BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1249c
Length=262
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608389|ref|NP_215765.1| hypothetical protein Rv1249c [Mycob... 511 3e-143
gi|254364148|ref|ZP_04980194.1| hypothetical membrane protein [M... 511 6e-143
gi|31792442|ref|NP_854935.1| hypothetical protein Mb1281c [Mycob... 510 8e-143
gi|339631316|ref|YP_004722958.1| hypothetical protein MAF_12680 ... 509 1e-142
gi|289446840|ref|ZP_06436584.1| membrane protein [Mycobacterium ... 508 3e-142
gi|340626262|ref|YP_004744714.1| hypothetical protein MCAN_12631... 508 4e-142
gi|289442684|ref|ZP_06432428.1| membrane protein [Mycobacterium ... 507 7e-142
gi|289757347|ref|ZP_06516725.1| LOW QUALITY PROTEIN: conserved h... 503 1e-140
gi|308399293|ref|ZP_07492922.2| membrane protein [Mycobacterium ... 439 2e-121
gi|240172272|ref|ZP_04750931.1| hypothetical protein MkanA1_2335... 347 1e-93
gi|183984165|ref|YP_001852456.1| hypothetical protein MMAR_4193 ... 327 2e-87
gi|118619604|ref|YP_907936.1| hypothetical protein MUL_4499 [Myc... 317 1e-84
gi|342862126|ref|ZP_08718769.1| hypothetical protein MCOL_24666 ... 297 1e-78
gi|296170151|ref|ZP_06851748.1| conserved hypothetical protein [... 283 1e-74
gi|118466948|ref|YP_880629.1| hypothetical protein MAV_1386 [Myc... 282 4e-74
gi|254774266|ref|ZP_05215782.1| hypothetical protein MaviaA2_062... 281 5e-74
gi|118473049|ref|YP_889298.1| hypothetical protein MSMEG_5048 [M... 281 5e-74
gi|41408633|ref|NP_961469.1| hypothetical protein MAP2535 [Mycob... 280 1e-73
gi|15827540|ref|NP_301803.1| hypothetical protein ML1096 [Mycoba... 280 2e-73
gi|120405428|ref|YP_955257.1| hypothetical protein Mvan_4476 [My... 278 7e-73
gi|126436561|ref|YP_001072252.1| hypothetical protein Mjls_3986 ... 276 2e-72
gi|108800936|ref|YP_641133.1| hypothetical protein Mmcs_3972 [My... 275 4e-72
gi|333989857|ref|YP_004522471.1| hypothetical protein JDM601_121... 271 7e-71
gi|254821722|ref|ZP_05226723.1| hypothetical protein MintA_17442... 267 1e-69
gi|145222807|ref|YP_001133485.1| hypothetical protein Mflv_2219 ... 265 5e-69
gi|169628485|ref|YP_001702134.1| hypothetical protein MAB_1394c ... 216 3e-54
gi|226307605|ref|YP_002767565.1| hypothetical protein RER_41180 ... 180 2e-43
gi|229493780|ref|ZP_04387558.1| conserved hypothetical protein [... 179 3e-43
gi|111022980|ref|YP_705952.1| hypothetical protein RHA1_ro06017 ... 168 6e-40
gi|325676636|ref|ZP_08156313.1| hypothetical protein HMPREF0724_... 167 1e-39
gi|312138905|ref|YP_004006241.1| hypothetical protein REQ_14780 ... 167 2e-39
gi|333920979|ref|YP_004494560.1| hypothetical protein AS9A_3318 ... 164 9e-39
gi|226365485|ref|YP_002783268.1| hypothetical protein ROP_60760 ... 162 5e-38
gi|54026664|ref|YP_120906.1| hypothetical protein nfa46910 [Noca... 161 7e-38
gi|319950434|ref|ZP_08024349.1| hypothetical protein ES5_12670 [... 150 2e-34
gi|262201825|ref|YP_003273033.1| hypothetical protein Gbro_1885 ... 146 2e-33
gi|296138939|ref|YP_003646182.1| hypothetical protein Tpau_1212 ... 146 3e-33
gi|50955013|ref|YP_062301.1| hypothetical protein Lxx13700 [Leif... 145 5e-33
gi|343928042|ref|ZP_08767507.1| hypothetical protein GOALK_100_0... 143 3e-32
gi|163841859|ref|YP_001626264.1| lactam utilization protein LAMB... 142 4e-32
gi|326382059|ref|ZP_08203752.1| hypothetical protein SCNU_03907 ... 142 5e-32
gi|25027749|ref|NP_737803.1| hypothetical protein CE1193 [Coryne... 132 4e-29
gi|325961880|ref|YP_004239786.1| hypothetical protein Asphe3_043... 129 4e-28
gi|19552357|ref|NP_600359.1| hypothetical protein NCgl1086 [Cory... 127 2e-27
gi|145295274|ref|YP_001138095.1| hypothetical protein cgR_1215 [... 125 7e-27
gi|220911319|ref|YP_002486628.1| hypothetical protein Achl_0540 ... 125 8e-27
gi|260905855|ref|ZP_05914177.1| hypothetical protein BlinB_11019... 124 1e-26
gi|88856288|ref|ZP_01130947.1| hypothetical protein A20C1_00070 ... 124 1e-26
gi|288920034|ref|ZP_06414354.1| stress protein [Frankia sp. EUN1... 124 2e-26
gi|325068282|ref|ZP_08126955.1| hypothetical protein AoriK_10686... 122 5e-26
>gi|15608389|ref|NP_215765.1| hypothetical protein Rv1249c [Mycobacterium tuberculosis H37Rv]
gi|15840694|ref|NP_335731.1| hypothetical protein MT1287 [Mycobacterium tuberculosis CDC1551]
gi|148661036|ref|YP_001282559.1| hypothetical protein MRA_1257 [Mycobacterium tuberculosis H37Ra]
55 more sequence titles
Length=262
Score = 511 bits (1317), Expect = 3e-143, Method: Compositional matrix adjust.
Identities = 262/262 (100%), Positives = 262/262 (100%), Gaps = 0/262 (0%)
Query 1 MSARRIRSWKRFDNRSANAAEPDPQLAGTGGRPKVSTRALAQVIERSSRIQGPAAQAYVA 60
MSARRIRSWKRFDNRSANAAEPDPQLAGTGGRPKVSTRALAQVIERSSRIQGPAAQAYVA
Sbjct 1 MSARRIRSWKRFDNRSANAAEPDPQLAGTGGRPKVSTRALAQVIERSSRIQGPAAQAYVA 60
Query 61 RLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVGAAATLPGIGTLAAWFAAAGEVVVFLE 120
RLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVGAAATLPGIGTLAAWFAAAGEVVVFLE
Sbjct 61 RLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVGAAATLPGIGTLAAWFAAAGEVVVFLE 120
Query 121 ATALFVLALASVHAIPLDHRERRRALVLAVLVGDNTTAVADLLGPGRTSGGWVSETMASL 180
ATALFVLALASVHAIPLDHRERRRALVLAVLVGDNTTAVADLLGPGRTSGGWVSETMASL
Sbjct 121 ATALFVLALASVHAIPLDHRERRRALVLAVLVGDNTTAVADLLGPGRTSGGWVSETMASL 180
Query 181 PLPAISSLNSRMLKYVVKRFALKRGALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARSA 240
PLPAISSLNSRMLKYVVKRFALKRGALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARSA
Sbjct 181 PLPAISSLNSRMLKYVVKRFALKRGALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARSA 240
Query 241 FGTPPARWPVTLHVLPTVRDAS 262
FGTPPARWPVTLHVLPTVRDAS
Sbjct 241 FGTPPARWPVTLHVLPTVRDAS 262
>gi|254364148|ref|ZP_04980194.1| hypothetical membrane protein [Mycobacterium tuberculosis str.
Haarlem]
gi|134149662|gb|EBA41707.1| hypothetical membrane protein [Mycobacterium tuberculosis str.
Haarlem]
Length=262
Score = 511 bits (1315), Expect = 6e-143, Method: Compositional matrix adjust.
Identities = 261/262 (99%), Positives = 262/262 (100%), Gaps = 0/262 (0%)
Query 1 MSARRIRSWKRFDNRSANAAEPDPQLAGTGGRPKVSTRALAQVIERSSRIQGPAAQAYVA 60
MSARRIRSWKRFDNRSANAAEPDPQLAGTGGRPKVSTRALAQVIERSSRIQGPAAQAYVA
Sbjct 1 MSARRIRSWKRFDNRSANAAEPDPQLAGTGGRPKVSTRALAQVIERSSRIQGPAAQAYVA 60
Query 61 RLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVGAAATLPGIGTLAAWFAAAGEVVVFLE 120
RLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVGAA+TLPGIGTLAAWFAAAGEVVVFLE
Sbjct 61 RLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVGAASTLPGIGTLAAWFAAAGEVVVFLE 120
Query 121 ATALFVLALASVHAIPLDHRERRRALVLAVLVGDNTTAVADLLGPGRTSGGWVSETMASL 180
ATALFVLALASVHAIPLDHRERRRALVLAVLVGDNTTAVADLLGPGRTSGGWVSETMASL
Sbjct 121 ATALFVLALASVHAIPLDHRERRRALVLAVLVGDNTTAVADLLGPGRTSGGWVSETMASL 180
Query 181 PLPAISSLNSRMLKYVVKRFALKRGALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARSA 240
PLPAISSLNSRMLKYVVKRFALKRGALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARSA
Sbjct 181 PLPAISSLNSRMLKYVVKRFALKRGALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARSA 240
Query 241 FGTPPARWPVTLHVLPTVRDAS 262
FGTPPARWPVTLHVLPTVRDAS
Sbjct 241 FGTPPARWPVTLHVLPTVRDAS 262
>gi|31792442|ref|NP_854935.1| hypothetical protein Mb1281c [Mycobacterium bovis AF2122/97]
gi|121637178|ref|YP_977401.1| hypothetical protein BCG_1309c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224989653|ref|YP_002644340.1| hypothetical protein JTY_1284 [Mycobacterium bovis BCG str. Tokyo
172]
gi|31618031|emb|CAD94142.1| POSSIBLE MEMBRANE PROTEIN [Mycobacterium bovis AF2122/97]
gi|121492825|emb|CAL71296.1| Possible membrane protein [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224772766|dbj|BAH25572.1| hypothetical protein JTY_1284 [Mycobacterium bovis BCG str. Tokyo
172]
gi|341601196|emb|CCC63869.1| possible membrane protein [Mycobacterium bovis BCG str. Moreau
RDJ]
Length=262
Score = 510 bits (1313), Expect = 8e-143, Method: Compositional matrix adjust.
Identities = 261/262 (99%), Positives = 261/262 (99%), Gaps = 0/262 (0%)
Query 1 MSARRIRSWKRFDNRSANAAEPDPQLAGTGGRPKVSTRALAQVIERSSRIQGPAAQAYVA 60
MSARRIRSWKRFDNRSANAAEPDPQLAGTGGRPKVSTRALAQVIERSSRIQGPAAQAYVA
Sbjct 1 MSARRIRSWKRFDNRSANAAEPDPQLAGTGGRPKVSTRALAQVIERSSRIQGPAAQAYVA 60
Query 61 RLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVGAAATLPGIGTLAAWFAAAGEVVVFLE 120
RLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVG AATLPGIGTLAAWFAAAGEVVVFLE
Sbjct 61 RLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVGTAATLPGIGTLAAWFAAAGEVVVFLE 120
Query 121 ATALFVLALASVHAIPLDHRERRRALVLAVLVGDNTTAVADLLGPGRTSGGWVSETMASL 180
ATALFVLALASVHAIPLDHRERRRALVLAVLVGDNTTAVADLLGPGRTSGGWVSETMASL
Sbjct 121 ATALFVLALASVHAIPLDHRERRRALVLAVLVGDNTTAVADLLGPGRTSGGWVSETMASL 180
Query 181 PLPAISSLNSRMLKYVVKRFALKRGALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARSA 240
PLPAISSLNSRMLKYVVKRFALKRGALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARSA
Sbjct 181 PLPAISSLNSRMLKYVVKRFALKRGALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARSA 240
Query 241 FGTPPARWPVTLHVLPTVRDAS 262
FGTPPARWPVTLHVLPTVRDAS
Sbjct 241 FGTPPARWPVTLHVLPTVRDAS 262
>gi|339631316|ref|YP_004722958.1| hypothetical protein MAF_12680 [Mycobacterium africanum GM041182]
gi|339330672|emb|CCC26340.1| putative membrane protein [Mycobacterium africanum GM041182]
Length=262
Score = 509 bits (1311), Expect = 1e-142, Method: Compositional matrix adjust.
Identities = 261/262 (99%), Positives = 261/262 (99%), Gaps = 0/262 (0%)
Query 1 MSARRIRSWKRFDNRSANAAEPDPQLAGTGGRPKVSTRALAQVIERSSRIQGPAAQAYVA 60
MSARRIRSWKRFDNRSANAAEPDPQLAGTGGRPKVSTRALAQVIERSSRIQGPAAQAYVA
Sbjct 1 MSARRIRSWKRFDNRSANAAEPDPQLAGTGGRPKVSTRALAQVIERSSRIQGPAAQAYVA 60
Query 61 RLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVGAAATLPGIGTLAAWFAAAGEVVVFLE 120
RLR AHPGASPAKIVAKLEKRFLSVVTASGAAVGAAATLPGIGTLAAWFAAAGEVVVFLE
Sbjct 61 RLRHAHPGASPAKIVAKLEKRFLSVVTASGAAVGAAATLPGIGTLAAWFAAAGEVVVFLE 120
Query 121 ATALFVLALASVHAIPLDHRERRRALVLAVLVGDNTTAVADLLGPGRTSGGWVSETMASL 180
ATALFVLALASVHAIPLDHRERRRALVLAVLVGDNTTAVADLLGPGRTSGGWVSETMASL
Sbjct 121 ATALFVLALASVHAIPLDHRERRRALVLAVLVGDNTTAVADLLGPGRTSGGWVSETMASL 180
Query 181 PLPAISSLNSRMLKYVVKRFALKRGALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARSA 240
PLPAISSLNSRMLKYVVKRFALKRGALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARSA
Sbjct 181 PLPAISSLNSRMLKYVVKRFALKRGALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARSA 240
Query 241 FGTPPARWPVTLHVLPTVRDAS 262
FGTPPARWPVTLHVLPTVRDAS
Sbjct 241 FGTPPARWPVTLHVLPTVRDAS 262
>gi|289446840|ref|ZP_06436584.1| membrane protein [Mycobacterium tuberculosis CPHL_A]
gi|289419798|gb|EFD16999.1| membrane protein [Mycobacterium tuberculosis CPHL_A]
Length=262
Score = 508 bits (1309), Expect = 3e-142, Method: Compositional matrix adjust.
Identities = 261/262 (99%), Positives = 261/262 (99%), Gaps = 0/262 (0%)
Query 1 MSARRIRSWKRFDNRSANAAEPDPQLAGTGGRPKVSTRALAQVIERSSRIQGPAAQAYVA 60
MSARRIRSWKRFDNRSANAAEPDPQLAGTGGRPKVSTRALAQVIERSSRIQGPAAQAYVA
Sbjct 1 MSARRIRSWKRFDNRSANAAEPDPQLAGTGGRPKVSTRALAQVIERSSRIQGPAAQAYVA 60
Query 61 RLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVGAAATLPGIGTLAAWFAAAGEVVVFLE 120
RLRRAHPGASPAKIVAKLEKRFLS VTASGAAVGAAATLPGIGTLAAWFAAAGEVVVFLE
Sbjct 61 RLRRAHPGASPAKIVAKLEKRFLSEVTASGAAVGAAATLPGIGTLAAWFAAAGEVVVFLE 120
Query 121 ATALFVLALASVHAIPLDHRERRRALVLAVLVGDNTTAVADLLGPGRTSGGWVSETMASL 180
ATALFVLALASVHAIPLDHRERRRALVLAVLVGDNTTAVADLLGPGRTSGGWVSETMASL
Sbjct 121 ATALFVLALASVHAIPLDHRERRRALVLAVLVGDNTTAVADLLGPGRTSGGWVSETMASL 180
Query 181 PLPAISSLNSRMLKYVVKRFALKRGALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARSA 240
PLPAISSLNSRMLKYVVKRFALKRGALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARSA
Sbjct 181 PLPAISSLNSRMLKYVVKRFALKRGALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARSA 240
Query 241 FGTPPARWPVTLHVLPTVRDAS 262
FGTPPARWPVTLHVLPTVRDAS
Sbjct 241 FGTPPARWPVTLHVLPTVRDAS 262
>gi|340626262|ref|YP_004744714.1| hypothetical protein MCAN_12631 [Mycobacterium canettii CIPT
140010059]
gi|340004452|emb|CCC43595.1| putative membrane protein [Mycobacterium canettii CIPT 140010059]
Length=262
Score = 508 bits (1307), Expect = 4e-142, Method: Compositional matrix adjust.
Identities = 260/262 (99%), Positives = 261/262 (99%), Gaps = 0/262 (0%)
Query 1 MSARRIRSWKRFDNRSANAAEPDPQLAGTGGRPKVSTRALAQVIERSSRIQGPAAQAYVA 60
MSARRIRSWKRFDNRSANAAEPDPQLAGTGGRPKVSTRALAQVIERSSRIQGPAAQAYVA
Sbjct 1 MSARRIRSWKRFDNRSANAAEPDPQLAGTGGRPKVSTRALAQVIERSSRIQGPAAQAYVA 60
Query 61 RLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVGAAATLPGIGTLAAWFAAAGEVVVFLE 120
RLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVGAAATLPGIGTLAAWFAAAGEVVVFLE
Sbjct 61 RLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVGAAATLPGIGTLAAWFAAAGEVVVFLE 120
Query 121 ATALFVLALASVHAIPLDHRERRRALVLAVLVGDNTTAVADLLGPGRTSGGWVSETMASL 180
ATALFVLALASVHAIPLDHRERRRALVLAVLVGDNTTAVADLLGPGRTSG WVSETMASL
Sbjct 121 ATALFVLALASVHAIPLDHRERRRALVLAVLVGDNTTAVADLLGPGRTSGDWVSETMASL 180
Query 181 PLPAISSLNSRMLKYVVKRFALKRGALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARSA 240
PLPAIS+LNSRMLKYVVKRFALKRGALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARSA
Sbjct 181 PLPAISALNSRMLKYVVKRFALKRGALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARSA 240
Query 241 FGTPPARWPVTLHVLPTVRDAS 262
FGTPPARWPVTLHVLPTVRDAS
Sbjct 241 FGTPPARWPVTLHVLPTVRDAS 262
>gi|289442684|ref|ZP_06432428.1| membrane protein [Mycobacterium tuberculosis T46]
gi|289569254|ref|ZP_06449481.1| membrane protein [Mycobacterium tuberculosis T17]
gi|289749792|ref|ZP_06509170.1| membrane protein [Mycobacterium tuberculosis T92]
gi|289415603|gb|EFD12843.1| membrane protein [Mycobacterium tuberculosis T46]
gi|289543008|gb|EFD46656.1| membrane protein [Mycobacterium tuberculosis T17]
gi|289690379|gb|EFD57808.1| membrane protein [Mycobacterium tuberculosis T92]
Length=262
Score = 507 bits (1305), Expect = 7e-142, Method: Compositional matrix adjust.
Identities = 261/262 (99%), Positives = 261/262 (99%), Gaps = 0/262 (0%)
Query 1 MSARRIRSWKRFDNRSANAAEPDPQLAGTGGRPKVSTRALAQVIERSSRIQGPAAQAYVA 60
MSARRIRSWKRFDNRSANAAEPDPQLAGTGGRPKVSTRALAQVIERSSRIQGPAAQAYVA
Sbjct 1 MSARRIRSWKRFDNRSANAAEPDPQLAGTGGRPKVSTRALAQVIERSSRIQGPAAQAYVA 60
Query 61 RLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVGAAATLPGIGTLAAWFAAAGEVVVFLE 120
RLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVGAAATLPGIGTLAAWFAAAGEVVVFLE
Sbjct 61 RLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVGAAATLPGIGTLAAWFAAAGEVVVFLE 120
Query 121 ATALFVLALASVHAIPLDHRERRRALVLAVLVGDNTTAVADLLGPGRTSGGWVSETMASL 180
ATALFVLALASVHAIPLDHRERRRALVLAVLVGDNTTAVADLLGPGRTSGGWVSETMASL
Sbjct 121 ATALFVLALASVHAIPLDHRERRRALVLAVLVGDNTTAVADLLGPGRTSGGWVSETMASL 180
Query 181 PLPAISSLNSRMLKYVVKRFALKRGALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARSA 240
PLPAISSLNSRMLKYVVKRFALKRGALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARSA
Sbjct 181 PLPAISSLNSRMLKYVVKRFALKRGALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARSA 240
Query 241 FGTPPARWPVTLHVLPTVRDAS 262
FGTPPARWPVTLHVLPTV DAS
Sbjct 241 FGTPPARWPVTLHVLPTVWDAS 262
>gi|289757347|ref|ZP_06516725.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium
tuberculosis T85]
gi|289712911|gb|EFD76923.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium
tuberculosis T85]
Length=262
Score = 503 bits (1295), Expect = 1e-140, Method: Compositional matrix adjust.
Identities = 258/258 (100%), Positives = 258/258 (100%), Gaps = 0/258 (0%)
Query 1 MSARRIRSWKRFDNRSANAAEPDPQLAGTGGRPKVSTRALAQVIERSSRIQGPAAQAYVA 60
MSARRIRSWKRFDNRSANAAEPDPQLAGTGGRPKVSTRALAQVIERSSRIQGPAAQAYVA
Sbjct 1 MSARRIRSWKRFDNRSANAAEPDPQLAGTGGRPKVSTRALAQVIERSSRIQGPAAQAYVA 60
Query 61 RLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVGAAATLPGIGTLAAWFAAAGEVVVFLE 120
RLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVGAAATLPGIGTLAAWFAAAGEVVVFLE
Sbjct 61 RLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVGAAATLPGIGTLAAWFAAAGEVVVFLE 120
Query 121 ATALFVLALASVHAIPLDHRERRRALVLAVLVGDNTTAVADLLGPGRTSGGWVSETMASL 180
ATALFVLALASVHAIPLDHRERRRALVLAVLVGDNTTAVADLLGPGRTSGGWVSETMASL
Sbjct 121 ATALFVLALASVHAIPLDHRERRRALVLAVLVGDNTTAVADLLGPGRTSGGWVSETMASL 180
Query 181 PLPAISSLNSRMLKYVVKRFALKRGALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARSA 240
PLPAISSLNSRMLKYVVKRFALKRGALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARSA
Sbjct 181 PLPAISSLNSRMLKYVVKRFALKRGALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARSA 240
Query 241 FGTPPARWPVTLHVLPTV 258
FGTPPARWPVTLHVLPTV
Sbjct 241 FGTPPARWPVTLHVLPTV 258
>gi|308399293|ref|ZP_07492922.2| membrane protein [Mycobacterium tuberculosis SUMu012]
gi|308366526|gb|EFP55377.1| membrane protein [Mycobacterium tuberculosis SUMu012]
Length=228
Score = 439 bits (1130), Expect = 2e-121, Method: Compositional matrix adjust.
Identities = 227/228 (99%), Positives = 228/228 (100%), Gaps = 0/228 (0%)
Query 35 VSTRALAQVIERSSRIQGPAAQAYVARLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVG 94
+STRALAQVIERSSRIQGPAAQAYVARLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVG
Sbjct 1 MSTRALAQVIERSSRIQGPAAQAYVARLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVG 60
Query 95 AAATLPGIGTLAAWFAAAGEVVVFLEATALFVLALASVHAIPLDHRERRRALVLAVLVGD 154
AAATLPGIGTLAAWFAAAGEVVVFLEATALFVLALASVHAIPLDHRERRRALVLAVLVGD
Sbjct 61 AAATLPGIGTLAAWFAAAGEVVVFLEATALFVLALASVHAIPLDHRERRRALVLAVLVGD 120
Query 155 NTTAVADLLGPGRTSGGWVSETMASLPLPAISSLNSRMLKYVVKRFALKRGALMFGKLVP 214
NTTAVADLLGPGRTSGGWVSETMASLPLPAISSLNSRMLKYVVKRFALKRGALMFGKLVP
Sbjct 121 NTTAVADLLGPGRTSGGWVSETMASLPLPAISSLNSRMLKYVVKRFALKRGALMFGKLVP 180
Query 215 MGIGAIIGAIGNRLVGKKLVRNARSAFGTPPARWPVTLHVLPTVRDAS 262
MGIGAIIGAIGNRLVGKKLVRNARSAFGTPPARWPVTLHVLPTVRDAS
Sbjct 181 MGIGAIIGAIGNRLVGKKLVRNARSAFGTPPARWPVTLHVLPTVRDAS 228
>gi|240172272|ref|ZP_04750931.1| hypothetical protein MkanA1_23356 [Mycobacterium kansasii ATCC
12478]
Length=251
Score = 347 bits (890), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 202/263 (77%), Positives = 223/263 (85%), Gaps = 13/263 (4%)
Query 1 MSARRIRSWKRFDNRSANAAEPDPQLAGTGGRPKVSTRALAQVIERSSRIQGPAAQAYVA 60
MSARR KR D PD Q A TG RPK S+RALAQVIERS+ +Q PAA+AYVA
Sbjct 1 MSARRT---KRSD--------PDEQPAATG-RPKASSRALAQVIERSAHVQAPAAEAYVA 48
Query 61 RLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVGAAATLPGIGTLAAWFAAAGEVVVFLE 120
RLRRAHP A PA+IVAK+EKRF++ VTASGAA+G ATLPGIGTLAA AAAGE VFLE
Sbjct 49 RLRRAHPAAGPAEIVAKIEKRFVAAVTASGAAIGIVATLPGIGTLAALLAAAGETAVFLE 108
Query 121 ATALFVLALASVHAIPLDHRERRRALVLAVLVGDNT-TAVADLLGPGRTSGGWVSETMAS 179
ATAL VLALASV+ IPLDHRERRRALVLAVLVGDN+ +AVA+L+G GRTSGGWVSE++AS
Sbjct 109 ATALLVLALASVYGIPLDHRERRRALVLAVLVGDNSKSAVAELMGSGRTSGGWVSESVAS 168
Query 180 LPLPAISSLNSRMLKYVVKRFALKRGALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARS 239
LPLPA+S N+RM KY KRFALKRGALMFGKL+P GIGA+IGAIGNRLVGKKLVRNARS
Sbjct 169 LPLPAVSKFNTRMFKYFAKRFALKRGALMFGKLLPAGIGAVIGAIGNRLVGKKLVRNARS 228
Query 240 AFGTPPARWPVTLHVLPTVRDAS 262
AFG PPARWPVTL+VLPTVRDAS
Sbjct 229 AFGAPPARWPVTLYVLPTVRDAS 251
>gi|183984165|ref|YP_001852456.1| hypothetical protein MMAR_4193 [Mycobacterium marinum M]
gi|183177491|gb|ACC42601.1| conserved membrane protein [Mycobacterium marinum M]
Length=252
Score = 327 bits (837), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 207/263 (79%), Positives = 223/263 (85%), Gaps = 12/263 (4%)
Query 1 MSARRIRSWKRFDNRSANAAEPDPQLAGTGGRPKVSTRALAQVIERSSRIQGPAAQAYVA 60
MSARR R +EP Q G GRPK STRALAQVIERSS IQ PAA+AYVA
Sbjct 1 MSARRTRQ-----------SEPAAQPTGIMGRPKASTRALAQVIERSSHIQSPAAEAYVA 49
Query 61 RLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVGAAATLPGIGTLAAWFAAAGEVVVFLE 120
RLRRAHP ASPA+IV+K+EKRFL+VVTASGAAVGAAATLPGIGTLAA AAAGE VFLE
Sbjct 50 RLRRAHPAASPAEIVSKIEKRFLAVVTASGAAVGAAATLPGIGTLAALSAAAGETAVFLE 109
Query 121 ATALFVLALASVHAIPLDHRERRRALVLAVLVGDNT-TAVADLLGPGRTSGGWVSETMAS 179
ATAL VLALASV+ IPLDHRERRRALVLAVLVGDN+ AVA+++G GRTSG WVSE+MAS
Sbjct 110 ATALLVLALASVYDIPLDHRERRRALVLAVLVGDNSKNAVAEVIGSGRTSGVWVSESMAS 169
Query 180 LPLPAISSLNSRMLKYVVKRFALKRGALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARS 239
LPLPAIS LN+RM KY VKRFALKRG L+FGKL+P GIGAIIGAIGNRLVG+KLVRNARS
Sbjct 170 LPLPAISKLNTRMFKYFVKRFALKRGVLLFGKLLPAGIGAIIGAIGNRLVGRKLVRNARS 229
Query 240 AFGTPPARWPVTLHVLPTVRDAS 262
AFG PPARWPVTLHVLP VRDAS
Sbjct 230 AFGAPPARWPVTLHVLPNVRDAS 252
>gi|118619604|ref|YP_907936.1| hypothetical protein MUL_4499 [Mycobacterium ulcerans Agy99]
gi|118571714|gb|ABL06465.1| conserved membrane protein [Mycobacterium ulcerans Agy99]
Length=252
Score = 317 bits (812), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 203/263 (78%), Positives = 220/263 (84%), Gaps = 12/263 (4%)
Query 1 MSARRIRSWKRFDNRSANAAEPDPQLAGTGGRPKVSTRALAQVIERSSRIQGPAAQAYVA 60
MSARR R +EP Q G GRPK STRALAQVIERSS IQ PAA+AY+A
Sbjct 1 MSARRTRQ-----------SEPAAQPTGIMGRPKASTRALAQVIERSSHIQSPAAEAYMA 49
Query 61 RLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVGAAATLPGIGTLAAWFAAAGEVVVFLE 120
RLRRAHP ASPA+IV+K+EKRFL+VVTASGAAVGAAATLPGIGTLAA AAAGE VFLE
Sbjct 50 RLRRAHPAASPAEIVSKIEKRFLAVVTASGAAVGAAATLPGIGTLAALSAAAGETAVFLE 109
Query 121 ATALFVLALASVHAIPLDHRERRRALVLAVLVGDNT-TAVADLLGPGRTSGGWVSETMAS 179
ATAL VLALASV+ PLDHRERR ALVLAVLVGDN+ AVA+++G GRTSG WVSE+MAS
Sbjct 110 ATALLVLALASVYDHPLDHRERRGALVLAVLVGDNSKNAVAEVIGSGRTSGVWVSESMAS 169
Query 180 LPLPAISSLNSRMLKYVVKRFALKRGALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARS 239
LPLPAIS LN+RM KY VKRFALKRG L+FGKL+P GIGAIIGAIGNRLVG+KLVRNARS
Sbjct 170 LPLPAISKLNTRMFKYFVKRFALKRGVLLFGKLLPAGIGAIIGAIGNRLVGRKLVRNARS 229
Query 240 AFGTPPARWPVTLHVLPTVRDAS 262
AFG PP RWPVTLHVLP VRDAS
Sbjct 230 AFGAPPTRWPVTLHVLPNVRDAS 252
>gi|342862126|ref|ZP_08718769.1| hypothetical protein MCOL_24666 [Mycobacterium colombiense CECT
3035]
gi|342130430|gb|EGT83745.1| hypothetical protein MCOL_24666 [Mycobacterium colombiense CECT
3035]
Length=248
Score = 297 bits (760), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 160/238 (68%), Positives = 197/238 (83%), Gaps = 1/238 (0%)
Query 25 QLAGTGGRPKVSTRALAQVIERSSRIQGPAAQAYVARLRRAHPGASPAKIVAKLEKRFLS 84
Q GRPK+S RALAQVIERSS IQGPAA+AYV RLR AHP A PA+I+AKL+KR+L+
Sbjct 10 QPTAKNGRPKMSARALAQVIERSSWIQGPAAEAYVTRLRNAHPDAGPAEIMAKLQKRYLA 69
Query 85 VVTASGAAVGAAATLPGIGTLAAWFAAAGEVVVFLEATALFVLALASVHAIPLDHRERRR 144
+VTA G AVGAAAT+PGIGT++A AAA E V FLEATA FVLA A V+ IP D+RERRR
Sbjct 70 IVTAGGVAVGAAATVPGIGTISALSAAAAETVTFLEATAFFVLATAVVYDIPADNRERRR 129
Query 145 ALVLAVLVGDNTT-AVADLLGPGRTSGGWVSETMASLPLPAISSLNSRMLKYVVKRFALK 203
ALVLAVLVGDN+ AVA L+GPGRT+GGWVSE++A+LPL ++S LNSR+LK V+++ ++
Sbjct 130 ALVLAVLVGDNSERAVAQLIGPGRTNGGWVSESLAALPLSSMSKLNSRLLKSWVRKYTVR 189
Query 204 RGALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARSAFGTPPARWPVTLHVLPTVRDA 261
RGAL+FGKL+P+GIG ++GAIGN L GKK++RN AFGTPPARWP LH++P V +A
Sbjct 190 RGALLFGKLLPVGIGVVVGAIGNYLAGKKMIRNTNRAFGTPPARWPRALHLVPPVHEA 247
>gi|296170151|ref|ZP_06851748.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295895177|gb|EFG74892.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=258
Score = 283 bits (725), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 165/262 (63%), Positives = 202/262 (78%), Gaps = 6/262 (2%)
Query 1 MSARRIRSWKRFDNRS-ANAAEPDPQLAGTGGRPKVSTRALAQVIERSSRIQGPAAQAYV 59
M ARR RS RF + S A+ A P T GRPK S RALAQVIERSSRIQGPAA+AYV
Sbjct 1 MRARRKRSSNRFFSLSHADQAPP-----ATNGRPKASARALAQVIERSSRIQGPAAEAYV 55
Query 60 ARLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVGAAATLPGIGTLAAWFAAAGEVVVFL 119
+RLR AHP + PA I+AKL KR++ +VTASG AVGAAAT+PGIGTL+A AAA E V FL
Sbjct 56 SRLRNAHPRSGPADILAKLRKRYVGMVTASGMAVGAAATIPGIGTLSALSAAAAETVTFL 115
Query 120 EATALFVLALASVHAIPLDHRERRRALVLAVLVGDNTTAVADLLGPGRTSGGWVSETMAS 179
EATA FVLA+A V+ IP DHRERRRALVL+VL GDN+ +L GP RT+GGW++E +A+
Sbjct 116 EATAFFVLAVAVVYDIPADHRERRRALVLSVLAGDNSKEAVELFGPARTNGGWIAEGVAA 175
Query 180 LPLPAISSLNSRMLKYVVKRFALKRGALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARS 239
LPL ++S LNSR+LK VKR+ L+RGALMFGK++P+GIG ++GA+GN G+K+VRNA
Sbjct 176 LPLSSMSRLNSRLLKSWVKRYTLRRGALMFGKVLPVGIGVVVGAVGNYFAGRKIVRNADR 235
Query 240 AFGTPPARWPVTLHVLPTVRDA 261
AFG PP RWP LH++P +A
Sbjct 236 AFGPPPVRWPRALHLVPPYHEA 257
>gi|118466948|ref|YP_880629.1| hypothetical protein MAV_1386 [Mycobacterium avium 104]
gi|118168235|gb|ABK69132.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=257
Score = 282 bits (721), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 173/262 (67%), Positives = 209/262 (80%), Gaps = 7/262 (2%)
Query 1 MSARRIRSWKRFDNRSANAAEPDPQLAGTGGRPKVSTRALAQVIERSSRIQGPAAQAYVA 60
M ARR R RF + S+ AA D GRPKVS RALAQVIERSSRIQGPAA+AYV
Sbjct 1 MRARRNRFPNRFFSTSSAAARTD------SGRPKVSARALAQVIERSSRIQGPAAEAYVT 54
Query 61 RLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVGAAATLPGIGTLAAWFAAAGEVVVFLE 120
RLR AHP A PA+I+AKL+KR+L++VTA G AVGAAAT+PGIGTL+A AAA E V FLE
Sbjct 55 RLRNAHPDAGPAEILAKLQKRYLAIVTAGGVAVGAAATIPGIGTLSALSAAAAETVTFLE 114
Query 121 ATALFVLALASVHAIPLDHRERRRALVLAVLVGDNTT-AVADLLGPGRTSGGWVSETMAS 179
ATA FVLA A V+ IP DHRERRRALVLAVLVGDN+ AVA L+GPGRT GGWVSE++A+
Sbjct 115 ATAFFVLAAAVVYDIPADHRERRRALVLAVLVGDNSERAVAQLIGPGRTQGGWVSESLAA 174
Query 180 LPLPAISSLNSRMLKYVVKRFALKRGALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARS 239
+PL ++S LNSR+LK V+R+ L+RGAL+FGKL+P+GIG ++GA+GN L GKK++RNA
Sbjct 175 VPLSSMSRLNSRLLKSWVRRYTLRRGALLFGKLLPVGIGVVVGAVGNYLAGKKIIRNANR 234
Query 240 AFGTPPARWPVTLHVLPTVRDA 261
AFG PPARWP LH++P + +A
Sbjct 235 AFGAPPARWPRALHLVPPIHEA 256
>gi|254774266|ref|ZP_05215782.1| hypothetical protein MaviaA2_06295 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=257
Score = 281 bits (720), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 173/262 (67%), Positives = 208/262 (80%), Gaps = 7/262 (2%)
Query 1 MSARRIRSWKRFDNRSANAAEPDPQLAGTGGRPKVSTRALAQVIERSSRIQGPAAQAYVA 60
M ARR R RF + S+ AA D GRPKVS RALAQVIERSSRIQGPAA+AYV
Sbjct 1 MRARRNRFPNRFFSTSSAAARTD------SGRPKVSARALAQVIERSSRIQGPAAEAYVT 54
Query 61 RLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVGAAATLPGIGTLAAWFAAAGEVVVFLE 120
RLR HP A PA+I+AKL+KR+L++VTA G AVGAAAT+PGIGTL+A AAA E V FLE
Sbjct 55 RLRNGHPDAGPAEILAKLQKRYLAIVTAGGVAVGAAATIPGIGTLSALSAAAAETVTFLE 114
Query 121 ATALFVLALASVHAIPLDHRERRRALVLAVLVGDNTT-AVADLLGPGRTSGGWVSETMAS 179
ATA FVLA A V+ IP DHRERRRALVLAVLVGDN+ AVA L+GPGRT GGWVSE++A+
Sbjct 115 ATAFFVLAAAVVYDIPADHRERRRALVLAVLVGDNSERAVAQLIGPGRTQGGWVSESLAA 174
Query 180 LPLPAISSLNSRMLKYVVKRFALKRGALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARS 239
LPL ++S LNSR+LK V+R+ L+RGAL+FGKL+P+GIG ++GA+GN L GKK++RNA
Sbjct 175 LPLSSMSRLNSRLLKSWVRRYTLRRGALLFGKLLPVGIGVVVGAVGNYLAGKKIIRNANR 234
Query 240 AFGTPPARWPVTLHVLPTVRDA 261
AFG PPARWP LH++P + +A
Sbjct 235 AFGAPPARWPRALHLVPPIHEA 256
>gi|118473049|ref|YP_889298.1| hypothetical protein MSMEG_5048 [Mycobacterium smegmatis str.
MC2 155]
gi|118174336|gb|ABK75232.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=253
Score = 281 bits (720), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 147/233 (64%), Positives = 185/233 (80%), Gaps = 1/233 (0%)
Query 28 GTGGRPKVSTRALAQVIERSSRIQGPAAQAYVARLRRAHPGASPAKIVAKLEKRFLSVVT 87
G P + + L+ +IE S+R+Q PA +AYV RLR P A+PA+IV++LEK +L+ V
Sbjct 20 GLSDDPGTAAKVLSHIIESSTRVQAPAVRAYVERLRSQQPDATPAQIVSRLEKHYLAAVM 79
Query 88 ASGAAVGAAATLPGIGTLAAWFAAAGEVVVFLEATALFVLALASVHAIPLDHRERRRALV 147
ASGAAVG+AA PGIGTLAA A AGE VVFLEAT++FVLA+A VH IP DHRERRRALV
Sbjct 80 ASGAAVGSAAAFPGIGTLAALSAVAGETVVFLEATSVFVLAVAEVHGIPADHRERRRALV 139
Query 148 LAVLVG-DNTTAVADLLGPGRTSGGWVSETMASLPLPAISSLNSRMLKYVVKRFALKRGA 206
L+VLVG D+ A+ADLLG GRTSG W+S+ A+LPLPA+S LNSR+++Y VKR+ LKRGA
Sbjct 140 LSVLVGEDSKRALADLLGTGRTSGAWLSDGAATLPLPAVSQLNSRLVRYFVKRYTLKRGA 199
Query 207 LMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARSAFGTPPARWPVTLHVLPTVR 259
+ FGKL+P+GIGA+IG +GNR++GKK+V NA AFG PP RWP TLHVLP+ +
Sbjct 200 MAFGKLLPVGIGALIGGVGNRMMGKKIVANAAKAFGAPPPRWPATLHVLPSAQ 252
>gi|41408633|ref|NP_961469.1| hypothetical protein MAP2535 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41396991|gb|AAS04852.1| hypothetical protein MAP_2535 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336458579|gb|EGO37546.1| hypothetical protein MAPs_11690 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=257
Score = 280 bits (717), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 173/262 (67%), Positives = 208/262 (80%), Gaps = 7/262 (2%)
Query 1 MSARRIRSWKRFDNRSANAAEPDPQLAGTGGRPKVSTRALAQVIERSSRIQGPAAQAYVA 60
M ARR R RF + S+ AA D GRPKVS RALAQVIERSSRIQGPAA+AYV
Sbjct 1 MRARRNRFPNRFFSTSSAAARTD------SGRPKVSARALAQVIERSSRIQGPAAEAYVT 54
Query 61 RLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVGAAATLPGIGTLAAWFAAAGEVVVFLE 120
RLR AHP A PA+I+AKL+KR+L++VTA G AVGAAAT+PGIGTL+A AAA E V FLE
Sbjct 55 RLRNAHPDAGPAEILAKLQKRYLAIVTAGGVAVGAAATIPGIGTLSALSAAAAETVTFLE 114
Query 121 ATALFVLALASVHAIPLDHRERRRALVLAVLVGDNTT-AVADLLGPGRTSGGWVSETMAS 179
ATA VLA A V+ IP DHRERRRALVLAVLVGDN+ AVA L+GPGRT GGWVSE++A+
Sbjct 115 ATAFLVLAAAVVYDIPADHRERRRALVLAVLVGDNSERAVAQLIGPGRTQGGWVSESLAA 174
Query 180 LPLPAISSLNSRMLKYVVKRFALKRGALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARS 239
LPL ++S LNSR+LK V+R+ L+RGAL+FGKL+P+GIG ++GA+GN L GKK++RNA
Sbjct 175 LPLSSMSRLNSRLLKSWVRRYTLRRGALLFGKLLPVGIGVVVGAVGNYLAGKKIIRNANR 234
Query 240 AFGTPPARWPVTLHVLPTVRDA 261
AFG PPARWP LH++P + +A
Sbjct 235 AFGAPPARWPRALHLVPPIHEA 256
>gi|15827540|ref|NP_301803.1| hypothetical protein ML1096 [Mycobacterium leprae TN]
gi|221230017|ref|YP_002503433.1| hypothetical protein MLBr_01096 [Mycobacterium leprae Br4923]
gi|13093090|emb|CAC31477.1| putative membrane protein [Mycobacterium leprae]
gi|219933124|emb|CAR71191.1| putative membrane protein [Mycobacterium leprae Br4923]
Length=224
Score = 280 bits (716), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 149/223 (67%), Positives = 182/223 (82%), Gaps = 1/223 (0%)
Query 40 LAQVIERSSRIQGPAAQAYVARLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVGAAATL 99
+AQVIERS IQGPAA+AYVARLRR HP ASP +IVAKLEK +L+ +TASGA VG+ ATL
Sbjct 1 MAQVIERSVWIQGPAAEAYVARLRRTHPSASPTEIVAKLEKHYLAALTASGAVVGSVATL 60
Query 100 PGIGTLAAWFAAAGEVVVFLEATALFVLALASVHAIPLDHRERRRALVLAVLVGDNT-TA 158
PGIGTLAA A AGE V FLEATA+FVL +ASV+ IP +HRERRRALVLAVL GD+T
Sbjct 61 PGIGTLAAVSANAGETVFFLEATAVFVLTIASVYGIPANHRERRRALVLAVLAGDDTRLT 120
Query 159 VADLLGPGRTSGGWVSETMASLPLPAISSLNSRMLKYVVKRFALKRGALMFGKLVPMGIG 218
+ +L+GPGRT+GGW+ E MASLPL S L++RML+Y KR ++RGALMFGK++P+GIG
Sbjct 121 IGELIGPGRTNGGWLLEGMASLPLSTWSQLHTRMLRYAAKRCTVRRGALMFGKILPIGIG 180
Query 219 AIIGAIGNRLVGKKLVRNARSAFGTPPARWPVTLHVLPTVRDA 261
A +G GNR+VGKK++ N R+AFGT P+RWP TL +LPTV +A
Sbjct 181 AAVGGAGNRVVGKKIISNTRNAFGTAPSRWPATLILLPTVHNA 223
>gi|120405428|ref|YP_955257.1| hypothetical protein Mvan_4476 [Mycobacterium vanbaalenii PYR-1]
gi|119958246|gb|ABM15251.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=247
Score = 278 bits (710), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 146/228 (65%), Positives = 184/228 (81%), Gaps = 1/228 (0%)
Query 33 PKVSTRALAQVIERSSRIQGPAAQAYVARLRRAHPGASPAKIVAKLEKRFLSVVTASGAA 92
P + + L+Q+IER +R+QGPA +AYV RLR +PGA+PA+I+ KL+K++L+ V ASGAA
Sbjct 19 PGAAAKVLSQIIERGARVQGPAVKAYVERLRDNNPGATPAEIIDKLDKKYLAAVMASGAA 78
Query 93 VGAAATLPGIGTLAAWFAAAGEVVVFLEATALFVLALASVHAIPLDHRERRRALVLAVLV 152
VG+ A PGIGTL A A AGE VVFLEATAL+VLA+A VH IP +HRERRRALVL+VLV
Sbjct 79 VGSTAAYPGIGTLVAMSAVAGETVVFLEATALYVLAVAEVHGIPAEHRERRRALVLSVLV 138
Query 153 G-DNTTAVADLLGPGRTSGGWVSETMASLPLPAISSLNSRMLKYVVKRFALKRGALMFGK 211
G D+ AVADLLG GRTSG WVS+ A+LPLPA+S LNSR+L+Y VKR+ LKRGAL FGK
Sbjct 139 GEDSKRAVADLLGSGRTSGAWVSDGAATLPLPALSQLNSRLLRYFVKRYTLKRGALAFGK 198
Query 212 LVPMGIGAIIGAIGNRLVGKKLVRNARSAFGTPPARWPVTLHVLPTVR 259
++P+GIGA++G +GNR +GKK++ NA +AFG PARWP LH+LP R
Sbjct 199 MLPVGIGAVVGGVGNRFMGKKIIANAHNAFGAAPARWPSPLHLLPAPR 246
>gi|126436561|ref|YP_001072252.1| hypothetical protein Mjls_3986 [Mycobacterium sp. JLS]
gi|126236361|gb|ABN99761.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=252
Score = 276 bits (707), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 145/234 (62%), Positives = 186/234 (80%), Gaps = 1/234 (0%)
Query 27 AGTGGRPKVSTRALAQVIERSSRIQGPAAQAYVARLRRAHPGASPAKIVAKLEKRFLSVV 86
A +P + + L+++IERSSR+QGPA +AYV R+R ASPA+I+ KLEK +++ V
Sbjct 16 AADDEKPGAAAKVLSRIIERSSRVQGPAVKAYVDRVRAGDRTASPAEIITKLEKHYMAAV 75
Query 87 TASGAAVGAAATLPGIGTLAAWFAAAGEVVVFLEATALFVLALASVHAIPLDHRERRRAL 146
SGAAVG+ A PG+GT+AA A AGE VVFLEAT+LFVLA+A VH IP RERRRAL
Sbjct 76 MTSGAAVGSTAAFPGVGTIAAMSAVAGETVVFLEATSLFVLAVAEVHGIPAAERERRRAL 135
Query 147 VLAVLVG-DNTTAVADLLGPGRTSGGWVSETMASLPLPAISSLNSRMLKYVVKRFALKRG 205
VL+VLVG D+ AVADLLG GRTSG W+SE A+LPLPA+S LNSR+++Y VKR+ LKR
Sbjct 136 VLSVLVGEDSRQAVADLLGRGRTSGAWISEGAATLPLPAVSQLNSRLVRYFVKRYTLKRS 195
Query 206 ALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARSAFGTPPARWPVTLHVLPTVR 259
AL FGK++P+G+GA++G +GNR++GKK+V NARSAFG PP+RWP TLHVLP+V+
Sbjct 196 ALAFGKVLPVGVGAVVGGVGNRMMGKKIVENARSAFGPPPSRWPSTLHVLPSVQ 249
>gi|108800936|ref|YP_641133.1| hypothetical protein Mmcs_3972 [Mycobacterium sp. MCS]
gi|119870076|ref|YP_940028.1| hypothetical protein Mkms_4046 [Mycobacterium sp. KMS]
gi|108771355|gb|ABG10077.1| putative membrane protein [Mycobacterium sp. MCS]
gi|119696165|gb|ABL93238.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=252
Score = 275 bits (704), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 144/234 (62%), Positives = 185/234 (80%), Gaps = 1/234 (0%)
Query 27 AGTGGRPKVSTRALAQVIERSSRIQGPAAQAYVARLRRAHPGASPAKIVAKLEKRFLSVV 86
A +P + + L+++IERSSR+QGPA +AYV R+R ASPA+I+ KLEK +++ V
Sbjct 16 AADDEKPGAAAKVLSRIIERSSRVQGPAVKAYVDRVRAGDRTASPAEIITKLEKHYMAAV 75
Query 87 TASGAAVGAAATLPGIGTLAAWFAAAGEVVVFLEATALFVLALASVHAIPLDHRERRRAL 146
SGAAVG+ A PG+GT+AA A AGE VVFLEAT+LFVLA+A VH IP RERRRAL
Sbjct 76 MTSGAAVGSTAAFPGVGTIAAMSAVAGETVVFLEATSLFVLAVAEVHGIPAAERERRRAL 135
Query 147 VLAVLVG-DNTTAVADLLGPGRTSGGWVSETMASLPLPAISSLNSRMLKYVVKRFALKRG 205
VL+VLVG D+ AVADLLG GRTSG W+SE A+LPLPA+S LNSR+++Y VKR+ LKR
Sbjct 136 VLSVLVGEDSRQAVADLLGRGRTSGAWISEGAATLPLPAVSQLNSRLVRYFVKRYTLKRS 195
Query 206 ALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARSAFGTPPARWPVTLHVLPTVR 259
AL FGK++P+G+GA++G +GNR++GKK+V NARSAFG PP+RWP TLHVLP+ +
Sbjct 196 ALAFGKVLPVGVGAVVGGVGNRMMGKKIVENARSAFGPPPSRWPSTLHVLPSAQ 249
>gi|333989857|ref|YP_004522471.1| hypothetical protein JDM601_1217 [Mycobacterium sp. JDM601]
gi|333485825|gb|AEF35217.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=260
Score = 271 bits (693), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 152/247 (62%), Positives = 189/247 (77%), Gaps = 3/247 (1%)
Query 15 RSANAAEPDPQLAGTGGRPKVSTRALAQVIERSSRIQGPAAQAYVARLRRAHPGASPAKI 74
R +A EP P A G +P ++ R L++VIE S ++QGPA +AY+ RLR PG PA++
Sbjct 6 RRRSAQEPAP--APGGEKPGMTARVLSRVIESSEKVQGPAVRAYIERLRHRDPGVGPAQV 63
Query 75 VAKLEKRFLSVVTASGAAVGAAATLPGIGTLAAWFAAAGEVVVFLEATALFVLALASVHA 134
V KLE+R+L+ TASGAAVGA A +P IGTL A A AGE VFLEATA FVL +A VH
Sbjct 64 VKKLERRYLAAATASGAAVGATAAVPAIGTLLALSAVAGETAVFLEATAFFVLCVAEVHG 123
Query 135 IPLDHRERRRALVLAVLVGDN-TTAVADLLGPGRTSGGWVSETMASLPLPAISSLNSRML 193
IP+D+RERRRALVLAVLVGD A+ADLLG GRTSG W+++ A+LPLPA+S LNSR+L
Sbjct 124 IPVDNRERRRALVLAVLVGDQGKGAMADLLGSGRTSGAWLAQGTAALPLPAVSELNSRLL 183
Query 194 KYVVKRFALKRGALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARSAFGTPPARWPVTLH 253
+Y VKRF L+RGAL FGKL+P+G+GA+IGA+GNR +GKK+V NAR AFG RWPVTLH
Sbjct 184 RYFVKRFTLRRGALAFGKLLPVGLGAVIGALGNRFIGKKIVGNARKAFGPAADRWPVTLH 243
Query 254 VLPTVRD 260
+LP + D
Sbjct 244 LLPALPD 250
>gi|254821722|ref|ZP_05226723.1| hypothetical protein MintA_17442 [Mycobacterium intracellulare
ATCC 13950]
Length=245
Score = 267 bits (683), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 162/246 (66%), Positives = 200/246 (82%), Gaps = 4/246 (1%)
Query 17 ANAAEPDPQLAGTGGRPKVSTRALAQVIERSSRIQGPAAQAYVARLRRAHPGASPAKIVA 76
ANA E G GRPK+S RALAQVIERSSRIQGPAA+AYV RLR A P ASPA+I+A
Sbjct 2 ANAGEAP---TGKNGRPKMSARALAQVIERSSRIQGPAAEAYVTRLRNADPDASPAEILA 58
Query 77 KLEKRFLSVVTASGAAVGAAATLPGIGTLAAWFAAAGEVVVFLEATALFVLALASVHAIP 136
KL+KR++++VTA G AVGAAAT+PGIGTL+A AAA E V FLEATA FVLA+A VH IP
Sbjct 59 KLQKRYVAMVTAGGVAVGAAATVPGIGTLSALSAAAAETVTFLEATAFFVLAVAVVHDIP 118
Query 137 LDHRERRRALVLAVLVGDNT-TAVADLLGPGRTSGGWVSETMASLPLPAISSLNSRMLKY 195
DHRERRRALVLAVLVGDN+ AV L+GP RT+GGW+SE++A+LPL ++S LNSR+LK
Sbjct 119 ADHRERRRALVLAVLVGDNSEQAVTQLIGPRRTNGGWISESLAALPLSSMSGLNSRLLKS 178
Query 196 VVKRFALKRGALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARSAFGTPPARWPVTLHVL 255
V+++ ++RGAL+FGKL+P+GIG ++GA+GN L GKK+VRNA AFG PP RWP LH++
Sbjct 179 WVRKYTVRRGALLFGKLLPVGIGVVVGAVGNYLAGKKMVRNANRAFGPPPGRWPRALHLV 238
Query 256 PTVRDA 261
P + +A
Sbjct 239 PPIHEA 244
>gi|145222807|ref|YP_001133485.1| hypothetical protein Mflv_2219 [Mycobacterium gilvum PYR-GCK]
gi|315443274|ref|YP_004076153.1| hypothetical protein Mspyr1_16510 [Mycobacterium sp. Spyr1]
gi|145215293|gb|ABP44697.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
gi|315261577|gb|ADT98318.1| hypothetical protein Mspyr1_16510 [Mycobacterium sp. Spyr1]
Length=247
Score = 265 bits (677), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 149/227 (66%), Positives = 184/227 (82%), Gaps = 1/227 (0%)
Query 35 VSTRALAQVIERSSRIQGPAAQAYVARLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVG 94
V+ RAL+Q+IER +R+QGPA +AYVARLR P ASPA I+ KL+ ++++ ASGAAVG
Sbjct 21 VAARALSQIIERGARVQGPAVRAYVARLRENSPEASPADIITKLDTQYMAAAMASGAAVG 80
Query 95 AAATLPGIGTLAAWFAAAGEVVVFLEATALFVLALASVHAIPLDHRERRRALVLAVLVG- 153
+AA PGIGTL A A AGE VVFLEAT L+VLA+A VH IP +HRERRRALVL+VLVG
Sbjct 81 SAAAYPGIGTLVAMSAVAGETVVFLEATTLYVLAMAEVHGIPAEHRERRRALVLSVLVGE 140
Query 154 DNTTAVADLLGPGRTSGGWVSETMASLPLPAISSLNSRMLKYVVKRFALKRGALMFGKLV 213
D+ AVADLLGPGRTSG WVS+ A+LPLPA+S LN+R+L+Y VKR+ LKRGAL FGK++
Sbjct 141 DSKRAVADLLGPGRTSGAWVSDGAATLPLPALSQLNTRLLRYFVKRYTLKRGALAFGKML 200
Query 214 PMGIGAIIGAIGNRLVGKKLVRNARSAFGTPPARWPVTLHVLPTVRD 260
P+GIGA++G +GNRL+ KK+V NA +AFG PPARWP LH+LP RD
Sbjct 201 PVGIGAVVGGVGNRLMAKKIVGNAHTAFGNPPARWPSPLHLLPAPRD 247
>gi|169628485|ref|YP_001702134.1| hypothetical protein MAB_1394c [Mycobacterium abscessus ATCC
19977]
gi|169240452|emb|CAM61480.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=253
Score = 216 bits (550), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 134/246 (55%), Positives = 176/246 (72%), Gaps = 6/246 (2%)
Query 16 SANAAEPDPQLAGTG----GRPKVSTRALAQVIERSSRIQGPAAQAYVARLRRAHPGASP 71
S EP QLA G +P S + L+ V+++S+++Q PA +AYV +LR HP A+P
Sbjct 4 STRITEPQRQLALGGKSKESKPGASGKLLSLVLDQSTKVQEPAVRAYVQKLRATHPTATP 63
Query 72 AKIVAKLEKRFLSVVTASGAAVGAAATLPGIGTLAAWFAAAGEVVVFLEATALFVLALAS 131
A +VA LEKR+L+ V SGAAVGAAA PG+GTLAA A AGE V+FLEAT+LF LALA+
Sbjct 64 ADVVAMLEKRYLATVMGSGAAVGAAAAFPGVGTLAALSATAGEAVLFLEATSLFTLALAA 123
Query 132 VHAIPLDHRERRRALVLAVLVG-DNTTAVADLLGPGRT-SGGWVSETMASLPLPAISSLN 189
VH I L E R LVLAVL+G D T V+D+LG RT GGW++E ++LP+PA+S LN
Sbjct 124 VHDIELAKIEHRHTLVLAVLLGEDGETTVSDVLGKERTVGGGWLAEATSTLPVPALSHLN 183
Query 190 SRMLKYVVKRFALKRGALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARSAFGTPPARWP 249
+ +LK K+FA+KRGA+ GKL+P GIGA+IGA GNR +GK+++ NAR+AFG PP WP
Sbjct 184 ATLLKRFTKKFAVKRGAMAAGKLLPAGIGAVIGAGGNRFIGKRIITNARNAFGEPPTAWP 243
Query 250 VTLHVL 255
V L ++
Sbjct 244 VQLRLV 249
>gi|226307605|ref|YP_002767565.1| hypothetical protein RER_41180 [Rhodococcus erythropolis PR4]
gi|226186722|dbj|BAH34826.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length=281
Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 102/219 (47%), Positives = 143/219 (66%), Gaps = 1/219 (0%)
Query 38 RALAQVIERSSRIQGPAAQAYVARLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVGAAA 97
+ L V++ SR+Q PA YV +R+AHP SPA+IV ++EK F+ VT SG+AVGA A
Sbjct 46 KVLVSVLDNGSRLQAPAVAKYVNHVRKAHPDESPAQIVERMEKMFILAVTGSGSAVGATA 105
Query 98 TLPGIGTLAAWFAAAGEVVVFLEATALFVLALASVHAIPLDHRERRRALVLAVLVGDNTT 157
+PG+GT+A+ A E FLEA+AL LA+ASVH I + ++RRALVLAV +G++
Sbjct 106 AVPGVGTVASIAAVGAESAFFLEASALLTLAIASVHGISVQDHQQRRALVLAVALGESGM 165
Query 158 AVADLLGPGRTSGGWVSETMASLPLPAISSLNSRMLKYVVKRFALKRGALMFGKLVPMGI 217
+ G T+ W + + +P P + +NS +++ V ++A KR AL+ GKLVP GI
Sbjct 166 EIVQ-KATGITAKNWGTAITSKIPGPTMRGMNSTLVRKFVTKYAAKRSALILGKLVPAGI 224
Query 218 GAIIGAIGNRLVGKKLVRNARSAFGTPPARWPVTLHVLP 256
GA+IG GNR +GK +V+NAR AFG PARW L V+P
Sbjct 225 GAVIGGAGNRAIGKGVVKNAREAFGPAPARWTDHLIVMP 263
>gi|229493780|ref|ZP_04387558.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|229319279|gb|EEN85122.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=249
Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 102/219 (47%), Positives = 143/219 (66%), Gaps = 1/219 (0%)
Query 38 RALAQVIERSSRIQGPAAQAYVARLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVGAAA 97
+ L V++ SR+Q PA YV +R+AHP SPA+IV ++EK F+ VT SG+AVGA A
Sbjct 14 KVLVSVLDNGSRLQAPAVAKYVNHVRKAHPDESPAQIVERMEKMFILAVTGSGSAVGATA 73
Query 98 TLPGIGTLAAWFAAAGEVVVFLEATALFVLALASVHAIPLDHRERRRALVLAVLVGDNTT 157
+PG+GT+A+ A E FLEA+AL LA+ASVH I + ++RRALVLAV +G++
Sbjct 74 AVPGVGTVASIAAVGAESAFFLEASALLTLAIASVHGISVQDHQQRRALVLAVALGESGM 133
Query 158 AVADLLGPGRTSGGWVSETMASLPLPAISSLNSRMLKYVVKRFALKRGALMFGKLVPMGI 217
+ G T+ W + + +P P + +NS +++ V ++A KR AL+ GKLVP GI
Sbjct 134 EIVQ-KATGITAKNWGTAITSKIPGPTMRGMNSTLVRKFVTKYAAKRSALILGKLVPAGI 192
Query 218 GAIIGAIGNRLVGKKLVRNARSAFGTPPARWPVTLHVLP 256
GA+IG GNR +GK +V+NAR AFG PARW L V+P
Sbjct 193 GAVIGGAGNRAIGKGVVKNAREAFGPAPARWTDHLIVMP 231
>gi|111022980|ref|YP_705952.1| hypothetical protein RHA1_ro06017 [Rhodococcus jostii RHA1]
gi|110822510|gb|ABG97794.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=228
Score = 168 bits (426), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 107/230 (47%), Positives = 148/230 (65%), Gaps = 4/230 (1%)
Query 26 LAGTGGRPKVSTRALAQVIERSSRIQGPAAQAYVARLRRAHPGASPAKIVAKLEKRFLSV 85
+AG GG + + L V++ SR+Q PA YV +RR+HPG SPA+IV ++EK FL
Sbjct 1 MAGNGGPVE---KVLVSVLDNGSRLQAPAVAKYVEWVRRSHPGESPAQIVERMEKMFLLA 57
Query 86 VTASGAAVGAAATLPGIGTLAAWFAAAGEVVVFLEATALFVLALASVHAIPLDHRERRRA 145
VT SG+AVGA A +PG+GT+A+ A E FLEA AL LA+ASVH I ++RRA
Sbjct 58 VTGSGSAVGATAAIPGVGTIASIAAVGAESAFFLEAAALLTLAVASVHGISAADHQQRRA 117
Query 146 LVLAVLVGDNTTAVADLLGPGRTSGGWVSETMASLPLPAISSLNSRMLKYVVKRFALKRG 205
LVL+V +G++ + G T+ W S + +P P + +NSR+++ + ++A +R
Sbjct 118 LVLSVALGESGMEIVQ-KATGVTAKNWASAITSRIPGPTMKGMNSRLVRKFITKYAARRS 176
Query 206 ALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARSAFGTPPARWPVTLHVL 255
AL+ GKLVP GIGA IG GNR +GK +V+NAR AFG PARWP LH +
Sbjct 177 ALVLGKLVPAGIGAAIGGAGNRAIGKGVVKNAREAFGPAPARWPDELHAI 226
>gi|325676636|ref|ZP_08156313.1| hypothetical protein HMPREF0724_14096 [Rhodococcus equi ATCC
33707]
gi|325552564|gb|EGD22249.1| hypothetical protein HMPREF0724_14096 [Rhodococcus equi ATCC
33707]
Length=246
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 96/210 (46%), Positives = 140/210 (67%), Gaps = 3/210 (1%)
Query 40 LAQVIERSSRIQGPAAQAYVARLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVGAAATL 99
+ V++ +SR+Q PA YV R+RRAHP +PA+IVA++EK FL VT SG+AVGA A +
Sbjct 12 IVSVLDNASRLQAPAVAKYVERVRRAHPDETPAQIVARMEKMFLRAVTGSGSAVGATAAV 71
Query 100 PGIGTLAAWFAAAGEVVVFLEATALFVLALASVHAI-PLDHRERRRALVLAVLVGDNTTA 158
P +GT+A+ A E FLEA+AL LA+ASVH I P+DH ++RRALVLAV +G++
Sbjct 72 PAVGTVASIAAVGAETAFFLEASALLTLAIASVHGISPVDH-QQRRALVLAVALGESGME 130
Query 159 VADLLGPGRTSGGWVSETMASLPLPAISSLNSRMLKYVVKRFALKRGALMFGKLVPMGIG 218
+ + G T+ W +P + ++N+ +++ V ++A KR AL+ GKL+P G+G
Sbjct 131 IVE-KATGITATNWARLVTGRIPSGTMKTMNTSLVRKFVTKYAAKRSALVLGKLLPAGVG 189
Query 219 AIIGAIGNRLVGKKLVRNARSAFGTPPARW 248
A+IG GNR +G+ ++ NAR AFG PA W
Sbjct 190 AVIGGAGNRAIGRGVIDNAREAFGPAPALW 219
>gi|312138905|ref|YP_004006241.1| hypothetical protein REQ_14780 [Rhodococcus equi 103S]
gi|311888244|emb|CBH47556.1| conserved hypothetical protein [Rhodococcus equi 103S]
Length=239
Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/210 (46%), Positives = 140/210 (67%), Gaps = 3/210 (1%)
Query 40 LAQVIERSSRIQGPAAQAYVARLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVGAAATL 99
+ V++ +SR+Q PA YV R+RRAHP +PA+IVA++EK FL VT SG+AVGA A +
Sbjct 5 IVSVLDNASRLQAPAVAKYVERVRRAHPDETPAQIVARMEKMFLRAVTGSGSAVGATAAV 64
Query 100 PGIGTLAAWFAAAGEVVVFLEATALFVLALASVHAI-PLDHRERRRALVLAVLVGDNTTA 158
P +GT+A+ A E FLEA+AL LA+ASVH I P+DH ++RRALVLAV +G++
Sbjct 65 PAVGTVASIAAVGAETAFFLEASALLTLAIASVHGISPVDH-QQRRALVLAVALGESGME 123
Query 159 VADLLGPGRTSGGWVSETMASLPLPAISSLNSRMLKYVVKRFALKRGALMFGKLVPMGIG 218
+ + G T+ W +P + ++N+ +++ V ++A KR AL+ GKL+P G+G
Sbjct 124 IVE-KATGITATNWARLVTGRIPSGTMKTMNTSLVRKFVTKYAAKRSALVLGKLLPAGVG 182
Query 219 AIIGAIGNRLVGKKLVRNARSAFGTPPARW 248
A+IG GNR +G+ ++ NAR AFG PA W
Sbjct 183 AVIGGAGNRAIGRGVIDNAREAFGPAPALW 212
>gi|333920979|ref|YP_004494560.1| hypothetical protein AS9A_3318 [Amycolicicoccus subflavus DQS3-9A1]
gi|333483200|gb|AEF41760.1| hypothetical protein AS9A_3318 [Amycolicicoccus subflavus DQS3-9A1]
Length=260
Score = 164 bits (416), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 102/254 (41%), Positives = 154/254 (61%), Gaps = 10/254 (3%)
Query 1 MSARRIRSWKRFDNRSANAAEPDPQLAGTGGRPKVSTRALAQVIERSSRIQGPAAQAYVA 60
M RR R + F + A PD P + R + ++++R I GP ++V
Sbjct 1 MQLRRGRDGEEFPSEKTELAVPDDN-------PGFAGRIVMRMLDRGVHIPGPVIASFVQ 53
Query 61 RLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVGAAATLPGIGTLAAWFAAAGEVVVFLE 120
LR HP +PA+IV +++ FL+ VTASGAAVGA A +PG+GT+AA AA GE VF+
Sbjct 54 NLRTKHPDETPAQIVGRIDSFFLNTVTASGAAVGATAAVPGVGTVAALAAAGGETAVFVA 113
Query 121 ATALFVLALASVHAIPLDHRERRRALVLAVLVGDNTTAVADLLGPGRTSGGWVSETMAS- 179
+A + LALA V+ +PLD ERRRALV+++ +G + + +A+ R G +++++A+
Sbjct 114 TSAFYTLALAEVYGLPLDDIERRRALVMSIALGGSGSLLAEKTALRR--GKSLADSVANY 171
Query 180 LPLPAISSLNSRMLKYVVKRFALKRGALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARS 239
LP P++ LN+ + + ++ R A RG + G++VP G+GA IGA NR +GK +V NA
Sbjct 172 LPAPSLGKLNAALARRMLIRMAQTRGFMTLGRIVPFGVGAAIGAASNRTLGKAMVINAHR 231
Query 240 AFGTPPARWPVTLH 253
AFG PP RW +H
Sbjct 232 AFGLPPRRWLTVIH 245
>gi|226365485|ref|YP_002783268.1| hypothetical protein ROP_60760 [Rhodococcus opacus B4]
gi|226243975|dbj|BAH54323.1| hypothetical protein [Rhodococcus opacus B4]
Length=228
Score = 162 bits (410), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 105/230 (46%), Positives = 146/230 (64%), Gaps = 4/230 (1%)
Query 26 LAGTGGRPKVSTRALAQVIERSSRIQGPAAQAYVARLRRAHPGASPAKIVAKLEKRFLSV 85
+AG GG + + L V++ SR+Q PA YV +RR+HPG SPA+IV ++EK FL
Sbjct 1 MAGNGGPVE---KVLVSVLDNGSRLQAPAVAKYVEWVRRSHPGESPAQIVERMEKMFLLA 57
Query 86 VTASGAAVGAAATLPGIGTLAAWFAAAGEVVVFLEATALFVLALASVHAIPLDHRERRRA 145
VT SG+AVGA A +PG+GT+A+ A E FLEA AL LA+ASVH I ++RRA
Sbjct 58 VTGSGSAVGATAAIPGVGTVASIAAVGAESAFFLEAAALLTLAVASVHGISAADHQQRRA 117
Query 146 LVLAVLVGDNTTAVADLLGPGRTSGGWVSETMASLPLPAISSLNSRMLKYVVKRFALKRG 205
LVL+V +G++ + G T+ W S + +P P + +NS +++ + ++A +R
Sbjct 118 LVLSVALGESGMEIVQ-KATGVTAKNWASAITSRIPGPTMKGMNSTLVRKFITKYAARRS 176
Query 206 ALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARSAFGTPPARWPVTLHVL 255
AL+ GKLVP GIGA IG GNR +GK +V+NAR AFG PARWP L +
Sbjct 177 ALILGKLVPAGIGAAIGGAGNRAIGKGVVKNAREAFGPAPARWPNELRAI 226
>gi|54026664|ref|YP_120906.1| hypothetical protein nfa46910 [Nocardia farcinica IFM 10152]
gi|54018172|dbj|BAD59542.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=240
Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 98/212 (47%), Positives = 144/212 (68%), Gaps = 3/212 (1%)
Query 38 RALAQVIERSSRIQGPAAQAYVARLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVGAAA 97
+ + ++E +++QGPA Y+ R+RRAHP SPA+I+ ++E++FL VT SG A GA A
Sbjct 8 KTVISLLENGAKLQGPAVDKYIERIRRAHPEESPAQIIDRIERQFLLAVTGSGTAAGATA 67
Query 98 TLPGIGTLAAWFAAAGEVVVFLEATALFVLALASVHAIPLDHRERRRALVLAVLVGDNTT 157
+PG+GT+A+ E FLEA+AL+ LA+A+VH I + +E+RRALVLAV++GD+
Sbjct 68 AMPGVGTVASLATITAETAFFLEASALYTLAVAAVHGIAPEAKEQRRALVLAVVLGDSGM 127
Query 158 AVADLLGPGRTSGGWVSETMASLPLPAISSLNSRMLKYVVKRFALKRGALMFGKLVPMGI 217
+ + GR++ W T+ + +P +S +N ++K V RF KR ALM GK++PMGI
Sbjct 128 QIVE-RSVGRSAQNW--GTLMANRIPGLSGMNDSLMKRFVVRFLTKRMALMAGKVIPMGI 184
Query 218 GAIIGAIGNRLVGKKLVRNARSAFGTPPARWP 249
GA+IG +GNR +G+ V NAR AFG PPA WP
Sbjct 185 GAVIGGVGNRALGRTTVDNARKAFGPPPATWP 216
>gi|319950434|ref|ZP_08024349.1| hypothetical protein ES5_12670 [Dietzia cinnamea P4]
gi|319435898|gb|EFV91103.1| hypothetical protein ES5_12670 [Dietzia cinnamea P4]
Length=231
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/207 (48%), Positives = 132/207 (64%), Gaps = 1/207 (0%)
Query 44 IERSSRIQGPAAQAYVARLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVGAAATLPGIG 103
+ R+ R Q AA+AYV +LRRAHP SP +I +L+ RFL+ VTASGAAVGA A +PGIG
Sbjct 23 LRRAIRGQAGAARAYVRQLRRAHPDESPVRIRERLDSRFLTAVTASGAAVGATAAVPGIG 82
Query 104 TLAAWFAAAGEVVVFLEATALFVLALASVHAIPLDHRERRRALVLAVLVGDNTTAV-ADL 162
T+ A+ A E +VFLEA A + LA+A VH I + E LV+ V++G + TA+ A+
Sbjct 83 TIVAFGAVGAESLVFLEAAAFYTLAVAEVHGIDVREGEHEELLVMTVMLGASGTAILANA 142
Query 163 LGPGRTSGGWVSETMASLPLPAISSLNSRMLKYVVKRFALKRGALMFGKLVPMGIGAIIG 222
+G SGG S SL +P + +N RML V++FA+KR L GKL P G+GA +G
Sbjct 143 VGSSGGSGGAASLASRSLHVPGLKEINRRMLSRFVRKFAVKRAGLAVGKLAPAGLGAAVG 202
Query 223 AIGNRLVGKKLVRNARSAFGTPPARWP 249
GNR +G+ +V A + FG PP WP
Sbjct 203 GWGNRRLGRTVVDTAHATFGAPPTAWP 229
>gi|262201825|ref|YP_003273033.1| hypothetical protein Gbro_1885 [Gordonia bronchialis DSM 43247]
gi|262085172|gb|ACY21140.1| hypothetical protein Gbro_1885 [Gordonia bronchialis DSM 43247]
Length=243
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 98/215 (46%), Positives = 143/215 (67%), Gaps = 5/215 (2%)
Query 43 VIERSSRIQGPAAQAYVARLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVGAAATLPGI 102
+++R+ R+Q PA Q YVA LR +P SPA+I+ +LEKR+L+ VT SG AVGA A +PG+
Sbjct 22 LLDRAQRLQAPAVQKYVASLREKYPDDSPAQIIRRLEKRYLTAVTGSGGAVGATAAVPGV 81
Query 103 GTLAAWFAAAGEVVVFLEATALFVLALASVHAIPLDHRERRRALVLAVLVGDN-TTAVAD 161
GT+ A A GE FLEA+AL LA+A VH IPL ERR+ALV AV +G+ A+
Sbjct 82 GTMTAMGAMTGETAFFLEASALLALAIAEVHGIPLHDIERRKALVFAVALGEEGVIALGR 141
Query 162 LLGPGRTSGGWV-SETMASLPLPAISSLNSRMLKYVVKRFALKRGALMFGKLVPMGIGAI 220
++G T GG + S +S+P A++ LN ++ + +++ ++ LM GKL+P GIGA+
Sbjct 142 VVG---TRGGALRSLGGSSVPRSALTKLNKSLVSKLSRKYFFRKAPLMLGKLMPAGIGAV 198
Query 221 IGAIGNRLVGKKLVRNARSAFGTPPARWPVTLHVL 255
IG +G R +G+++V NAR AFG PP+ W + V+
Sbjct 199 IGGVGGRALGRRVVHNAREAFGPPPSAWIIDATVV 233
>gi|296138939|ref|YP_003646182.1| hypothetical protein Tpau_1212 [Tsukamurella paurometabola DSM
20162]
gi|296027073|gb|ADG77843.1| conserved hypothetical protein [Tsukamurella paurometabola DSM
20162]
Length=251
Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/215 (46%), Positives = 141/215 (66%), Gaps = 11/215 (5%)
Query 40 LAQVIERSSRIQGPAAQAYVARLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVGAAATL 99
L VI+R++R+Q PA YVA LR AHP SPA+I+ ++EKR+L VT +G A GA A +
Sbjct 22 LGSVIDRAARLQAPAVAKYVAGLREAHPDESPAQIIGRIEKRYLLTVTGTGGAAGATAAV 81
Query 100 PGIGTLAAWFAAAGEVVVFLEATALFVLALASVHAIPLDHRERRRALVLAVLVGDNTTAV 159
PG+GTLAA E VVF+EA+AL+ LA+A V+ I + RE R+ALVL ++G+
Sbjct 82 PGVGTLAAIGTVGAETVVFMEASALYALAVAEVYGISPEDRELRKALVLTAVLGEAG--- 138
Query 160 ADLLGPGRTSGGWVSETMASL-----PLPAISSLNSRMLKYVVKRFALKRGALMFGKLVP 214
LG R + G + ++ +L LP +S LN +++K +RF K+ L+ GKL+P
Sbjct 139 ---LGALRATVGAKNASLMNLKRNPAQLPGLSGLNKQLMKMFSRRFLAKKSPLVLGKLLP 195
Query 215 MGIGAIIGAIGNRLVGKKLVRNARSAFGTPPARWP 249
GIGA++GA GNR++GK +++N+R+AFG P WP
Sbjct 196 AGIGAVVGAGGNRVLGKGVIKNSRNAFGPVPTAWP 230
>gi|50955013|ref|YP_062301.1| hypothetical protein Lxx13700 [Leifsonia xyli subsp. xyli str.
CTCB07]
gi|50951495|gb|AAT89196.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str.
CTCB07]
Length=360
Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 90/237 (38%), Positives = 135/237 (57%), Gaps = 8/237 (3%)
Query 24 PQLAGTGGRPK--VSTRALAQVIERSSRIQGPAAQAYVARLRRAHPGASPAKIVAKLEKR 81
P ++ TGG P+ + AL ++R IQ PAA A++ LRR HP A+ ++ LE+R
Sbjct 7 PLVSVTGGPPRGGDTPHALDTALDRFLAIQRPAAVAHLRALRRRHPDATAVELARMLERR 66
Query 82 FLSVVTASGAAVGAAATLPGIGTLAAWFAAAGEVVVFLEATALFVLALASVHAIPLDHRE 141
+L+ VT+ GAAVGA A +P IGT + E FLE+TAL+ +L+ +H I +
Sbjct 67 YLAAVTSGGAAVGATAVIPAIGTGVTLALSGLETAGFLESTALYAQSLSELHGIAVGDPS 126
Query 142 RRRALVLAVLVGDNTTAVADLLGPGRTSGG------WVSETMASLPLPAISSLNSRMLKY 195
R RALVL +++G + + G T G W ++LP + L R+
Sbjct 127 RARALVLTMMLGREGSDLVRQFGGQLTGEGAARSAYWGELVTSALPQIVVGPLVDRLRSA 186
Query 196 VVKRFALKRGALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARSAFGTPPARWPVTL 252
+++FAL+ GA + GK +P GIGA+IG GN ++G+++V N+R AFG PPA P L
Sbjct 187 FIRQFALRGGASLVGKAIPFGIGAVIGGTGNHILGRRVVANSRLAFGPPPAEIPAAL 243
>gi|343928042|ref|ZP_08767507.1| hypothetical protein GOALK_100_00460 [Gordonia alkanivorans NBRC
16433]
gi|343762050|dbj|GAA14433.1| hypothetical protein GOALK_100_00460 [Gordonia alkanivorans NBRC
16433]
Length=241
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 104/240 (44%), Positives = 151/240 (63%), Gaps = 17/240 (7%)
Query 21 EPDPQLAGTGGRPKVSTRALAQVIERSSRIQGPAAQAYVARLRRAHPGASPAKIVAKLEK 80
+P P+ AG +++R+ R+QGPA + YV LRR +P SPA+I+ +LEK
Sbjct 3 DPTPKPAGKAV------EVTGGILDRAQRLQGPAVKKYVDSLRRKYPDDSPAQIIERLEK 56
Query 81 RFLSVVTASGAAVGAAATLPGIGTLAAWFAAAGEVVVFLEATALFVLALASVHAIPLDHR 140
R+L+ VT SG AVGAAA +PG+GT+ A+ A G+ FLEA+AL L++A VH I +
Sbjct 57 RYLNAVTGSGGAVGAAAAVPGVGTMTAFGAMTGDTAFFLEASALLALSIAEVHGIGVHET 116
Query 141 ERRRALVLAVLVGDNTT-----AVADLLGPGRTSGGWVSETMASLPLPAISSLNSRMLKY 195
+RR++LVLAV +G+ V GP R GG A+LP AI+ LN ++
Sbjct 117 DRRKSLVLAVALGEEGVLALGRVVGTRGGPLRRLGG------AALPSGAITKLNKTLVNK 170
Query 196 VVKRFALKRGALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARSAFGTPPARWPVTLHVL 255
+V+++A++R L+FGKL+P GIGA+IG G+R +G+K+V NAR AFG PA W + V+
Sbjct 171 LVRKYAIRRAPLIFGKLMPAGIGAVIGGAGSRALGRKVVNNAREAFGPAPAFWVLDAEVV 230
>gi|163841859|ref|YP_001626264.1| lactam utilization protein LAMB [Renibacterium salmoninarum ATCC
33209]
gi|162955335|gb|ABY24850.1| lactam utilization protein LAMB [Renibacterium salmoninarum ATCC
33209]
Length=528
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 87/213 (41%), Positives = 133/213 (63%), Gaps = 6/213 (2%)
Query 39 ALAQVIERSSRIQGPAAQAYVARLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVGAAAT 98
AL ++++ Q P QA + RLRR P ASPA++ KL++ F++ VT SGAA+GA A
Sbjct 27 ALQSALQKAVESQRPVVQANLRRLRRKFPHASPAELSLKLDREFINTVTGSGAAIGATAI 86
Query 99 LPGIGTLAAWFAAAGEVVVFLEATALFVLALASVHAIPLDHRERRRALVLAVLVGDNTTA 158
+PGIGT+A+ +A V+F+EATAL+ L++A +H + L ER R V+A+++G+ TA
Sbjct 87 IPGIGTIASLGISAAATVIFMEATALYALSIAELHGVHLQDPERARTAVMAIMLGEEGTA 146
Query 159 V-----ADLLGPGRTS-GGWVSETMASLPLPAISSLNSRMLKYVVKRFALKRGALMFGKL 212
+ LG G + W S ++P A+ + +R+ K +KR L +G+ M G+L
Sbjct 147 LMQSFAGHALGRGASPVSAWGSALTKNVPASAMKMVGNRIQKMFIKRMVLNQGSAMLGRL 206
Query 213 VPMGIGAIIGAIGNRLVGKKLVRNARSAFGTPP 245
VP GIGA+IG GN ++G+ +VR + AFG PP
Sbjct 207 VPFGIGAVIGGAGNLMMGRSVVRATKIAFGPPP 239
>gi|326382059|ref|ZP_08203752.1| hypothetical protein SCNU_03907 [Gordonia neofelifaecis NRRL
B-59395]
gi|326199485|gb|EGD56666.1| hypothetical protein SCNU_03907 [Gordonia neofelifaecis NRRL
B-59395]
Length=265
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 106/265 (40%), Positives = 152/265 (58%), Gaps = 23/265 (8%)
Query 4 RRIRSWKRFDNRSANAAEP--------DPQLAGTGGRPKVSTRALAQVIERSSRIQGPAA 55
RR +S R D R+ A DPQ +G K S L +I+++ R+Q PA
Sbjct 2 RRSKSVARQDRRADEPAPSSVPSTTAVDPQKSG-----KSSLLVLTGLIDKAQRLQQPAV 56
Query 56 QAYVARLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVGAAATLPGIGTLAAWFAAAGEV 115
YV R+RR +P P +++ +LEK +L VTASG AVGA A +PG+GTL A A E
Sbjct 57 AKYVRRIRRKYPDEGPEQVIRRLEKHYLRTVTASGGAVGATAAVPGVGTLTAVSAITAES 116
Query 116 VVFLEATALFVLALASVHAIPLDHRERRRALVLAVLVGDNTTAVADLLGPGRTSGGWVSE 175
+F+EA+AL LA+A VH I ERR+ALVLAV +G+ V G+ G S+
Sbjct 117 ALFIEASALLALAIAEVHGIAPTDGERRKALVLAVALGEEGATVV-----GKALGARSSD 171
Query 176 TMASLPLPAI-----SSLNSRMLKYVVKRFALKRGALMFGKLVPMGIGAIIGAIGNRLVG 230
+A L +P I +++N + +K+F + + ++ GKLVP GIGA+IG +GNR +G
Sbjct 172 AIAKLGVPGIPGANLNTINRALGNKFIKKFTIGKAPVVMGKLVPGGIGAVIGGVGNRALG 231
Query 231 KKLVRNARSAFGTPPARWPVTLHVL 255
+++RN+R AFG PP W V V+
Sbjct 232 SRVIRNSREAFGPPPHFWDVDGEVI 256
>gi|25027749|ref|NP_737803.1| hypothetical protein CE1193 [Corynebacterium efficiens YS-314]
gi|259506851|ref|ZP_05749751.1| hypothetical membrane protein [Corynebacterium efficiens YS-314]
gi|23493032|dbj|BAC18003.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
gi|259165577|gb|EEW50131.1| hypothetical membrane protein [Corynebacterium efficiens YS-314]
Length=237
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 79/234 (34%), Positives = 127/234 (55%), Gaps = 11/234 (4%)
Query 18 NAAEPDPQL----AGTGGRPKVSTRALAQVIERSSRIQGPAAQAYVARLRRAHPGASPAK 73
+A DPQ AG GG+ L ++R+ +Q A +AYVARL+R +P SP +
Sbjct 10 DAINSDPQSVEDNAGWGGK------LLIPALDRAVHMQTGAIEAYVARLKRKNPDHSPQQ 63
Query 74 IVAKLEKRFLSVVTASGAAVGAAATLPGIGTLAAWFAAAGEVVVFLEATALFVLALASVH 133
I ++ + T SGA+VG A +PGIG L A + E +VFL+A A + +A A +
Sbjct 64 IQKIMDDHLKRIATGSGASVGLTAAIPGIGFLTGALAISAESLVFLDAVAFYTMASAHLR 123
Query 134 AIPLDHRERRRALVLAVLVGDNTTAVAD-LLGPGRTSGGWVSETMASLPLPAISSLNSRM 192
+ + H ERRRAL+L VL+G TA+ D +G + ++ + ++ +NSR+
Sbjct 124 GVDISHPERRRALILVVLLGSQGTALVDAAVGDISKKRALPAANISRFSISGLADVNSRL 183
Query 193 LKYVVKRFALKRGALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARSAFGTPPA 246
L+ +KR + GK++P+G+GA++G I NR + + + N + G PA
Sbjct 184 LRMAIKRLGRRFRGAWLGKILPLGVGAVVGTIANRKLASRAITNVGQSLGPLPA 237
>gi|325961880|ref|YP_004239786.1| hypothetical protein Asphe3_04370 [Arthrobacter phenanthrenivorans
Sphe3]
gi|323467967|gb|ADX71652.1| hypothetical protein Asphe3_04370 [Arthrobacter phenanthrenivorans
Sphe3]
Length=268
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 92/258 (36%), Positives = 146/258 (57%), Gaps = 16/258 (6%)
Query 3 ARRIRSWKRFDNRSANAAEPDPQLAGTGGRPKVSTRALAQVIERSSRIQGPAAQAYVARL 62
A+R R +A+ A D + G+PK ++ ++ IQ P AY+ RL
Sbjct 2 AKRSNPAVRIAQETAHNAVFDAE-----GKPKPGVH---NMLLKAVEIQRPLVVAYIRRL 53
Query 63 RRAHPGASPAKIVAKLEKRFLSVVTASGAAVGAAATLPGIGTLAAWFAAAGEVVVFLEAT 122
++ HP A+ A++ LE+ +L VT GA VGA A +PG+GT+A+ +A V FLEAT
Sbjct 54 QKRHPRATAAQLADILERDYLRAVTGGGAVVGATAVVPGVGTVASLGLSAAATVGFLEAT 113
Query 123 ALFVLALASVHAIPLDHRERRRALVLAVLVGDNTTAVADLLGPGRTSGGWVSETMA---- 178
AL+ +LA +H I L + E+ +V+A+++G+ TA+ LG G+ +G S T A
Sbjct 114 ALYSTSLAELHGIRLTNPEKASTMVMAIMLGEEGTALLGTLG-GQAAGKGTSPTKAWGNV 172
Query 179 ---SLPLPAISSLNSRMLKYVVKRFALKRGALMFGKLVPMGIGAIIGAIGNRLVGKKLVR 235
S+P+P S+ SR+ K +K ++G +FG+ +P GIGA++G GN ++G+ +V
Sbjct 173 LSKSMPVPGFGSIRSRIQKAFLKNLLKRQGTALFGRALPFGIGAVVGGAGNLIMGRAVVA 232
Query 236 NARSAFGTPPARWPVTLH 253
NA+ AFG P P L+
Sbjct 233 NAKEAFGPMPDTIPGELN 250
>gi|19552357|ref|NP_600359.1| hypothetical protein NCgl1086 [Corynebacterium glutamicum ATCC
13032]
gi|62390021|ref|YP_225423.1| hypothetical protein cg1282 [Corynebacterium glutamicum ATCC
13032]
gi|21323898|dbj|BAB98524.1| Hypothetical membrane protein [Corynebacterium glutamicum ATCC
13032]
gi|41325357|emb|CAF19837.1| conserved hypothetical protein [Corynebacterium glutamicum ATCC
13032]
Length=239
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/215 (34%), Positives = 123/215 (58%), Gaps = 3/215 (1%)
Query 36 STRALAQVIERSSRIQGPAAQAYVARLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVGA 95
S + L + +++++ +Q A + Y++ LR+ +P +PA++ ++K F+ + T SGA VG
Sbjct 26 SGKYLIRALDKAAHMQTGAIEGYISWLRKHNPEKTPAQLQVLVDKHFMRLATGSGAGVGM 85
Query 96 AATLPGIGTLAAWFAAAGEVVVFLEATALFVLALASVHAIPLDHRERRRALVLAVLVGDN 155
AA +PGIG + A E +VFL+A A + +A A + I + H ERRR L+L VL+G
Sbjct 86 AAAVPGIGFVTGALAVGAESLVFLDAAAFYTMASAHLRGIDIRHPERRRGLILVVLLGTA 145
Query 156 TTAVADLLGPGRTSGGWVSETMA--SLPLPAISSLNSRMLKYVVKRFALKRGALMFGKLV 213
A+ D G G S + +A + + +N R+++Y VK + + + + GK++
Sbjct 146 GKAIVD-AGVGDLSKKNHAPGIAISRFNIGGLMEVNGRLMRYAVKEVSKRFRSALIGKIL 204
Query 214 PMGIGAIIGAIGNRLVGKKLVRNARSAFGTPPARW 248
P GIGA++G + NR + K+ V NA + G P +
Sbjct 205 PFGIGAVLGTMANRKIAKRTVGNAYDSLGPLPTHF 239
>gi|145295274|ref|YP_001138095.1| hypothetical protein cgR_1215 [Corynebacterium glutamicum R]
gi|140845194|dbj|BAF54193.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344045752|gb|EGV41422.1| hypothetical protein CgS9114_03518 [Corynebacterium glutamicum
S9114]
Length=239
Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 71/215 (34%), Positives = 122/215 (57%), Gaps = 3/215 (1%)
Query 36 STRALAQVIERSSRIQGPAAQAYVARLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVGA 95
S + L + +++++ +Q A + Y++ LR+ +P +PA++ ++K F+ + T SGA VG
Sbjct 26 SGKYLIRALDKAAHMQTGAIEGYISWLRKHNPEKTPAQLQVLVDKHFMRLATGSGAGVGM 85
Query 96 AATLPGIGTLAAWFAAAGEVVVFLEATALFVLALASVHAIPLDHRERRRALVLAVLVGDN 155
AA +PGIG + A E +VFL+A A + +A A + I + H ERRR L+L VL+G
Sbjct 86 AAAVPGIGFVTGALAVGAESLVFLDAAAFYTMASAHLRGIDIRHPERRRGLILVVLLGTA 145
Query 156 TTAVADLLGPGRTSGGWVSETMA--SLPLPAISSLNSRMLKYVVKRFALKRGALMFGKLV 213
A+ D G G S + +A + + +N R+++Y VK + + + GK++
Sbjct 146 GKAIVD-AGVGDLSKKNHAPGIAISRFNIGGLMEVNGRLMRYAVKEVSKRFRSAWIGKIL 204
Query 214 PMGIGAIIGAIGNRLVGKKLVRNARSAFGTPPARW 248
P GIGA++G + NR + K+ V NA + G P +
Sbjct 205 PFGIGAVLGTMANRKIAKRTVGNAYDSLGPLPTHF 239
>gi|220911319|ref|YP_002486628.1| hypothetical protein Achl_0540 [Arthrobacter chlorophenolicus
A6]
gi|219858197|gb|ACL38539.1| conserved hypothetical protein [Arthrobacter chlorophenolicus
A6]
Length=268
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 82/229 (36%), Positives = 133/229 (59%), Gaps = 11/229 (4%)
Query 31 GRPKVSTRALAQVIERSSRIQGPAAQAYVARLRRAHPGASPAKIVAKLEKRFLSVVTASG 90
G+PK ++ ++ IQ P AY+ RL++ HP A+ A++ LE+ +L VT G
Sbjct 25 GKPKPGVH---NMLLKAVEIQRPLVLAYIRRLQKKHPQATAAQLAGILERDYLRAVTGGG 81
Query 91 AAVGAAATLPGIGTLAAWFAAAGEVVVFLEATALFVLALASVHAIPLDHRERRRALVLAV 150
A VGA A +PG+GT+A+ +A V FLEATAL+ +LA +H I L + E+ +V+A+
Sbjct 82 AIVGATAVVPGVGTVASLGLSAAATVGFLEATALYATSLAELHGIRLTNPEKASTMVMAI 141
Query 151 LVGDNTTAVADLLGPGRTSGG-------WVSETMASLPLPAISSLNSRMLKYVVKRFALK 203
++G+ TA+ L G+ +G W S SLP+P S++ +R+ + +K +
Sbjct 142 MLGEEGTALLGTL-SGQMAGNGAGATKQWGSVLSKSLPMPGFSTIRNRIQRAFLKNLLKR 200
Query 204 RGALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARSAFGTPPARWPVTL 252
+G + G+ +P GIGA++G GN ++G+ +V NA+ AFG P P L
Sbjct 201 QGTALLGRALPFGIGAVVGGAGNLVMGRAVVANAKEAFGPMPDSLPGEL 249
>gi|260905855|ref|ZP_05914177.1| hypothetical protein BlinB_11019 [Brevibacterium linens BL2]
Length=325
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/208 (36%), Positives = 119/208 (58%), Gaps = 9/208 (4%)
Query 50 IQGPAAQAYVARLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVGAAATLPGIGTLAAWF 109
+Q P A AYV LRR +P A+P +++ + + +L++ T+ GAAVGA A +PG+GT AA
Sbjct 39 VQRPVALAYVRSLRRKNPEATPEELIKIIRRHYLTLTTSGGAAVGATAAVPGLGTTAALG 98
Query 110 AAAGEVVVFLEATALFVLALASVHAIPLDHRERRRALVLAVLVGDNTTAVADLLGPGRTS 169
A E FLE TALF A++ +H +P+ R ALVL +++G + + + +
Sbjct 99 VATAETAGFLEGTALFAQAISEIHGLPVQDANRANALVLGLMLGKDGKNLVQRF--NKQA 156
Query 170 GG-------WVSETMASLPLPAISSLNSRMLKYVVKRFALKRGALMFGKLVPMGIGAIIG 222
GG W S LP P + L ++ K +++FA + G + G+L+P GIGAIIG
Sbjct 157 GGTESMFSEWGSTVTKQLPAPVVDLLLRKLRKTFIRKFAARAGGSLVGRLLPFGIGAIIG 216
Query 223 AIGNRLVGKKLVRNARSAFGTPPARWPV 250
+ N + +K+ ++ AFG+ P +P+
Sbjct 217 GVVNAQMSRKVADESKEAFGSAPTIFPL 244
>gi|88856288|ref|ZP_01130947.1| hypothetical protein A20C1_00070 [marine actinobacterium PHSC20C1]
gi|88814372|gb|EAR24235.1| hypothetical protein A20C1_00070 [marine actinobacterium PHSC20C1]
Length=302
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/221 (39%), Positives = 132/221 (60%), Gaps = 16/221 (7%)
Query 44 IERSSRIQGPAAQAYVARLRRAHPGASPAKIVAKLEKRFLSVVTASGAAVGAAATLPGIG 103
I+R +Q P A++ +RR+ P A+P +I+A LE+R+LS VT GA VGA+A +P +G
Sbjct 6 IDRVLTVQRPVVLAHIRSIRRSKPQATPDEIIAVLERRYLSAVTTGGALVGASAAIPAVG 65
Query 104 TLAAWFAAAGEVVVFLEATALFVLALASVHAIPLDHRERRRALVLAVLVGDNTTAVADLL 163
T A+ + E FLEA+ALF ++ VH I +D +R RALV+ +++G TA +DL+
Sbjct 66 TGASLALSGVETAGFLEASALFAQSVTEVHGIVVDDPDRARALVMTMVLG---TAGSDLV 122
Query 164 ----------GPGRTSGGWVSETMAS-LPLPAISSLNSRMLKYVVKRFALKRGALMFGKL 212
GP R++ + ET+A +P I + R+ +K+FA +G + G+L
Sbjct 123 KQLAAQATGSGPARSA--YWGETLAKGVPSALIGPIADRIKHTFLKKFAAAQGTNIVGRL 180
Query 213 VPMGIGAIIGAIGNRLVGKKLVRNARSAFGTPPARWPVTLH 253
VP GIGA+IG GN ++G++++R AR FG PA P L
Sbjct 181 VPFGIGAVIGGGGNHILGRQIIRTARQGFGPAPATLPAWLE 221
>gi|288920034|ref|ZP_06414354.1| stress protein [Frankia sp. EUN1f]
gi|288348598|gb|EFC82855.1| stress protein [Frankia sp. EUN1f]
Length=398
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/234 (39%), Positives = 133/234 (57%), Gaps = 10/234 (4%)
Query 21 EPDPQLAGTGGRPKVS----TRALAQVIERSSRIQGPAAQAYVARLRRAHPGASPAKIVA 76
EPD AGT G + S +RAL +++R+ +Q P A+ +V RLRR P A+P +IV
Sbjct 167 EPDLGAAGTSGGAEESDSKPSRALG-LLDRALELQAPLAERHVDRLRRNRPDATPHQIVG 225
Query 77 KLEKRFLSVVTASGAAVGAAATLPGIGTLAAWFAAAGEVVVFLEATALFVLALASVHAIP 136
+L + ++G VGAAA PG+GT A A+ GE V FL AT L++LA A I
Sbjct 226 RLNAELRAATISAGVGVGAAAAAPGVGTGVALAASGGEAVAFLNATVLYILARAEAQGIK 285
Query 137 LDHRERRRALVLAVLVGDNTTAVADLLGP--GRTSGGWVSETMASLPLPAISSLNSRMLK 194
+D E RR LV+A+++GD A A +G RT W + + +P I+++N +
Sbjct 286 IDDVECRRTLVMAIMLGD---AGAKGIGQVAERTGQHWARQIVRGIPQAKINAINRVLGP 342
Query 195 YVVKRFALKRGALMFGKLVPMGIGAIIGAIGNRLVGKKLVRNARSAFGTPPARW 248
+ V ++ K+G ++ GK+VP GIGA+IG N L + +++ A AFG P W
Sbjct 343 HFVTKYGAKKGVIVLGKVVPFGIGAVIGGAANGLFSQGIIKAADRAFGNPSQSW 396
>gi|325068282|ref|ZP_08126955.1| hypothetical protein AoriK_10686 [Actinomyces oris K20]
Length=232
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 82/214 (39%), Positives = 122/214 (58%), Gaps = 9/214 (4%)
Query 31 GRPKVSTRALAQVIER-SSRIQGPAAQAYVARLRRAHPGASPAKIVAKLEKRFLSVVTAS 89
GR RAL + I +SRI+ VAR+RR PGA A++V RF S
Sbjct 7 GRSTALERALDKAIAIPASRIE-----ERVARMRRDRPGADTAELVEIAGSRFRRDAGLS 61
Query 90 GAAVGAAATLPGIGTLAAWFAAAGEVVVFLEATALFVLALASVHAIPLDHRERRRALVLA 149
AVGA+A +P IGT AA G+ F+ + +VL +A + + + +RRRALVL+
Sbjct 62 SGAVGASAAIPAIGTGAAAALTVGQSAAFMASAVTYVLTVAEIQGVHVVDADRRRALVLS 121
Query 150 VLVG-DNTTAVADLLGPGRTSGGWVSETMASLPLPAISSLNSRMLKYVVKRFALKRGALM 208
L+G + + AV LG +S W ++ + +PLP++ S+N+R++K V KR A K GAL
Sbjct 122 ALLGKEGSEAVQGQLGL--SSMFWAAQVLMQMPLPSVKSINARLIKRVAKRSAAKGGALA 179
Query 209 FGKLVPMGIGAIIGAIGNRLVGKKLVRNARSAFG 242
G+L+P GIGA IG G R + +++ A++A G
Sbjct 180 LGRLLPFGIGAAIGWSGGRALANQVIEGAQAALG 213
Lambda K H
0.321 0.133 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 391676602750
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40