BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1241 Length=86 Score E Sequences producing significant alignments: (Bits) Value gi|15840686|ref|NP_335723.1| hypothetical protein MT1279 [Mycoba... 170 7e-41 gi|254364141|ref|ZP_04980187.1| conserved hypothetical protein [... 169 1e-40 gi|15608381|ref|NP_215757.1| hypothetical protein Rv1241 [Mycoba... 169 2e-40 gi|240168913|ref|ZP_04747572.1| hypothetical protein MkanA1_0635... 128 2e-28 gi|298524743|ref|ZP_07012152.1| conserved hypothetical protein [... 122 2e-26 gi|88810688|ref|ZP_01125945.1| hypothetical protein NB231_16448 ... 59.7 1e-07 gi|294054234|ref|YP_003547892.1| hypothetical protein Caka_0698 ... 57.8 6e-07 gi|116748339|ref|YP_845026.1| hypothetical protein Sfum_0895 [Sy... 55.1 3e-06 gi|254551940|ref|ZP_05142387.1| antitoxin [Mycobacterium tubercu... 54.3 6e-06 gi|94265939|ref|ZP_01289665.1| conserved hypothetical protein [d... 53.9 7e-06 gi|15610008|ref|NP_217387.1| hypothetical protein Rv2871 [Mycoba... 53.9 7e-06 gi|320105316|ref|YP_004180906.1| hypothetical protein AciPR4_007... 48.9 2e-04 gi|308270135|emb|CBX26747.1| hypothetical protein N47_A07760 [un... 48.5 3e-04 gi|157382509|gb|ABV48745.1| Rv2871 [Mycobacterium kansasii ATCC ... 47.4 7e-04 gi|240171735|ref|ZP_04750394.1| hypothetical protein MkanA1_2064... 45.8 0.002 gi|322435686|ref|YP_004217898.1| hypothetical protein AciX9_2073... 44.7 0.005 gi|298529362|ref|ZP_07016765.1| conserved hypothetical protein [... 41.6 0.045 gi|312198437|ref|YP_004018498.1| hypothetical protein FraEuI1c_4... 39.3 0.19 gi|116624724|ref|YP_826880.1| hypothetical protein Acid_5648 [Ca... 38.1 0.41 gi|15610457|ref|NP_217838.1| hypothetical protein Rv3321c [Mycob... 38.1 0.42 gi|87123275|ref|ZP_01079126.1| hypothetical protein RS9917_05430... 37.0 0.97 gi|333990438|ref|YP_004523052.1| hypothetical protein JDM601_179... 36.6 1.2 gi|113954589|ref|YP_729373.1| hypothetical protein sync_0136 [Sy... 35.8 2.1 gi|340627507|ref|YP_004745959.1| hypothetical protein MCAN_25321... 35.8 2.2 gi|289448138|ref|ZP_06437882.1| antitoxin [Mycobacterium tubercu... 35.8 2.2 gi|15609630|ref|NP_217009.1| hypothetical protein Rv2493 [Mycoba... 35.8 2.3 gi|15609241|ref|NP_216620.1| hypothetical protein Rv2104c [Mycob... 35.0 3.3 gi|226365695|ref|YP_002783478.1| error-prone DNA polymerase [Rho... 34.7 5.0 gi|289745379|ref|ZP_06504757.1| conserved hypothetical protein [... 33.9 7.5 >gi|15840686|ref|NP_335723.1| hypothetical protein MT1279 [Mycobacterium tuberculosis CDC1551] gi|13880873|gb|AAK45537.1| hypothetical protein MT1279 [Mycobacterium tuberculosis CDC1551] Length=98 Score = 170 bits (430), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%) Query 1 MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAPPVKRQEQYRLEPHESAVRSG 60 MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAPPVKRQEQYRLEPHESAVRSG Sbjct 13 MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAPPVKRQEQYRLEPHESAVRSG 72 Query 61 LDLAGFNKLADELEDEALLDATRRAR 86 LDLAGFNKLADELEDEALLDATRRAR Sbjct 73 LDLAGFNKLADELEDEALLDATRRAR 98 >gi|254364141|ref|ZP_04980187.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|289554970|ref|ZP_06444180.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289744986|ref|ZP_06504364.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|134149655|gb|EBA41700.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|289439602|gb|EFD22095.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289685514|gb|EFD53002.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|328459460|gb|AEB04883.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 4207] Length=90 Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%) Query 1 MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAPPVKRQEQYRLEPHESAVRSG 60 MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAPPVKRQEQYRLEPHESAVRSG Sbjct 5 MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAPPVKRQEQYRLEPHESAVRSG 64 Query 61 LDLAGFNKLADELEDEALLDATRRAR 86 LDLAGFNKLADELEDEALLDATRRAR Sbjct 65 LDLAGFNKLADELEDEALLDATRRAR 90 >gi|15608381|ref|NP_215757.1| hypothetical protein Rv1241 [Mycobacterium tuberculosis H37Rv] gi|31792434|ref|NP_854927.1| hypothetical protein Mb1273 [Mycobacterium bovis AF2122/97] gi|121637170|ref|YP_977393.1| hypothetical protein BCG_1301 [Mycobacterium bovis BCG str. Pasteur 1173P2] 68 more sequence titles Length=86 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%) Query 1 MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAPPVKRQEQYRLEPHESAVRSG 60 MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAPPVKRQEQYRLEPHESAVRSG Sbjct 1 MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAPPVKRQEQYRLEPHESAVRSG 60 Query 61 LDLAGFNKLADELEDEALLDATRRAR 86 LDLAGFNKLADELEDEALLDATRRAR Sbjct 61 LDLAGFNKLADELEDEALLDATRRAR 86 >gi|240168913|ref|ZP_04747572.1| hypothetical protein MkanA1_06350 [Mycobacterium kansasii ATCC 12478] Length=93 Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 61/83 (74%), Positives = 73/83 (88%), Gaps = 0/83 (0%) Query 1 MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAPPVKRQEQYRLEPHESAVRSG 60 MRTTLTLDDDVVRL+E+AVHRERRPMK VINDALR+ALA P++R+ Y+L+PH SAVR G Sbjct 8 MRTTLTLDDDVVRLIEEAVHRERRPMKHVINDALRKALAQPMERRTPYQLKPHRSAVRPG 67 Query 61 LDLAGFNKLADELEDEALLDATR 83 D AGFN+LADE+ED+A+LD R Sbjct 68 FDFAGFNRLADEMEDQAILDQKR 90 >gi|298524743|ref|ZP_07012152.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|298494537|gb|EFI29831.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] Length=61 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 61/61 (100%), Positives = 61/61 (100%), Gaps = 0/61 (0%) Query 26 MKQVINDALRRALAPPVKRQEQYRLEPHESAVRSGLDLAGFNKLADELEDEALLDATRRA 85 MKQVINDALRRALAPPVKRQEQYRLEPHESAVRSGLDLAGFNKLADELEDEALLDATRRA Sbjct 1 MKQVINDALRRALAPPVKRQEQYRLEPHESAVRSGLDLAGFNKLADELEDEALLDATRRA 60 Query 86 R 86 R Sbjct 61 R 61 >gi|88810688|ref|ZP_01125945.1| hypothetical protein NB231_16448 [Nitrococcus mobilis Nb-231] gi|88792318|gb|EAR23428.1| hypothetical protein NB231_16448 [Nitrococcus mobilis Nb-231] Length=92 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/87 (38%), Positives = 47/87 (55%), Gaps = 2/87 (2%) Query 1 MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAPPVK--RQEQYRLEPHESAVR 58 MRTT+TL+ DV +++ HR R K+ +ND LR+ L K R E + ++PH R Sbjct 5 MRTTVTLEPDVAAKLKELAHRRRASFKETLNDVLRKGLTSQAKAGRSEPFVVKPHSGGFR 64 Query 59 SGLDLAGFNKLADELEDEALLDATRRA 85 G+D N+L D+LE E R A Sbjct 65 PGIDPDKLNQLLDQLEVEDFSGEARSA 91 >gi|294054234|ref|YP_003547892.1| hypothetical protein Caka_0698 [Coraliomargarita akajimensis DSM 45221] gi|293613567|gb|ADE53722.1| conserved hypothetical protein [Coraliomargarita akajimensis DSM 45221] Length=84 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 26/76 (35%), Positives = 46/76 (61%), Gaps = 0/76 (0%) Query 1 MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAPPVKRQEQYRLEPHESAVRSG 60 MRTT+ + D ++ +++ H E+RPM +V+ND L + LA P K+ ++ RL+ + +R Sbjct 1 MRTTIDIKDAILDALKERAHLEKRPMTKVVNDVLEKGLAAPTKQTKKVRLKTYGLGIRPA 60 Query 61 LDLAGFNKLADELEDE 76 N++ D+LE E Sbjct 61 FRGMSLNQVYDQLETE 76 >gi|116748339|ref|YP_845026.1| hypothetical protein Sfum_0895 [Syntrophobacter fumaroxidans MPOB] gi|116697403|gb|ABK16591.1| conserved hypothetical protein [Syntrophobacter fumaroxidans MPOB] Length=88 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/82 (44%), Positives = 49/82 (60%), Gaps = 6/82 (7%) Query 1 MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRR---ALAPPVKRQEQYRLEPHE-SA 56 MRTTLT+DD++ ++D HR + +QV+NDALR+ AL P R YRL P Sbjct 1 MRTTLTIDDEIAVSLKDLAHRSGKSFRQVVNDALRKGAHALENPEAR--PYRLSPTSLGL 58 Query 57 VRSGLDLAGFNKLADELEDEAL 78 +RS ++L LADE ED A+ Sbjct 59 LRSNINLDKALNLADEREDAAI 80 >gi|254551940|ref|ZP_05142387.1| antitoxin [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] Length=85 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 31/85 (37%), Positives = 50/85 (59%), Gaps = 2/85 (2%) Query 1 MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAPPVKRQE-QYRLEPH-ESAVR 58 MRTT+ +DD++ R V+ R R + V+ DA+RR L PP + +YR++P + +R Sbjct 1 MRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGMR 60 Query 59 SGLDLAGFNKLADELEDEALLDATR 83 G+DL+ LA+ + D +DA R Sbjct 61 PGVDLSSNAALAEAMNDGVSVDAVR 85 >gi|94265939|ref|ZP_01289665.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93453525|gb|EAT03933.1| conserved hypothetical protein [delta proteobacterium MLMS-1] Length=94 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 33/84 (40%), Positives = 50/84 (60%), Gaps = 8/84 (9%) Query 1 MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALA----PPVKRQEQYRLEPHE-S 55 MRTTLT+DD + + +A +R +P KQ++N+ALR+ L PP + YR++ Sbjct 7 MRTTLTIDDQLSVELREAANRSGKPFKQIVNEALRKGLNALEHPPGR---PYRIKSSSLG 63 Query 56 AVRSGLDLAGFNKLADELEDEALL 79 VR G++L LAD LED A++ Sbjct 64 KVRPGINLDKALGLADGLEDSAIM 87 >gi|15610008|ref|NP_217387.1| hypothetical protein Rv2871 [Mycobacterium tuberculosis H37Rv] gi|31794048|ref|NP_856541.1| hypothetical protein Mb2896 [Mycobacterium bovis AF2122/97] gi|121638753|ref|YP_978977.1| hypothetical protein BCG_2893 [Mycobacterium bovis BCG str. Pasteur 1173P2] 73 more sequence titles Length=85 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 31/85 (37%), Positives = 50/85 (59%), Gaps = 2/85 (2%) Query 1 MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAPPVKRQE-QYRLEPH-ESAVR 58 MRTT+ +DD++ R V+ R R + V+ DA+RR L PP + +YR++P + +R Sbjct 1 MRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLR 60 Query 59 SGLDLAGFNKLADELEDEALLDATR 83 G+DL+ LA+ + D +DA R Sbjct 61 PGVDLSSNAALAEAMNDGVSVDAVR 85 >gi|320105316|ref|YP_004180906.1| hypothetical protein AciPR4_0071 [Terriglobus saanensis SP1PR4] gi|319923837|gb|ADV80912.1| hypothetical protein AciPR4_0071 [Terriglobus saanensis SP1PR4] Length=80 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/80 (38%), Positives = 46/80 (58%), Gaps = 5/80 (6%) Query 1 MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAPPVKRQE---QYRLEPHESAV 57 MRTTLT+DDDV L++ + R PMKQ IN LR ALA VK E +++++ + + Sbjct 1 MRTTLTIDDDVAALLKREMRRSGEPMKQAINRCLRTALA--VKSTEPAPKFKVQSRKLGL 58 Query 58 RSGLDLAGFNKLADELEDEA 77 G+ + D+L+ E+ Sbjct 59 LPGMSYDNLEAVLDQLDRES 78 >gi|308270135|emb|CBX26747.1| hypothetical protein N47_A07760 [uncultured Desulfobacterium sp.] Length=81 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/79 (36%), Positives = 45/79 (57%), Gaps = 4/79 (5%) Query 1 MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRAL---APPVKRQEQYRLEPHESAV 57 MRTT+T+D+DV+ + R P K VIN+ALR L P K + +Y+ +PH V Sbjct 1 MRTTITIDNDVLERARAISAKLRTPFKTVINEALRTGLDHVQQPAKCR-RYKTKPHAMGV 59 Query 58 RSGLDLAGFNKLADELEDE 76 ++G ++ +L ++E E Sbjct 60 KAGRNIDNIQELLAQIEGE 78 >gi|157382509|gb|ABV48745.1| Rv2871 [Mycobacterium kansasii ATCC 12478] Length=85 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 29/85 (35%), Positives = 50/85 (59%), Gaps = 2/85 (2%) Query 1 MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAPPVKRQE-QYRLEPHES-AVR 58 MRTT+ +DD++ R V+ R R + V+ DA+R L PP + +YR++P S +R Sbjct 1 MRTTIRIDDELYREVKARAARSGRTVAAVLEDAVRCGLNPPGQSAAGRYRVQPIGSGGLR 60 Query 59 SGLDLAGFNKLADELEDEALLDATR 83 G+DL+ +A+ +++ +DA R Sbjct 61 PGVDLSSNAAVAEAMDEGVPVDALR 85 >gi|240171735|ref|ZP_04750394.1| hypothetical protein MkanA1_20645 [Mycobacterium kansasii ATCC 12478] Length=86 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/85 (33%), Positives = 50/85 (59%), Gaps = 2/85 (2%) Query 1 MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAPPVKRQE-QYRLEPHES-AVR 58 +RTT+ +DD++ R V+ R R + V+ DA+R L PP + +YR++P S +R Sbjct 2 VRTTIRIDDELYREVKARAARSGRTVAAVLEDAVRCGLNPPGQSAAGRYRVQPIGSGGLR 61 Query 59 SGLDLAGFNKLADELEDEALLDATR 83 G+DL+ +A+ +++ +DA R Sbjct 62 PGVDLSSNAAVAEAMDEGVPVDALR 86 >gi|322435686|ref|YP_004217898.1| hypothetical protein AciX9_2073 [Acidobacterium sp. MP5ACTX9] gi|321163413|gb|ADW69118.1| hypothetical protein AciX9_2073 [Acidobacterium sp. MP5ACTX9] Length=81 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/74 (34%), Positives = 42/74 (57%), Gaps = 4/74 (5%) Query 1 MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRAL---APPVKRQEQYRLEPHESAV 57 MRTTLT+DDDV L++ + R P+KQ +N LR L A P+K + +++ P ++++ Sbjct 1 MRTTLTIDDDVAALLQKELRRSGEPLKQAVNRLLRAGLYQAATPMKSKP-FKVRPFDASL 59 Query 58 RSGLDLAGFNKLAD 71 + +L D Sbjct 60 PTEWTSGSIQQLLD 73 >gi|298529362|ref|ZP_07016765.1| conserved hypothetical protein [Desulfonatronospira thiodismutans ASO3-1] gi|298510798|gb|EFI34701.1| conserved hypothetical protein [Desulfonatronospira thiodismutans ASO3-1] Length=81 Score = 41.6 bits (96), Expect = 0.045, Method: Compositional matrix adjust. Identities = 27/78 (35%), Positives = 39/78 (50%), Gaps = 2/78 (2%) Query 1 MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAPPVK--RQEQYRLEPHESAVR 58 MRTTL +D+DV+ R + P K VIN+ALR L K Q+ Y P ++ Sbjct 1 MRTTLAIDNDVLEKARALAARRKIPFKTVINEALRAGLREVEKPALQQDYTTMPQPMGLK 60 Query 59 SGLDLAGFNKLADELEDE 76 G +L +L ++E E Sbjct 61 QGRNLDNIQELLAQVEGE 78 >gi|312198437|ref|YP_004018498.1| hypothetical protein FraEuI1c_4635 [Frankia sp. EuI1c] gi|311229773|gb|ADP82628.1| hypothetical protein FraEuI1c_4635 [Frankia sp. EuI1c] Length=63 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 19/43 (45%), Positives = 27/43 (63%), Gaps = 1/43 (2%) Query 44 RQEQ-YRLEPHESAVRSGLDLAGFNKLADELEDEALLDATRRA 85 RQE YRL PHES + G ++ N+LA E E++ ++D RA Sbjct 15 RQEGPYRLVPHESGLGPGFEVTSLNRLAGEFEEDEIIDRLHRA 57 >gi|116624724|ref|YP_826880.1| hypothetical protein Acid_5648 [Candidatus Solibacter usitatus Ellin6076] gi|116227886|gb|ABJ86595.1| conserved hypothetical protein [Candidatus Solibacter usitatus Ellin6076] Length=87 Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust. Identities = 29/85 (35%), Positives = 43/85 (51%), Gaps = 11/85 (12%) Query 1 MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAPPVKR------QEQYRLEPHE 54 MRTT+TLD DV R ++ + KQ +NDA+R L P + Q+ Y L + Sbjct 1 MRTTVTLDPDVERALKATMRTRGVSFKQALNDAIRTGLLKPGSKTRRRFVQKTYSLGAEQ 60 Query 55 SAVRSGLDLAGFNKLADELEDEALL 79 + R LA +AD +EDE ++ Sbjct 61 N-FRWEKALA----IADAIEDEEII 80 >gi|15610457|ref|NP_217838.1| hypothetical protein Rv3321c [Mycobacterium tuberculosis H37Rv] gi|15842913|ref|NP_337950.1| CopG family DNA-binding protein [Mycobacterium tuberculosis CDC1551] gi|31794502|ref|NP_856995.1| hypothetical protein Mb3350c [Mycobacterium bovis AF2122/97] 77 more sequence titles Length=80 Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust. Identities = 29/84 (35%), Positives = 41/84 (49%), Gaps = 15/84 (17%) Query 1 MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALA----PPVKRQE----QYRLEP 52 MRTTL++DDDV+ V++ RE+R ++++D R+AL P QE + P Sbjct 1 MRTTLSIDDDVLLAVKERARREKRTAGEILSDLARQALTNQNPQPAASQEDAFHGFEPLP 60 Query 53 HESAVRSGLDLAGFNKLADELEDE 76 H S N L D L DE Sbjct 61 HRGGAVS-------NALIDRLRDE 77 >gi|87123275|ref|ZP_01079126.1| hypothetical protein RS9917_05430 [Synechococcus sp. RS9917] gi|86168995|gb|EAQ70251.1| hypothetical protein RS9917_05430 [Synechococcus sp. RS9917] Length=82 Score = 37.0 bits (84), Expect = 0.97, Method: Compositional matrix adjust. Identities = 26/82 (32%), Positives = 42/82 (52%), Gaps = 4/82 (4%) Query 1 MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAPPVKRQEQYRLEPHESAVRSG 60 MRTTL +DDD+++ +D ++R QV++ LR+AL + PH R Sbjct 1 MRTTLDIDDDLLQAAKDLAKQQRMSAGQVVSTLLRQALTQAHHSPSEAAARPHPCGFRP- 59 Query 61 LDLAG-FNKLADELEDEALLDA 81 AG +++ + + EAL DA Sbjct 60 --FAGDPSRITNNADVEALRDA 79 >gi|333990438|ref|YP_004523052.1| hypothetical protein JDM601_1798 [Mycobacterium sp. JDM601] gi|333486406|gb|AEF35798.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=83 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 32/85 (38%), Positives = 46/85 (55%), Gaps = 3/85 (3%) Query 1 MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAPPVKRQEQYRLEPHESAVRSG 60 MRTT+TLDDDV +L+ + + KQ +N+A+R A Q Q R + V S Sbjct 1 MRTTVTLDDDVEQLIRRRMAERQLSFKQALNEAIRDGSAGRATPQFQTR--TADLGVPS- 57 Query 61 LDLAGFNKLADELEDEALLDATRRA 85 ++L +LA +LEDE L+ RR Sbjct 58 VNLDRALQLAADLEDEELIRRQRRG 82 >gi|113954589|ref|YP_729373.1| hypothetical protein sync_0136 [Synechococcus sp. CC9311] gi|113881940|gb|ABI46898.1| conserved hypothetical protein [Synechococcus sp. CC9311] Length=81 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 28/79 (36%), Positives = 36/79 (46%), Gaps = 7/79 (8%) Query 1 MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAPPVKRQEQYRLEPHES----- 55 MRTTL LDDDV+ + RR + VI+D R+ L+ P Q LE Sbjct 1 MRTTLRLDDDVLAAARVLARQRRRSVGDVISDLARQTLSRPADGGSQNVLEQRSGLPQLP 60 Query 56 --AVRSGLDLAGFNKLADE 72 A +DL N+L DE Sbjct 61 VKASGGAVDLELVNQLRDE 79 >gi|340627507|ref|YP_004745959.1| hypothetical protein MCAN_25321 [Mycobacterium canettii CIPT 140010059] gi|340005697|emb|CCC44863.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059] Length=73 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 0/40 (0%) Query 1 MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAP 40 MRTTL LDDDV+ + +RR + VI++ RR L P Sbjct 1 MRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMP 40 >gi|289448138|ref|ZP_06437882.1| antitoxin [Mycobacterium tuberculosis CPHL_A] gi|289421096|gb|EFD18297.1| antitoxin [Mycobacterium tuberculosis CPHL_A] Length=73 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 0/40 (0%) Query 1 MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAP 40 MRTTL LDDDV+ + +RR + VI++ RR L P Sbjct 1 MRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMP 40 >gi|15609630|ref|NP_217009.1| hypothetical protein Rv2493 [Mycobacterium tuberculosis H37Rv] gi|15842021|ref|NP_337058.1| hypothetical protein MT2568 [Mycobacterium tuberculosis CDC1551] gi|31793673|ref|NP_856166.1| hypothetical protein Mb2521 [Mycobacterium bovis AF2122/97] 65 more sequence titles Length=73 Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 0/40 (0%) Query 1 MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAP 40 MRTTL LDDDV+ + +RR + VI++ RR L P Sbjct 1 MRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGLMP 40 >gi|15609241|ref|NP_216620.1| hypothetical protein Rv2104c [Mycobacterium tuberculosis H37Rv] gi|15841595|ref|NP_336632.1| hypothetical protein MT2164 [Mycobacterium tuberculosis CDC1551] gi|31793286|ref|NP_855779.1| hypothetical protein Mb2130c [Mycobacterium bovis AF2122/97] 73 more sequence titles Length=84 Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust. Identities = 31/91 (35%), Positives = 45/91 (50%), Gaps = 14/91 (15%) Query 1 MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAPPVKRQEQYRLEPHESAVRSG 60 MRTT+TLDDDV +LV + + K+ +NDA+R + R P + R+ Sbjct 1 MRTTVTLDDDVEQLVRRRMAERQVSFKKALNDAIRDGASG--------RPAPSHFSTRTA 52 Query 61 -LDLAGFN-----KLADELEDEALLDATRRA 85 L + N +LA +LEDE L+ RR Sbjct 53 DLGVPAVNLDRALQLAADLEDEELVRRQRRG 83 >gi|226365695|ref|YP_002783478.1| error-prone DNA polymerase [Rhodococcus opacus B4] gi|226244185|dbj|BAH54533.1| error-prone DNA polymerase [Rhodococcus opacus B4] Length=1084 Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust. Identities = 16/47 (35%), Positives = 23/47 (49%), Gaps = 0/47 (0%) Query 20 HRERRPMKQVINDALRRALAPPVKRQEQYRLEPHESAVRSGLDLAGF 66 H E ++Q+ D RR P R E YR HE + +GL+ G+ Sbjct 337 HTEASWLRQLTMDGARRRYGAPADRPEAYRQIEHELGIITGLNFPGY 383 >gi|289745379|ref|ZP_06504757.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289685907|gb|EFD53395.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] Length=84 Score = 33.9 bits (76), Expect = 7.5, Method: Compositional matrix adjust. Identities = 30/91 (33%), Positives = 45/91 (50%), Gaps = 14/91 (15%) Query 1 MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAPPVKRQEQYRLEPHESAVRSG 60 MRTT++LDDDV +LV + + K+ +NDA+R + R P + R+ Sbjct 1 MRTTVSLDDDVEQLVRRRMAERQVSFKKALNDAIRDGASG--------RPAPSHFSTRTA 52 Query 61 -LDLAGFN-----KLADELEDEALLDATRRA 85 L + N +LA +LEDE L+ RR Sbjct 53 DLGVPAVNLDRALQLAADLEDEELVRRQRRG 83 Lambda K H 0.319 0.134 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 131009627400 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40