BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1242

Length=143
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15608382|ref|NP_215758.1|  hypothetical protein Rv1242 [Mycoba...   286    5e-76
gi|289573902|ref|ZP_06454129.1|  toxin [Mycobacterium tuberculosi...   285    2e-75
gi|167967876|ref|ZP_02550153.1|  hypothetical protein MtubH3_0751...   246    1e-63
gi|240168912|ref|ZP_04747571.1|  hypothetical protein MkanA1_0634...   224    5e-57
gi|254550248|ref|ZP_05140695.1|  toxin [Mycobacterium tuberculosi...   155    2e-36
gi|88810689|ref|ZP_01125946.1|  hypothetical protein NB231_16453 ...   132    1e-29
gi|116748338|ref|YP_845025.1|  PilT domain-containing protein [Sy...   120    6e-26
gi|297623633|ref|YP_003705067.1|  PIN domain-containing protein [...   112    2e-23
gi|116624725|ref|YP_826881.1|  PilT domain-containing protein [Ca...   111    4e-23
gi|308270136|emb|CBX26748.1|  hypothetical protein N47_A07770 [un...   107    6e-22
gi|333991903|ref|YP_004524517.1|  PIN domain-containing protein f...   102    2e-20
gi|340627115|ref|YP_004745567.1|  hypothetical protein MCAN_21291...  99.8    1e-19
gi|229822546|ref|YP_002884072.1|  PIN domain-containing protein f...  99.4    2e-19
gi|294054235|ref|YP_003547893.1|  PIN domain-containing protein f...  99.0    2e-19
gi|289758220|ref|ZP_06517598.1|  conserved hypothetical protein [...  99.0    2e-19
gi|15841594|ref|NP_336631.1|  hypothetical protein MT2163 [Mycoba...  98.6    3e-19
gi|307084750|ref|ZP_07493863.1|  toxin [Mycobacterium tuberculosi...  98.6    3e-19
gi|15609240|ref|NP_216619.1|  hypothetical protein Rv2103c [Mycob...  98.2    3e-19
gi|240170675|ref|ZP_04749334.1|  PIN domain protein family protei...  93.2    1e-17
gi|297623624|ref|YP_003705058.1|  PIN domain-containing protein [...  93.2    1e-17
gi|289750699|ref|ZP_06510077.1|  conserved hypothetical protein [...  92.4    2e-17
gi|145221522|ref|YP_001132200.1|  PilT domain-containing protein ...  92.0    2e-17
gi|333990439|ref|YP_004523053.1|  hypothetical protein JDM601_179...  87.0    8e-16
gi|300780204|ref|ZP_07090060.1|  PilT domain protein [Corynebacte...  86.3    1e-15
gi|320105317|ref|YP_004180907.1|  PIN domain-containing protein f...  82.4    2e-14
gi|296130776|ref|YP_003638026.1|  PIN domain protein family prote...  77.4    6e-13
gi|297567544|ref|YP_003686516.1|  PIN domain-containing protein f...  77.4    7e-13
gi|306774366|ref|ZP_07412703.1|  toxin [Mycobacterium tuberculosi...  75.5    2e-12
gi|253797202|ref|YP_003030203.1|  toxin [Mycobacterium tuberculos...  74.3    5e-12
gi|15607418|ref|NP_214791.1|  hypothetical protein Rv0277c [Mycob...  73.9    7e-12
gi|340625313|ref|YP_004743765.1|  hypothetical protein MCAN_02841...  73.6    1e-11
gi|88811999|ref|ZP_01127252.1|  hypothetical protein NB231_06401 ...  72.8    1e-11
gi|15607889|ref|NP_215263.1|  hypothetical protein Rv0749 [Mycoba...  70.9    5e-11
gi|121636671|ref|YP_976894.1|  hypothetical protein BCG_0799 [Myc...  70.9    6e-11
gi|340625767|ref|YP_004744219.1|  hypothetical protein MCAN_07521...  69.3    2e-10
gi|258593476|emb|CBE69815.1|  conserved protein of unknown functi...  69.3    2e-10
gi|322435687|ref|YP_004217899.1|  PIN domain protein family prote...  68.2    4e-10
gi|258593480|emb|CBE69819.1|  Conserved membrane protein [NC10 ba...  66.6    1e-09
gi|289744472|ref|ZP_06503850.1|  conserved hypothetical protein [...  65.9    2e-09
gi|340627865|ref|YP_004746317.1|  hypothetical protein MCAN_28941...  65.9    2e-09
gi|121638754|ref|YP_978978.1|  hypothetical protein BCG_2894 [Myc...  65.9    2e-09
gi|15610009|ref|NP_217388.1|  hypothetical protein Rv2872 [Mycoba...  65.5    2e-09
gi|289756836|ref|ZP_06516214.1|  conserved hypothetical protein [...  63.9    7e-09
gi|313835966|gb|EFS73680.1|  toxin-antitoxin system, toxin compon...  62.8    2e-08
gi|302542963|ref|ZP_07295305.1|  putative toxin-antitoxin system,...  59.7    1e-07
gi|240171734|ref|ZP_04750393.1|  hypothetical protein MkanA1_2064...  53.5    1e-05
gi|340628670|ref|YP_004747122.1|  hypothetical protein MCAN_37181...  51.6    4e-05
gi|15610833|ref|NP_218214.1|  hypothetical protein Rv3697c [Mycob...  51.6    4e-05
gi|258593410|emb|CBE69749.1|  conserved protein of unknown functi...  50.4    9e-05
gi|160898241|ref|YP_001563823.1|  PilT domain-containing protein ...  50.1    1e-04


>gi|15608382|ref|NP_215758.1| hypothetical protein Rv1242 [Mycobacterium tuberculosis H37Rv]
 gi|15840687|ref|NP_335724.1| hypothetical protein MT1280 [Mycobacterium tuberculosis CDC1551]
 gi|31792435|ref|NP_854928.1| hypothetical protein Mb1274 [Mycobacterium bovis AF2122/97]
 79 more sequence titles
 Length=143

 Score =  286 bits (733),  Expect = 5e-76, Method: Compositional matrix adjust.
 Identities = 142/143 (99%), Positives = 143/143 (100%), Gaps = 0/143 (0%)

Query  1    VIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP  60
            +IIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP
Sbjct  1    MIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP  60

Query  61   LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDA  120
            LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDA
Sbjct  61   LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDA  120

Query  121  EIHSSDTDFARFADLKWTDPLRE  143
            EIHSSDTDFARFADLKWTDPLRE
Sbjct  121  EIHSSDTDFARFADLKWTDPLRE  143


>gi|289573902|ref|ZP_06454129.1| toxin [Mycobacterium tuberculosis K85]
 gi|289538333|gb|EFD42911.1| toxin [Mycobacterium tuberculosis K85]
Length=143

 Score =  285 bits (728),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 141/143 (99%), Positives = 142/143 (99%), Gaps = 0/143 (0%)

Query  1    VIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP  60
            +IIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP
Sbjct  1    MIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP  60

Query  61   LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDA  120
            LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASH TTDVQLAAYGIEYDA
Sbjct  61   LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHRTTDVQLAAYGIEYDA  120

Query  121  EIHSSDTDFARFADLKWTDPLRE  143
            EIHSSDTDFARFADLKWTDPLRE
Sbjct  121  EIHSSDTDFARFADLKWTDPLRE  143


>gi|167967876|ref|ZP_02550153.1| hypothetical protein MtubH3_07513 [Mycobacterium tuberculosis 
H37Ra]
Length=123

 Score =  246 bits (627),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 122/123 (99%), Positives = 123/123 (100%), Gaps = 0/123 (0%)

Query  1    VIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP  60
            +IIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP
Sbjct  1    MIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP  60

Query  61   LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDA  120
            LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDA
Sbjct  61   LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDA  120

Query  121  EIH  123
            EIH
Sbjct  121  EIH  123


>gi|240168912|ref|ZP_04747571.1| hypothetical protein MkanA1_06345 [Mycobacterium kansasii ATCC 
12478]
Length=143

 Score =  224 bits (570),  Expect = 5e-57, Method: Compositional matrix adjust.
 Identities = 105/141 (75%), Positives = 123/141 (88%), Gaps = 0/141 (0%)

Query  1    VIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP  60
            +IIPD+NLLLYAVITGFPQHRRA+AWW DTVN   RIGLTYPA+FGFLRI T+AR+L  P
Sbjct  1    MIIPDVNLLLYAVITGFPQHRRAYAWWHDTVNSQERIGLTYPAVFGFLRIVTNARILTEP  60

Query  61   LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDA  120
            L   +A+AYVR+WL+QPNVDLL    RHLD+ALGLL++LGTAS+LTTDVQLAAY IE++A
Sbjct  61   LSATEAVAYVRDWLTQPNVDLLIPSARHLDLALGLLEQLGTASNLTTDVQLAAYAIEHNA  120

Query  121  EIHSSDTDFARFADLKWTDPL  141
            E+HSSD DFARFA L WT+PL
Sbjct  121  EMHSSDADFARFAGLAWTNPL  141


>gi|254550248|ref|ZP_05140695.1| toxin [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
Length=89

 Score =  155 bits (392),  Expect = 2e-36, Method: Compositional matrix adjust.
 Identities = 76/76 (100%), Positives = 76/76 (100%), Gaps = 0/76 (0%)

Query  68   AYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEIHSSDT  127
            AYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEIHSSDT
Sbjct  14   AYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEIHSSDT  73

Query  128  DFARFADLKWTDPLRE  143
            DFARFADLKWTDPLRE
Sbjct  74   DFARFADLKWTDPLRE  89


>gi|88810689|ref|ZP_01125946.1| hypothetical protein NB231_16453 [Nitrococcus mobilis Nb-231]
 gi|88792319|gb|EAR23429.1| hypothetical protein NB231_16453 [Nitrococcus mobilis Nb-231]
Length=144

 Score =  132 bits (332),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 64/142 (46%), Positives = 88/142 (62%), Gaps = 0/142 (0%)

Query  1    VIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP  60
            +I+PD+NLL+YA  T  P H  A AWW+  ++    +GL + +  GF+R+ T   VL  P
Sbjct  1    MIVPDVNLLIYAYNTDAPHHSDAKAWWEGLLSSEEPVGLPWASALGFIRLMTHRAVLVMP  60

Query  61   LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDA  120
            +  + A+ YVR W S+ NV  L  GPRHL++  GL   LGTA  LTTD  LAA  IE+  
Sbjct  61   VEPSRAVEYVRSWHSRSNVSALEPGPRHLELLDGLFAALGTAGKLTTDTHLAALAIEHQC  120

Query  121  EIHSSDTDFARFADLKWTDPLR  142
             + S+D DFARF  L+W +PL+
Sbjct  121  VLCSNDGDFARFPGLRWRNPLK  142


>gi|116748338|ref|YP_845025.1| PilT domain-containing protein [Syntrophobacter fumaroxidans 
MPOB]
 gi|116697402|gb|ABK16590.1| PIN domain family protein [Syntrophobacter fumaroxidans MPOB]
Length=144

 Score =  120 bits (301),  Expect = 6e-26, Method: Compositional matrix adjust.
 Identities = 61/141 (44%), Positives = 83/141 (59%), Gaps = 0/141 (0%)

Query  1    VIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP  60
            +I+ D+NLLLYAV    PQH R+  W +  ++G   +GL +  +  FLRI T+AR+   P
Sbjct  1    MILVDVNLLLYAVNQDLPQHARSRTWLETVLSGSESVGLPWVVIRAFLRITTNARIFERP  60

Query  61   LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDA  120
            L    A+AYV EWL+QP    +T G  H  I   LL   GT  +LTTD  +AA  IEY  
Sbjct  61   LSVERAVAYVEEWLAQPVATTVTPGKSHWMILRNLLLDSGTGGNLTTDAHIAALAIEYGH  120

Query  121  EIHSSDTDFARFADLKWTDPL  141
             ++S+D DF RF  L+  +PL
Sbjct  121  TVYSTDNDFKRFQGLRHINPL  141


>gi|297623633|ref|YP_003705067.1| PIN domain-containing protein [Truepera radiovictrix DSM 17093]
 gi|297164813|gb|ADI14524.1| PIN domain protein family protein [Truepera radiovictrix DSM 
17093]
Length=145

 Score =  112 bits (280),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 60/143 (42%), Positives = 83/143 (59%), Gaps = 0/143 (0%)

Query  1    VIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP  60
            +I+ D NLL+YA + G PQH  AHAW    ++   R+GL +P+L  FLR+ T+ RV   P
Sbjct  1    MILIDANLLIYAHVMGSPQHHAAHAWLDAQLSAGYRVGLPWPSLLAFLRLTTNPRVFERP  60

Query  61   LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDA  120
            L  A+A A V  WLS P+V L T    H  +   L+ + G  ++L  D  LAA  +E+  
Sbjct  61   LTAAEAWAQVEAWLSVPSVWLPTPTAEHPKLLRDLVTQTGATANLIPDAHLAALALEHGL  120

Query  121  EIHSSDTDFARFADLKWTDPLRE  143
             + S+D DF RF  LKW +PL E
Sbjct  121  TLCSTDGDFGRFPRLKWRNPLAE  143


>gi|116624725|ref|YP_826881.1| PilT domain-containing protein [Candidatus Solibacter usitatus 
Ellin6076]
 gi|116227887|gb|ABJ86596.1| PIN domain family protein [Candidatus Solibacter usitatus Ellin6076]
Length=142

 Score =  111 bits (277),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 55/138 (40%), Positives = 81/138 (59%), Gaps = 0/138 (0%)

Query  5    DINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAPLPTA  64
            D N+LLYAV    P H+ A  W + T++G   +G ++  +  FLR+ T   +   PL   
Sbjct  5    DANILLYAVNKDAPLHQSARQWLEKTLSGDEPLGFSWNVILAFLRLTTRPGLFRKPLSPD  64

Query  65   DAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEIHS  124
             A   V  WL++P   ++ AGPRHL+I   L+  LGTA +LT+D  L A  IE +A++ S
Sbjct  65   QAFDLVASWLAEPAAIIVHAGPRHLEIVHRLIKPLGTAGNLTSDAHLGALAIEQNAQLCS  124

Query  125  SDTDFARFADLKWTDPLR  142
             D+DFARF+ + W +PL 
Sbjct  125  CDSDFARFSGVDWLNPLE  142


>gi|308270136|emb|CBX26748.1| hypothetical protein N47_A07770 [uncultured Desulfobacterium 
sp.]
Length=143

 Score =  107 bits (267),  Expect = 6e-22, Method: Compositional matrix adjust.
 Identities = 52/141 (37%), Positives = 80/141 (57%), Gaps = 0/141 (0%)

Query  1    VIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP  60
            +I+ D N+LLYA  +  P H++A  WW D ++    + L +P L  F+RI T+ RV   P
Sbjct  1    MILVDANILLYAEDSLSPLHQQARLWWDDQLSKSEPVCLCWPVLSAFIRIGTNPRVFEHP  60

Query  61   LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDA  120
            LP   A+  V+ WL QP   ++    +H  + + +L      ++L TD  LAA  IE   
Sbjct  61   LPLEQALTRVQSWLDQPCTRVIQPTEQHWAVFMMMLKGGQAVANLVTDAHLAALAIENGC  120

Query  121  EIHSSDTDFARFADLKWTDPL  141
            ++ S+D+DF+RF  LKW +PL
Sbjct  121  DLASTDSDFSRFPKLKWINPL  141


>gi|333991903|ref|YP_004524517.1| PIN domain-containing protein family protein [Mycobacterium sp. 
JDM601]
 gi|333487871|gb|AEF37263.1| PIN domain protein family protein [Mycobacterium sp. JDM601]
Length=143

 Score =  102 bits (254),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 57/137 (42%), Positives = 79/137 (58%), Gaps = 0/137 (0%)

Query  5    DINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAPLPTA  64
            D NLLLYAV      +  A AW ++T+NG  RIGL +  +  FLRI T  RV   PLP +
Sbjct  4    DANLLLYAVDADSKHNPVAAAWLEETLNGDNRIGLPWQTIGAFLRIITHPRVTENPLPPS  63

Query  65   DAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEIHS  124
            +A +YV +WL+ P V +  A      +  G+  +   A +L  D QLAA  IE+  E+ S
Sbjct  64   EAWSYVADWLAVPVVWIPPATEATARVYAGICAQADVAGNLVPDAQLAALAIEHGVELAS  123

Query  125  SDTDFARFADLKWTDPL  141
            +D+DF RF  L+W +PL
Sbjct  124  ADSDFQRFPGLRWFNPL  140


>gi|340627115|ref|YP_004745567.1| hypothetical protein MCAN_21291 [Mycobacterium canettii CIPT 
140010059]
 gi|340005305|emb|CCC44461.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=144

 Score = 99.8 bits (247),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 53/138 (39%), Positives = 76/138 (56%), Gaps = 0/138 (0%)

Query  3    IPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAPLP  62
            I D N+LLYAV T    H+ +  W    ++G  R+G  +  L  F+R+AT   +   PLP
Sbjct  3    IVDANVLLYAVNTTSEHHKPSLRWLDGALSGADRVGFAWVPLLSFVRLATKVGLFPRPLP  62

Query  63   TADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEI  122
               AI  V +WL+ P+  L+    RH DI   +L  +GT ++L  D  LAA  +E+ A I
Sbjct  63   REAAITQVADWLAAPSAVLVNPTVRHADILARMLTYVGTGANLVNDAHLAALAVEHRASI  122

Query  123  HSSDTDFARFADLKWTDP  140
             S D+DF RFA ++W  P
Sbjct  123  VSYDSDFGRFAGVRWDQP  140


>gi|229822546|ref|YP_002884072.1| PIN domain-containing protein family protein [Beutenbergia cavernae 
DSM 12333]
 gi|229568459|gb|ACQ82310.1| PIN domain protein family protein [Beutenbergia cavernae DSM 
12333]
Length=143

 Score = 99.4 bits (246),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 58/139 (42%), Positives = 76/139 (55%), Gaps = 0/139 (0%)

Query  2    IIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAPL  61
            +I D N+LLYAV TG P HR A  W ++ ++G  R+GL +P+L  F RIA+  R  A PL
Sbjct  1    MIVDANVLLYAVDTGSPFHRAAKEWLEEALSGPARVGLPWPSLLAFQRIASHPRAAAQPL  60

Query  62   PTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAE  121
                A A++ EWL      + T G  H  I   LL       +L TD  LAA  +E+   
Sbjct  61   TPGAAWAFITEWLRADPAWIPTPGDGHAAILGRLLTAGDLRGNLVTDAHLAALALEHGVG  120

Query  122  IHSSDTDFARFADLKWTDP  140
            I S D+DFARF  L W +P
Sbjct  121  ICSFDSDFARFDGLTWHNP  139


>gi|294054235|ref|YP_003547893.1| PIN domain-containing protein family protein [Coraliomargarita 
akajimensis DSM 45221]
 gi|293613568|gb|ADE53723.1| PIN domain protein family protein [Coraliomargarita akajimensis 
DSM 45221]
Length=142

 Score = 99.0 bits (245),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 50/142 (36%), Positives = 74/142 (53%), Gaps = 0/142 (0%)

Query  1    VIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP  60
            +I+PD NLL+YA       H  A  WW+  ++G   IG+ +  +  F RI T  ++  AP
Sbjct  1    MILPDANLLIYAHDHSSRDHATAKDWWETALSGSESIGIPWIVVLAFTRILTHPQICEAP  60

Query  61   LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDA  120
            L        V +W   P V L+    R L +   LL+  G   +L+TD  +AA+  E+ A
Sbjct  61   LGVTQVRELVEQWFDSPQVRLIQTSNRALPVFFDLLEDAGMGGNLSTDALIAAHAREHSA  120

Query  121  EIHSSDTDFARFADLKWTDPLR  142
             I+S D DF RF  ++W +PLR
Sbjct  121  VIYSCDRDFDRFMGIRWVNPLR  142


>gi|289758220|ref|ZP_06517598.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|294997046|ref|ZP_06802737.1| hypothetical protein Mtub2_21708 [Mycobacterium tuberculosis 
210]
 gi|289713784|gb|EFD77796.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|326903715|gb|EGE50648.1| toxin [Mycobacterium tuberculosis W-148]
 gi|339295024|gb|AEJ47135.1| hypothetical protein CCDC5079_1945 [Mycobacterium tuberculosis 
CCDC5079]
 gi|339298648|gb|AEJ50758.1| hypothetical protein CCDC5180_1921 [Mycobacterium tuberculosis 
CCDC5180]
Length=144

 Score = 99.0 bits (245),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 52/138 (38%), Positives = 75/138 (55%), Gaps = 0/138 (0%)

Query  3    IPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAPLP  62
            I D N+LLYAV T    H+ +  W    ++G  R+G  +  L  F+R+AT   +   PLP
Sbjct  3    IVDANVLLYAVNTASEHHKPSLRWLDGALSGADRVGFAWVPLLAFVRLATKVGLFPRPLP  62

Query  63   TADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEI  122
               AI  V +WL+ P+  L+    RH DI   +L  +GT ++L  D  LAA  +E+ A I
Sbjct  63   REAAITQVADWLAAPSAVLVNPTVRHADILARMLTYVGTGANLVNDAHLAALAVEHRASI  122

Query  123  HSSDTDFARFADLKWTDP  140
             S D+DF RF  ++W  P
Sbjct  123  VSYDSDFGRFEGVRWDQP  140


>gi|15841594|ref|NP_336631.1| hypothetical protein MT2163 [Mycobacterium tuberculosis CDC1551]
 gi|13881843|gb|AAK46445.1| hypothetical protein MT2163 [Mycobacterium tuberculosis CDC1551]
Length=145

 Score = 98.6 bits (244),  Expect = 3e-19, Method: Compositional matrix adjust.
 Identities = 52/138 (38%), Positives = 75/138 (55%), Gaps = 0/138 (0%)

Query  3    IPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAPLP  62
            I D N+LLYAV T    H+ +  W    ++G  R+G  +  L  F+R+AT   +   PLP
Sbjct  4    IVDANVLLYAVNTTSEHHKPSLRWLDGALSGADRVGFAWVPLLAFVRLATKVGLFPRPLP  63

Query  63   TADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEI  122
               AI  V +WL+ P+  L+    RH DI   +L  +GT ++L  D  LAA  +E+ A I
Sbjct  64   REAAITQVADWLAAPSAVLVNPTVRHADILARMLTYVGTGANLVNDAHLAALAVEHRASI  123

Query  123  HSSDTDFARFADLKWTDP  140
             S D+DF RF  ++W  P
Sbjct  124  VSYDSDFGRFEGVRWDQP  141


>gi|307084750|ref|ZP_07493863.1| toxin [Mycobacterium tuberculosis SUMu012]
 gi|308365680|gb|EFP54531.1| toxin [Mycobacterium tuberculosis SUMu012]
Length=143

 Score = 98.6 bits (244),  Expect = 3e-19, Method: Compositional matrix adjust.
 Identities = 52/138 (38%), Positives = 75/138 (55%), Gaps = 0/138 (0%)

Query  3    IPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAPLP  62
            I D N+LLYAV T    H+ +  W    ++G  R+G  +  L  F+R+AT   +   PLP
Sbjct  3    IVDANVLLYAVNTTSEHHKPSLRWLDGALSGADRVGFAWVPLLAFVRLATKVGLFPRPLP  62

Query  63   TADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEI  122
               AI  V +WL+ P+  L+    RH DI   +L  +GT ++L  D  LAA  +E+ A I
Sbjct  63   REAAITQVADWLAAPSAVLVNPTVRHADILARMLTYVGTGANLVNDAHLAALAVEHRASI  122

Query  123  HSSDTDFARFADLKWTDP  140
             S D+DF RF  ++W  P
Sbjct  123  VSYDSDFGRFEGVRWDQP  140


>gi|15609240|ref|NP_216619.1| hypothetical protein Rv2103c [Mycobacterium tuberculosis H37Rv]
 gi|31793285|ref|NP_855778.1| hypothetical protein Mb2129c [Mycobacterium bovis AF2122/97]
 gi|121637987|ref|YP_978211.1| hypothetical protein BCG_2122c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 67 more sequence titles
 Length=144

 Score = 98.2 bits (243),  Expect = 3e-19, Method: Compositional matrix adjust.
 Identities = 52/138 (38%), Positives = 75/138 (55%), Gaps = 0/138 (0%)

Query  3    IPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAPLP  62
            I D N+LLYAV T    H+ +  W    ++G  R+G  +  L  F+R+AT   +   PLP
Sbjct  3    IVDANVLLYAVNTTSEHHKPSLRWLDGALSGADRVGFAWVPLLAFVRLATKVGLFPRPLP  62

Query  63   TADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEI  122
               AI  V +WL+ P+  L+    RH DI   +L  +GT ++L  D  LAA  +E+ A I
Sbjct  63   REAAITQVADWLAAPSAVLVNPTVRHADILARMLTYVGTGANLVNDAHLAALAVEHRASI  122

Query  123  HSSDTDFARFADLKWTDP  140
             S D+DF RF  ++W  P
Sbjct  123  VSYDSDFGRFEGVRWDQP  140


>gi|240170675|ref|ZP_04749334.1| PIN domain protein family protein [Mycobacterium kansasii ATCC 
12478]
Length=142

 Score = 93.2 bits (230),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 54/140 (39%), Positives = 77/140 (55%), Gaps = 0/140 (0%)

Query  2    IIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAPL  61
            +I D NLLLYAV      +  A +W ++ + G +R+GL +  +  FLRIAT  RV   PL
Sbjct  1    MIVDANLLLYAVDESSAHNVAAASWLEEVLAGDSRVGLPWQTIGAFLRIATHPRVAENPL  60

Query  62   PTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAE  121
                A  YV EWL+ P V +  A      +   L +++    +L  D QLAA  +E+  E
Sbjct  61   SGPAAWRYVAEWLAVPVVWIPPATETTARVYARLSEQVEITGNLVPDAQLAALAVEHGVE  120

Query  122  IHSSDTDFARFADLKWTDPL  141
            + S+DTDF RF  L+W +PL
Sbjct  121  LASADTDFMRFPGLRWMNPL  140


>gi|297623624|ref|YP_003705058.1| PIN domain-containing protein [Truepera radiovictrix DSM 17093]
 gi|297164804|gb|ADI14515.1| PIN domain protein family protein [Truepera radiovictrix DSM 
17093]
Length=144

 Score = 93.2 bits (230),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 52/141 (37%), Positives = 72/141 (52%), Gaps = 0/141 (0%)

Query  1    VIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP  60
            +I+ DIN L+YA     PQH     W +  VN     GL      GF+R+ T  RV + P
Sbjct  1    MILLDINPLVYAFRPDAPQHPAYVGWLEKLVNQDAAFGLADIVCSGFIRVVTHPRVFSPP  60

Query  61   LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDA  120
             P  DA+ Y+ +  +QPN  +L  G RH  I L L   +G   ++  D  LAA  IE  +
Sbjct  61   SPLDDALEYLEDIRAQPNCVILAPGERHWRIFLQLCHAVGAKGNVVPDAYLAALAIESGS  120

Query  121  EIHSSDTDFARFADLKWTDPL  141
            E+ ++D   ARF  L+W  PL
Sbjct  121  ELATADRGVARFPGLRWRHPL  141


>gi|289750699|ref|ZP_06510077.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289691286|gb|EFD58715.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=136

 Score = 92.4 bits (228),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 48/132 (37%), Positives = 71/132 (54%), Gaps = 0/132 (0%)

Query  9    LLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAPLPTADAIA  68
            +LYAV T    H+ +  W    ++G  R+G  +  L  F+R+AT   +   PLP   AI 
Sbjct  1    MLYAVNTTSEHHKPSLRWLDGALSGADRVGFAWVPLLAFVRLATKVGLFPRPLPREAAIT  60

Query  69   YVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEIHSSDTD  128
             V +WL+ P+  L+    RH DI   +L  +GT ++L  D  LAA  +E+ A I S D+D
Sbjct  61   QVADWLAAPSAVLVNPTVRHADILARMLTYVGTGANLVNDAHLAALAVEHRASIVSYDSD  120

Query  129  FARFADLKWTDP  140
            F RF  ++W  P
Sbjct  121  FGRFEGVRWDQP  132


>gi|145221522|ref|YP_001132200.1| PilT domain-containing protein [Mycobacterium gilvum PYR-GCK]
 gi|145214008|gb|ABP43412.1| PIN domain family protein [Mycobacterium gilvum PYR-GCK]
Length=145

 Score = 92.0 bits (227),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 47/138 (35%), Positives = 73/138 (53%), Gaps = 0/138 (0%)

Query  3    IPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAPLP  62
            I D N+LLYAV +    H  +  W    ++G+  +GL +  +  F+R+ T   +  +PL 
Sbjct  3    IVDANVLLYAVNSSSEHHDASRRWLDGALSGNDVVGLAWVPMLAFVRLTTKHGLFPSPLT  62

Query  63   TADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEI  122
              DA+A + +W S P   ++    RH D+   LL  +GT  +L  D  LAA  +E+ A I
Sbjct  63   PDDAMARITDWCSAPGAVIVNPTARHADVLATLLSDVGTGGNLVNDAHLAALALEHRARI  122

Query  123  HSSDTDFARFADLKWTDP  140
             S D DF RF+ ++W  P
Sbjct  123  VSYDNDFGRFSGVQWDVP  140


>gi|333990439|ref|YP_004523053.1| hypothetical protein JDM601_1799 [Mycobacterium sp. JDM601]
 gi|333486407|gb|AEF35799.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=143

 Score = 87.0 bits (214),  Expect = 8e-16, Method: Compositional matrix adjust.
 Identities = 49/138 (36%), Positives = 70/138 (51%), Gaps = 1/138 (0%)

Query  3    IPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAPLP  62
            I D N+LLYAV T    H  +  W    ++G   +G  +  L  F+R++T   +   PL 
Sbjct  3    IVDANVLLYAVNTAAEHHDASLRWLDRALSGADTVGFAWVPLLAFVRLSTKEGLFPHPLR  62

Query  63   TADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEI  122
              DA+  V EW +  +  ++   PRH DI  GLL ++G   +L  D  LAA  IE+   I
Sbjct  63   PEDAVDRVAEWTAASSAVVVNPTPRHADILTGLLARVGAGGNLVNDAHLAALAIEHRGGI  122

Query  123  HSSDTDFARFADLKWTDP  140
             S D DF RF  ++W  P
Sbjct  123  VSYDADFGRFG-IRWDRP  139


>gi|300780204|ref|ZP_07090060.1| PilT domain protein [Corynebacterium genitalium ATCC 33030]
 gi|300534314|gb|EFK55373.1| PilT domain protein [Corynebacterium genitalium ATCC 33030]
Length=145

 Score = 86.3 bits (212),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 50/140 (36%), Positives = 66/140 (48%), Gaps = 0/140 (0%)

Query  2    IIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAPL  61
            +I D N+L+YA          A +W    + G  R+G  +  L  F RI T+  + A PL
Sbjct  1    MIIDANVLIYASDENATHFAEASSWLDGALRGTERVGFPWICLLAFQRITTNPALFAMPL  60

Query  62   PTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAE  121
              + A  Y+  WL  PN  +   GP+H  I   L         L TD  LAA  IE+   
Sbjct  61   TPSRASDYIENWLKHPNSWVPQPGPQHASILRTLTVDSDARGTLVTDAHLAALAIEHGTS  120

Query  122  IHSSDTDFARFADLKWTDPL  141
            I S D+DFARF  L+W  PL
Sbjct  121  ICSFDSDFARFQGLRWFSPL  140


>gi|320105317|ref|YP_004180907.1| PIN domain-containing protein family protein [Terriglobus saanensis 
SP1PR4]
 gi|319923838|gb|ADV80913.1| PIN domain protein family protein [Terriglobus saanensis SP1PR4]
Length=145

 Score = 82.4 bits (202),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 49/143 (35%), Positives = 66/143 (47%), Gaps = 0/143 (0%)

Query  1    VIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP  60
            +I+ D NLL+YA     P H+R+  W +   +    + +   A+  FLRI T   +    
Sbjct  1    MILLDANLLIYAYDEAAPHHKRSSKWIERIFSSREPVLIPVAAIMAFLRIMTHQALPGPR  60

Query  61   LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDA  120
                + I  V EW S  +V +   G  H +     L      S L TD  LAA  IE  A
Sbjct  61   FSMEEGIGIVDEWFSLSHVSIAITGNEHWNYLRQTLTDGQARSSLVTDSHLAALAIENGA  120

Query  121  EIHSSDTDFARFADLKWTDPLRE  143
             + S D DFARF  L+W DPL E
Sbjct  121  TLCSVDRDFARFPGLRWVDPLTE  143


>gi|296130776|ref|YP_003638026.1| PIN domain protein family protein [Cellulomonas flavigena DSM 
20109]
 gi|296022591|gb|ADG75827.1| PIN domain protein family protein [Cellulomonas flavigena DSM 
20109]
Length=143

 Score = 77.4 bits (189),  Expect = 6e-13, Method: Compositional matrix adjust.
 Identities = 46/137 (34%), Positives = 67/137 (49%), Gaps = 0/137 (0%)

Query  1    VIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP  60
            +I+PD+N+L+ A+    P+H     W +  V+    +GLT   L G +R+ T  RV A P
Sbjct  1    MILPDVNVLVGALRADSPRHDALRRWLEAAVDAPEPLGLTDAVLGGTVRVLTHPRVFARP  60

Query  61   LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDA  120
             P   A+  V +  + P    +  G RH +I   L        +L  D Q AA  +E+ A
Sbjct  61   TPLRTALDLVGDLRAHPGTVRVAPGDRHWEIVADLCRAADARGNLVADAQHAAVAVEHGA  120

Query  121  EIHSSDTDFARFADLKW  137
               S D DFARF  L+W
Sbjct  121  TWVSQDRDFARFPGLRW  137


>gi|297567544|ref|YP_003686516.1| PIN domain-containing protein family protein [Meiothermus silvanus 
DSM 9946]
 gi|296851993|gb|ADH65008.1| PIN domain protein family protein [Meiothermus silvanus DSM 9946]
Length=143

 Score = 77.4 bits (189),  Expect = 7e-13, Method: Compositional matrix adjust.
 Identities = 50/140 (36%), Positives = 72/140 (52%), Gaps = 4/140 (2%)

Query  5    DINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIAT--SARVLAAPLP  62
            D+N+L+YA     PQH   +AW   ++     +G+        LRI T  S   LAAPL 
Sbjct  5    DVNVLIYAFRRDSPQHPACYAWLSGSLATGESVGVPSWVELAVLRINTLPSLGDLAAPL-  63

Query  63   TADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEI  122
              D +A++ E  S P+  L+  GP+HL I   L  +LG   +   D  +AA  IE+ A +
Sbjct  64   -KDVLAFLYELRSHPSYQLVEPGPKHLPIFEDLCQRLGLRGNDLNDAFIAALAIEHGATL  122

Query  123  HSSDTDFARFADLKWTDPLR  142
             S+D  FARF  ++  DPL 
Sbjct  123  VSTDRGFARFPGVRRIDPLE  142


>gi|306774366|ref|ZP_07412703.1| toxin [Mycobacterium tuberculosis SUMu001]
 gi|306974699|ref|ZP_07487360.1| toxin [Mycobacterium tuberculosis SUMu010]
 gi|307082408|ref|ZP_07491578.1| toxin [Mycobacterium tuberculosis SUMu011]
 gi|308217200|gb|EFO76599.1| toxin [Mycobacterium tuberculosis SUMu001]
 gi|308356102|gb|EFP44953.1| toxin [Mycobacterium tuberculosis SUMu010]
 gi|308360056|gb|EFP48907.1| toxin [Mycobacterium tuberculosis SUMu011]
Length=142

 Score = 75.5 bits (184),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 48/138 (35%), Positives = 67/138 (49%), Gaps = 4/138 (2%)

Query  5    DINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALF--GFLRIATSARVLAAPLP  62
            D+N+LL A     P HR    W+   +        T P L    FLR+ T+ R+   P P
Sbjct  5    DVNVLLAAHRGDHPNHRTVRPWFDRLLAADD--PFTVPNLVWASFLRLTTNRRIFEIPSP  62

Query  63   TADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEI  122
             ADA A+V    +QP+    + GPRHL +   L D+   +  L  D  LAA  +E+   +
Sbjct  63   RADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLAAIAVEHHCAV  122

Query  123  HSSDTDFARFADLKWTDP  140
             S D DFARFA ++   P
Sbjct  123  VSLDRDFARFASVRHIRP  140


>gi|253797202|ref|YP_003030203.1| toxin [Mycobacterium tuberculosis KZN 1435]
 gi|289552530|ref|ZP_06441740.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|297632757|ref|ZP_06950537.1| toxin [Mycobacterium tuberculosis KZN 4207]
 gi|297729731|ref|ZP_06958849.1| toxin [Mycobacterium tuberculosis KZN R506]
 gi|313657057|ref|ZP_07813937.1| toxin [Mycobacterium tuberculosis KZN V2475]
 gi|253318705|gb|ACT23308.1| toxin [Mycobacterium tuberculosis KZN 1435]
 gi|289437162|gb|EFD19655.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|328456989|gb|AEB02412.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
4207]
Length=142

 Score = 74.3 bits (181),  Expect = 5e-12, Method: Compositional matrix adjust.
 Identities = 47/138 (35%), Positives = 66/138 (48%), Gaps = 4/138 (2%)

Query  5    DINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALF--GFLRIATSARVLAAPLP  62
            D+N+LL A     P HR    W+   +        T P L    FLR+ T+ R+   P P
Sbjct  5    DVNVLLAAHRGDHPNHRTVRPWFDRLLAADD--PFTVPNLVWASFLRLTTNRRIFEIPSP  62

Query  63   TADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEI  122
             ADA A+V    +QP+    + GPRHL +   L D+   +  L  D  L A  +E+   +
Sbjct  63   RADAFAFVEAVTAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHCAV  122

Query  123  HSSDTDFARFADLKWTDP  140
             S D DFARFA ++   P
Sbjct  123  VSLDRDFARFASVRHIRP  140


>gi|15607418|ref|NP_214791.1| hypothetical protein Rv0277c [Mycobacterium tuberculosis H37Rv]
 gi|15839658|ref|NP_334695.1| hypothetical protein MT0289 [Mycobacterium tuberculosis CDC1551]
 gi|31791455|ref|NP_853948.1| hypothetical protein Mb0283c [Mycobacterium bovis AF2122/97]
 64 more sequence titles
 Length=142

 Score = 73.9 bits (180),  Expect = 7e-12, Method: Compositional matrix adjust.
 Identities = 47/138 (35%), Positives = 66/138 (48%), Gaps = 4/138 (2%)

Query  5    DINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALF--GFLRIATSARVLAAPLP  62
            D+N+LL A     P HR    W+   +        T P L    FLR+ T+ R+   P P
Sbjct  5    DVNVLLAAHRGDHPNHRTVRPWFDRLLAADD--PFTVPNLVWASFLRLTTNRRIFEIPSP  62

Query  63   TADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEI  122
             ADA A+V    +QP+    + GPRHL +   L D+   +  L  D  L A  +E+   +
Sbjct  63   RADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHCAV  122

Query  123  HSSDTDFARFADLKWTDP  140
             S D DFARFA ++   P
Sbjct  123  VSLDRDFARFASVRHIRP  140


>gi|340625313|ref|YP_004743765.1| hypothetical protein MCAN_02841 [Mycobacterium canettii CIPT 
140010059]
 gi|340003503|emb|CCC42624.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=142

 Score = 73.6 bits (179),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 48/138 (35%), Positives = 66/138 (48%), Gaps = 4/138 (2%)

Query  5    DINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALF--GFLRIATSARVLAAPLP  62
            D N+LL A     P HR    W+   +        T P L    FLR+ T+ R+   P P
Sbjct  5    DANVLLAAHRGDHPNHRTVRPWFDRLLAADD--PFTVPNLVWASFLRLTTNRRIFEIPSP  62

Query  63   TADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEI  122
             ADA A+V    +QP+    + GPRHL +   L D+   +  L  D  LAA  +E+   +
Sbjct  63   RADAFAFVDAVTAQPHHLPTSPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVEHHCAV  122

Query  123  HSSDTDFARFADLKWTDP  140
             S D DFARFA ++   P
Sbjct  123  VSLDRDFARFASVRHIRP  140


>gi|88811999|ref|ZP_01127252.1| hypothetical protein NB231_06401 [Nitrococcus mobilis Nb-231]
 gi|88790883|gb|EAR21997.1| hypothetical protein NB231_06401 [Nitrococcus mobilis Nb-231]
Length=145

 Score = 72.8 bits (177),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 45/143 (32%), Positives = 68/143 (48%), Gaps = 0/143 (0%)

Query  1    VIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP  60
            +I+ D+N+L+YA       H     W ++ +NG    G++   L GF+R+ T  RV   P
Sbjct  1    MILMDVNVLVYAHREDTADHLAYRDWLEEQINGLGAYGVSDLVLSGFIRVVTHPRVFERP  60

Query  61   LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDA  120
             P   A+A+V +  SQP    +  GPRH  I   L+       +L  D   AA  IE   
Sbjct  61   TPLDRALAFVHQVRSQPQAVPIRPGPRHWAIFEKLVRLSKAEGNLVPDAYHAALAIEAGC  120

Query  121  EIHSSDTDFARFADLKWTDPLRE  143
            +  ++D  F RF  L+   P R+
Sbjct  121  DWITTDKGFLRFPGLRARHPFRK  143


>gi|15607889|ref|NP_215263.1| hypothetical protein Rv0749 [Mycobacterium tuberculosis H37Rv]
 gi|15840162|ref|NP_335199.1| hypothetical protein MT0773 [Mycobacterium tuberculosis CDC1551]
 gi|31791935|ref|NP_854428.1| hypothetical protein Mb0770 [Mycobacterium bovis AF2122/97]
 64 more sequence titles
 Length=142

 Score = 70.9 bits (172),  Expect = 5e-11, Method: Compositional matrix adjust.
 Identities = 47/138 (35%), Positives = 65/138 (48%), Gaps = 4/138 (2%)

Query  5    DINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALF--GFLRIATSARVLAAPLP  62
            D N+LL A     P HR    W+   +        T P L    FLR+AT+ R+   P P
Sbjct  5    DANVLLAAHRGDHPNHRTVRPWFDRLLAADD--PFTVPNLVWASFLRLATNRRIFEIPSP  62

Query  63   TADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEI  122
             A+A A+V    +QP+      GPRHL +   L D+   +  L  D  LAA  + +   +
Sbjct  63   RAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHCAV  122

Query  123  HSSDTDFARFADLKWTDP  140
             S D DFARFA ++   P
Sbjct  123  VSLDRDFARFASVRHIRP  140


>gi|121636671|ref|YP_976894.1| hypothetical protein BCG_0799 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224989143|ref|YP_002643830.1| hypothetical protein JTY_0769 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|289442150|ref|ZP_06431894.1| toxin [Mycobacterium tuberculosis T46]
 10 more sequence titles
 Length=142

 Score = 70.9 bits (172),  Expect = 6e-11, Method: Compositional matrix adjust.
 Identities = 47/138 (35%), Positives = 65/138 (48%), Gaps = 4/138 (2%)

Query  5    DINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALF--GFLRIATSARVLAAPLP  62
            D N+LL A     P HR    W+   +        T P L    FLR+AT+ R+   P P
Sbjct  5    DANVLLAAHRGDHPNHRTVRPWFDRLLAADD--PFTVPNLVWASFLRLATNRRIFEIPSP  62

Query  63   TADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEI  122
             A+A A+V    +QP+      GPRHL +   L D+   +  L  D  LAA  + +   +
Sbjct  63   RAEAFAFVEAVTAQPHHLPTNPGPRHLVLLRKLCDEADASGDLIPDAVLAAIAVGHHCAV  122

Query  123  HSSDTDFARFADLKWTDP  140
             S D DFARFA ++   P
Sbjct  123  VSLDRDFARFASVRHIRP  140


>gi|340625767|ref|YP_004744219.1| hypothetical protein MCAN_07521 [Mycobacterium canettii CIPT 
140010059]
 gi|340003957|emb|CCC43092.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=142

 Score = 69.3 bits (168),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 46/138 (34%), Positives = 64/138 (47%), Gaps = 4/138 (2%)

Query  5    DINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALF--GFLRIATSARVLAAPLP  62
            D N+LL A     P HR    W+   +        T P L    FLR+AT+ R+   P P
Sbjct  5    DANVLLAAHRGDHPNHRTVRPWFDRLLAADD--PFTVPNLVWASFLRLATNRRIFEIPSP  62

Query  63   TADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEI  122
             A A A++    +QP+      GPRHL +   L D+   +  L  D  LAA  +E+   +
Sbjct  63   RAAAFAFIDAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVEHHCAV  122

Query  123  HSSDTDFARFADLKWTDP  140
             S D DFARF  ++   P
Sbjct  123  VSLDRDFARFTSVRHIRP  140


>gi|258593476|emb|CBE69815.1| conserved protein of unknown function [NC10 bacterium 'Dutch 
sediment']
Length=144

 Score = 69.3 bits (168),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 48/146 (33%), Positives = 70/146 (48%), Gaps = 8/146 (5%)

Query  1    VIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP  60
            + + D N+L+YA     P HRR HA  QD     +   LT+  L+ FLR+ T  RV   P
Sbjct  1    MFVSDTNVLIYAADADSPFHRRCHARLQDWRGQTSAWYLTWGILYEFLRVTTHPRVFRQP  60

Query  61   LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKL----GTASH-LTTDVQLAAYG  115
             P A A  ++   L+ P + LL    RH  +   +  +L    G   H   T + +  +G
Sbjct  61   WPAARAWEFIEAVLASPGLSLLLPTDRHATVVAEVFGELPHLAGNVIHDAHTAILMREHG  120

Query  116  IEYDAEIHSSDTDFARFADLKWTDPL  141
            I     I++ DTDF RF  L+  DP+
Sbjct  121  IR---RIYTRDTDFHRFPFLEPIDPM  143


>gi|322435687|ref|YP_004217899.1| PIN domain protein family protein [Acidobacterium sp. MP5ACTX9]
 gi|321163414|gb|ADW69119.1| PIN domain protein family protein [Acidobacterium sp. MP5ACTX9]
Length=143

 Score = 68.2 bits (165),  Expect = 4e-10, Method: Compositional matrix adjust.
 Identities = 50/145 (35%), Positives = 73/145 (51%), Gaps = 7/145 (4%)

Query  1    VIIPDINLLLYAVITGFPQHRRAHAW----WQDTVNGHTRIGLTYPALFGFLRIATSARV  56
            +I+ D NLLLYA       H+ A ++    + DT      IG+       FLR+ T+  V
Sbjct  1    MIVLDANLLLYAYTARSSFHQPARSYLDHIFSDTSES---IGIPIQCATAFLRLITNPAV  57

Query  57   LAAPLPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGI  116
              A +   DAIA V EW + P+V +L  G  H      +         L  D  +AA+ +
Sbjct  58   TGARIAMDDAIARVEEWQALPHVRILYPGEEHWQFLKTVTRNGHATGDLIADAAIAAFAL  117

Query  117  EYDAEIHSSDTDFARFADLKWTDPL  141
            EY A +HS+D DFARF+ ++W +PL
Sbjct  118  EYGAVVHSNDRDFARFSSIRWHNPL  142


>gi|258593480|emb|CBE69819.1| Conserved membrane protein [NC10 bacterium 'Dutch sediment']
Length=144

 Score = 66.6 bits (161),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 43/138 (32%), Positives = 66/138 (48%), Gaps = 1/138 (0%)

Query  5    DINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAPLPTA  64
            D+N+LLYA  T  P+H  A  + ++         + +  L  +LRIAT  R+ A PL  +
Sbjct  6    DVNVLLYASDTSSPKHPEAIRFMEERAFDPDLFCIAWSTLIAYLRIATYPRIFARPLSPS  65

Query  65   DAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYD-AEIH  123
            DA+  V   LS P V  L+ G   LD   G+        +L  D  LA    ++    ++
Sbjct  66   DALGNVESLLSLPRVRTLSEGEDFLDGYRGVTAHFPVRGNLVPDAHLATLLQQHGVGRLY  125

Query  124  SSDTDFARFADLKWTDPL  141
            ++D DF +F  L+  DP 
Sbjct  126  TADRDFRKFDFLEVVDPF  143


>gi|289744472|ref|ZP_06503850.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289685000|gb|EFD52488.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
Length=131

 Score = 65.9 bits (159),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 42/125 (34%), Positives = 59/125 (48%), Gaps = 4/125 (3%)

Query  18   PQHRRAHAWWQDTVNGHTRIGLTYPALF--GFLRIATSARVLAAPLPTADAIAYVREWLS  75
            P HR    W+   +        T P L    FLR+AT+ R+   P P A+A A+V    +
Sbjct  7    PNHRTVRPWFDRLLAADD--PFTVPNLVWASFLRLATNRRIFEIPSPRAEAFAFVEAVTA  64

Query  76   QPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEIHSSDTDFARFADL  135
            QP+      GPRHL +   L D+   +  L  D  LAA  + +   + S D DFARFA +
Sbjct  65   QPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHCAVVSLDRDFARFASV  124

Query  136  KWTDP  140
            +   P
Sbjct  125  RHIRP  129


>gi|340627865|ref|YP_004746317.1| hypothetical protein MCAN_28941 [Mycobacterium canettii CIPT 
140010059]
 gi|157382523|gb|ABV48756.1| Rv2872 [Mycobacterium canettii]
 gi|340006055|emb|CCC45225.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=147

 Score = 65.9 bits (159),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 44/141 (32%), Positives = 62/141 (44%), Gaps = 0/141 (0%)

Query  1    VIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP  60
            ++  D+N+L+YA      +H       +   N    +GL    L GF+R+ T+ RV   P
Sbjct  1    MLCVDVNVLVYAHRADLREHTDYRGLLERLANDDEPLGLPDSVLAGFIRVVTNRRVFTEP  60

Query  61   LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDA  120
                DA   V   L+ P    L  G RH      L   +    +   D  LAAY +E +A
Sbjct  61   TSPQDAWQAVDALLAAPAAMRLRPGERHWMAFRQLASDVDANGNDIADAHLAAYALENNA  120

Query  121  EIHSSDTDFARFADLKWTDPL  141
               S+D  FARF  L+W  PL
Sbjct  121  TWLSADRGFARFRRLRWRHPL  141


>gi|121638754|ref|YP_978978.1| hypothetical protein BCG_2894 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224991246|ref|YP_002645935.1| hypothetical protein JTY_2889 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|121494402|emb|CAL72883.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224774361|dbj|BAH27167.1| hypothetical protein JTY_2889 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|341602792|emb|CCC65470.1| conserved hypothetical protein [Mycobacterium bovis BCG str. 
Moreau RDJ]
Length=147

 Score = 65.9 bits (159),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 44/141 (32%), Positives = 62/141 (44%), Gaps = 0/141 (0%)

Query  1    VIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP  60
            ++  D+N+L+YA      +H       +   N    +GL    L GF+R+ T+ RV   P
Sbjct  1    MLCVDVNVLVYAHRADLREHADYRGLLERLANDDEPLGLPDSVLAGFIRVVTNRRVFTEP  60

Query  61   LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDA  120
                DA   V   L+ P    L  G RH      L   +    +   D  LAAY +E +A
Sbjct  61   TSPQDAWQAVDTLLAAPAAMRLRPGERHWMAFRQLASDVDANGNDIADAHLAAYALENNA  120

Query  121  EIHSSDTDFARFADLKWTDPL  141
               S+D  FARF  L+W  PL
Sbjct  121  TWLSADRGFARFRRLRWRHPL  141


>gi|15610009|ref|NP_217388.1| hypothetical protein Rv2872 [Mycobacterium tuberculosis H37Rv]
 gi|15842413|ref|NP_337450.1| hypothetical protein MT2939 [Mycobacterium tuberculosis CDC1551]
 gi|31794049|ref|NP_856542.1| hypothetical protein Mb2897 [Mycobacterium bovis AF2122/97]
 75 more sequence titles
 Length=147

 Score = 65.5 bits (158),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 44/141 (32%), Positives = 62/141 (44%), Gaps = 0/141 (0%)

Query  1    VIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP  60
            ++  D+N+L+YA      +H       +   N    +GL    L GF+R+ T+ RV   P
Sbjct  1    MLCVDVNVLVYAHRADLREHADYRGLLERLANDDEPLGLPDSVLAGFIRVVTNRRVFTEP  60

Query  61   LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDA  120
                DA   V   L+ P    L  G RH      L   +    +   D  LAAY +E +A
Sbjct  61   TSPQDAWQAVDALLAAPAAMRLRPGERHWMAFRQLASDVDANGNDIADAHLAAYALENNA  120

Query  121  EIHSSDTDFARFADLKWTDPL  141
               S+D  FARF  L+W  PL
Sbjct  121  TWLSADRGFARFRRLRWRHPL  141


>gi|289756836|ref|ZP_06516214.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289712400|gb|EFD76412.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
Length=104

 Score = 63.9 bits (154),  Expect = 7e-09, Method: Compositional matrix adjust.
 Identities = 35/95 (37%), Positives = 50/95 (53%), Gaps = 0/95 (0%)

Query  46   GFLRIATSARVLAAPLPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHL  105
             FLR+AT+ R+   P P A+A A+V    +QP+      GPRHL +   L D+   +  L
Sbjct  8    SFLRLATNRRIFEIPSPRAEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDL  67

Query  106  TTDVQLAAYGIEYDAEIHSSDTDFARFADLKWTDP  140
              D  LAA  + +   + S D DFARFA ++   P
Sbjct  68   IPDAVLAAIAVGHHCAVVSLDRDFARFASVRHIRP  102


>gi|313835966|gb|EFS73680.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes HL037PA2]
 gi|314927191|gb|EFS91022.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes HL044PA1]
 gi|314970722|gb|EFT14820.1| toxin-antitoxin system, toxin component, PIN family [Propionibacterium 
acnes HL037PA3]
Length=116

 Score = 62.8 bits (151),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 40/114 (36%), Positives = 57/114 (50%), Gaps = 2/114 (1%)

Query  8    LLLYAVITGFPQHRRAHAWWQDTVNGHTR-IGLTYPALFGFLRIATSARVLAAPLPTADA  66
            +L+YAV T    H+ +  W  + + G TR IG+ + +L GF+RI+T  R+ A PL    A
Sbjct  1    MLVYAVNTDAQYHKASRVWLLEGLRGSTRVIGMPWASLLGFVRISTHPRIFANPLEAEQA  60

Query  67   IAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDA  120
            I+ V  WLS P V  L+  PR            G  SH    +  A +GI  D+
Sbjct  61   ISVVNAWLSYPRVVTLSL-PRLAPCGSARGIGHGWKSHQRCPLGCAGFGIRRDS  113


>gi|302542963|ref|ZP_07295305.1| putative toxin-antitoxin system, toxin component, PIN family 
[Streptomyces hygroscopicus ATCC 53653]
 gi|302460581|gb|EFL23674.1| putative toxin-antitoxin system, toxin component, PIN family 
[Streptomyces himastatinicus ATCC 53653]
Length=144

 Score = 59.7 bits (143),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 44/142 (31%), Positives = 64/142 (46%), Gaps = 1/142 (0%)

Query  1    VIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP  60
            +I  D N+L+YA  +  P H  A A  +          L +P L  F  IAT  R+   P
Sbjct  1    MIAVDTNILVYAHRSDSPFHSAAAAQIKGLAEARAPWALPWPCLHEFFSIATHPRIYQPP  60

Query  61   LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDA  120
                 AIA +  WLS P+V LL+    +      +L+    A  +  D ++AA       
Sbjct  61   STAEQAIAQIDAWLSSPSVVLLSEADTYWPTLRQMLEDGKVAGPMVHDGRIAALCANSGV  120

Query  121  -EIHSSDTDFARFADLKWTDPL  141
             E+ S+D DF+RF  L   +PL
Sbjct  121  RELWSADRDFSRFPALTTRNPL  142


>gi|240171734|ref|ZP_04750393.1| hypothetical protein MkanA1_20640 [Mycobacterium kansasii ATCC 
12478]
 gi|157382510|gb|ABV48746.1| Rv2872 [Mycobacterium kansasii ATCC 12478]
Length=143

 Score = 53.5 bits (127),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 43/137 (32%), Positives = 62/137 (46%), Gaps = 0/137 (0%)

Query  5    DINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAPLPTA  64
            D+N+L+ A      +H       +   NG   +GL    L GF+R+ T+ R+   P    
Sbjct  5    DVNVLVNAHRADLREHPNYRDVLERLANGDEPLGLPDSVLAGFVRVVTNRRIFVEPTSQP  64

Query  65   DAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEIHS  124
            DA   V   L+ P    L  G RH  +   L   +  + +   D  LAAY +E +A   S
Sbjct  65   DAWQAVDALLAAPAAIRLKPGERHWTLFRQLAADIDASGNDIADAYLAAYALENNATWVS  124

Query  125  SDTDFARFADLKWTDPL  141
            +D  FARF  L+W  PL
Sbjct  125  ADRGFARFGRLRWRHPL  141


>gi|340628670|ref|YP_004747122.1| hypothetical protein MCAN_37181 [Mycobacterium canettii CIPT 
140010059]
 gi|340006860|emb|CCC46049.1| putative conserved membrane protein [Mycobacterium canettii CIPT 
140010059]
Length=145

 Score = 51.6 bits (122),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 37/141 (27%), Positives = 65/141 (47%), Gaps = 7/141 (4%)

Query  5    DINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAPLPTA  64
            D+++L++A     P H +A    +  + G   + L +P   G+LR+ T   +L APL   
Sbjct  6    DVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPLAPE  65

Query  65   DAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAA----YGIEYDA  120
             A+  + ++ S+P+V  +        +   + D +    +L  D  L A    +GI   A
Sbjct  66   VAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGI---A  122

Query  121  EIHSSDTDFARFADLKWTDPL  141
             I S D DF +F  ++  DP 
Sbjct  123  TIWSHDRDFRKFEGIRIRDPF  143


>gi|15610833|ref|NP_218214.1| hypothetical protein Rv3697c [Mycobacterium tuberculosis H37Rv]
 gi|15843315|ref|NP_338352.1| hypothetical protein MT3799 [Mycobacterium tuberculosis CDC1551]
 gi|148663560|ref|YP_001285083.1| hypothetical protein MRA_3732 [Mycobacterium tuberculosis H37Ra]
 62 more sequence titles
 Length=145

 Score = 51.6 bits (122),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 37/141 (27%), Positives = 65/141 (47%), Gaps = 7/141 (4%)

Query  5    DINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAPLPTA  64
            D+++L++A     P H +A    +  + G   + L +P   G+LR+ T   +L APL   
Sbjct  6    DVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPLAPE  65

Query  65   DAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAA----YGIEYDA  120
             A+  + ++ S+P+V  +        +   + D +    +L  D  L A    +GI   A
Sbjct  66   VAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGI---A  122

Query  121  EIHSSDTDFARFADLKWTDPL  141
             I S D DF +F  ++  DP 
Sbjct  123  TIWSHDRDFRKFEGIRIRDPF  143


>gi|258593410|emb|CBE69749.1| conserved protein of unknown function [NC10 bacterium 'Dutch 
sediment']
Length=144

 Score = 50.4 bits (119),  Expect = 9e-05, Method: Compositional matrix adjust.
 Identities = 44/147 (30%), Positives = 63/147 (43%), Gaps = 7/147 (4%)

Query  1    VIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAP  60
            +I  D NLL+YA     P H  A+A   +         + +P L  FL I T   + A  
Sbjct  1    MIAVDTNLLVYAHREDSPWHTAAYARIAELAESRAPWAIPWPCLHEFLAIVTHPTIYAPA  60

Query  61   LPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAA----YGI  116
             P A A+  V  WL  P++ LLT    +       + K   A     D  +AA    +G+
Sbjct  61   TPLAIALDQVDAWLESPSLTLLTEMSGYWIQLRHAIQKGQIAGPQVHDAHIAALCRLHGV  120

Query  117  EYDAEIHSSDTDFARFADLKWTDPLRE  143
                E+ ++D  F RF DL   +PL E
Sbjct  121  R---ELWTADRHFGRFPDLPVRNPLVE  144


>gi|160898241|ref|YP_001563823.1| PilT domain-containing protein [Delftia acidovorans SPH-1]
 gi|160363825|gb|ABX35438.1| PIN domain protein family protein [Delftia acidovorans SPH-1]
Length=145

 Score = 50.1 bits (118),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 36/134 (27%), Positives = 59/134 (45%), Gaps = 4/134 (2%)

Query  2    IIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTR---IGLTYPALFGFLRIATSARVLA  58
            + PD+NLL+ A  +  P H  A  W +  +   ++   + L    +  FLR+ T  ++  
Sbjct  1    MTPDVNLLVAASRSDHPHHSVARDWLEQAMADASQGVLLKLQPMVVASFLRLVTHPKIFV  60

Query  59   APLPTADAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEY  118
             P P A+A+ ++   L+ P V+    G     +     DK   A++   D  LAA  I  
Sbjct  61   NPTPMAEALRFIDALLASPGVEQAVLGAEWPALRQLCADK-ALAANDVPDAWLAAAAIHQ  119

Query  119  DAEIHSSDTDFARF  132
               + S D DF R 
Sbjct  120  GEHVVSFDADFKRL  133



Lambda     K      H
   0.323    0.138    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 129250525032


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40