BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1242
Length=143
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608382|ref|NP_215758.1| hypothetical protein Rv1242 [Mycoba... 286 5e-76
gi|289573902|ref|ZP_06454129.1| toxin [Mycobacterium tuberculosi... 285 2e-75
gi|167967876|ref|ZP_02550153.1| hypothetical protein MtubH3_0751... 246 1e-63
gi|240168912|ref|ZP_04747571.1| hypothetical protein MkanA1_0634... 224 5e-57
gi|254550248|ref|ZP_05140695.1| toxin [Mycobacterium tuberculosi... 155 2e-36
gi|88810689|ref|ZP_01125946.1| hypothetical protein NB231_16453 ... 132 1e-29
gi|116748338|ref|YP_845025.1| PilT domain-containing protein [Sy... 120 6e-26
gi|297623633|ref|YP_003705067.1| PIN domain-containing protein [... 112 2e-23
gi|116624725|ref|YP_826881.1| PilT domain-containing protein [Ca... 111 4e-23
gi|308270136|emb|CBX26748.1| hypothetical protein N47_A07770 [un... 107 6e-22
gi|333991903|ref|YP_004524517.1| PIN domain-containing protein f... 102 2e-20
gi|340627115|ref|YP_004745567.1| hypothetical protein MCAN_21291... 99.8 1e-19
gi|229822546|ref|YP_002884072.1| PIN domain-containing protein f... 99.4 2e-19
gi|294054235|ref|YP_003547893.1| PIN domain-containing protein f... 99.0 2e-19
gi|289758220|ref|ZP_06517598.1| conserved hypothetical protein [... 99.0 2e-19
gi|15841594|ref|NP_336631.1| hypothetical protein MT2163 [Mycoba... 98.6 3e-19
gi|307084750|ref|ZP_07493863.1| toxin [Mycobacterium tuberculosi... 98.6 3e-19
gi|15609240|ref|NP_216619.1| hypothetical protein Rv2103c [Mycob... 98.2 3e-19
gi|240170675|ref|ZP_04749334.1| PIN domain protein family protei... 93.2 1e-17
gi|297623624|ref|YP_003705058.1| PIN domain-containing protein [... 93.2 1e-17
gi|289750699|ref|ZP_06510077.1| conserved hypothetical protein [... 92.4 2e-17
gi|145221522|ref|YP_001132200.1| PilT domain-containing protein ... 92.0 2e-17
gi|333990439|ref|YP_004523053.1| hypothetical protein JDM601_179... 87.0 8e-16
gi|300780204|ref|ZP_07090060.1| PilT domain protein [Corynebacte... 86.3 1e-15
gi|320105317|ref|YP_004180907.1| PIN domain-containing protein f... 82.4 2e-14
gi|296130776|ref|YP_003638026.1| PIN domain protein family prote... 77.4 6e-13
gi|297567544|ref|YP_003686516.1| PIN domain-containing protein f... 77.4 7e-13
gi|306774366|ref|ZP_07412703.1| toxin [Mycobacterium tuberculosi... 75.5 2e-12
gi|253797202|ref|YP_003030203.1| toxin [Mycobacterium tuberculos... 74.3 5e-12
gi|15607418|ref|NP_214791.1| hypothetical protein Rv0277c [Mycob... 73.9 7e-12
gi|340625313|ref|YP_004743765.1| hypothetical protein MCAN_02841... 73.6 1e-11
gi|88811999|ref|ZP_01127252.1| hypothetical protein NB231_06401 ... 72.8 1e-11
gi|15607889|ref|NP_215263.1| hypothetical protein Rv0749 [Mycoba... 70.9 5e-11
gi|121636671|ref|YP_976894.1| hypothetical protein BCG_0799 [Myc... 70.9 6e-11
gi|340625767|ref|YP_004744219.1| hypothetical protein MCAN_07521... 69.3 2e-10
gi|258593476|emb|CBE69815.1| conserved protein of unknown functi... 69.3 2e-10
gi|322435687|ref|YP_004217899.1| PIN domain protein family prote... 68.2 4e-10
gi|258593480|emb|CBE69819.1| Conserved membrane protein [NC10 ba... 66.6 1e-09
gi|289744472|ref|ZP_06503850.1| conserved hypothetical protein [... 65.9 2e-09
gi|340627865|ref|YP_004746317.1| hypothetical protein MCAN_28941... 65.9 2e-09
gi|121638754|ref|YP_978978.1| hypothetical protein BCG_2894 [Myc... 65.9 2e-09
gi|15610009|ref|NP_217388.1| hypothetical protein Rv2872 [Mycoba... 65.5 2e-09
gi|289756836|ref|ZP_06516214.1| conserved hypothetical protein [... 63.9 7e-09
gi|313835966|gb|EFS73680.1| toxin-antitoxin system, toxin compon... 62.8 2e-08
gi|302542963|ref|ZP_07295305.1| putative toxin-antitoxin system,... 59.7 1e-07
gi|240171734|ref|ZP_04750393.1| hypothetical protein MkanA1_2064... 53.5 1e-05
gi|340628670|ref|YP_004747122.1| hypothetical protein MCAN_37181... 51.6 4e-05
gi|15610833|ref|NP_218214.1| hypothetical protein Rv3697c [Mycob... 51.6 4e-05
gi|258593410|emb|CBE69749.1| conserved protein of unknown functi... 50.4 9e-05
gi|160898241|ref|YP_001563823.1| PilT domain-containing protein ... 50.1 1e-04
>gi|15608382|ref|NP_215758.1| hypothetical protein Rv1242 [Mycobacterium tuberculosis H37Rv]
gi|15840687|ref|NP_335724.1| hypothetical protein MT1280 [Mycobacterium tuberculosis CDC1551]
gi|31792435|ref|NP_854928.1| hypothetical protein Mb1274 [Mycobacterium bovis AF2122/97]
79 more sequence titles
Length=143
Score = 286 bits (733), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 142/143 (99%), Positives = 143/143 (100%), Gaps = 0/143 (0%)
Query 1 VIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP 60
+IIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP
Sbjct 1 MIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP 60
Query 61 LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDA 120
LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDA
Sbjct 61 LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDA 120
Query 121 EIHSSDTDFARFADLKWTDPLRE 143
EIHSSDTDFARFADLKWTDPLRE
Sbjct 121 EIHSSDTDFARFADLKWTDPLRE 143
>gi|289573902|ref|ZP_06454129.1| toxin [Mycobacterium tuberculosis K85]
gi|289538333|gb|EFD42911.1| toxin [Mycobacterium tuberculosis K85]
Length=143
Score = 285 bits (728), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 141/143 (99%), Positives = 142/143 (99%), Gaps = 0/143 (0%)
Query 1 VIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP 60
+IIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP
Sbjct 1 MIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP 60
Query 61 LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDA 120
LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASH TTDVQLAAYGIEYDA
Sbjct 61 LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHRTTDVQLAAYGIEYDA 120
Query 121 EIHSSDTDFARFADLKWTDPLRE 143
EIHSSDTDFARFADLKWTDPLRE
Sbjct 121 EIHSSDTDFARFADLKWTDPLRE 143
>gi|167967876|ref|ZP_02550153.1| hypothetical protein MtubH3_07513 [Mycobacterium tuberculosis
H37Ra]
Length=123
Score = 246 bits (627), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 122/123 (99%), Positives = 123/123 (100%), Gaps = 0/123 (0%)
Query 1 VIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP 60
+IIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP
Sbjct 1 MIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP 60
Query 61 LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDA 120
LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDA
Sbjct 61 LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDA 120
Query 121 EIH 123
EIH
Sbjct 121 EIH 123
>gi|240168912|ref|ZP_04747571.1| hypothetical protein MkanA1_06345 [Mycobacterium kansasii ATCC
12478]
Length=143
Score = 224 bits (570), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 105/141 (75%), Positives = 123/141 (88%), Gaps = 0/141 (0%)
Query 1 VIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP 60
+IIPD+NLLLYAVITGFPQHRRA+AWW DTVN RIGLTYPA+FGFLRI T+AR+L P
Sbjct 1 MIIPDVNLLLYAVITGFPQHRRAYAWWHDTVNSQERIGLTYPAVFGFLRIVTNARILTEP 60
Query 61 LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDA 120
L +A+AYVR+WL+QPNVDLL RHLD+ALGLL++LGTAS+LTTDVQLAAY IE++A
Sbjct 61 LSATEAVAYVRDWLTQPNVDLLIPSARHLDLALGLLEQLGTASNLTTDVQLAAYAIEHNA 120
Query 121 EIHSSDTDFARFADLKWTDPL 141
E+HSSD DFARFA L WT+PL
Sbjct 121 EMHSSDADFARFAGLAWTNPL 141
>gi|254550248|ref|ZP_05140695.1| toxin [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
Length=89
Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/76 (100%), Positives = 76/76 (100%), Gaps = 0/76 (0%)
Query 68 AYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEIHSSDT 127
AYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEIHSSDT
Sbjct 14 AYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEIHSSDT 73
Query 128 DFARFADLKWTDPLRE 143
DFARFADLKWTDPLRE
Sbjct 74 DFARFADLKWTDPLRE 89
>gi|88810689|ref|ZP_01125946.1| hypothetical protein NB231_16453 [Nitrococcus mobilis Nb-231]
gi|88792319|gb|EAR23429.1| hypothetical protein NB231_16453 [Nitrococcus mobilis Nb-231]
Length=144
Score = 132 bits (332), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/142 (46%), Positives = 88/142 (62%), Gaps = 0/142 (0%)
Query 1 VIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP 60
+I+PD+NLL+YA T P H A AWW+ ++ +GL + + GF+R+ T VL P
Sbjct 1 MIVPDVNLLIYAYNTDAPHHSDAKAWWEGLLSSEEPVGLPWASALGFIRLMTHRAVLVMP 60
Query 61 LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDA 120
+ + A+ YVR W S+ NV L GPRHL++ GL LGTA LTTD LAA IE+
Sbjct 61 VEPSRAVEYVRSWHSRSNVSALEPGPRHLELLDGLFAALGTAGKLTTDTHLAALAIEHQC 120
Query 121 EIHSSDTDFARFADLKWTDPLR 142
+ S+D DFARF L+W +PL+
Sbjct 121 VLCSNDGDFARFPGLRWRNPLK 142
>gi|116748338|ref|YP_845025.1| PilT domain-containing protein [Syntrophobacter fumaroxidans
MPOB]
gi|116697402|gb|ABK16590.1| PIN domain family protein [Syntrophobacter fumaroxidans MPOB]
Length=144
Score = 120 bits (301), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 61/141 (44%), Positives = 83/141 (59%), Gaps = 0/141 (0%)
Query 1 VIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP 60
+I+ D+NLLLYAV PQH R+ W + ++G +GL + + FLRI T+AR+ P
Sbjct 1 MILVDVNLLLYAVNQDLPQHARSRTWLETVLSGSESVGLPWVVIRAFLRITTNARIFERP 60
Query 61 LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDA 120
L A+AYV EWL+QP +T G H I LL GT +LTTD +AA IEY
Sbjct 61 LSVERAVAYVEEWLAQPVATTVTPGKSHWMILRNLLLDSGTGGNLTTDAHIAALAIEYGH 120
Query 121 EIHSSDTDFARFADLKWTDPL 141
++S+D DF RF L+ +PL
Sbjct 121 TVYSTDNDFKRFQGLRHINPL 141
>gi|297623633|ref|YP_003705067.1| PIN domain-containing protein [Truepera radiovictrix DSM 17093]
gi|297164813|gb|ADI14524.1| PIN domain protein family protein [Truepera radiovictrix DSM
17093]
Length=145
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/143 (42%), Positives = 83/143 (59%), Gaps = 0/143 (0%)
Query 1 VIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP 60
+I+ D NLL+YA + G PQH AHAW ++ R+GL +P+L FLR+ T+ RV P
Sbjct 1 MILIDANLLIYAHVMGSPQHHAAHAWLDAQLSAGYRVGLPWPSLLAFLRLTTNPRVFERP 60
Query 61 LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDA 120
L A+A A V WLS P+V L T H + L+ + G ++L D LAA +E+
Sbjct 61 LTAAEAWAQVEAWLSVPSVWLPTPTAEHPKLLRDLVTQTGATANLIPDAHLAALALEHGL 120
Query 121 EIHSSDTDFARFADLKWTDPLRE 143
+ S+D DF RF LKW +PL E
Sbjct 121 TLCSTDGDFGRFPRLKWRNPLAE 143
>gi|116624725|ref|YP_826881.1| PilT domain-containing protein [Candidatus Solibacter usitatus
Ellin6076]
gi|116227887|gb|ABJ86596.1| PIN domain family protein [Candidatus Solibacter usitatus Ellin6076]
Length=142
Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/138 (40%), Positives = 81/138 (59%), Gaps = 0/138 (0%)
Query 5 DINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAPLPTA 64
D N+LLYAV P H+ A W + T++G +G ++ + FLR+ T + PL
Sbjct 5 DANILLYAVNKDAPLHQSARQWLEKTLSGDEPLGFSWNVILAFLRLTTRPGLFRKPLSPD 64
Query 65 DAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEIHS 124
A V WL++P ++ AGPRHL+I L+ LGTA +LT+D L A IE +A++ S
Sbjct 65 QAFDLVASWLAEPAAIIVHAGPRHLEIVHRLIKPLGTAGNLTSDAHLGALAIEQNAQLCS 124
Query 125 SDTDFARFADLKWTDPLR 142
D+DFARF+ + W +PL
Sbjct 125 CDSDFARFSGVDWLNPLE 142
>gi|308270136|emb|CBX26748.1| hypothetical protein N47_A07770 [uncultured Desulfobacterium
sp.]
Length=143
Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 52/141 (37%), Positives = 80/141 (57%), Gaps = 0/141 (0%)
Query 1 VIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP 60
+I+ D N+LLYA + P H++A WW D ++ + L +P L F+RI T+ RV P
Sbjct 1 MILVDANILLYAEDSLSPLHQQARLWWDDQLSKSEPVCLCWPVLSAFIRIGTNPRVFEHP 60
Query 61 LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDA 120
LP A+ V+ WL QP ++ +H + + +L ++L TD LAA IE
Sbjct 61 LPLEQALTRVQSWLDQPCTRVIQPTEQHWAVFMMMLKGGQAVANLVTDAHLAALAIENGC 120
Query 121 EIHSSDTDFARFADLKWTDPL 141
++ S+D+DF+RF LKW +PL
Sbjct 121 DLASTDSDFSRFPKLKWINPL 141
>gi|333991903|ref|YP_004524517.1| PIN domain-containing protein family protein [Mycobacterium sp.
JDM601]
gi|333487871|gb|AEF37263.1| PIN domain protein family protein [Mycobacterium sp. JDM601]
Length=143
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/137 (42%), Positives = 79/137 (58%), Gaps = 0/137 (0%)
Query 5 DINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAPLPTA 64
D NLLLYAV + A AW ++T+NG RIGL + + FLRI T RV PLP +
Sbjct 4 DANLLLYAVDADSKHNPVAAAWLEETLNGDNRIGLPWQTIGAFLRIITHPRVTENPLPPS 63
Query 65 DAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEIHS 124
+A +YV +WL+ P V + A + G+ + A +L D QLAA IE+ E+ S
Sbjct 64 EAWSYVADWLAVPVVWIPPATEATARVYAGICAQADVAGNLVPDAQLAALAIEHGVELAS 123
Query 125 SDTDFARFADLKWTDPL 141
+D+DF RF L+W +PL
Sbjct 124 ADSDFQRFPGLRWFNPL 140
>gi|340627115|ref|YP_004745567.1| hypothetical protein MCAN_21291 [Mycobacterium canettii CIPT
140010059]
gi|340005305|emb|CCC44461.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=144
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/138 (39%), Positives = 76/138 (56%), Gaps = 0/138 (0%)
Query 3 IPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAPLP 62
I D N+LLYAV T H+ + W ++G R+G + L F+R+AT + PLP
Sbjct 3 IVDANVLLYAVNTTSEHHKPSLRWLDGALSGADRVGFAWVPLLSFVRLATKVGLFPRPLP 62
Query 63 TADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEI 122
AI V +WL+ P+ L+ RH DI +L +GT ++L D LAA +E+ A I
Sbjct 63 REAAITQVADWLAAPSAVLVNPTVRHADILARMLTYVGTGANLVNDAHLAALAVEHRASI 122
Query 123 HSSDTDFARFADLKWTDP 140
S D+DF RFA ++W P
Sbjct 123 VSYDSDFGRFAGVRWDQP 140
>gi|229822546|ref|YP_002884072.1| PIN domain-containing protein family protein [Beutenbergia cavernae
DSM 12333]
gi|229568459|gb|ACQ82310.1| PIN domain protein family protein [Beutenbergia cavernae DSM
12333]
Length=143
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/139 (42%), Positives = 76/139 (55%), Gaps = 0/139 (0%)
Query 2 IIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAPL 61
+I D N+LLYAV TG P HR A W ++ ++G R+GL +P+L F RIA+ R A PL
Sbjct 1 MIVDANVLLYAVDTGSPFHRAAKEWLEEALSGPARVGLPWPSLLAFQRIASHPRAAAQPL 60
Query 62 PTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAE 121
A A++ EWL + T G H I LL +L TD LAA +E+
Sbjct 61 TPGAAWAFITEWLRADPAWIPTPGDGHAAILGRLLTAGDLRGNLVTDAHLAALALEHGVG 120
Query 122 IHSSDTDFARFADLKWTDP 140
I S D+DFARF L W +P
Sbjct 121 ICSFDSDFARFDGLTWHNP 139
>gi|294054235|ref|YP_003547893.1| PIN domain-containing protein family protein [Coraliomargarita
akajimensis DSM 45221]
gi|293613568|gb|ADE53723.1| PIN domain protein family protein [Coraliomargarita akajimensis
DSM 45221]
Length=142
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/142 (36%), Positives = 74/142 (53%), Gaps = 0/142 (0%)
Query 1 VIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP 60
+I+PD NLL+YA H A WW+ ++G IG+ + + F RI T ++ AP
Sbjct 1 MILPDANLLIYAHDHSSRDHATAKDWWETALSGSESIGIPWIVVLAFTRILTHPQICEAP 60
Query 61 LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDA 120
L V +W P V L+ R L + LL+ G +L+TD +AA+ E+ A
Sbjct 61 LGVTQVRELVEQWFDSPQVRLIQTSNRALPVFFDLLEDAGMGGNLSTDALIAAHAREHSA 120
Query 121 EIHSSDTDFARFADLKWTDPLR 142
I+S D DF RF ++W +PLR
Sbjct 121 VIYSCDRDFDRFMGIRWVNPLR 142
>gi|289758220|ref|ZP_06517598.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|294997046|ref|ZP_06802737.1| hypothetical protein Mtub2_21708 [Mycobacterium tuberculosis
210]
gi|289713784|gb|EFD77796.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|326903715|gb|EGE50648.1| toxin [Mycobacterium tuberculosis W-148]
gi|339295024|gb|AEJ47135.1| hypothetical protein CCDC5079_1945 [Mycobacterium tuberculosis
CCDC5079]
gi|339298648|gb|AEJ50758.1| hypothetical protein CCDC5180_1921 [Mycobacterium tuberculosis
CCDC5180]
Length=144
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/138 (38%), Positives = 75/138 (55%), Gaps = 0/138 (0%)
Query 3 IPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAPLP 62
I D N+LLYAV T H+ + W ++G R+G + L F+R+AT + PLP
Sbjct 3 IVDANVLLYAVNTASEHHKPSLRWLDGALSGADRVGFAWVPLLAFVRLATKVGLFPRPLP 62
Query 63 TADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEI 122
AI V +WL+ P+ L+ RH DI +L +GT ++L D LAA +E+ A I
Sbjct 63 REAAITQVADWLAAPSAVLVNPTVRHADILARMLTYVGTGANLVNDAHLAALAVEHRASI 122
Query 123 HSSDTDFARFADLKWTDP 140
S D+DF RF ++W P
Sbjct 123 VSYDSDFGRFEGVRWDQP 140
>gi|15841594|ref|NP_336631.1| hypothetical protein MT2163 [Mycobacterium tuberculosis CDC1551]
gi|13881843|gb|AAK46445.1| hypothetical protein MT2163 [Mycobacterium tuberculosis CDC1551]
Length=145
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/138 (38%), Positives = 75/138 (55%), Gaps = 0/138 (0%)
Query 3 IPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAPLP 62
I D N+LLYAV T H+ + W ++G R+G + L F+R+AT + PLP
Sbjct 4 IVDANVLLYAVNTTSEHHKPSLRWLDGALSGADRVGFAWVPLLAFVRLATKVGLFPRPLP 63
Query 63 TADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEI 122
AI V +WL+ P+ L+ RH DI +L +GT ++L D LAA +E+ A I
Sbjct 64 REAAITQVADWLAAPSAVLVNPTVRHADILARMLTYVGTGANLVNDAHLAALAVEHRASI 123
Query 123 HSSDTDFARFADLKWTDP 140
S D+DF RF ++W P
Sbjct 124 VSYDSDFGRFEGVRWDQP 141
>gi|307084750|ref|ZP_07493863.1| toxin [Mycobacterium tuberculosis SUMu012]
gi|308365680|gb|EFP54531.1| toxin [Mycobacterium tuberculosis SUMu012]
Length=143
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/138 (38%), Positives = 75/138 (55%), Gaps = 0/138 (0%)
Query 3 IPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAPLP 62
I D N+LLYAV T H+ + W ++G R+G + L F+R+AT + PLP
Sbjct 3 IVDANVLLYAVNTTSEHHKPSLRWLDGALSGADRVGFAWVPLLAFVRLATKVGLFPRPLP 62
Query 63 TADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEI 122
AI V +WL+ P+ L+ RH DI +L +GT ++L D LAA +E+ A I
Sbjct 63 REAAITQVADWLAAPSAVLVNPTVRHADILARMLTYVGTGANLVNDAHLAALAVEHRASI 122
Query 123 HSSDTDFARFADLKWTDP 140
S D+DF RF ++W P
Sbjct 123 VSYDSDFGRFEGVRWDQP 140
>gi|15609240|ref|NP_216619.1| hypothetical protein Rv2103c [Mycobacterium tuberculosis H37Rv]
gi|31793285|ref|NP_855778.1| hypothetical protein Mb2129c [Mycobacterium bovis AF2122/97]
gi|121637987|ref|YP_978211.1| hypothetical protein BCG_2122c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
67 more sequence titles
Length=144
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/138 (38%), Positives = 75/138 (55%), Gaps = 0/138 (0%)
Query 3 IPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAPLP 62
I D N+LLYAV T H+ + W ++G R+G + L F+R+AT + PLP
Sbjct 3 IVDANVLLYAVNTTSEHHKPSLRWLDGALSGADRVGFAWVPLLAFVRLATKVGLFPRPLP 62
Query 63 TADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEI 122
AI V +WL+ P+ L+ RH DI +L +GT ++L D LAA +E+ A I
Sbjct 63 REAAITQVADWLAAPSAVLVNPTVRHADILARMLTYVGTGANLVNDAHLAALAVEHRASI 122
Query 123 HSSDTDFARFADLKWTDP 140
S D+DF RF ++W P
Sbjct 123 VSYDSDFGRFEGVRWDQP 140
>gi|240170675|ref|ZP_04749334.1| PIN domain protein family protein [Mycobacterium kansasii ATCC
12478]
Length=142
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/140 (39%), Positives = 77/140 (55%), Gaps = 0/140 (0%)
Query 2 IIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAPL 61
+I D NLLLYAV + A +W ++ + G +R+GL + + FLRIAT RV PL
Sbjct 1 MIVDANLLLYAVDESSAHNVAAASWLEEVLAGDSRVGLPWQTIGAFLRIATHPRVAENPL 60
Query 62 PTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAE 121
A YV EWL+ P V + A + L +++ +L D QLAA +E+ E
Sbjct 61 SGPAAWRYVAEWLAVPVVWIPPATETTARVYARLSEQVEITGNLVPDAQLAALAVEHGVE 120
Query 122 IHSSDTDFARFADLKWTDPL 141
+ S+DTDF RF L+W +PL
Sbjct 121 LASADTDFMRFPGLRWMNPL 140
>gi|297623624|ref|YP_003705058.1| PIN domain-containing protein [Truepera radiovictrix DSM 17093]
gi|297164804|gb|ADI14515.1| PIN domain protein family protein [Truepera radiovictrix DSM
17093]
Length=144
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/141 (37%), Positives = 72/141 (52%), Gaps = 0/141 (0%)
Query 1 VIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP 60
+I+ DIN L+YA PQH W + VN GL GF+R+ T RV + P
Sbjct 1 MILLDINPLVYAFRPDAPQHPAYVGWLEKLVNQDAAFGLADIVCSGFIRVVTHPRVFSPP 60
Query 61 LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDA 120
P DA+ Y+ + +QPN +L G RH I L L +G ++ D LAA IE +
Sbjct 61 SPLDDALEYLEDIRAQPNCVILAPGERHWRIFLQLCHAVGAKGNVVPDAYLAALAIESGS 120
Query 121 EIHSSDTDFARFADLKWTDPL 141
E+ ++D ARF L+W PL
Sbjct 121 ELATADRGVARFPGLRWRHPL 141
>gi|289750699|ref|ZP_06510077.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289691286|gb|EFD58715.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=136
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/132 (37%), Positives = 71/132 (54%), Gaps = 0/132 (0%)
Query 9 LLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAPLPTADAIA 68
+LYAV T H+ + W ++G R+G + L F+R+AT + PLP AI
Sbjct 1 MLYAVNTTSEHHKPSLRWLDGALSGADRVGFAWVPLLAFVRLATKVGLFPRPLPREAAIT 60
Query 69 YVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEIHSSDTD 128
V +WL+ P+ L+ RH DI +L +GT ++L D LAA +E+ A I S D+D
Sbjct 61 QVADWLAAPSAVLVNPTVRHADILARMLTYVGTGANLVNDAHLAALAVEHRASIVSYDSD 120
Query 129 FARFADLKWTDP 140
F RF ++W P
Sbjct 121 FGRFEGVRWDQP 132
>gi|145221522|ref|YP_001132200.1| PilT domain-containing protein [Mycobacterium gilvum PYR-GCK]
gi|145214008|gb|ABP43412.1| PIN domain family protein [Mycobacterium gilvum PYR-GCK]
Length=145
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/138 (35%), Positives = 73/138 (53%), Gaps = 0/138 (0%)
Query 3 IPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAPLP 62
I D N+LLYAV + H + W ++G+ +GL + + F+R+ T + +PL
Sbjct 3 IVDANVLLYAVNSSSEHHDASRRWLDGALSGNDVVGLAWVPMLAFVRLTTKHGLFPSPLT 62
Query 63 TADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEI 122
DA+A + +W S P ++ RH D+ LL +GT +L D LAA +E+ A I
Sbjct 63 PDDAMARITDWCSAPGAVIVNPTARHADVLATLLSDVGTGGNLVNDAHLAALALEHRARI 122
Query 123 HSSDTDFARFADLKWTDP 140
S D DF RF+ ++W P
Sbjct 123 VSYDNDFGRFSGVQWDVP 140
>gi|333990439|ref|YP_004523053.1| hypothetical protein JDM601_1799 [Mycobacterium sp. JDM601]
gi|333486407|gb|AEF35799.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=143
Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/138 (36%), Positives = 70/138 (51%), Gaps = 1/138 (0%)
Query 3 IPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAPLP 62
I D N+LLYAV T H + W ++G +G + L F+R++T + PL
Sbjct 3 IVDANVLLYAVNTAAEHHDASLRWLDRALSGADTVGFAWVPLLAFVRLSTKEGLFPHPLR 62
Query 63 TADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEI 122
DA+ V EW + + ++ PRH DI GLL ++G +L D LAA IE+ I
Sbjct 63 PEDAVDRVAEWTAASSAVVVNPTPRHADILTGLLARVGAGGNLVNDAHLAALAIEHRGGI 122
Query 123 HSSDTDFARFADLKWTDP 140
S D DF RF ++W P
Sbjct 123 VSYDADFGRFG-IRWDRP 139
>gi|300780204|ref|ZP_07090060.1| PilT domain protein [Corynebacterium genitalium ATCC 33030]
gi|300534314|gb|EFK55373.1| PilT domain protein [Corynebacterium genitalium ATCC 33030]
Length=145
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/140 (36%), Positives = 66/140 (48%), Gaps = 0/140 (0%)
Query 2 IIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAPL 61
+I D N+L+YA A +W + G R+G + L F RI T+ + A PL
Sbjct 1 MIIDANVLIYASDENATHFAEASSWLDGALRGTERVGFPWICLLAFQRITTNPALFAMPL 60
Query 62 PTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAE 121
+ A Y+ WL PN + GP+H I L L TD LAA IE+
Sbjct 61 TPSRASDYIENWLKHPNSWVPQPGPQHASILRTLTVDSDARGTLVTDAHLAALAIEHGTS 120
Query 122 IHSSDTDFARFADLKWTDPL 141
I S D+DFARF L+W PL
Sbjct 121 ICSFDSDFARFQGLRWFSPL 140
>gi|320105317|ref|YP_004180907.1| PIN domain-containing protein family protein [Terriglobus saanensis
SP1PR4]
gi|319923838|gb|ADV80913.1| PIN domain protein family protein [Terriglobus saanensis SP1PR4]
Length=145
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/143 (35%), Positives = 66/143 (47%), Gaps = 0/143 (0%)
Query 1 VIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP 60
+I+ D NLL+YA P H+R+ W + + + + A+ FLRI T +
Sbjct 1 MILLDANLLIYAYDEAAPHHKRSSKWIERIFSSREPVLIPVAAIMAFLRIMTHQALPGPR 60
Query 61 LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDA 120
+ I V EW S +V + G H + L S L TD LAA IE A
Sbjct 61 FSMEEGIGIVDEWFSLSHVSIAITGNEHWNYLRQTLTDGQARSSLVTDSHLAALAIENGA 120
Query 121 EIHSSDTDFARFADLKWTDPLRE 143
+ S D DFARF L+W DPL E
Sbjct 121 TLCSVDRDFARFPGLRWVDPLTE 143
>gi|296130776|ref|YP_003638026.1| PIN domain protein family protein [Cellulomonas flavigena DSM
20109]
gi|296022591|gb|ADG75827.1| PIN domain protein family protein [Cellulomonas flavigena DSM
20109]
Length=143
Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/137 (34%), Positives = 67/137 (49%), Gaps = 0/137 (0%)
Query 1 VIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP 60
+I+PD+N+L+ A+ P+H W + V+ +GLT L G +R+ T RV A P
Sbjct 1 MILPDVNVLVGALRADSPRHDALRRWLEAAVDAPEPLGLTDAVLGGTVRVLTHPRVFARP 60
Query 61 LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDA 120
P A+ V + + P + G RH +I L +L D Q AA +E+ A
Sbjct 61 TPLRTALDLVGDLRAHPGTVRVAPGDRHWEIVADLCRAADARGNLVADAQHAAVAVEHGA 120
Query 121 EIHSSDTDFARFADLKW 137
S D DFARF L+W
Sbjct 121 TWVSQDRDFARFPGLRW 137
>gi|297567544|ref|YP_003686516.1| PIN domain-containing protein family protein [Meiothermus silvanus
DSM 9946]
gi|296851993|gb|ADH65008.1| PIN domain protein family protein [Meiothermus silvanus DSM 9946]
Length=143
Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/140 (36%), Positives = 72/140 (52%), Gaps = 4/140 (2%)
Query 5 DINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIAT--SARVLAAPLP 62
D+N+L+YA PQH +AW ++ +G+ LRI T S LAAPL
Sbjct 5 DVNVLIYAFRRDSPQHPACYAWLSGSLATGESVGVPSWVELAVLRINTLPSLGDLAAPL- 63
Query 63 TADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEI 122
D +A++ E S P+ L+ GP+HL I L +LG + D +AA IE+ A +
Sbjct 64 -KDVLAFLYELRSHPSYQLVEPGPKHLPIFEDLCQRLGLRGNDLNDAFIAALAIEHGATL 122
Query 123 HSSDTDFARFADLKWTDPLR 142
S+D FARF ++ DPL
Sbjct 123 VSTDRGFARFPGVRRIDPLE 142
>gi|306774366|ref|ZP_07412703.1| toxin [Mycobacterium tuberculosis SUMu001]
gi|306974699|ref|ZP_07487360.1| toxin [Mycobacterium tuberculosis SUMu010]
gi|307082408|ref|ZP_07491578.1| toxin [Mycobacterium tuberculosis SUMu011]
gi|308217200|gb|EFO76599.1| toxin [Mycobacterium tuberculosis SUMu001]
gi|308356102|gb|EFP44953.1| toxin [Mycobacterium tuberculosis SUMu010]
gi|308360056|gb|EFP48907.1| toxin [Mycobacterium tuberculosis SUMu011]
Length=142
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/138 (35%), Positives = 67/138 (49%), Gaps = 4/138 (2%)
Query 5 DINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALF--GFLRIATSARVLAAPLP 62
D+N+LL A P HR W+ + T P L FLR+ T+ R+ P P
Sbjct 5 DVNVLLAAHRGDHPNHRTVRPWFDRLLAADD--PFTVPNLVWASFLRLTTNRRIFEIPSP 62
Query 63 TADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEI 122
ADA A+V +QP+ + GPRHL + L D+ + L D LAA +E+ +
Sbjct 63 RADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLAAIAVEHHCAV 122
Query 123 HSSDTDFARFADLKWTDP 140
S D DFARFA ++ P
Sbjct 123 VSLDRDFARFASVRHIRP 140
>gi|253797202|ref|YP_003030203.1| toxin [Mycobacterium tuberculosis KZN 1435]
gi|289552530|ref|ZP_06441740.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
gi|297632757|ref|ZP_06950537.1| toxin [Mycobacterium tuberculosis KZN 4207]
gi|297729731|ref|ZP_06958849.1| toxin [Mycobacterium tuberculosis KZN R506]
gi|313657057|ref|ZP_07813937.1| toxin [Mycobacterium tuberculosis KZN V2475]
gi|253318705|gb|ACT23308.1| toxin [Mycobacterium tuberculosis KZN 1435]
gi|289437162|gb|EFD19655.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
gi|328456989|gb|AEB02412.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
4207]
Length=142
Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/138 (35%), Positives = 66/138 (48%), Gaps = 4/138 (2%)
Query 5 DINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALF--GFLRIATSARVLAAPLP 62
D+N+LL A P HR W+ + T P L FLR+ T+ R+ P P
Sbjct 5 DVNVLLAAHRGDHPNHRTVRPWFDRLLAADD--PFTVPNLVWASFLRLTTNRRIFEIPSP 62
Query 63 TADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEI 122
ADA A+V +QP+ + GPRHL + L D+ + L D L A +E+ +
Sbjct 63 RADAFAFVEAVTAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHCAV 122
Query 123 HSSDTDFARFADLKWTDP 140
S D DFARFA ++ P
Sbjct 123 VSLDRDFARFASVRHIRP 140
>gi|15607418|ref|NP_214791.1| hypothetical protein Rv0277c [Mycobacterium tuberculosis H37Rv]
gi|15839658|ref|NP_334695.1| hypothetical protein MT0289 [Mycobacterium tuberculosis CDC1551]
gi|31791455|ref|NP_853948.1| hypothetical protein Mb0283c [Mycobacterium bovis AF2122/97]
64 more sequence titles
Length=142
Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/138 (35%), Positives = 66/138 (48%), Gaps = 4/138 (2%)
Query 5 DINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALF--GFLRIATSARVLAAPLP 62
D+N+LL A P HR W+ + T P L FLR+ T+ R+ P P
Sbjct 5 DVNVLLAAHRGDHPNHRTVRPWFDRLLAADD--PFTVPNLVWASFLRLTTNRRIFEIPSP 62
Query 63 TADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEI 122
ADA A+V +QP+ + GPRHL + L D+ + L D L A +E+ +
Sbjct 63 RADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHCAV 122
Query 123 HSSDTDFARFADLKWTDP 140
S D DFARFA ++ P
Sbjct 123 VSLDRDFARFASVRHIRP 140
>gi|340625313|ref|YP_004743765.1| hypothetical protein MCAN_02841 [Mycobacterium canettii CIPT
140010059]
gi|340003503|emb|CCC42624.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=142
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/138 (35%), Positives = 66/138 (48%), Gaps = 4/138 (2%)
Query 5 DINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALF--GFLRIATSARVLAAPLP 62
D N+LL A P HR W+ + T P L FLR+ T+ R+ P P
Sbjct 5 DANVLLAAHRGDHPNHRTVRPWFDRLLAADD--PFTVPNLVWASFLRLTTNRRIFEIPSP 62
Query 63 TADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEI 122
ADA A+V +QP+ + GPRHL + L D+ + L D LAA +E+ +
Sbjct 63 RADAFAFVDAVTAQPHHLPTSPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVEHHCAV 122
Query 123 HSSDTDFARFADLKWTDP 140
S D DFARFA ++ P
Sbjct 123 VSLDRDFARFASVRHIRP 140
>gi|88811999|ref|ZP_01127252.1| hypothetical protein NB231_06401 [Nitrococcus mobilis Nb-231]
gi|88790883|gb|EAR21997.1| hypothetical protein NB231_06401 [Nitrococcus mobilis Nb-231]
Length=145
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/143 (32%), Positives = 68/143 (48%), Gaps = 0/143 (0%)
Query 1 VIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP 60
+I+ D+N+L+YA H W ++ +NG G++ L GF+R+ T RV P
Sbjct 1 MILMDVNVLVYAHREDTADHLAYRDWLEEQINGLGAYGVSDLVLSGFIRVVTHPRVFERP 60
Query 61 LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDA 120
P A+A+V + SQP + GPRH I L+ +L D AA IE
Sbjct 61 TPLDRALAFVHQVRSQPQAVPIRPGPRHWAIFEKLVRLSKAEGNLVPDAYHAALAIEAGC 120
Query 121 EIHSSDTDFARFADLKWTDPLRE 143
+ ++D F RF L+ P R+
Sbjct 121 DWITTDKGFLRFPGLRARHPFRK 143
>gi|15607889|ref|NP_215263.1| hypothetical protein Rv0749 [Mycobacterium tuberculosis H37Rv]
gi|15840162|ref|NP_335199.1| hypothetical protein MT0773 [Mycobacterium tuberculosis CDC1551]
gi|31791935|ref|NP_854428.1| hypothetical protein Mb0770 [Mycobacterium bovis AF2122/97]
64 more sequence titles
Length=142
Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/138 (35%), Positives = 65/138 (48%), Gaps = 4/138 (2%)
Query 5 DINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALF--GFLRIATSARVLAAPLP 62
D N+LL A P HR W+ + T P L FLR+AT+ R+ P P
Sbjct 5 DANVLLAAHRGDHPNHRTVRPWFDRLLAADD--PFTVPNLVWASFLRLATNRRIFEIPSP 62
Query 63 TADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEI 122
A+A A+V +QP+ GPRHL + L D+ + L D LAA + + +
Sbjct 63 RAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHCAV 122
Query 123 HSSDTDFARFADLKWTDP 140
S D DFARFA ++ P
Sbjct 123 VSLDRDFARFASVRHIRP 140
>gi|121636671|ref|YP_976894.1| hypothetical protein BCG_0799 [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224989143|ref|YP_002643830.1| hypothetical protein JTY_0769 [Mycobacterium bovis BCG str. Tokyo
172]
gi|289442150|ref|ZP_06431894.1| toxin [Mycobacterium tuberculosis T46]
10 more sequence titles
Length=142
Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/138 (35%), Positives = 65/138 (48%), Gaps = 4/138 (2%)
Query 5 DINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALF--GFLRIATSARVLAAPLP 62
D N+LL A P HR W+ + T P L FLR+AT+ R+ P P
Sbjct 5 DANVLLAAHRGDHPNHRTVRPWFDRLLAADD--PFTVPNLVWASFLRLATNRRIFEIPSP 62
Query 63 TADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEI 122
A+A A+V +QP+ GPRHL + L D+ + L D LAA + + +
Sbjct 63 RAEAFAFVEAVTAQPHHLPTNPGPRHLVLLRKLCDEADASGDLIPDAVLAAIAVGHHCAV 122
Query 123 HSSDTDFARFADLKWTDP 140
S D DFARFA ++ P
Sbjct 123 VSLDRDFARFASVRHIRP 140
>gi|340625767|ref|YP_004744219.1| hypothetical protein MCAN_07521 [Mycobacterium canettii CIPT
140010059]
gi|340003957|emb|CCC43092.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=142
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/138 (34%), Positives = 64/138 (47%), Gaps = 4/138 (2%)
Query 5 DINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALF--GFLRIATSARVLAAPLP 62
D N+LL A P HR W+ + T P L FLR+AT+ R+ P P
Sbjct 5 DANVLLAAHRGDHPNHRTVRPWFDRLLAADD--PFTVPNLVWASFLRLATNRRIFEIPSP 62
Query 63 TADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEI 122
A A A++ +QP+ GPRHL + L D+ + L D LAA +E+ +
Sbjct 63 RAAAFAFIDAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVEHHCAV 122
Query 123 HSSDTDFARFADLKWTDP 140
S D DFARF ++ P
Sbjct 123 VSLDRDFARFTSVRHIRP 140
>gi|258593476|emb|CBE69815.1| conserved protein of unknown function [NC10 bacterium 'Dutch
sediment']
Length=144
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/146 (33%), Positives = 70/146 (48%), Gaps = 8/146 (5%)
Query 1 VIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP 60
+ + D N+L+YA P HRR HA QD + LT+ L+ FLR+ T RV P
Sbjct 1 MFVSDTNVLIYAADADSPFHRRCHARLQDWRGQTSAWYLTWGILYEFLRVTTHPRVFRQP 60
Query 61 LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKL----GTASH-LTTDVQLAAYG 115
P A A ++ L+ P + LL RH + + +L G H T + + +G
Sbjct 61 WPAARAWEFIEAVLASPGLSLLLPTDRHATVVAEVFGELPHLAGNVIHDAHTAILMREHG 120
Query 116 IEYDAEIHSSDTDFARFADLKWTDPL 141
I I++ DTDF RF L+ DP+
Sbjct 121 IR---RIYTRDTDFHRFPFLEPIDPM 143
>gi|322435687|ref|YP_004217899.1| PIN domain protein family protein [Acidobacterium sp. MP5ACTX9]
gi|321163414|gb|ADW69119.1| PIN domain protein family protein [Acidobacterium sp. MP5ACTX9]
Length=143
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/145 (35%), Positives = 73/145 (51%), Gaps = 7/145 (4%)
Query 1 VIIPDINLLLYAVITGFPQHRRAHAW----WQDTVNGHTRIGLTYPALFGFLRIATSARV 56
+I+ D NLLLYA H+ A ++ + DT IG+ FLR+ T+ V
Sbjct 1 MIVLDANLLLYAYTARSSFHQPARSYLDHIFSDTSES---IGIPIQCATAFLRLITNPAV 57
Query 57 LAAPLPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGI 116
A + DAIA V EW + P+V +L G H + L D +AA+ +
Sbjct 58 TGARIAMDDAIARVEEWQALPHVRILYPGEEHWQFLKTVTRNGHATGDLIADAAIAAFAL 117
Query 117 EYDAEIHSSDTDFARFADLKWTDPL 141
EY A +HS+D DFARF+ ++W +PL
Sbjct 118 EYGAVVHSNDRDFARFSSIRWHNPL 142
>gi|258593480|emb|CBE69819.1| Conserved membrane protein [NC10 bacterium 'Dutch sediment']
Length=144
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/138 (32%), Positives = 66/138 (48%), Gaps = 1/138 (0%)
Query 5 DINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAPLPTA 64
D+N+LLYA T P+H A + ++ + + L +LRIAT R+ A PL +
Sbjct 6 DVNVLLYASDTSSPKHPEAIRFMEERAFDPDLFCIAWSTLIAYLRIATYPRIFARPLSPS 65
Query 65 DAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYD-AEIH 123
DA+ V LS P V L+ G LD G+ +L D LA ++ ++
Sbjct 66 DALGNVESLLSLPRVRTLSEGEDFLDGYRGVTAHFPVRGNLVPDAHLATLLQQHGVGRLY 125
Query 124 SSDTDFARFADLKWTDPL 141
++D DF +F L+ DP
Sbjct 126 TADRDFRKFDFLEVVDPF 143
>gi|289744472|ref|ZP_06503850.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|289685000|gb|EFD52488.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
Length=131
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/125 (34%), Positives = 59/125 (48%), Gaps = 4/125 (3%)
Query 18 PQHRRAHAWWQDTVNGHTRIGLTYPALF--GFLRIATSARVLAAPLPTADAIAYVREWLS 75
P HR W+ + T P L FLR+AT+ R+ P P A+A A+V +
Sbjct 7 PNHRTVRPWFDRLLAADD--PFTVPNLVWASFLRLATNRRIFEIPSPRAEAFAFVEAVTA 64
Query 76 QPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEIHSSDTDFARFADL 135
QP+ GPRHL + L D+ + L D LAA + + + S D DFARFA +
Sbjct 65 QPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHCAVVSLDRDFARFASV 124
Query 136 KWTDP 140
+ P
Sbjct 125 RHIRP 129
>gi|340627865|ref|YP_004746317.1| hypothetical protein MCAN_28941 [Mycobacterium canettii CIPT
140010059]
gi|157382523|gb|ABV48756.1| Rv2872 [Mycobacterium canettii]
gi|340006055|emb|CCC45225.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=147
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/141 (32%), Positives = 62/141 (44%), Gaps = 0/141 (0%)
Query 1 VIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP 60
++ D+N+L+YA +H + N +GL L GF+R+ T+ RV P
Sbjct 1 MLCVDVNVLVYAHRADLREHTDYRGLLERLANDDEPLGLPDSVLAGFIRVVTNRRVFTEP 60
Query 61 LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDA 120
DA V L+ P L G RH L + + D LAAY +E +A
Sbjct 61 TSPQDAWQAVDALLAAPAAMRLRPGERHWMAFRQLASDVDANGNDIADAHLAAYALENNA 120
Query 121 EIHSSDTDFARFADLKWTDPL 141
S+D FARF L+W PL
Sbjct 121 TWLSADRGFARFRRLRWRHPL 141
>gi|121638754|ref|YP_978978.1| hypothetical protein BCG_2894 [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224991246|ref|YP_002645935.1| hypothetical protein JTY_2889 [Mycobacterium bovis BCG str. Tokyo
172]
gi|121494402|emb|CAL72883.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224774361|dbj|BAH27167.1| hypothetical protein JTY_2889 [Mycobacterium bovis BCG str. Tokyo
172]
gi|341602792|emb|CCC65470.1| conserved hypothetical protein [Mycobacterium bovis BCG str.
Moreau RDJ]
Length=147
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/141 (32%), Positives = 62/141 (44%), Gaps = 0/141 (0%)
Query 1 VIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP 60
++ D+N+L+YA +H + N +GL L GF+R+ T+ RV P
Sbjct 1 MLCVDVNVLVYAHRADLREHADYRGLLERLANDDEPLGLPDSVLAGFIRVVTNRRVFTEP 60
Query 61 LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDA 120
DA V L+ P L G RH L + + D LAAY +E +A
Sbjct 61 TSPQDAWQAVDTLLAAPAAMRLRPGERHWMAFRQLASDVDANGNDIADAHLAAYALENNA 120
Query 121 EIHSSDTDFARFADLKWTDPL 141
S+D FARF L+W PL
Sbjct 121 TWLSADRGFARFRRLRWRHPL 141
>gi|15610009|ref|NP_217388.1| hypothetical protein Rv2872 [Mycobacterium tuberculosis H37Rv]
gi|15842413|ref|NP_337450.1| hypothetical protein MT2939 [Mycobacterium tuberculosis CDC1551]
gi|31794049|ref|NP_856542.1| hypothetical protein Mb2897 [Mycobacterium bovis AF2122/97]
75 more sequence titles
Length=147
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/141 (32%), Positives = 62/141 (44%), Gaps = 0/141 (0%)
Query 1 VIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP 60
++ D+N+L+YA +H + N +GL L GF+R+ T+ RV P
Sbjct 1 MLCVDVNVLVYAHRADLREHADYRGLLERLANDDEPLGLPDSVLAGFIRVVTNRRVFTEP 60
Query 61 LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDA 120
DA V L+ P L G RH L + + D LAAY +E +A
Sbjct 61 TSPQDAWQAVDALLAAPAAMRLRPGERHWMAFRQLASDVDANGNDIADAHLAAYALENNA 120
Query 121 EIHSSDTDFARFADLKWTDPL 141
S+D FARF L+W PL
Sbjct 121 TWLSADRGFARFRRLRWRHPL 141
>gi|289756836|ref|ZP_06516214.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|289712400|gb|EFD76412.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
Length=104
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/95 (37%), Positives = 50/95 (53%), Gaps = 0/95 (0%)
Query 46 GFLRIATSARVLAAPLPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHL 105
FLR+AT+ R+ P P A+A A+V +QP+ GPRHL + L D+ + L
Sbjct 8 SFLRLATNRRIFEIPSPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDL 67
Query 106 TTDVQLAAYGIEYDAEIHSSDTDFARFADLKWTDP 140
D LAA + + + S D DFARFA ++ P
Sbjct 68 IPDAVLAAIAVGHHCAVVSLDRDFARFASVRHIRP 102
>gi|313835966|gb|EFS73680.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL037PA2]
gi|314927191|gb|EFS91022.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL044PA1]
gi|314970722|gb|EFT14820.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium
acnes HL037PA3]
Length=116
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/114 (36%), Positives = 57/114 (50%), Gaps = 2/114 (1%)
Query 8 LLLYAVITGFPQHRRAHAWWQDTVNGHTR-IGLTYPALFGFLRIATSARVLAAPLPTADA 66
+L+YAV T H+ + W + + G TR IG+ + +L GF+RI+T R+ A PL A
Sbjct 1 MLVYAVNTDAQYHKASRVWLLEGLRGSTRVIGMPWASLLGFVRISTHPRIFANPLEAEQA 60
Query 67 IAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDA 120
I+ V WLS P V L+ PR G SH + A +GI D+
Sbjct 61 ISVVNAWLSYPRVVTLSL-PRLAPCGSARGIGHGWKSHQRCPLGCAGFGIRRDS 113
>gi|302542963|ref|ZP_07295305.1| putative toxin-antitoxin system, toxin component, PIN family
[Streptomyces hygroscopicus ATCC 53653]
gi|302460581|gb|EFL23674.1| putative toxin-antitoxin system, toxin component, PIN family
[Streptomyces himastatinicus ATCC 53653]
Length=144
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/142 (31%), Positives = 64/142 (46%), Gaps = 1/142 (0%)
Query 1 VIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP 60
+I D N+L+YA + P H A A + L +P L F IAT R+ P
Sbjct 1 MIAVDTNILVYAHRSDSPFHSAAAAQIKGLAEARAPWALPWPCLHEFFSIATHPRIYQPP 60
Query 61 LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDA 120
AIA + WLS P+V LL+ + +L+ A + D ++AA
Sbjct 61 STAEQAIAQIDAWLSSPSVVLLSEADTYWPTLRQMLEDGKVAGPMVHDGRIAALCANSGV 120
Query 121 -EIHSSDTDFARFADLKWTDPL 141
E+ S+D DF+RF L +PL
Sbjct 121 RELWSADRDFSRFPALTTRNPL 142
>gi|240171734|ref|ZP_04750393.1| hypothetical protein MkanA1_20640 [Mycobacterium kansasii ATCC
12478]
gi|157382510|gb|ABV48746.1| Rv2872 [Mycobacterium kansasii ATCC 12478]
Length=143
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/137 (32%), Positives = 62/137 (46%), Gaps = 0/137 (0%)
Query 5 DINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAPLPTA 64
D+N+L+ A +H + NG +GL L GF+R+ T+ R+ P
Sbjct 5 DVNVLVNAHRADLREHPNYRDVLERLANGDEPLGLPDSVLAGFVRVVTNRRIFVEPTSQP 64
Query 65 DAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEIHS 124
DA V L+ P L G RH + L + + + D LAAY +E +A S
Sbjct 65 DAWQAVDALLAAPAAIRLKPGERHWTLFRQLAADIDASGNDIADAYLAAYALENNATWVS 124
Query 125 SDTDFARFADLKWTDPL 141
+D FARF L+W PL
Sbjct 125 ADRGFARFGRLRWRHPL 141
>gi|340628670|ref|YP_004747122.1| hypothetical protein MCAN_37181 [Mycobacterium canettii CIPT
140010059]
gi|340006860|emb|CCC46049.1| putative conserved membrane protein [Mycobacterium canettii CIPT
140010059]
Length=145
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/141 (27%), Positives = 65/141 (47%), Gaps = 7/141 (4%)
Query 5 DINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAPLPTA 64
D+++L++A P H +A + + G + L +P G+LR+ T +L APL
Sbjct 6 DVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPLAPE 65
Query 65 DAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAA----YGIEYDA 120
A+ + ++ S+P+V + + + D + +L D L A +GI A
Sbjct 66 VAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGI---A 122
Query 121 EIHSSDTDFARFADLKWTDPL 141
I S D DF +F ++ DP
Sbjct 123 TIWSHDRDFRKFEGIRIRDPF 143
>gi|15610833|ref|NP_218214.1| hypothetical protein Rv3697c [Mycobacterium tuberculosis H37Rv]
gi|15843315|ref|NP_338352.1| hypothetical protein MT3799 [Mycobacterium tuberculosis CDC1551]
gi|148663560|ref|YP_001285083.1| hypothetical protein MRA_3732 [Mycobacterium tuberculosis H37Ra]
62 more sequence titles
Length=145
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/141 (27%), Positives = 65/141 (47%), Gaps = 7/141 (4%)
Query 5 DINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAPLPTA 64
D+++L++A P H +A + + G + L +P G+LR+ T +L APL
Sbjct 6 DVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPLAPE 65
Query 65 DAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAA----YGIEYDA 120
A+ + ++ S+P+V + + + D + +L D L A +GI A
Sbjct 66 VAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGI---A 122
Query 121 EIHSSDTDFARFADLKWTDPL 141
I S D DF +F ++ DP
Sbjct 123 TIWSHDRDFRKFEGIRIRDPF 143
>gi|258593410|emb|CBE69749.1| conserved protein of unknown function [NC10 bacterium 'Dutch
sediment']
Length=144
Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/147 (30%), Positives = 63/147 (43%), Gaps = 7/147 (4%)
Query 1 VIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP 60
+I D NLL+YA P H A+A + + +P L FL I T + A
Sbjct 1 MIAVDTNLLVYAHREDSPWHTAAYARIAELAESRAPWAIPWPCLHEFLAIVTHPTIYAPA 60
Query 61 LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAA----YGI 116
P A A+ V WL P++ LLT + + K A D +AA +G+
Sbjct 61 TPLAIALDQVDAWLESPSLTLLTEMSGYWIQLRHAIQKGQIAGPQVHDAHIAALCRLHGV 120
Query 117 EYDAEIHSSDTDFARFADLKWTDPLRE 143
E+ ++D F RF DL +PL E
Sbjct 121 R---ELWTADRHFGRFPDLPVRNPLVE 144
>gi|160898241|ref|YP_001563823.1| PilT domain-containing protein [Delftia acidovorans SPH-1]
gi|160363825|gb|ABX35438.1| PIN domain protein family protein [Delftia acidovorans SPH-1]
Length=145
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/134 (27%), Positives = 59/134 (45%), Gaps = 4/134 (2%)
Query 2 IIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTR---IGLTYPALFGFLRIATSARVLA 58
+ PD+NLL+ A + P H A W + + ++ + L + FLR+ T ++
Sbjct 1 MTPDVNLLVAASRSDHPHHSVARDWLEQAMADASQGVLLKLQPMVVASFLRLVTHPKIFV 60
Query 59 APLPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEY 118
P P A+A+ ++ L+ P V+ G + DK A++ D LAA I
Sbjct 61 NPTPMAEALRFIDALLASPGVEQAVLGAEWPALRQLCADK-ALAANDVPDAWLAAAAIHQ 119
Query 119 DAEIHSSDTDFARF 132
+ S D DF R
Sbjct 120 GEHVVSFDADFKRL 133
Lambda K H
0.323 0.138 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129250525032
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40