKDG+LIPS+VT DNYRG+F GDL
Sbjct  4    GSGRRTFWVVIDTMVVVYALLPVLWILSLSLKPTSTVKDGRLIPSSVTLDNYRGVFGGDL  63

Query  62   FSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPL  121
            FSSALINSIGIGL TTVIAV+LGAMAAYAVARL+FPGKRLL+G ALLITMFP+ISLVTPL
Sbjct  64   FSSALINSIGIGLTTTVIAVLLGAMAAYAVARLDFPGKRLLVGVALLITMFPAISLVTPL  123

Query  122  FNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRK  181
            FNIER IGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAA+MDGATP QAFRK
Sbjct  124  FNIERRIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAQMDGATPYQAFRK  183

Query  182  VIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSI  241
            VIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKA+ITAPVAIANF GSSQFEEPTGSI
Sbjct  184  VIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKASITAPVAIANFAGSSQFEEPTGSI  243

Query  242  AAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG  274
            AAGA+VIT+PIIVFVLIFQRRIVAGLTSGAVKG
Sbjct  244  AAGAMVITVPIIVFVLIFQRRIVAGLTSGAVKG  276


>gi|342862116|ref|ZP_08718759.1| SugB [Mycobacterium colombiense CECT 3035]
 gi|342130420|gb|EGT83735.1| SugB [Mycobacterium colombiense CECT 3035]
Length=286

 Score =  461 bits (1187),  Expect = 4e-128, Method: Compositional matrix adjust.
 Identities = 243/273 (90%), Positives = 262/273 (96%), Gaps = 0/273 (0%)

Query  2    GARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDL  61
            GARR   WAV+DTLVV YALLPVLWIFSLSLKP+ST+KDGKLIPS+++ DNYRGIFRGD+
Sbjct  14   GARRTATWAVIDTLVVVYALLPVLWIFSLSLKPSSTIKDGKLIPSSISLDNYRGIFRGDV  73

Query  62   FSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPL  121
            FSSALINS+G+GLITTVIAV LGAMAAYAVARL+FPGKRLL+G  LLITMFP+ISLVTPL
Sbjct  74   FSSALINSVGVGLITTVIAVTLGAMAAYAVARLDFPGKRLLVGVTLLITMFPAISLVTPL  133

Query  122  FNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRK  181
            FNIER +GLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATP QAFRK
Sbjct  134  FNIERFVGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPAQAFRK  193

Query  182  VIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSI  241
            VIVPLAAPG+VTAAILVFIFAWNDLLLAL+LTATKAAITAPVAI NF+GSSQFEEPTGSI
Sbjct  194  VIVPLAAPGVVTAAILVFIFAWNDLLLALTLTATKAAITAPVAIVNFSGSSQFEEPTGSI  253

Query  242  AAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG  274
            AAGA+VIT+PII+FVLIFQRRIVAGLTSGAVKG
Sbjct  254  AAGAVVITVPIIIFVLIFQRRIVAGLTSGAVKG  286


>gi|15827533|ref|NP_301796.1| ABC transporter inner membrane protein [Mycobacterium leprae 
TN]
 gi|221230010|ref|YP_002503426.1| putative ABC-transport protein, inner membrane component [Mycobacterium 
leprae Br4923]
 gi|13093083|emb|CAC31469.1| probable ABC-transport protein, inner membrane component [Mycobacterium 
leprae]
 gi|219933117|emb|CAR71183.1| probable ABC-transport protein, inner membrane component [Mycobacterium 
leprae Br4923]
Length=287

 Score =  461 bits (1187),  Expect = 5e-128, Method: Compositional matrix adjust.
 Identities = 246/274 (90%), Positives = 255/274 (94%), Gaps = 0/274 (0%)

Query  1    VGARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGD  60
            VGARRAT W ++DT VVGYALLPVLWI SLSLKP STVKDGKLIPS VTFDNYRGIFR D
Sbjct  14   VGARRATIWVIIDTFVVGYALLPVLWILSLSLKPASTVKDGKLIPSLVTFDNYRGIFRSD  73

Query  61   LFSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTP  120
            LFSSALINSIGIGL TTVIAV+ GAMAAYA+ARL FPGKRLL+G  LL+TMFP+ISLVTP
Sbjct  74   LFSSALINSIGIGLTTTVIAVMFGAMAAYAIARLAFPGKRLLVGTTLLVTMFPAISLVTP  133

Query  121  LFNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFR  180
            LFNIER +GLFDTW GLILPYITFALPLAIYTLSAFF EIPWDLEKAAKMDGAT GQAFR
Sbjct  134  LFNIERRVGLFDTWAGLILPYITFALPLAIYTLSAFFAEIPWDLEKAAKMDGATSGQAFR  193

Query  181  KVIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGS  240
            KVIVPLAAPGLVTAAILVFIFAWNDLLLALSLT+TKAAITAPVAI NFTGSSQFEEPTGS
Sbjct  194  KVIVPLAAPGLVTAAILVFIFAWNDLLLALSLTSTKAAITAPVAITNFTGSSQFEEPTGS  253

Query  241  IAAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG  274
            IAAGAIVIT PIIVFV IFQRRIVAGLTSGAVKG
Sbjct  254  IAAGAIVITAPIIVFVWIFQRRIVAGLTSGAVKG  287


>gi|699148|gb|AAA62914.1| malg [Mycobacterium leprae]
Length=296

 Score =  461 bits (1186),  Expect = 5e-128, Method: Compositional matrix adjust.
 Identities = 246/274 (90%), Positives = 255/274 (94%), Gaps = 0/274 (0%)

Query  1    VGARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGD  60
            VGARRAT W ++DT VVGYALLPVLWI SLSLKP STVKDGKLIPS VTFDNYRGIFR D
Sbjct  23   VGARRATIWVIIDTFVVGYALLPVLWILSLSLKPASTVKDGKLIPSLVTFDNYRGIFRSD  82

Query  61   LFSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTP  120
            LFSSALINSIGIGL TTVIAV+ GAMAAYA+ARL FPGKRLL+G  LL+TMFP+ISLVTP
Sbjct  83   LFSSALINSIGIGLTTTVIAVMFGAMAAYAIARLAFPGKRLLVGTTLLVTMFPAISLVTP  142

Query  121  LFNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFR  180
            LFNIER +GLFDTW GLILPYITFALPLAIYTLSAFF EIPWDLEKAAKMDGAT GQAFR
Sbjct  143  LFNIERRVGLFDTWAGLILPYITFALPLAIYTLSAFFAEIPWDLEKAAKMDGATSGQAFR  202

Query  181  KVIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGS  240
            KVIVPLAAPGLVTAAILVFIFAWNDLLLALSLT+TKAAITAPVAI NFTGSSQFEEPTGS
Sbjct  203  KVIVPLAAPGLVTAAILVFIFAWNDLLLALSLTSTKAAITAPVAITNFTGSSQFEEPTGS  262

Query  241  IAAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG  274
            IAAGAIVIT PIIVFV IFQRRIVAGLTSGAVKG
Sbjct  263  IAAGAIVITAPIIVFVWIFQRRIVAGLTSGAVKG  296


>gi|333989848|ref|YP_004522462.1| sugar-transport integral membrane protein ABC transporter SugB 
[Mycobacterium sp. JDM601]
 gi|333485816|gb|AEF35208.1| sugar-transport integral membrane protein ABC transporter SugB 
[Mycobacterium sp. JDM601]
Length=275

 Score =  457 bits (1176),  Expect = 7e-127, Method: Compositional matrix adjust.
 Identities = 242/271 (90%), Positives = 257/271 (95%), Gaps = 0/271 (0%)

Query  4    RRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFS  63
            RR   W ++D  VV YAL+PVLWIFSLSLKPTSTVKDGKLIPS+VT DNYRGIF GD+F 
Sbjct  5    RRRAAWLIIDLAVVVYALVPVLWIFSLSLKPTSTVKDGKLIPSSVTLDNYRGIFAGDVFG  64

Query  64   SALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFN  123
            SALINS+GIGLITTVIAVV+GAMAAYAVARL+FPGKRLL+GAALLI MFP ISLVTP+FN
Sbjct  65   SALINSVGIGLITTVIAVVIGAMAAYAVARLDFPGKRLLVGAALLIAMFPQISLVTPIFN  124

Query  124  IERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVI  183
            IERAIGLFDTWPGLI+PYITFALPLAIYTLSAFF EIPWDLEKAAKMDGATPGQAFRKVI
Sbjct  125  IERAIGLFDTWPGLIIPYITFALPLAIYTLSAFFSEIPWDLEKAAKMDGATPGQAFRKVI  184

Query  184  VPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAA  243
             PLAAPG+VTAAILVFIFAWNDLLLALSLTATKA+ITAPVAIANFTGSSQFEEPTGSIAA
Sbjct  185  APLAAPGIVTAAILVFIFAWNDLLLALSLTATKASITAPVAIANFTGSSQFEEPTGSIAA  244

Query  244  GAIVITIPIIVFVLIFQRRIVAGLTSGAVKG  274
            GA+VIT+PIIVFVLIFQRRIVAGLTSGAVKG
Sbjct  245  GAMVITVPIIVFVLIFQRRIVAGLTSGAVKG  275


>gi|296170138|ref|ZP_06851736.1| sugar ABC superfamily ATP binding cassette transporter, membrane 
protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295895200|gb|EFG74914.1| sugar ABC superfamily ATP binding cassette transporter, membrane 
protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=283

 Score =  455 bits (1171),  Expect = 3e-126, Method: Compositional matrix adjust.
 Identities = 240/266 (91%), Positives = 256/266 (97%), Gaps = 0/266 (0%)

Query  9    WAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFSSALIN  68
            WAV+D +VV YALLPVLWI SLSLKPTSTVKDGKLIPS+V+F+NYRGIFRGDLFSSALIN
Sbjct  18   WAVIDAVVVVYALLPVLWILSLSLKPTSTVKDGKLIPSSVSFENYRGIFRGDLFSSALIN  77

Query  69   SIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFNIERAI  128
            SIGIGL  T IAVVLGAMAAYA+ARL+FPGKR+LIGA LL+TMFP+ISLVTPLFNIER +
Sbjct  78   SIGIGLTATAIAVVLGAMAAYAIARLDFPGKRVLIGATLLVTMFPAISLVTPLFNIERFV  137

Query  129  GLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVIVPLAA  188
            GLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATP QAFRKVIVPLAA
Sbjct  138  GLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPAQAFRKVIVPLAA  197

Query  189  PGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAAGAIVI  248
            PG+VTAAILVFIFAWNDLLLALSLTATK+AITAPVAIANF GSSQFEEPTGSIAAGA+VI
Sbjct  198  PGVVTAAILVFIFAWNDLLLALSLTATKSAITAPVAIANFGGSSQFEEPTGSIAAGAVVI  257

Query  249  TIPIIVFVLIFQRRIVAGLTSGAVKG  274
            T+PIIVFVLIFQRRI+AGLTSGAVKG
Sbjct  258  TVPIIVFVLIFQRRIIAGLTSGAVKG  283


>gi|254823050|ref|ZP_05228051.1| SugB [Mycobacterium intracellulare ATCC 13950]
Length=282

 Score =  455 bits (1170),  Expect = 4e-126, Method: Compositional matrix adjust.
 Identities = 241/272 (89%), Positives = 257/272 (95%), Gaps = 0/272 (0%)

Query  3    ARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLF  62
            ARR   WAV+DT+VV YALLPVLWIFSLSLKPTSTVKDGKLIPS+V+ DNYRGIFRGD+F
Sbjct  11   ARRTAIWAVIDTVVVVYALLPVLWIFSLSLKPTSTVKDGKLIPSSVSLDNYRGIFRGDIF  70

Query  63   SSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLF  122
            SSALINS+GIGLITT IAV LGAMA YA+ARL FPGKR L+GA LLITMFP+ISLVTPLF
Sbjct  71   SSALINSVGIGLITTAIAVTLGAMAGYAIARLNFPGKRALVGATLLITMFPAISLVTPLF  130

Query  123  NIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKV  182
            NIER +GLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGA+P QAFRKV
Sbjct  131  NIERFVGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGASPAQAFRKV  190

Query  183  IVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIA  242
            IVPLAAPG+VTAAILVFIFAWNDLLLAL+LTATKAAITAPVAI NF+GSSQFEEPTGSIA
Sbjct  191  IVPLAAPGVVTAAILVFIFAWNDLLLALTLTATKAAITAPVAIVNFSGSSQFEEPTGSIA  250

Query  243  AGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG  274
            AGA+VIT+PII FVLIFQRRIVAGLTSGAVKG
Sbjct  251  AGAVVITVPIIAFVLIFQRRIVAGLTSGAVKG  282


>gi|336458568|gb|EGO37535.1| ABC-type sugar transport system, permease component [Mycobacterium 
avium subsp. paratuberculosis S397]
Length=279

 Score =  454 bits (1169),  Expect = 5e-126, Method: Compositional matrix adjust.
 Identities = 242/272 (89%), Positives = 260/272 (96%), Gaps = 0/272 (0%)

Query  3    ARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLF  62
            ARR   WAV+DTLVV YALLPVLWIFSLSLKPTSTVKDGKLIPS ++ +NYRGIFRGD F
Sbjct  8    ARRTVLWAVIDTLVVVYALLPVLWIFSLSLKPTSTVKDGKLIPSAISLENYRGIFRGDFF  67

Query  63   SSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLF  122
            SSALINS+GIGLITT +AV+LGAMAAYAVARL+FPGKRLLIGA LLITMFP+ISLVTPLF
Sbjct  68   SSALINSVGIGLITTAVAVLLGAMAAYAVARLDFPGKRLLIGATLLITMFPAISLVTPLF  127

Query  123  NIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKV  182
            NIER +GLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAK+DGATP QAFRKV
Sbjct  128  NIERFLGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKIDGATPAQAFRKV  187

Query  183  IVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIA  242
            IVPLAAPG+VTAAILVFIFAWNDLLLAL+LTATKAAITAPVAI +F+GSSQFEEPTGSIA
Sbjct  188  IVPLAAPGVVTAAILVFIFAWNDLLLALTLTATKAAITAPVAIVSFSGSSQFEEPTGSIA  247

Query  243  AGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG  274
            AGA+VIT+PII+FVLIFQRRIVAGLTSGAVKG
Sbjct  248  AGAVVITVPIILFVLIFQRRIVAGLTSGAVKG  279


>gi|108800945|ref|YP_641142.1| binding-protein-dependent transport systems inner membrane component 
[Mycobacterium sp. MCS]
 gi|119870085|ref|YP_940037.1| binding-protein-dependent transport systems inner membrane component 
[Mycobacterium sp. KMS]
 gi|108771364|gb|ABG10086.1| carbohydrate ABC transporter membrane protein 2, CUT1 family 
[Mycobacterium sp. MCS]
 gi|119696174|gb|ABL93247.1| carbohydrate ABC transporter membrane protein 2, CUT1 family 
[Mycobacterium sp. KMS]
Length=278

 Score =  452 bits (1162),  Expect = 3e-125, Method: Compositional matrix adjust.
 Identities = 241/274 (88%), Positives = 258/274 (95%), Gaps = 0/274 (0%)

Query  1    VGARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGD  60
            V A RA+ WAV++ LVV YALLPVLWI SLSLKPTS+VKDGKLIP+ +TFDNY+GIF+G+
Sbjct  5    VTAGRASGWAVVNILVVIYALLPVLWILSLSLKPTSSVKDGKLIPTEITFDNYKGIFQGN  64

Query  61   LFSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTP  120
             F+SALINSIGIGLITTVIAVV+G MAAYAVARL FPGKRLL+G ALLI MFP ISLVTP
Sbjct  65   AFTSALINSIGIGLITTVIAVVVGGMAAYAVARLTFPGKRLLVGVALLIAMFPQISLVTP  124

Query  121  LFNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFR  180
            LFNIER+IGLFDTWPGLI+PYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATP QAFR
Sbjct  125  LFNIERSIGLFDTWPGLIIPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPAQAFR  184

Query  181  KVIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGS  240
            KVI PLAAPG+VTAAILVFIFAWNDLLLALSLTAT+ AITAPVAIANFTGSSQFEEPTGS
Sbjct  185  KVIAPLAAPGIVTAAILVFIFAWNDLLLALSLTATQRAITAPVAIANFTGSSQFEEPTGS  244

Query  241  IAAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG  274
            IAAGA+VITIPIIVFVLIFQRRIVAGLTSGAVKG
Sbjct  245  IAAGAMVITIPIIVFVLIFQRRIVAGLTSGAVKG  278


>gi|126436570|ref|YP_001072261.1| binding-protein-dependent transport systems inner membrane component 
[Mycobacterium sp. JLS]
 gi|126236370|gb|ABN99770.1| carbohydrate ABC transporter membrane protein 2, CUT1 family 
[Mycobacterium sp. JLS]
Length=278

 Score =  452 bits (1162),  Expect = 3e-125, Method: Compositional matrix adjust.
 Identities = 241/274 (88%), Positives = 258/274 (95%), Gaps = 0/274 (0%)

Query  1    VGARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGD  60
            V A RA+ WAV++ LVV YALLPVLWI SLSLKPTS+VKDGKLIP+ +TFDNY+GIF+G+
Sbjct  5    VTAGRASGWAVVNILVVIYALLPVLWILSLSLKPTSSVKDGKLIPTEITFDNYKGIFQGN  64

Query  61   LFSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTP  120
             F+SALINSIGIGLITTVIAVV+G MAAYAVARL FPGKRLL+G ALLI MFP ISLVTP
Sbjct  65   AFTSALINSIGIGLITTVIAVVIGGMAAYAVARLTFPGKRLLVGVALLIAMFPQISLVTP  124

Query  121  LFNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFR  180
            LFNIER+IGLFDTWPGLI+PYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATP QAFR
Sbjct  125  LFNIERSIGLFDTWPGLIIPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPAQAFR  184

Query  181  KVIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGS  240
            KVI PLAAPG+VTAAILVFIFAWNDLLLALSLTAT+ AITAPVAIANFTGSSQFEEPTGS
Sbjct  185  KVIAPLAAPGIVTAAILVFIFAWNDLLLALSLTATQRAITAPVAIANFTGSSQFEEPTGS  244

Query  241  IAAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG  274
            IAAGA+VITIPIIVFVLIFQRRIVAGLTSGAVKG
Sbjct  245  IAAGAMVITIPIIVFVLIFQRRIVAGLTSGAVKG  278


>gi|41408644|ref|NP_961480.1| SugB [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41397002|gb|AAS04863.1| SugB [Mycobacterium avium subsp. paratuberculosis K-10]
Length=268

 Score =  448 bits (1153),  Expect = 4e-124, Method: Compositional matrix adjust.
 Identities = 239/266 (90%), Positives = 257/266 (97%), Gaps = 0/266 (0%)

Query  9    WAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFSSALIN  68
            WAV+DTLVV YALLPVLWIFSLSLKPTSTVKDGKLIPS ++ +NYRGIFRGD FSSALIN
Sbjct  3    WAVIDTLVVVYALLPVLWIFSLSLKPTSTVKDGKLIPSAISLENYRGIFRGDFFSSALIN  62

Query  69   SIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFNIERAI  128
            S+GIGLITT +AV+LGAMAAYAVARL+FPGKRLLIGA LLITMFP+ISLVTPLFNIER +
Sbjct  63   SVGIGLITTAVAVLLGAMAAYAVARLDFPGKRLLIGATLLITMFPAISLVTPLFNIERFL  122

Query  129  GLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVIVPLAA  188
            GLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAK+DGATP QAFRKVIVPLAA
Sbjct  123  GLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKIDGATPAQAFRKVIVPLAA  182

Query  189  PGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAAGAIVI  248
            PG+VTAAILVFIFAWNDLLLAL+LTATKAAITAPVAI +F+GSSQFEEPTGSIAAGA+VI
Sbjct  183  PGVVTAAILVFIFAWNDLLLALTLTATKAAITAPVAIVSFSGSSQFEEPTGSIAAGAVVI  242

Query  249  TIPIIVFVLIFQRRIVAGLTSGAVKG  274
            T+PII+FVLIFQRRIVAGLTSGAVKG
Sbjct  243  TVPIILFVLIFQRRIVAGLTSGAVKG  268


>gi|254774254|ref|ZP_05215770.1| SugB [Mycobacterium avium subsp. avium ATCC 25291]
Length=268

 Score =  448 bits (1152),  Expect = 4e-124, Method: Compositional matrix adjust.
 Identities = 238/266 (90%), Positives = 257/266 (97%), Gaps = 0/266 (0%)

Query  9    WAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFSSALIN  68
            WAV+DTLVV YALLPVLWIFSLSLKPTSTVKDGKLIPS ++ +NYRGIFRGD FSSALIN
Sbjct  3    WAVIDTLVVVYALLPVLWIFSLSLKPTSTVKDGKLIPSAISLENYRGIFRGDFFSSALIN  62

Query  69   SIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFNIERAI  128
            S+GIGLITT +AV+LGAMAAYAVARL+FPGKRLLIGA LLITMFP+ISLVTPLFNIER +
Sbjct  63   SVGIGLITTAVAVLLGAMAAYAVARLDFPGKRLLIGATLLITMFPAISLVTPLFNIERFL  122

Query  129  GLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVIVPLAA  188
            GLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAK+DGATP QAFRKVIVPLAA
Sbjct  123  GLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKIDGATPAQAFRKVIVPLAA  182

Query  189  PGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAAGAIVI  248
            PG+VTAAILVFIFAWNDLLLAL+LTATKAAITAPVAI +F+GSSQFEEPTGSIAAGA+VI
Sbjct  183  PGVVTAAILVFIFAWNDLLLALTLTATKAAITAPVAIVSFSGSSQFEEPTGSIAAGAVVI  242

Query  249  TIPIIVFVLIFQRRIVAGLTSGAVKG  274
            T+P+I+FVLIFQRRIVAGLTSGAVKG
Sbjct  243  TVPVILFVLIFQRRIVAGLTSGAVKG  268


>gi|118463177|ref|YP_880620.1| ABC transporter permease [Mycobacterium avium 104]
 gi|118164464|gb|ABK65361.1| ABC transporter, permease protein SugB [Mycobacterium avium 104]
Length=264

 Score =  442 bits (1136),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 235/264 (90%), Positives = 255/264 (97%), Gaps = 0/264 (0%)

Query  11   VLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFSSALINSI  70
            ++DTLVV YALLPVLWIFSLSLKPTSTVKDGKLIPS ++ +NYRGIFRGD FSSALINS+
Sbjct  1    MIDTLVVVYALLPVLWIFSLSLKPTSTVKDGKLIPSAISLENYRGIFRGDFFSSALINSV  60

Query  71   GIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFNIERAIGL  130
            GIGLITT +AV+LGAMAAYAVARL+FPGKRLLIGA LLITMFP+ISLVTPLFNIER +GL
Sbjct  61   GIGLITTAVAVLLGAMAAYAVARLDFPGKRLLIGATLLITMFPAISLVTPLFNIERFLGL  120

Query  131  FDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVIVPLAAPG  190
            FDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAK+DGATP QAFRKVIVPLAAPG
Sbjct  121  FDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKIDGATPAQAFRKVIVPLAAPG  180

Query  191  LVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAAGAIVITI  250
            +VTAAILVFIFAWNDLLLAL+LTATKAAITAPVAI +F+GSSQFEEPTGSIAAGA+VIT+
Sbjct  181  VVTAAILVFIFAWNDLLLALTLTATKAAITAPVAIVSFSGSSQFEEPTGSIAAGAVVITV  240

Query  251  PIIVFVLIFQRRIVAGLTSGAVKG  274
            P+I+FVLIFQRRIVAGLTSGAVKG
Sbjct  241  PVILFVLIFQRRIVAGLTSGAVKG  264


>gi|169628465|ref|YP_001702114.1| sugar ABC transporter permease SugB [Mycobacterium abscessus 
ATCC 19977]
 gi|169240432|emb|CAM61460.1| Probable sugar ABC transporter, permease protein SugB [Mycobacterium 
abscessus]
Length=277

 Score =  439 bits (1129),  Expect = 2e-121, Method: Compositional matrix adjust.
 Identities = 220/272 (81%), Positives = 245/272 (91%), Gaps = 0/272 (0%)

Query  3    ARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLF  62
            + R   W + D LV+ YAL+PVLW+ SLSLKPTS+VKDGK  P  +T DNYRGIF G++F
Sbjct  6    SSRTAGWLIADVLVLCYALVPVLWVLSLSLKPTSSVKDGKFFPWPITLDNYRGIFSGNVF  65

Query  63   SSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLF  122
            +SAL+NSIGIGLI TVIAV +G MAAYAVARL+FPGK+ LIGAALLI MFP ISLVTP+F
Sbjct  66   TSALVNSIGIGLIATVIAVSVGTMAAYAVARLDFPGKKALIGAALLIAMFPQISLVTPIF  125

Query  123  NIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKV  182
            NIER++GLFDTWPGLI+PYITFALPLAIYTLSAFFREIPW+LEKAAKMDGATP QAF KV
Sbjct  126  NIERSVGLFDTWPGLIIPYITFALPLAIYTLSAFFREIPWELEKAAKMDGATPAQAFWKV  185

Query  183  IVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIA  242
            I PLA PG+VT+AILVFIFAWNDLLLA+SLTAT  +ITAPVAIANFTGSSQFEEPTGSIA
Sbjct  186  IAPLATPGIVTSAILVFIFAWNDLLLAISLTATDRSITAPVAIANFTGSSQFEEPTGSIA  245

Query  243  AGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG  274
            AGAIVIT+PII+FVLIFQRRIVAGLTSGAVKG
Sbjct  246  AGAIVITVPIIIFVLIFQRRIVAGLTSGAVKG  277


>gi|111022953|ref|YP_705925.1| sugar ABC transporter permease [Rhodococcus jostii RHA1]
 gi|226365459|ref|YP_002783242.1| ABC transporter permease protein [Rhodococcus opacus B4]
 gi|110822483|gb|ABG97767.1| ABC sugar transporter, permease component [Rhodococcus jostii 
RHA1]
 gi|226243949|dbj|BAH54297.1| putative ABC transporter permease protein [Rhodococcus opacus 
B4]
Length=278

 Score =  427 bits (1097),  Expect = 1e-117, Method: Compositional matrix adjust.
 Identities = 212/271 (79%), Positives = 241/271 (89%), Gaps = 0/271 (0%)

Query  4    RRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFS  63
            RR   W+V++ LV+ YAL+PVLWI SLS KP  T+KDGK IP   T DNYRGIF+ + F+
Sbjct  8    RRKISWSVVNLLVLLYALVPVLWIASLSFKPAGTIKDGKFIPQKWTLDNYRGIFQTNAFT  67

Query  64   SALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFN  123
            SALINSIGIGLI+TVIAVV+G MAAYA+ARL+FPGK+LL+G ALLI MFP ISLV+PLF+
Sbjct  68   SALINSIGIGLISTVIAVVIGTMAAYAIARLDFPGKKLLVGVALLIAMFPQISLVSPLFD  127

Query  124  IERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVI  183
            IER +GLFDTW GLILPYITFALPLAIYTLSAFF+EIPW+LEKAAKMDGATP QAFRKV+
Sbjct  128  IERRLGLFDTWAGLILPYITFALPLAIYTLSAFFKEIPWELEKAAKMDGATPAQAFRKVV  187

Query  184  VPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAA  243
             PLAAPG+VTAAILVFIF WNDLL A+SLT+T+ +ITAP AIANFTG+SQFEEPTGSIAA
Sbjct  188  APLAAPGIVTAAILVFIFCWNDLLFAISLTSTERSITAPAAIANFTGASQFEEPTGSIAA  247

Query  244  GAIVITIPIIVFVLIFQRRIVAGLTSGAVKG  274
             A+VITIPII+FVL FQRRIVAGLTSGAVKG
Sbjct  248  AAMVITIPIIIFVLFFQRRIVAGLTSGAVKG  278


>gi|118473813|ref|YP_889309.1| ABC transporter permease [Mycobacterium smegmatis str. MC2 155]
 gi|118175100|gb|ABK75996.1| ABC transporter, permease protein SugB [Mycobacterium smegmatis 
str. MC2 155]
Length=278

 Score =  423 bits (1088),  Expect = 1e-116, Method: Compositional matrix adjust.
 Identities = 233/274 (86%), Positives = 255/274 (94%), Gaps = 0/274 (0%)

Query  1    VGARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGD  60
            V ARRAT+W+V++ LV+ YAL+PVLWI SLSLKPTS+VKDGKLIP+ +TF NY+ IF GD
Sbjct  5    VDARRATWWSVVNILVIVYALIPVLWILSLSLKPTSSVKDGKLIPTEITFANYKAIFSGD  64

Query  61   LFSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTP  120
             F+SAL NSIGIGLITT+IAVV+G MAAYAVARL+FPGK+LLIG ALLI MFP ISLVTP
Sbjct  65   AFTSALFNSIGIGLITTIIAVVIGGMAAYAVARLQFPGKQLLIGVALLIAMFPHISLVTP  124

Query  121  LFNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFR  180
            +FN+ R IGLFDTWPGLI+PYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATP QAFR
Sbjct  125  IFNMWRGIGLFDTWPGLIIPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPAQAFR  184

Query  181  KVIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGS  240
            KVI PLAAPG+VTAAILVFIFAWNDLLLALSLTAT+ AITAPVAIANFTGSSQFEEPTGS
Sbjct  185  KVIAPLAAPGIVTAAILVFIFAWNDLLLALSLTATQRAITAPVAIANFTGSSQFEEPTGS  244

Query  241  IAAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG  274
            IAAGA+VITIPII+FVLIFQRRIVAGLTSGAVKG
Sbjct  245  IAAGAMVITIPIIIFVLIFQRRIVAGLTSGAVKG  278


>gi|226307632|ref|YP_002767592.1| ABC transporter permease protein [Rhodococcus erythropolis PR4]
 gi|226186749|dbj|BAH34853.1| putative ABC transporter permease protein [Rhodococcus erythropolis 
PR4]
Length=276

 Score =  421 bits (1081),  Expect = 9e-116, Method: Compositional matrix adjust.
 Identities = 211/274 (78%), Positives = 239/274 (88%), Gaps = 0/274 (0%)

Query  1    VGARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGD  60
            V  R    W+V++ LV+ YAL+PVLWI SLS KP  T+KDGK IP   T DNYRGIF   
Sbjct  3    VTPRLKISWSVVNLLVLLYALVPVLWIASLSFKPAGTIKDGKFIPEKWTLDNYRGIFDTS  62

Query  61   LFSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTP  120
             F+SALINSIGIGLI+TVIAVV+G MAAYA+ARL+FPGK+LL+G ALLI MFP ISLV+P
Sbjct  63   AFTSALINSIGIGLISTVIAVVIGTMAAYAIARLDFPGKKLLVGVALLIAMFPQISLVSP  122

Query  121  LFNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFR  180
            LF+IER +GLFDTW GLILPYITFALPLAIYTLSAFF+EIPW+LEKAA+MDGATPGQAFR
Sbjct  123  LFDIERRLGLFDTWAGLILPYITFALPLAIYTLSAFFKEIPWELEKAAQMDGATPGQAFR  182

Query  181  KVIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGS  240
            KV+ PLAAPG+VTA ILVFIF WNDLL A+SLT+T+ +ITAP AIANFTG+SQFEEPTGS
Sbjct  183  KVVAPLAAPGIVTAGILVFIFCWNDLLFAISLTSTERSITAPAAIANFTGASQFEEPTGS  242

Query  241  IAAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG  274
            IAA A+VITIPII+FVL FQRRIVAGLTSGAVKG
Sbjct  243  IAAAAMVITIPIIIFVLFFQRRIVAGLTSGAVKG  276


>gi|343928021|ref|ZP_08767486.1| putative ABC transporter permease protein [Gordonia alkanivorans 
NBRC 16433]
 gi|343762029|dbj|GAA14412.1| putative ABC transporter permease protein [Gordonia alkanivorans 
NBRC 16433]
Length=276

 Score =  419 bits (1077),  Expect = 2e-115, Method: Compositional matrix adjust.
 Identities = 219/271 (81%), Positives = 243/271 (90%), Gaps = 0/271 (0%)

Query  4    RRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFS  63
            +   +W++ + LV+ YAL+P+LWI SLS KP S+V DGK IPS  T DNY+ IF    F+
Sbjct  6    KTKAWWSIANILVILYALIPLLWIISLSFKPASSVTDGKFIPSEFTLDNYKSIFETSAFT  65

Query  64   SALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFN  123
            SALINSIG+GLITT+IAV+LG MAAYAVARLEFPGK++LIGAALLI MFP ISLVTPLFN
Sbjct  66   SALINSIGVGLITTLIAVILGTMAAYAVARLEFPGKKVLIGAALLIAMFPQISLVTPLFN  125

Query  124  IERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVI  183
            IER +GLFDTWPGLILPYITFALPLAIYTLSAFFREIPW+LEKAAKMDGATP QAFRKVI
Sbjct  126  IERRLGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWELEKAAKMDGATPWQAFRKVI  185

Query  184  VPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAA  243
             PLAAPG+VTAAILVFIFAWNDLLLALSLT+T+ AITAPVAIANFTGSSQFEEPTGSI+A
Sbjct  186  APLAAPGVVTAAILVFIFAWNDLLLALSLTSTERAITAPVAIANFTGSSQFEEPTGSISA  245

Query  244  GAIVITIPIIVFVLIFQRRIVAGLTSGAVKG  274
             A+VITIPII+FVL FQRRIVAGLTSGAVKG
Sbjct  246  AAVVITIPIIIFVLFFQRRIVAGLTSGAVKG  276


>gi|229493741|ref|ZP_04387523.1| ABC sugar transporter, permease component [Rhodococcus erythropolis 
SK121]
 gi|229319341|gb|EEN85180.1| ABC sugar transporter, permease component [Rhodococcus erythropolis 
SK121]
Length=276

 Score =  418 bits (1075),  Expect = 3e-115, Method: Compositional matrix adjust.
 Identities = 210/274 (77%), Positives = 238/274 (87%), Gaps = 0/274 (0%)

Query  1    VGARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGD  60
            V  R    W+V++ LV+ YAL+PVLWI SLS KP  T+KDGK IP   T DNYRGIF   
Sbjct  3    VTPRLKISWSVVNLLVLLYALVPVLWIASLSFKPAGTIKDGKFIPEKWTLDNYRGIFDTS  62

Query  61   LFSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTP  120
             F+SALINSIGIGLI+TVIAVV+G MAAYA+ARL+FPGK+LL+  ALLI MFP ISLV+P
Sbjct  63   AFTSALINSIGIGLISTVIAVVIGTMAAYAIARLDFPGKKLLVAVALLIAMFPQISLVSP  122

Query  121  LFNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFR  180
            LF+IER +GLFDTW GLILPYITFALPLAIYTLSAFF+EIPW+LEKAA+MDGATPGQAFR
Sbjct  123  LFDIERRLGLFDTWAGLILPYITFALPLAIYTLSAFFKEIPWELEKAAQMDGATPGQAFR  182

Query  181  KVIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGS  240
            KV+ PLAAPG+VTA ILVFIF WNDLL A+SLT+T+ +ITAP AIANFTG+SQFEEPTGS
Sbjct  183  KVVAPLAAPGIVTAGILVFIFCWNDLLFAISLTSTERSITAPAAIANFTGASQFEEPTGS  242

Query  241  IAAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG  274
            IAA A+VITIPII+FVL FQRRIVAGLTSGAVKG
Sbjct  243  IAAAAMVITIPIIIFVLFFQRRIVAGLTSGAVKG  276


>gi|296138928|ref|YP_003646171.1| binding-protein-dependent transporters inner membrane component 
[Tsukamurella paurometabola DSM 20162]
 gi|296027062|gb|ADG77832.1| binding-protein-dependent transport systems inner membrane component 
[Tsukamurella paurometabola DSM 20162]
Length=277

 Score =  414 bits (1064),  Expect = 7e-114, Method: Compositional matrix adjust.
 Identities = 205/272 (76%), Positives = 232/272 (86%), Gaps = 0/272 (0%)

Query  3    ARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLF  62
            A R   W+ +D LV+ YAL+PVLWI SLS KP +TV DG  IP   T DNY  IF G+ F
Sbjct  6    AGRKLAWSAIDLLVIAYALIPVLWIISLSFKPIATVGDGSFIPKNPTLDNYTAIFSGNGF  65

Query  63   SSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLF  122
               LINSIGI LI+TVIAV++G  AAYAVARL+FPGK+L +GAALLI MFP +SL+TPLF
Sbjct  66   VRPLINSIGIALISTVIAVIIGMFAAYAVARLQFPGKKLFVGAALLIAMFPQVSLITPLF  125

Query  123  NIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKV  182
            NIER +GLF+TWPGLILPYITFALPL +YTLSAFFREIPW+LEKAAKMDGATP QAFR+V
Sbjct  126  NIERKVGLFNTWPGLILPYITFALPLTVYTLSAFFREIPWELEKAAKMDGATPAQAFRRV  185

Query  183  IVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIA  242
            I PLAAPG+VTAAILVFIF WNDLL ALSLTAT A+ITAPVAI NFTGSS+FE PTGSI+
Sbjct  186  IAPLAAPGVVTAAILVFIFCWNDLLFALSLTATDASITAPVAIVNFTGSSEFETPTGSIS  245

Query  243  AGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG  274
            A A+++TIPII+FVLIFQRRIVAGLTSGAVKG
Sbjct  246  AAAVIVTIPIIIFVLIFQRRIVAGLTSGAVKG  277


>gi|118619614|ref|YP_907946.1| sugar-transport integral membrane protein ABC transporter SugB 
[Mycobacterium ulcerans Agy99]
 gi|118571724|gb|ABL06475.1| sugar-transport integral membrane protein ABC transporter SugB 
[Mycobacterium ulcerans Agy99]
Length=247

 Score =  412 bits (1060),  Expect = 2e-113, Method: Compositional matrix adjust.
 Identities = 222/246 (91%), Positives = 234/246 (96%), Gaps = 0/246 (0%)

Query  29   SLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFSSALINSIGIGLITTVIAVVLGAMAA  88
            SLS KPTSTVKDG+LIPS+VT DNYRG+F GDLFSSALINSIGIGL TTVIAV+LGAMAA
Sbjct  2    SLSPKPTSTVKDGRLIPSSVTLDNYRGVFGGDLFSSALINSIGIGLTTTVIAVLLGAMAA  61

Query  89   YAVARLEFPGKRLLIGAALLITMFPSISLVTPLFNIERAIGLFDTWPGLILPYITFALPL  148
             AVARL+FPGKRLL+G  LLITMFP+ISLVTPLFNIER IGLFDTWP LILPYITFALPL
Sbjct  62   CAVARLDFPGKRLLVGVTLLITMFPAISLVTPLFNIERRIGLFDTWPELILPYITFALPL  121

Query  149  AIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVIVPLAAPGLVTAAILVFIFAWNDLLL  208
            AIYTLSAFFREIPWDLEKAA+MDGATP QAFRKVIVPLAAPGLVTAAILVFIFAWNDLLL
Sbjct  122  AIYTLSAFFREIPWDLEKAAQMDGATPYQAFRKVIVPLAAPGLVTAAILVFIFAWNDLLL  181

Query  209  ALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAAGAIVITIPIIVFVLIFQRRIVAGLT  268
            ALSLTATKA+ITAP+AIANF GSSQFEEPTGSIAAGA+VIT+PIIVFVLIFQ RIVAGLT
Sbjct  182  ALSLTATKASITAPIAIANFAGSSQFEEPTGSIAAGAMVITVPIIVFVLIFQLRIVAGLT  241

Query  269  SGAVKG  274
            SGAVKG
Sbjct  242  SGAVKG  247


>gi|262201809|ref|YP_003273017.1| binding-protein-dependent transporter inner membrane component 
[Gordonia bronchialis DSM 43247]
 gi|262085156|gb|ACY21124.1| binding-protein-dependent transport systems inner membrane component 
[Gordonia bronchialis DSM 43247]
Length=276

 Score =  410 bits (1055),  Expect = 8e-113, Method: Compositional matrix adjust.
 Identities = 216/273 (80%), Positives = 242/273 (89%), Gaps = 0/273 (0%)

Query  2    GARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDL  61
             A+   +W++ + LV+ YA++P+LWI SLS K  +TV DG  IP   T +NY+GIF+   
Sbjct  4    SAKSKAWWSIANILVILYAVIPLLWIISLSFKSQATVLDGNFIPQEWTLENYKGIFKTSA  63

Query  62   FSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPL  121
            F+SALINSIGIGLITT+IAVVLG MAAYAVARL+FPGK++LIGAALLI MFP ISLVTPL
Sbjct  64   FTSALINSIGIGLITTLIAVVLGTMAAYAVARLDFPGKKVLIGAALLIAMFPQISLVTPL  123

Query  122  FNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRK  181
            FNIER +GLFDTWPGLILPYITFALPLAIYTLSAFFREIPW+LEKAAKMDGATP QAF K
Sbjct  124  FNIERRLGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWELEKAAKMDGATPWQAFSK  183

Query  182  VIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSI  241
            VI PLAAPG+VTAAILVFIFAWNDLLLALSLT+T+ AITAPVAIANFTGSSQF+EPTGSI
Sbjct  184  VITPLAAPGVVTAAILVFIFAWNDLLLALSLTSTERAITAPVAIANFTGSSQFQEPTGSI  243

Query  242  AAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG  274
            AA A+VITIPII+FVL FQRRIVAGLTSGAVKG
Sbjct  244  AAAAVVITIPIIIFVLFFQRRIVAGLTSGAVKG  276


>gi|257054717|ref|YP_003132549.1| carbohydrate ABC transporter membrane protein [Saccharomonospora 
viridis DSM 43017]
 gi|256584589|gb|ACU95722.1| carbohydrate ABC transporter membrane protein [Saccharomonospora 
viridis DSM 43017]
Length=282

 Score =  399 bits (1026),  Expect = 2e-109, Method: Compositional matrix adjust.
 Identities = 202/272 (75%), Positives = 229/272 (85%), Gaps = 0/272 (0%)

Query  3    ARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLF  62
            A R   WA++D +VV YAL+PVLWI SLS K   T+ DG  IP   T DNYR IF  + F
Sbjct  11   AARKARWALIDIIVVVYALVPVLWIVSLSFKTKETLADGNFIPREWTLDNYREIFATNEF  70

Query  63   SSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLF  122
               L+NSIGI LI T+IAVVLG MAAYAVARL+FPGK+LLIG +LLI MFP ISLVTPLF
Sbjct  71   IRPLLNSIGIALIATLIAVVLGMMAAYAVARLDFPGKKLLIGVSLLIAMFPQISLVTPLF  130

Query  123  NIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKV  182
            NIER +GLFDTWPGLILPYITFALPLAIYTLSAFFREIPW+LEKAAKMDGATPGQAFRKV
Sbjct  131  NIERELGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWELEKAAKMDGATPGQAFRKV  190

Query  183  IVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIA  242
            I PLAAPG+ T+AILVFIF WND L A+SLT+T+A+ T P A++ FTG+SQFE+PTG+I+
Sbjct  191  IAPLAAPGVFTSAILVFIFCWNDFLFAISLTSTEASRTVPAALSFFTGASQFEDPTGTIS  250

Query  243  AGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG  274
            A A+VITIPII+FVL FQRRIVAGLTSGAVKG
Sbjct  251  AAAVVITIPIILFVLFFQRRIVAGLTSGAVKG  282


>gi|256374956|ref|YP_003098616.1| ABC transporter inner membrane protein [Actinosynnema mirum DSM 
43827]
 gi|255919259|gb|ACU34770.1| binding-protein-dependent transport systems inner membrane component 
[Actinosynnema mirum DSM 43827]
Length=281

 Score =  399 bits (1024),  Expect = 3e-109, Method: Compositional matrix adjust.
 Identities = 198/270 (74%), Positives = 227/270 (85%), Gaps = 0/270 (0%)

Query  5    RATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFSS  64
            R   WAVL+T+VV YAL+PVLWI SLS K  +T+ DG  IP   T +NY+ IF    F  
Sbjct  12   RKARWAVLNTVVVAYALIPVLWIVSLSFKTPATLADGNFIPREWTLENYQAIFTTSEFVR  71

Query  65   ALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFNI  124
            AL+NSIGI LI T IAVV G MAAYA+ARL+FPGKRLL+G +LL++MFP ISLV+PLF I
Sbjct  72   ALVNSIGIALIATAIAVVFGTMAAYAIARLDFPGKRLLVGVSLLVSMFPQISLVSPLFEI  131

Query  125  ERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVIV  184
            ER +GLFDTWPGLILPY TFALPLAIYTLSAFFREIPW+LEKAAKMDGATPGQAFR+VI 
Sbjct  132  ERTLGLFDTWPGLILPYTTFALPLAIYTLSAFFREIPWELEKAAKMDGATPGQAFRRVIA  191

Query  185  PLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAAG  244
            PLAAPG+ T AILVFIF WND L A+SLT+T+++ T PVA++ FTGSSQFE+PTGSIAA 
Sbjct  192  PLAAPGVFTTAILVFIFCWNDFLFAISLTSTESSRTVPVALSFFTGSSQFEDPTGSIAAA  251

Query  245  AIVITIPIIVFVLIFQRRIVAGLTSGAVKG  274
            A+VIT+PIIVFVL FQRRIVAGLTSGAVKG
Sbjct  252  AVVITVPIIVFVLFFQRRIVAGLTSGAVKG  281


>gi|330468990|ref|YP_004406733.1| binding-protein-dependent transport systems inner membrane component 
[Verrucosispora maris AB-18-032]
 gi|328811961|gb|AEB46133.1| binding-protein-dependent transport systems inner membrane component 
[Verrucosispora maris AB-18-032]
Length=278

 Score =  394 bits (1013),  Expect = 6e-108, Method: Compositional matrix adjust.
 Identities = 198/273 (73%), Positives = 229/273 (84%), Gaps = 1/273 (0%)

Query  3    ARRAT-YWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDL  61
            ARRA   W +L+ +VV +AL+PVLWI SLS K  +T+ DGK IP   T DNYR IF  D 
Sbjct  6    ARRAKLQWGLLNAVVVVFALIPVLWIMSLSFKTPATLTDGKFIPREWTLDNYRNIFGTDQ  65

Query  62   FSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPL  121
            F  ALINSIGI +I TVIAVVLGAMAAYA++RL+FPGKRLLIG +LLI MFP +SLV+PL
Sbjct  66   FVRALINSIGIAMIATVIAVVLGAMAAYAISRLDFPGKRLLIGVSLLIAMFPQVSLVSPL  125

Query  122  FNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRK  181
            F IER +GLFDTWPGLILPYITFALPLAIYTLSAFF++IPWDLEKAAKMDGAT  QAFR+
Sbjct  126  FEIERQLGLFDTWPGLILPYITFALPLAIYTLSAFFKQIPWDLEKAAKMDGATQAQAFRR  185

Query  182  VIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSI  241
            VI PLAAPGL T AILVFIF WND L A+SLT+T+ + T PVA++ FTG+SQFE+PTG+I
Sbjct  186  VIAPLAAPGLFTTAILVFIFCWNDFLFAISLTSTERSRTVPVALSFFTGASQFEDPTGAI  245

Query  242  AAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG  274
             A A+VIT+PII+FVL FQRRIV+GLTSGAVKG
Sbjct  246  CAAAVVITVPIILFVLFFQRRIVSGLTSGAVKG  278


>gi|326382047|ref|ZP_08203740.1| multiple sugar transport system permease protein [Gordonia neofelifaecis 
NRRL B-59395]
 gi|326199473|gb|EGD56654.1| multiple sugar transport system permease protein [Gordonia neofelifaecis 
NRRL B-59395]
Length=276

 Score =  391 bits (1005),  Expect = 5e-107, Method: Compositional matrix adjust.
 Identities = 216/271 (80%), Positives = 237/271 (88%), Gaps = 0/271 (0%)

Query  4    RRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFS  63
            RR   W V + LVV YA++P+ WI SLS KP  +V DG  IP   TF+NY+GIF   LF+
Sbjct  6    RRKVGWTVANVLVVLYAIIPLWWIISLSFKPPGSVTDGSFIPKQWTFENYKGIFDTSLFT  65

Query  64   SALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFN  123
            SALINSIGIGLITTVIAVVLG MAAYAVARLEF GK++LIGAALLI MFP ISLVTPLFN
Sbjct  66   SALINSIGIGLITTVIAVVLGTMAAYAVARLEFRGKKVLIGAALLIAMFPQISLVTPLFN  125

Query  124  IERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVI  183
            IER +GLFDTW GLILPY+ FALPLAIYTLSAFFREIPWDLEKAA+MDGATP QAFR+VI
Sbjct  126  IERRLGLFDTWLGLILPYVAFALPLAIYTLSAFFREIPWDLEKAAQMDGATPSQAFRRVI  185

Query  184  VPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAA  243
            VPLAAPG+VTAAILVFIFAWNDLLLALSLT+T+ A TAPVAI+ FTGSSQFEEPTG+IAA
Sbjct  186  VPLAAPGVVTAAILVFIFAWNDLLLALSLTSTENAETAPVAISQFTGSSQFEEPTGAIAA  245

Query  244  GAIVITIPIIVFVLIFQRRIVAGLTSGAVKG  274
             A+VITIPII+FVL FQRRIVAGLTSGAVKG
Sbjct  246  AAVVITIPIIIFVLFFQRRIVAGLTSGAVKG  276


>gi|331694916|ref|YP_004331155.1| ABC transporter integral membrane subunit [Pseudonocardia dioxanivorans 
CB1190]
 gi|326949605|gb|AEA23302.1| ABC-type transporter, integral membrane subunit [Pseudonocardia 
dioxanivorans CB1190]
Length=278

 Score =  390 bits (1003),  Expect = 9e-107, Method: Compositional matrix adjust.
 Identities = 197/272 (73%), Positives = 229/272 (85%), Gaps = 0/272 (0%)

Query  3    ARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLF  62
            A +   W +++ LV+ YAL+PVLWI SLS K   T+ DG  IP + T+ NY  IF+ +LF
Sbjct  7    ANKKIGWGLINLLVILYALIPVLWIVSLSFKTADTITDGNFIPRSWTWSNYAQIFQINLF  66

Query  63   SSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLF  122
            +SAL NSIGI LI+TVIAVV+G MAAYA+ARL+FPGK+ L+G +LLI MFP ISLV+PLF
Sbjct  67   TSALRNSIGIALISTVIAVVIGTMAAYAIARLDFPGKKALVGVSLLIAMFPQISLVSPLF  126

Query  123  NIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKV  182
            +IERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPW+LEKAAKMDGATP QAFR V
Sbjct  127  DIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWELEKAAKMDGATPLQAFRSV  186

Query  183  IVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIA  242
            IVPLAAPG+ T AILVFIF WND L A+SLT+T  + TA VAI+ FTG+SQF EPTGSIA
Sbjct  187  IVPLAAPGVFTTAILVFIFCWNDFLFAVSLTSTSRSQTATVAISQFTGASQFAEPTGSIA  246

Query  243  AGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG  274
            A A+++TIPII+FVL FQRRIVAGLTSGAVKG
Sbjct  247  AAAVLLTIPIIIFVLFFQRRIVAGLTSGAVKG  278


>gi|300783010|ref|YP_003763301.1| sugar ABC transporter permease [Amycolatopsis mediterranei U32]
 gi|299792524|gb|ADJ42899.1| permease component of ABC-type sugar transport system [Amycolatopsis 
mediterranei U32]
 gi|340524387|gb|AEK39592.1| sugar ABC transporter permease [Amycolatopsis mediterranei S699]
Length=279

 Score =  388 bits (997),  Expect = 4e-106, Method: Compositional matrix adjust.
 Identities = 193/270 (72%), Positives = 224/270 (83%), Gaps = 0/270 (0%)

Query  5    RATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFSS  64
            R   W ++D LV+ +AL+PVLW+ SLS K   T+ DG  IP   T+ NY  IF+   F  
Sbjct  10   RKVRWGLVDILVLVFALVPVLWVVSLSFKTKDTITDGSFIPQAWTWQNYADIFQTSEFLL  69

Query  65   ALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFNI  124
            AL+NSIGI +I+TVIAVVLG MAAYAVARL+FPGK++L+G +LLI MFP +SLVTPLFNI
Sbjct  70   ALVNSIGIAIISTVIAVVLGTMAAYAVARLDFPGKQVLVGLSLLIAMFPQVSLVTPLFNI  129

Query  125  ERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVIV  184
            ER IGLFDTWPGLILPYITFALPL+IYTLSAFFREIPW+LEKAAKMDGATP QAFR+VI 
Sbjct  130  ERNIGLFDTWPGLILPYITFALPLSIYTLSAFFREIPWELEKAAKMDGATPAQAFRRVIA  189

Query  185  PLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAAG  244
            PLAAPG+ T AILVFIF WND L A+SLT+T A+ T P A++ FTGSSQFE+PTG ++A 
Sbjct  190  PLAAPGVFTTAILVFIFCWNDFLFAISLTSTTASRTVPAALSFFTGSSQFEDPTGQVSAA  249

Query  245  AIVITIPIIVFVLIFQRRIVAGLTSGAVKG  274
            A+VITIPIIVFVL FQRRIVAGLTSGAVKG
Sbjct  250  AVVITIPIIVFVLFFQRRIVAGLTSGAVKG  279


>gi|238060004|ref|ZP_04604713.1| ABC sugar transporter permease component [Micromonospora sp. 
ATCC 39149]
 gi|237881815|gb|EEP70643.1| ABC sugar transporter permease component [Micromonospora sp. 
ATCC 39149]
Length=283

 Score =  387 bits (994),  Expect = 9e-106, Method: Compositional matrix adjust.
 Identities = 190/271 (71%), Positives = 224/271 (83%), Gaps = 0/271 (0%)

Query  4    RRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFS  63
            R    W +LD +VV +AL+PVLWI SLS K  +T+ DG+  P   T DNYR IF  D F 
Sbjct  13   RAKLRWGLLDVIVVVFALVPVLWIASLSFKTPATLTDGRFWPREWTLDNYRSIFDTDQFV  72

Query  64   SALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFN  123
             AL+NS+GI LI T++AVVLGAMAAYA++RL+FPGK+LL+G ALLI MFP +SLV+PLF 
Sbjct  73   RALVNSVGIALIATLVAVVLGAMAAYAISRLDFPGKKLLVGVALLIAMFPQVSLVSPLFE  132

Query  124  IERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVI  183
            IER +GLFDTWPGLILPYITFALPLAIYTLSAFF++IPWDLEKAAKMDGAT GQAFR+VI
Sbjct  133  IERQLGLFDTWPGLILPYITFALPLAIYTLSAFFKQIPWDLEKAAKMDGATQGQAFRRVI  192

Query  184  VPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAA  243
             PLAAPGL T AILVFIF WND L A++LT+T+ A T PVA++ FTG SQFE+PTG+I A
Sbjct  193  APLAAPGLFTTAILVFIFCWNDFLFAITLTSTERARTVPVALSFFTGESQFEDPTGAICA  252

Query  244  GAIVITIPIIVFVLIFQRRIVAGLTSGAVKG  274
             A+VIT+PI+ FVL FQRRIV+GLTSGAVKG
Sbjct  253  AAVVITVPIVAFVLFFQRRIVSGLTSGAVKG  283


>gi|134097643|ref|YP_001103304.1| ABC sugar transporter, permease component [Saccharopolyspora 
erythraea NRRL 2338]
 gi|291008813|ref|ZP_06566786.1| ABC sugar transporter, permease component [Saccharopolyspora 
erythraea NRRL 2338]
 gi|133910266|emb|CAM00379.1| ABC sugar transporter, permease component [Saccharopolyspora 
erythraea NRRL 2338]
Length=281

 Score =  385 bits (990),  Expect = 3e-105, Method: Compositional matrix adjust.
 Identities = 196/270 (73%), Positives = 222/270 (83%), Gaps = 0/270 (0%)

Query  5    RATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFSS  64
            R   W VL+ +VV YALLPVLWI SLS K  +T+ DG LIP   T +NY  IF    F+ 
Sbjct  12   RKAGWTVLNIVVVIYALLPVLWILSLSFKTPATLGDGSLIPREWTLENYAAIFSTTEFTR  71

Query  65   ALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFNI  124
            AL+NSIGI LI T IAVVLG MAAYA+ARLEFPGKRLL+G +LLI MFP +SLV+PLF I
Sbjct  72   ALLNSIGIALIATAIAVVLGTMAAYAIARLEFPGKRLLVGVSLLIAMFPQVSLVSPLFEI  131

Query  125  ERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVIV  184
            ER +GLFD+W GLILPYITF+LPLAIYTLSAFFREIPW+LEKAAKMDGATPGQAF KVI 
Sbjct  132  ERTLGLFDSWTGLILPYITFSLPLAIYTLSAFFREIPWELEKAAKMDGATPGQAFAKVIA  191

Query  185  PLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAAG  244
            PLAAPG+ T AILVFIF WND L A+SLT+T+ + T PVA+  FTG SQFE+PTGSI+A 
Sbjct  192  PLAAPGVFTTAILVFIFCWNDFLFAISLTSTENSRTVPVALQFFTGDSQFEDPTGSISAA  251

Query  245  AIVITIPIIVFVLIFQRRIVAGLTSGAVKG  274
            A+VITIPIIVFVL FQRRIV+GLTSGAVKG
Sbjct  252  AVVITIPIIVFVLFFQRRIVSGLTSGAVKG  281


>gi|302524365|ref|ZP_07276707.1| ABC sugar transporter [Streptomyces sp. AA4]
 gi|302433260|gb|EFL05076.1| ABC sugar transporter [Streptomyces sp. AA4]
Length=280

 Score =  383 bits (983),  Expect = 2e-104, Method: Compositional matrix adjust.
 Identities = 187/270 (70%), Positives = 224/270 (83%), Gaps = 0/270 (0%)

Query  5    RATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFSS  64
            R   W +LD LV+ +A++PVLW+ SLS K  +T+ DG  IP+  T  NY  IF+   F  
Sbjct  11   RKVGWGLLDILVLVFAIVPVLWVLSLSFKTKATLTDGNFIPTEWTLKNYADIFQTTEFLH  70

Query  65   ALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFNI  124
            AL+NSIGI +I+T+IAVVLG MAAYA+ARL+FPGK++L+G +LLI MFP +SLVTPLFNI
Sbjct  71   ALVNSIGIAVISTLIAVVLGTMAAYAIARLDFPGKQVLVGLSLLIAMFPQVSLVTPLFNI  130

Query  125  ERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVIV  184
            ER +GLFDTWPGLILPYITFALPL+IYTLSAFFREIPW+LEKAAKMDGATP QAFRKVI 
Sbjct  131  ERGLGLFDTWPGLILPYITFALPLSIYTLSAFFREIPWELEKAAKMDGATPAQAFRKVIA  190

Query  185  PLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAAG  244
            PLAAPG+ T AILVFI  WND L A+SLT+T+++ T P A++ FTGSSQFE+PTG + A 
Sbjct  191  PLAAPGVFTTAILVFILCWNDFLFAISLTSTESSRTVPAALSFFTGSSQFEDPTGQVCAA  250

Query  245  AIVITIPIIVFVLIFQRRIVAGLTSGAVKG  274
            A+VIT+PII+FVL FQRRIVAGLTSGAVKG
Sbjct  251  AVVITVPIILFVLFFQRRIVAGLTSGAVKG  280


>gi|302562113|ref|ZP_07314455.1| sugar ABC transporter, permease [Streptomyces griseoflavus Tu4000]
 gi|302479731|gb|EFL42824.1| sugar ABC transporter, permease [Streptomyces griseoflavus Tu4000]
Length=277

 Score =  380 bits (975),  Expect = 2e-103, Method: Compositional matrix adjust.
 Identities = 200/273 (74%), Positives = 225/273 (83%), Gaps = 0/273 (0%)

Query  2    GARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDL  61
            G   AT W V++ +VV YAL PV WI +LS K  +T+ DG  IP   T +NYRGIF    
Sbjct  5    GRTHATRWVVVNVVVVLYALFPVWWIAALSFKDPATLTDGDYIPRDWTLENYRGIFATSE  64

Query  62   FSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPL  121
            F+ AL+NSIGI LI TVIAV LG MAAYAVARL FPGKRLLIG +LLI MFP ISLV+PL
Sbjct  65   FTRALVNSIGIALIATVIAVALGTMAAYAVARLRFPGKRLLIGMSLLIAMFPPISLVSPL  124

Query  122  FNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRK  181
            F+IER IG+FDTW GLI+PY+TF+LPLAIYTLSAFFREIPWDLEKAAK+DGATP QAFR 
Sbjct  125  FDIERTIGIFDTWLGLIIPYMTFSLPLAIYTLSAFFREIPWDLEKAAKVDGATPAQAFRL  184

Query  182  VIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSI  241
            VIVPLAAPG+ T AILVFIF WND L A+SLT+T++A T P AIA FTGSSQF +PTGSI
Sbjct  185  VIVPLAAPGVFTTAILVFIFCWNDFLFAISLTSTESARTVPAAIAFFTGSSQFAQPTGSI  244

Query  242  AAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG  274
            AA A+VITIPIIVFVL+FQRRIVAGLTSGAVKG
Sbjct  245  AAAAVVITIPIIVFVLLFQRRIVAGLTSGAVKG  277


>gi|291435774|ref|ZP_06575164.1| binding-protein-dependent transport systems inner membrane component 
[Streptomyces ghanaensis ATCC 14672]
 gi|291338669|gb|EFE65625.1| binding-protein-dependent transport systems inner membrane component 
[Streptomyces ghanaensis ATCC 14672]
Length=277

 Score =  378 bits (970),  Expect = 7e-103, Method: Compositional matrix adjust.
 Identities = 195/273 (72%), Positives = 226/273 (83%), Gaps = 0/273 (0%)

Query  2    GARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDL  61
            G   AT W V++ +VV YAL PV WI +LS K   T+ DG  IP   T++NYRGIF    
Sbjct  5    GRTHATRWGVVNVVVVLYALFPVWWIAALSFKDPGTLTDGDYIPRKWTWENYRGIFETSE  64

Query  62   FSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPL  121
            F+ AL+NSIGI LI T IAV LG MAAYAVARL FPGK++LIG +LLI MFP ISLV+PL
Sbjct  65   FTRALVNSIGIALIATTIAVALGTMAAYAVARLRFPGKQVLIGMSLLIAMFPPISLVSPL  124

Query  122  FNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRK  181
            F+IER+IG+FDTW GLI+PY+TF+LPLAIYTLSAFFREIPWDLEKAAK+DGATP QAFR 
Sbjct  125  FDIERSIGIFDTWLGLIIPYMTFSLPLAIYTLSAFFREIPWDLEKAAKVDGATPAQAFRM  184

Query  182  VIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSI  241
            VIVPLAAPG+ T AILVFIF WND L A+SLT+T++A T P AIA FTGSSQF++PTGSI
Sbjct  185  VIVPLAAPGVFTTAILVFIFCWNDFLFAISLTSTESARTVPAAIAFFTGSSQFQQPTGSI  244

Query  242  AAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG  274
            AA A+VIT+PI+VFVL+FQRRIVAGLTSGAVKG
Sbjct  245  AAAAVVITVPIVVFVLLFQRRIVAGLTSGAVKG  277


>gi|312197859|ref|YP_004017920.1| binding-protein-dependent transport systems inner membrane component 
[Frankia sp. EuI1c]
 gi|311229195|gb|ADP82050.1| binding-protein-dependent transport systems inner membrane component 
[Frankia sp. EuI1c]
Length=295

 Score =  377 bits (968),  Expect = 9e-103, Method: Compositional matrix adjust.
 Identities = 185/266 (70%), Positives = 225/266 (85%), Gaps = 0/266 (0%)

Query  9    WAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFSSALIN  68
            W+V + +++  +L+P+LW+ SLS K  ST+ DG  IP T T +NYRGIF   LF+ AL+N
Sbjct  30   WSVANLVIIAISLVPMLWLVSLSFKAPSTITDGHFIPRTWTLENYRGIFTESLFTRALLN  89

Query  69   SIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFNIERAI  128
            S+GI LI+TV+AV LG+MAAYA+ARLEFPGKRLL+G ALLI MFP +SLV+PLFN+ R I
Sbjct  90   SLGIALISTVLAVALGSMAAYAIARLEFPGKRLLVGLALLIAMFPQVSLVSPLFNVWRQI  149

Query  129  GLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVIVPLAA  188
            G+FDTW GLI+PY+TF+LPLAIYTLSAFFREIPWDLEKAA++DGATP QAF +VI PLAA
Sbjct  150  GIFDTWVGLIIPYLTFSLPLAIYTLSAFFREIPWDLEKAAQVDGATPLQAFLRVIAPLAA  209

Query  189  PGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAAGAIVI  248
            PG+VT AILVFIF WND L ++SLT+T+ + T P AIA FTG+SQF +P GSIAA A+VI
Sbjct  210  PGMVTTAILVFIFCWNDFLFSISLTSTERSRTVPAAIAFFTGASQFAQPIGSIAAAAVVI  269

Query  249  TIPIIVFVLIFQRRIVAGLTSGAVKG  274
            TIPII+FVL+FQRRIVAGLTSGAVKG
Sbjct  270  TIPIIIFVLLFQRRIVAGLTSGAVKG  295


>gi|213966430|ref|ZP_03394607.1| ABC sugar transporter, permease component [Corynebacterium amycolatum 
SK46]
 gi|213950923|gb|EEB62328.1| ABC sugar transporter, permease component [Corynebacterium amycolatum 
SK46]
Length=279

 Score =  374 bits (961),  Expect = 6e-102, Method: Compositional matrix adjust.
 Identities = 196/271 (73%), Positives = 232/271 (86%), Gaps = 0/271 (0%)

Query  4    RRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFS  63
            ++   W +   LVV YAL+PVLWI SLS KPT+ + DG  IP   T DNYRGIF+   F+
Sbjct  9    KQRVAWTIGIALVVIYALVPVLWIASLSFKPTTDLHDGHFIPRNWTLDNYRGIFQTSEFT  68

Query  64   SALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFN  123
             AL NSIGIGLITT++AV++G MAAYA+ARLEFPGK +++G +LLI MFP +SLV+PLF+
Sbjct  69   RALFNSIGIGLITTLLAVIVGTMAAYAIARLEFPGKSVILGVSLLIAMFPQVSLVSPLFD  128

Query  124  IERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVI  183
            IER +GLFDTWPGLILPYITFALP+AI+ LS+FFREIPW+LEKAA+MDGATP QAFR V+
Sbjct  129  IERKLGLFDTWPGLILPYITFALPMAIFILSSFFREIPWELEKAAQMDGATPFQAFRLVV  188

Query  184  VPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAA  243
             PLA PG+VTAAILVFIFAWND LLA+SLT+T+ A TAP A+ANFTGSSQF+EPTGSIAA
Sbjct  189  APLAIPGIVTAAILVFIFAWNDFLLAVSLTSTEVARTAPAAMANFTGSSQFDEPTGSIAA  248

Query  244  GAIVITIPIIVFVLIFQRRIVAGLTSGAVKG  274
             AIVITIPI++FV+IFQRRIVAGLTSGAVKG
Sbjct  249  AAIVITIPIVIFVVIFQRRIVAGLTSGAVKG  279


>gi|158316384|ref|YP_001508892.1| binding-protein-dependent transport systems inner membrane component 
[Frankia sp. EAN1pec]
 gi|158111789|gb|ABW13986.1| binding-protein-dependent transport systems inner membrane component 
[Frankia sp. EAN1pec]
Length=295

 Score =  372 bits (955),  Expect = 3e-101, Method: Compositional matrix adjust.
 Identities = 184/266 (70%), Positives = 223/266 (84%), Gaps = 0/266 (0%)

Query  9    WAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFSSALIN  68
            W+  + ++VG +L+P+LW+ SLS K  +++ DG  IP   TF+NYR IF   LF+ AL+N
Sbjct  30   WSAANLVIVGMSLVPLLWLVSLSFKTPASITDGSFIPREWTFENYREIFGESLFTRALLN  89

Query  69   SIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFNIERAI  128
            S+GI LI+T +AVVLG+MAAYA+ARL FPGKRLL+G ALLI MFP ISLV+PLFN+ R I
Sbjct  90   SLGIALISTALAVVLGSMAAYAIARLAFPGKRLLVGLALLIAMFPQISLVSPLFNLWRQI  149

Query  129  GLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVIVPLAA  188
            G+FDTW GLI+PY+TF+LPLAIYTLSAFFREIPWDLEKAA++DGATP QAF +VI PLAA
Sbjct  150  GIFDTWLGLIIPYLTFSLPLAIYTLSAFFREIPWDLEKAAQVDGATPRQAFLRVIAPLAA  209

Query  189  PGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAAGAIVI  248
            PG+VT AILVFIF WND L A+SLT+T+ + T P AIA FTG+SQF +P GSIAA A+VI
Sbjct  210  PGMVTTAILVFIFCWNDFLFAISLTSTEQSRTVPAAIAFFTGASQFAQPIGSIAAAAVVI  269

Query  249  TIPIIVFVLIFQRRIVAGLTSGAVKG  274
            TIPII+FVL+FQRRIVAGLTSGAVKG
Sbjct  270  TIPIIIFVLLFQRRIVAGLTSGAVKG  295


>gi|291298568|ref|YP_003509846.1| binding-protein-dependent transporter inner membrane component 
[Stackebrandtia nassauensis DSM 44728]
 gi|290567788|gb|ADD40753.1| binding-protein-dependent transport systems inner membrane component 
[Stackebrandtia nassauensis DSM 44728]
Length=273

 Score =  372 bits (954),  Expect = 5e-101, Method: Compositional matrix adjust.
 Identities = 179/270 (67%), Positives = 224/270 (83%), Gaps = 0/270 (0%)

Query  5    RATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFSS  64
            +   W VLD +V+ +AL+PV W+ SLSLK  ST+ DG  +PS  TFDNY  +F    F  
Sbjct  4    KKAQWTVLDLVVIAFALIPVAWLTSLSLKDPSTIADGGFLPSKWTFDNYVNVFTDGGFLQ  63

Query  65   ALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFNI  124
             L+NSIGI LI+T +A++LG  AAYA+ARLEFPG+ +++GAALL+ MFP +SLVTPLFNI
Sbjct  64   PLVNSIGIALISTFVAILLGTFAAYAIARLEFPGRNIMLGAALLVAMFPQVSLVTPLFNI  123

Query  125  ERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVIV  184
            ER +GLF+TWPGLILPY+TFALPL IYT+S FFREIPW+LEKAAKMDGA+  QAFRKVIV
Sbjct  124  ERNLGLFNTWPGLILPYVTFALPLTIYTMSTFFREIPWELEKAAKMDGASGFQAFRKVIV  183

Query  185  PLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAAG  244
            PLA PG+VTAA+L FI +WND L A+SLT+T+ A TAP AI+ FTG+SQFE+PTGS++A 
Sbjct  184  PLATPGVVTAAVLAFIQSWNDFLFAISLTSTERARTAPAAISFFTGASQFEDPTGSVSAA  243

Query  245  AIVITIPIIVFVLIFQRRIVAGLTSGAVKG  274
            A+++TIPI++FVLIFQRRIV+GLT+GAVKG
Sbjct  244  AVIVTIPIVIFVLIFQRRIVSGLTAGAVKG  273


>gi|302868629|ref|YP_003837266.1| binding-protein-dependent transport systems inner membrane component 
[Micromonospora aurantiaca ATCC 27029]
 gi|315504899|ref|YP_004083786.1| binding-protein-dependent transport systems inner membrane component 
[Micromonospora sp. L5]
 gi|302571488|gb|ADL47690.1| binding-protein-dependent transport systems inner membrane component 
[Micromonospora aurantiaca ATCC 27029]
 gi|315411518|gb|ADU09635.1| binding-protein-dependent transport systems inner membrane component 
[Micromonospora sp. L5]
Length=278

 Score =  364 bits (934),  Expect = 9e-99, Method: Compositional matrix adjust.
 Identities = 179/249 (72%), Positives = 207/249 (84%), Gaps = 0/249 (0%)

Query  26   WIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFSSALINSIGIGLITTVIAVVLGA  85
            WI SLS K  +T+ DGK  P   T DNYR IF  D F  AL+NSIGI LI T IAVVLG 
Sbjct  30   WIASLSFKTPATLTDGKFWPREWTLDNYRTIFDTDQFVRALVNSIGIALIATAIAVVLGT  89

Query  86   MAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFNIERAIGLFDTWPGLILPYITFA  145
            MAAYA++RL+FPGK+LL+G +LLI MFP +SLV+PLF IER +GLFDTWPGLILPYITFA
Sbjct  90   MAAYAISRLDFPGKKLLVGVSLLIAMFPQVSLVSPLFEIERQLGLFDTWPGLILPYITFA  149

Query  146  LPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVIVPLAAPGLVTAAILVFIFAWND  205
            LPLAIYTLSAFF++IPWDLEKAAKMDGAT GQAFR+VI PLAAPG+ T AILVFIF WND
Sbjct  150  LPLAIYTLSAFFKQIPWDLEKAAKMDGATQGQAFRRVIAPLAAPGVFTTAILVFIFCWND  209

Query  206  LLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAAGAIVITIPIIVFVLIFQRRIVA  265
             L A++LT+T+ + T PVA+  FTG SQFE+PTG+I A A+VIT+PII+FVL FQRRIV+
Sbjct  210  FLFAITLTSTERSRTVPVALQFFTGESQFEDPTGAICAAAVVITVPIILFVLFFQRRIVS  269

Query  266  GLTSGAVKG  274
            GLTSGAVKG
Sbjct  270  GLTSGAVKG  278


>gi|111223173|ref|YP_713967.1| sugar ABC transporter membrane protein [Frankia alni ACN14a]
 gi|111150705|emb|CAJ62406.1| putative sugar transport protein (ABC superfamily, membrane) 
[Frankia alni ACN14a]
Length=245

 Score =  350 bits (898),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 176/245 (72%), Positives = 210/245 (86%), Gaps = 0/245 (0%)

Query  30   LSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFSSALINSIGIGLITTVIAVVLGAMAAY  89
            +S K  ++V DG+ +P   T++NYRGIF   LF+ AL+NS+GI LI+TV+AVV+GAMAAY
Sbjct  1    MSFKTPASVGDGRFVPRHWTWENYRGIFDASLFTRALVNSVGIALISTVLAVVVGAMAAY  60

Query  90   AVARLEFPGKRLLIGAALLITMFPSISLVTPLFNIERAIGLFDTWPGLILPYITFALPLA  149
            AVARL FPG+RLL+G ALLI MFP ISLV+PLFN+ R IG+FDTW GLI+PY+TF+LPLA
Sbjct  61   AVARLVFPGRRLLVGLALLIAMFPQISLVSPLFNLWRQIGIFDTWIGLIVPYLTFSLPLA  120

Query  150  IYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVIVPLAAPGLVTAAILVFIFAWNDLLLA  209
            IYTLSAFFREIP DLE+AA +DGA+P QAF +VIVPLAAPGLVT AILVFIF WND L A
Sbjct  121  IYTLSAFFREIPRDLERAAAVDGASPWQAFTRVIVPLAAPGLVTTAILVFIFCWNDFLFA  180

Query  210  LSLTATKAAITAPVAIANFTGSSQFEEPTGSIAAGAIVITIPIIVFVLIFQRRIVAGLTS  269
            +SLT+T+++ T P AIA FTG+SQF +P GSIAA A+VITIPIIVFVL+FQRRIVAGLTS
Sbjct  181  ISLTSTESSRTVPAAIAFFTGASQFTQPIGSIAAAAVVITIPIIVFVLVFQRRIVAGLTS  240

Query  270  GAVKG  274
            GAVKG
Sbjct  241  GAVKG  245


>gi|77163815|ref|YP_342340.1| ABC transporter, inner membrane subunit [Nitrosococcus oceani 
ATCC 19707]
 gi|76882129|gb|ABA56810.1| carbohydrate ABC transporter membrane protein 2, CUT1 family 
[Nitrosococcus oceani ATCC 19707]
Length=280

 Score =  349 bits (896),  Expect = 2e-94, Method: Compositional matrix adjust.
 Identities = 175/267 (66%), Positives = 218/267 (82%), Gaps = 0/267 (0%)

Query  8    YWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFSSALI  67
            +W     +V+ YAL+PV+WI SLSLK  + + D +  P+TV+F++Y+ IF+   F +AL 
Sbjct  14   FWGASSLIVMVYALIPVIWIISLSLKRGADLNDNRFFPATVSFEHYQAIFQDPQFPAALW  73

Query  68   NSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFNIERA  127
            NSIGIG I+T++AV+L   AAYA+ RLEFPGKRL++  AL I MFP I+++ PLFN+ R 
Sbjct  74   NSIGIGAISTLLAVLLAMFAAYAIVRLEFPGKRLILSGALAIAMFPPIAIIGPLFNLWRQ  133

Query  128  IGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVIVPLA  187
            IGLFDTW GLILPY+TF LPLAI+TLSAFF+EIPWDL+KAA++DGATP QAFRKVIVPLA
Sbjct  134  IGLFDTWLGLILPYMTFTLPLAIWTLSAFFKEIPWDLDKAARVDGATPFQAFRKVIVPLA  193

Query  188  APGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAAGAIV  247
            APG+ TAAILVFIFAWND L A+SLT+T  A T P AIA FTG+S+FE P GSIAA ++V
Sbjct  194  APGVFTAAILVFIFAWNDFLFAMSLTSTAQARTVPAAIAFFTGTSRFELPVGSIAAASVV  253

Query  248  ITIPIIVFVLIFQRRIVAGLTSGAVKG  274
            +T+PI+V VLIFQRRIVAGLT+GAVKG
Sbjct  254  VTLPIVVIVLIFQRRIVAGLTAGAVKG  280


>gi|254436228|ref|ZP_05049735.1| ABC transporter, permease protein, putative [Nitrosococcus oceani 
AFC27]
 gi|207089339|gb|EDZ66611.1| ABC transporter, permease protein, putative [Nitrosococcus oceani 
AFC27]
Length=272

 Score =  349 bits (896),  Expect = 2e-94, Method: Compositional matrix adjust.
 Identities = 175/267 (66%), Positives = 218/267 (82%), Gaps = 0/267 (0%)

Query  8    YWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFSSALI  67
            +W     +V+ YAL+PV+WI SLSLK  + + D +  P+TV+F++Y+ IF+   F +AL 
Sbjct  6    FWGASSLIVMVYALIPVIWIISLSLKRGADLNDNRFFPATVSFEHYQAIFQDPQFPAALW  65

Query  68   NSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFNIERA  127
            NSIGIG I+T++AV+L   AAYA+ RLEFPGKRL++  AL I MFP I+++ PLFN+ R 
Sbjct  66   NSIGIGAISTLLAVLLAMFAAYAIVRLEFPGKRLILSGALAIAMFPPIAIIGPLFNLWRQ  125

Query  128  IGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVIVPLA  187
            IGLFDTW GLILPY+TF LPLAI+TLSAFF+EIPWDL+KAA++DGATP QAFRKVIVPLA
Sbjct  126  IGLFDTWLGLILPYMTFTLPLAIWTLSAFFKEIPWDLDKAARVDGATPFQAFRKVIVPLA  185

Query  188  APGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAAGAIV  247
            APG+ TAAILVFIFAWND L A+SLT+T  A T P AIA FTG+S+FE P GSIAA ++V
Sbjct  186  APGVFTAAILVFIFAWNDFLFAMSLTSTAQARTVPAAIAFFTGTSRFELPVGSIAAASVV  245

Query  248  ITIPIIVFVLIFQRRIVAGLTSGAVKG  274
            +T+PI+V VLIFQRRIVAGLT+GAVKG
Sbjct  246  VTLPIVVIVLIFQRRIVAGLTAGAVKG  272


>gi|292491691|ref|YP_003527130.1| binding-protein-dependent transporters inner membrane component 
[Nitrosococcus halophilus Nc4]
 gi|291580286|gb|ADE14743.1| binding-protein-dependent transport systems inner membrane component 
[Nitrosococcus halophilus Nc4]
Length=281

 Score =  348 bits (894),  Expect = 4e-94, Method: Compositional matrix adjust.
 Identities = 174/267 (66%), Positives = 216/267 (81%), Gaps = 0/267 (0%)

Query  8    YWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFSSALI  67
            +W     +V+ YAL+PV WI SLSLK  + + D +  P T++F++Y+ IF+   F +AL 
Sbjct  15   FWGSGSVVVIIYALIPVAWIISLSLKRGADLNDNRFFPRTLSFEHYQAIFQDPQFPAALW  74

Query  68   NSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFNIERA  127
            NS+GIG I+T+ AV+L   AAYA+ RLEFPGKR+++  AL I MFP I+++ PLFN+ R 
Sbjct  75   NSVGIGAISTLFAVILAMFAAYAIVRLEFPGKRIILSGALAIAMFPPIAIIGPLFNLWRQ  134

Query  128  IGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVIVPLA  187
            IGLFDTW GLILPY+TF LPLAI+TLSAFFREIPWDL+KAA++DGATP QAFRKVIVPLA
Sbjct  135  IGLFDTWLGLILPYMTFTLPLAIWTLSAFFREIPWDLDKAARVDGATPFQAFRKVIVPLA  194

Query  188  APGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAAGAIV  247
            APG+ TAAILVFIFAWND L A+SLT+T  A T P AIA FTG+S+FE PTGSIAA ++V
Sbjct  195  APGVFTAAILVFIFAWNDFLFAISLTSTNQARTVPAAIAFFTGASRFELPTGSIAAASVV  254

Query  248  ITIPIIVFVLIFQRRIVAGLTSGAVKG  274
            +T+PI++ VLIFQRRIVAGLTSGAVKG
Sbjct  255  VTLPIVIIVLIFQRRIVAGLTSGAVKG  281


>gi|291302104|ref|YP_003513382.1| binding-protein-dependent transporter inner membrane component 
[Stackebrandtia nassauensis DSM 44728]
 gi|290571324|gb|ADD44289.1| binding-protein-dependent transport systems inner membrane component 
[Stackebrandtia nassauensis DSM 44728]
Length=273

 Score =  343 bits (881),  Expect = 1e-92, Method: Compositional matrix adjust.
 Identities = 180/266 (68%), Positives = 216/266 (82%), Gaps = 0/266 (0%)

Query  9    WAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFSSALIN  68
            W++L+T+VV +AL+PVLW+ SLSLK  ST  DG   P   TFDNY  +F    F   LIN
Sbjct  8    WSLLNTVVVAFALIPVLWLVSLSLKHPSTYTDGNFFPVKPTFDNYVNVFSSGGFFQPLIN  67

Query  69   SIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFNIERAI  128
            SIGI LI T IA+++G  AAYA+ARL FPG+ L++GAALL+ MFP +SLVTPLF IER +
Sbjct  68   SIGISLIATGIALLVGTFAAYAIARLNFPGRNLMLGAALLVAMFPQVSLVTPLFEIERNL  127

Query  129  GLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVIVPLAA  188
            GLF+TW GLILPY+TFALPL IYT+ +FFREIPW+LEKAAKMDGATP QAFRKVIVPLA 
Sbjct  128  GLFNTWLGLILPYVTFALPLTIYTMQSFFREIPWELEKAAKMDGATPFQAFRKVIVPLAT  187

Query  189  PGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAAGAIVI  248
            PG+VTA++L FI  WND L A+SLT+T  A TAP AI+ FTG+SQFE P GSIAA A++I
Sbjct  188  PGVVTASVLAFIQVWNDFLFAISLTSTDNARTAPAAISFFTGASQFENPVGSIAAAAVII  247

Query  249  TIPIIVFVLIFQRRIVAGLTSGAVKG  274
            TIPI++FVLIFQRRIV+GLT+GAVKG
Sbjct  248  TIPIVIFVLIFQRRIVSGLTAGAVKG  273


>gi|300113097|ref|YP_003759672.1| binding-protein-dependent transport systems inner membrane component 
[Nitrosococcus watsonii C-113]
 gi|299539034|gb|ADJ27351.1| binding-protein-dependent transport systems inner membrane component 
[Nitrosococcus watsonii C-113]
Length=281

 Score =  342 bits (878),  Expect = 3e-92, Method: Compositional matrix adjust.
 Identities = 172/267 (65%), Positives = 215/267 (81%), Gaps = 0/267 (0%)

Query  8    YWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDLFSSALI  67
            +W     +V+ YAL+PV WI SLSLK  + + D +  P+TV+F++Y+ IF+   F +AL 
Sbjct  15   FWDSGSIIVMVYALIPVAWIISLSLKRGADLNDHRFFPATVSFEHYQAIFQDPQFPAALW  74

Query  68   NSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPLFNIERA  127
            NS+GIG I+T++AV+L   AAYA+ RLEFPGKRL++  AL + MFP I+++ PLFN+ R 
Sbjct  75   NSVGIGAISTLLAVLLAMFAAYAIVRLEFPGKRLILSGALAVAMFPPIAIMGPLFNLWRQ  134

Query  128  IGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRKVIVPLA  187
            IGLFDTW GLILPY+TF LPLAI+TLS FFREIPWDL+KAA++DGATP QAF KVIVPLA
Sbjct  135  IGLFDTWLGLILPYMTFTLPLAIWTLSTFFREIPWDLDKAARVDGATPFQAFCKVIVPLA  194

Query  188  APGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSIAAGAIV  247
            APG+ TAAILVFIFAWND L A+SLT+T  A T P AIA F G+S+FE PTGSIAA ++V
Sbjct  195  APGVFTAAILVFIFAWNDFLFAMSLTSTTQARTVPAAIAFFAGTSRFELPTGSIAAASVV  254

Query  248  ITIPIIVFVLIFQRRIVAGLTSGAVKG  274
            +T+PI+V VLIFQRRIVAGLT+GAVKG
Sbjct  255  VTLPIVVIVLIFQRRIVAGLTAGAVKG  281


>gi|288917511|ref|ZP_06411876.1| binding-protein-dependent transport systems inner membrane component 
[Frankia sp. EUN1f]
 gi|288351057|gb|EFC85269.1| binding-protein-dependent transport systems inner membrane component 
[Frankia sp. EUN1f]
Length=280

 Score =  337 bits (865),  Expect = 8e-91, Method: Compositional matrix adjust.
 Identities = 179/273 (66%), Positives = 220/273 (81%), Gaps = 0/273 (0%)

Query  2    GARRATYWAVLDTLVVGYALLPVLWIFSLSLKPTSTVKDGKLIPSTVTFDNYRGIFRGDL  61
            G R    W   +T+VV  +L+P+LW+ SLS K   ++ DG+L+P+  T  NYRGIF   L
Sbjct  8    GNRALLGWVTANTVVVVLSLVPLLWLVSLSFKTPESIGDGRLVPTDPTLANYRGIFTQSL  67

Query  62   FSSALINSIGIGLITTVIAVVLGAMAAYAVARLEFPGKRLLIGAALLITMFPSISLVTPL  121
            F+ AL+NS+GI LI+T++AV +G +AAYA+ARL FPG+R L+G ALLI MFP ISL++PL
Sbjct  68   FTRALVNSLGIALISTLLAVGIGGLAAYAIARLRFPGRRALVGLALLIAMFPQISLISPL  127

Query  122  FNIERAIGLFDTWPGLILPYITFALPLAIYTLSAFFREIPWDLEKAAKMDGATPGQAFRK  181
            FN+ R +G+FDTW GLI+PY+TF+LPLAIYTL+ FFREIP DLEKAA MDGATP Q F +
Sbjct  128  FNLWRQLGIFDTWIGLIVPYLTFSLPLAIYTLATFFREIPPDLEKAAAMDGATPAQTFVR  187

Query  182  VIVPLAAPGLVTAAILVFIFAWNDLLLALSLTATKAAITAPVAIANFTGSSQFEEPTGSI  241
            VI PLAAPG VT AILVFIF WND L A+SLT+T+++ TAP AIA FTG+SQF +P GSI
Sbjct  188  VIAPLAAPGTVTTAILVFIFCWNDFLFAISLTSTESSRTAPAAIAFFTGASQFAQPIGSI  247

Query  242  AAGAIVITIPIIVFVLIFQRRIVAGLTSGAVKG  274
            AA A+VITIPIIVFVL+FQRRIVAGLTSGAVKG
Sbjct  248  AAAAVVITIPIIVFVLLFQRRIVAGLTSGAVKG  280



Lambda     K      H
   0.327    0.141    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 429277556614


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40