BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1253 Length=563 Score E Sequences producing significant alignments: (Bits) Value gi|15608393|ref|NP_215769.1| cold-shock DEAD-box protein A [Myco... 1130 0.0 gi|339297875|gb|AEJ49985.1| cold-shock DEAD-box protein A [Mycob... 1130 0.0 gi|306783973|ref|ZP_07422295.1| cold shock deaD-box protein A de... 1129 0.0 gi|31792446|ref|NP_854939.1| cold-shock DEAD-box protein A [Myco... 1129 0.0 gi|339631320|ref|YP_004722962.1| DEAD/DEAH box helicase [Mycobac... 1127 0.0 gi|289573913|ref|ZP_06454140.1| cold shock deaD-box protein A de... 1127 0.0 gi|289442689|ref|ZP_06432433.1| cold shock deaD-box protein A de... 1127 0.0 gi|167969576|ref|ZP_02551853.1| cold-shock deaD-box protein A de... 1126 0.0 gi|340626266|ref|YP_004744718.1| putative cold-shock DEAD-box pr... 1115 0.0 gi|183984161|ref|YP_001852452.1| cold-shock DEAD-box protein, De... 923 0.0 gi|240172264|ref|ZP_04750923.1| cold-shock DEAD-box protein, Dea... 910 0.0 gi|118462257|ref|YP_880643.1| ATP-dependent rna helicase, dead/d... 897 0.0 gi|336458594|gb|EGO37561.1| DNA/RNA helicase, superfamily II [My... 894 0.0 gi|41408619|ref|NP_961455.1| DeaD [Mycobacterium avium subsp. pa... 892 0.0 gi|254819463|ref|ZP_05224464.1| ATP-dependent rna helicase, dead... 891 0.0 gi|296170155|ref|ZP_06851752.1| ATP-dependent RNA helicase DeaD ... 891 0.0 gi|342862130|ref|ZP_08718773.1| ATP-dependent rna helicase, dead... 889 0.0 gi|254774280|ref|ZP_05215796.1| ATP-dependent rna helicase, dead... 864 0.0 gi|333989860|ref|YP_004522474.1| cold-shock DEAD-box protein Dea... 820 0.0 gi|169628494|ref|YP_001702143.1| cold-shock DEAD box protein A-l... 817 0.0 gi|108800931|ref|YP_641128.1| DEAD/DEAH box helicase-like protei... 811 0.0 gi|118470234|ref|YP_889292.1| ATP-dependent rna helicase, dead/d... 810 0.0 gi|315443280|ref|YP_004076159.1| DNA/RNA helicase, superfamily I... 805 0.0 gi|145222813|ref|YP_001133491.1| DEAD/DEAH box helicase domain-c... 803 0.0 gi|120405422|ref|YP_955251.1| DEAD/DEAH box helicase domain-cont... 781 0.0 gi|312138933|ref|YP_004006269.1| dead/deah box helicase [Rhodoco... 768 0.0 gi|226365506|ref|YP_002783289.1| ATP-dependent DEAD-box RNA heli... 763 0.0 gi|111023001|ref|YP_705973.1| cold-shock DEAD-box protein [Rhodo... 760 0.0 gi|226307581|ref|YP_002767541.1| ATP-dependent RNA helicase DeaD... 727 0.0 gi|54026656|ref|YP_120898.1| putative ATP-dependent RNA helicase... 726 0.0 gi|343924703|ref|ZP_08764245.1| ATP-dependent DEAD-box RNA helic... 717 0.0 gi|296139030|ref|YP_003646273.1| DEAD/DEAH box helicase [Tsukamu... 716 0.0 gi|262201927|ref|YP_003273135.1| DEAD/DEAH box helicase [Gordoni... 695 0.0 gi|325676644|ref|ZP_08156320.1| ATP-dependent RNA helicase DeaD ... 689 0.0 gi|333920975|ref|YP_004494556.1| putative ATP-dependent RNA heli... 677 0.0 gi|319950441|ref|ZP_08024356.1| ATP-dependent DEAD-box RNA helic... 671 0.0 gi|84498694|ref|ZP_00997447.1| ATP-dependent RNA helicase [Janib... 658 0.0 gi|148272405|ref|YP_001221966.1| putative ATP-dependent RNA heli... 654 0.0 gi|119718818|ref|YP_925783.1| DEAD/DEAH box helicase domain-cont... 653 0.0 gi|237785892|ref|YP_002906597.1| ATP-dependent RNA helicase [Cor... 652 0.0 gi|317124106|ref|YP_004098218.1| ATP-dependent RNA helicase CsdA... 652 0.0 gi|88856286|ref|ZP_01130945.1| ATP-dependent RNA helicase [marin... 651 0.0 gi|312197808|ref|YP_004017869.1| DEAD/DEAH box helicase domain p... 651 0.0 gi|145295298|ref|YP_001138119.1| hypothetical protein cgR_1238 [... 649 0.0 gi|50954992|ref|YP_062280.1| ATP-dependent RNA helicase [Leifson... 648 0.0 gi|19552380|ref|NP_600382.1| putative helicase [Corynebacterium ... 647 0.0 gi|170782231|ref|YP_001710564.1| cold-shock DEAD-box RNA helicas... 645 0.0 gi|62390044|ref|YP_225446.1| superfamily II DNA/RNA helicase [Co... 645 0.0 gi|25027815|ref|NP_737869.1| putative cold shock DEAD-box protei... 640 0.0 gi|213964614|ref|ZP_03392814.1| cold-shock deAd box protein a [C... 638 0.0 >gi|15608393|ref|NP_215769.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis H37Rv] gi|15840699|ref|NP_335736.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis CDC1551] gi|148661040|ref|YP_001282563.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis H37Ra] 51 more sequence titles Length=563 Score = 1130 bits (2924), Expect = 0.0, Method: Compositional matrix adjust. Identities = 563/563 (100%), Positives = 563/563 (100%), Gaps = 0/563 (0%) Query 1 MAFPEYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTG 60 MAFPEYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTG Sbjct 1 MAFPEYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTG 60 Query 61 TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGS 120 TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGS Sbjct 61 TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGS 120 Query 121 SYAVQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERI 180 SYAVQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERI Sbjct 121 SYAVQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERI 180 Query 181 LSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDA 240 LSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDA Sbjct 181 LSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDA 240 Query 241 LTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGD 300 LTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGD Sbjct 241 LTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGD 300 Query 301 IDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELH 360 IDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELH Sbjct 301 IDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELH 360 Query 361 LLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHD 420 LLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHD Sbjct 361 LLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHD 420 Query 421 VPMADIAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH 480 VPMADIAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH Sbjct 421 VPMADIAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH 480 Query 481 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL 540 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL Sbjct 481 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL 540 Query 541 RPYRPPDAARRHNGGKPRRKHVG 563 RPYRPPDAARRHNGGKPRRKHVG Sbjct 541 RPYRPPDAARRHNGGKPRRKHVG 563 >gi|339297875|gb|AEJ49985.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis CCDC5180] Length=592 Score = 1130 bits (2923), Expect = 0.0, Method: Compositional matrix adjust. Identities = 563/563 (100%), Positives = 563/563 (100%), Gaps = 0/563 (0%) Query 1 MAFPEYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTG 60 MAFPEYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTG Sbjct 30 MAFPEYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTG 89 Query 61 TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGS 120 TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGS Sbjct 90 TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGS 149 Query 121 SYAVQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERI 180 SYAVQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERI Sbjct 150 SYAVQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERI 209 Query 181 LSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDA 240 LSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDA Sbjct 210 LSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDA 269 Query 241 LTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGD 300 LTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGD Sbjct 270 LTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGD 329 Query 301 IDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELH 360 IDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELH Sbjct 330 IDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELH 389 Query 361 LLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHD 420 LLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHD Sbjct 390 LLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHD 449 Query 421 VPMADIAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH 480 VPMADIAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH Sbjct 450 VPMADIAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH 509 Query 481 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL 540 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL Sbjct 510 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL 569 Query 541 RPYRPPDAARRHNGGKPRRKHVG 563 RPYRPPDAARRHNGGKPRRKHVG Sbjct 570 RPYRPPDAARRHNGGKPRRKHVG 592 >gi|306783973|ref|ZP_07422295.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu003] gi|308331209|gb|EFP20060.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis SUMu003] Length=563 Score = 1129 bits (2919), Expect = 0.0, Method: Compositional matrix adjust. Identities = 562/563 (99%), Positives = 562/563 (99%), Gaps = 0/563 (0%) Query 1 MAFPEYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTG 60 MAFPEYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTG Sbjct 1 MAFPEYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTG 60 Query 61 TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGS 120 TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGS Sbjct 61 TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGS 120 Query 121 SYAVQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERI 180 SYAVQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERI Sbjct 121 SYAVQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERI 180 Query 181 LSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDA 240 LSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAV ENISQSYIQVARKMDA Sbjct 181 LSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVDENISQSYIQVARKMDA 240 Query 241 LTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGD 300 LTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGD Sbjct 241 LTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGD 300 Query 301 IDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELH 360 IDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELH Sbjct 301 IDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELH 360 Query 361 LLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHD 420 LLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHD Sbjct 361 LLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHD 420 Query 421 VPMADIAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH 480 VPMADIAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH Sbjct 421 VPMADIAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH 480 Query 481 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL 540 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL Sbjct 481 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL 540 Query 541 RPYRPPDAARRHNGGKPRRKHVG 563 RPYRPPDAARRHNGGKPRRKHVG Sbjct 541 RPYRPPDAARRHNGGKPRRKHVG 563 >gi|31792446|ref|NP_854939.1| cold-shock DEAD-box protein A [Mycobacterium bovis AF2122/97] gi|121637182|ref|YP_977405.1| putative cold-shock dead-box protein a homolog deaD [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224989657|ref|YP_002644344.1| putative cold-shock dead-box protein a homolog [Mycobacterium bovis BCG str. Tokyo 172] 8 more sequence titles Length=563 Score = 1129 bits (2919), Expect = 0.0, Method: Compositional matrix adjust. Identities = 562/563 (99%), Positives = 563/563 (100%), Gaps = 0/563 (0%) Query 1 MAFPEYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTG 60 MAFPEYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTG Sbjct 1 MAFPEYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTG 60 Query 61 TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGS 120 TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGS Sbjct 61 TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGS 120 Query 121 SYAVQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERI 180 SYAVQLAGLRRGAQVVVGTPGR+IDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERI Sbjct 121 SYAVQLAGLRRGAQVVVGTPGRVIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERI 180 Query 181 LSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDA 240 LSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDA Sbjct 181 LSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDA 240 Query 241 LTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGD 300 LTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGD Sbjct 241 LTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGD 300 Query 301 IDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELH 360 IDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELH Sbjct 301 IDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELH 360 Query 361 LLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHD 420 LLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHD Sbjct 361 LLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHD 420 Query 421 VPMADIAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH 480 VPMADIAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH Sbjct 421 VPMADIAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH 480 Query 481 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL 540 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL Sbjct 481 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL 540 Query 541 RPYRPPDAARRHNGGKPRRKHVG 563 RPYRPPDAARRHNGGKPRRKHVG Sbjct 541 RPYRPPDAARRHNGGKPRRKHVG 563 >gi|339631320|ref|YP_004722962.1| DEAD/DEAH box helicase [Mycobacterium africanum GM041182] gi|339330676|emb|CCC26344.1| putative cold-shock DEAD-box protein A homolog DEAD (ATP-dependent RNA helicase deaD homolog) [Mycobacterium africanum GM041182] Length=563 Score = 1127 bits (2915), Expect = 0.0, Method: Compositional matrix adjust. Identities = 561/563 (99%), Positives = 563/563 (100%), Gaps = 0/563 (0%) Query 1 MAFPEYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTG 60 MAFPEYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTG Sbjct 1 MAFPEYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTG 60 Query 61 TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGS 120 TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGS Sbjct 61 TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGS 120 Query 121 SYAVQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERI 180 SYAVQLAGLRRGAQVVVGTPGR+IDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERI Sbjct 121 SYAVQLAGLRRGAQVVVGTPGRVIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERI 180 Query 181 LSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDA 240 LSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDA Sbjct 181 LSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDA 240 Query 241 LTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGD 300 LTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGD Sbjct 241 LTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGD 300 Query 301 IDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELH 360 IDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELH Sbjct 301 IDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELH 360 Query 361 LLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHD 420 LLKAIEKATR+TLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHD Sbjct 361 LLKAIEKATRKTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHD 420 Query 421 VPMADIAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH 480 VPMADIAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH Sbjct 421 VPMADIAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH 480 Query 481 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL 540 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL Sbjct 481 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL 540 Query 541 RPYRPPDAARRHNGGKPRRKHVG 563 RPYRPPDAARRHNGGKPRRKHVG Sbjct 541 RPYRPPDAARRHNGGKPRRKHVG 563 >gi|289573913|ref|ZP_06454140.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis K85] gi|289538344|gb|EFD42922.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis K85] Length=563 Score = 1127 bits (2914), Expect = 0.0, Method: Compositional matrix adjust. Identities = 561/563 (99%), Positives = 563/563 (100%), Gaps = 0/563 (0%) Query 1 MAFPEYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTG 60 MAFPEYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTG Sbjct 1 MAFPEYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTG 60 Query 61 TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGS 120 TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGS Sbjct 61 TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGS 120 Query 121 SYAVQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERI 180 SYAVQLAGLRRGAQVVVGTPGR+IDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERI Sbjct 121 SYAVQLAGLRRGAQVVVGTPGRVIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERI 180 Query 181 LSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDA 240 LSETP+YKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDA Sbjct 181 LSETPKYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDA 240 Query 241 LTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGD 300 LTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGD Sbjct 241 LTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGD 300 Query 301 IDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELH 360 IDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELH Sbjct 301 IDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELH 360 Query 361 LLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHD 420 LLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHD Sbjct 361 LLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHD 420 Query 421 VPMADIAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH 480 VPMADIAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH Sbjct 421 VPMADIAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH 480 Query 481 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL 540 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL Sbjct 481 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL 540 Query 541 RPYRPPDAARRHNGGKPRRKHVG 563 RPYRPPDAARRHNGGKPRRKHVG Sbjct 541 RPYRPPDAARRHNGGKPRRKHVG 563 >gi|289442689|ref|ZP_06432433.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T46] gi|289569259|ref|ZP_06449486.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T17] gi|289749796|ref|ZP_06509174.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T92] gi|289415608|gb|EFD12848.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T46] gi|289543013|gb|EFD46661.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T17] gi|289690383|gb|EFD57812.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T92] Length=563 Score = 1127 bits (2914), Expect = 0.0, Method: Compositional matrix adjust. Identities = 561/563 (99%), Positives = 563/563 (100%), Gaps = 0/563 (0%) Query 1 MAFPEYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTG 60 MAFPEYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTG Sbjct 1 MAFPEYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTG 60 Query 61 TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGS 120 TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGS Sbjct 61 TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGS 120 Query 121 SYAVQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERI 180 SYAVQLAGLRRGAQVVVGTPGR+IDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERI Sbjct 121 SYAVQLAGLRRGAQVVVGTPGRVIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERI 180 Query 181 LSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDA 240 LSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDA Sbjct 181 LSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDA 240 Query 241 LTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGD 300 LTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGD Sbjct 241 LTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGD 300 Query 301 IDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELH 360 IDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELH Sbjct 301 IDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELH 360 Query 361 LLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHD 420 LLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLV+EYEREHD Sbjct 361 LLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVKEYEREHD 420 Query 421 VPMADIAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH 480 VPMADIAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH Sbjct 421 VPMADIAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH 480 Query 481 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL 540 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL Sbjct 481 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL 540 Query 541 RPYRPPDAARRHNGGKPRRKHVG 563 RPYRPPDAARRHNGGKPRRKHVG Sbjct 541 RPYRPPDAARRHNGGKPRRKHVG 563 >gi|167969576|ref|ZP_02551853.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase) [Mycobacterium tuberculosis H37Ra] Length=563 Score = 1126 bits (2912), Expect = 0.0, Method: Compositional matrix adjust. Identities = 561/563 (99%), Positives = 561/563 (99%), Gaps = 0/563 (0%) Query 1 MAFPEYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTG 60 MAFPEYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTG Sbjct 1 MAFPEYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTG 60 Query 61 TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGS 120 TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGS Sbjct 61 TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGS 120 Query 121 SYAVQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERI 180 SYAVQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERI Sbjct 121 SYAVQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERI 180 Query 181 LSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDA 240 LSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDA Sbjct 181 LSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDA 240 Query 241 LTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGD 300 LTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGD Sbjct 241 LTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGD 300 Query 301 IDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELH 360 IDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELH Sbjct 301 IDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELH 360 Query 361 LLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHD 420 LLKAIEKATRQTLTEAQLPTVEDVNTQRV KFADSITNAL GPGIELFRRLVEEYEREHD Sbjct 361 LLKAIEKATRQTLTEAQLPTVEDVNTQRVPKFADSITNALAGPGIELFRRLVEEYEREHD 420 Query 421 VPMADIAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH 480 VPMADIAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH Sbjct 421 VPMADIAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH 480 Query 481 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL 540 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL Sbjct 481 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL 540 Query 541 RPYRPPDAARRHNGGKPRRKHVG 563 RPYRPPDAARRHNGGKPRRKHVG Sbjct 541 RPYRPPDAARRHNGGKPRRKHVG 563 >gi|340626266|ref|YP_004744718.1| putative cold-shock DEAD-box protein A [Mycobacterium canettii CIPT 140010059] gi|340004456|emb|CCC43599.1| putative cold-shock DEAD-box protein A homolog DEAD (ATP-dependent RNA helicase deaD homolog) [Mycobacterium canettii CIPT 140010059] Length=563 Score = 1115 bits (2885), Expect = 0.0, Method: Compositional matrix adjust. Identities = 555/563 (99%), Positives = 558/563 (99%), Gaps = 0/563 (0%) Query 1 MAFPEYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTG 60 MAFPEYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTG Sbjct 1 MAFPEYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTG 60 Query 61 TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGS 120 TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGS Sbjct 61 TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGS 120 Query 121 SYAVQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERI 180 YAVQLAGL RGAQVVVGTPGR+IDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERI Sbjct 121 PYAVQLAGLSRGAQVVVGTPGRVIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERI 180 Query 181 LSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDA 240 LSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDA Sbjct 181 LSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDA 240 Query 241 LTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGD 300 LTRVLEVEPFEAMIVFVRT+QATEEIAEKLRARGFSAAAI+GDVPQAQRERTITALRDGD Sbjct 241 LTRVLEVEPFEAMIVFVRTRQATEEIAEKLRARGFSAAAINGDVPQAQRERTITALRDGD 300 Query 301 IDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELH 360 IDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELH Sbjct 301 IDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELH 360 Query 361 LLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHD 420 LLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHD Sbjct 361 LLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHD 420 Query 421 VPMADIAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH 480 VPMADIAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKRR DLTTYRVAVGKRH Sbjct 421 VPMADIAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKRRADLTTYRVAVGKRH 480 Query 481 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL 540 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRAT KKLAQTRISGVLIDL Sbjct 481 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATFKKLAQTRISGVLIDL 540 Query 541 RPYRPPDAARRHNGGKPRRKHVG 563 RPYRPPDAARRHNGGKPRR HVG Sbjct 541 RPYRPPDAARRHNGGKPRRNHVG 563 >gi|183984161|ref|YP_001852452.1| cold-shock DEAD-box protein, DeaD [Mycobacterium marinum M] gi|183177487|gb|ACC42597.1| cold-shock DEAD-Box protein, DeaD [Mycobacterium marinum M] Length=571 Score = 923 bits (2385), Expect = 0.0, Method: Compositional matrix adjust. Identities = 476/571 (84%), Positives = 511/571 (90%), Gaps = 8/571 (1%) Query 1 MAFPEYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTG 60 MA PE PA ATFADLQIHP V+RAI DVGYESPT IQAATIPALMAGSDVVGLAQTG Sbjct 1 MANPENPPAVPPATFADLQIHPSVMRAIADVGYESPTGIQAATIPALMAGSDVVGLAQTG 60 Query 61 TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGS 120 TGKTAAFAIP+LSKID TS QALVL PTRELALQVAEAF RYGA+LS+LNVLP+YGGS Sbjct 61 TGKTAAFAIPILSKIDTTSTATQALVLAPTRELALQVAEAFSRYGAHLSRLNVLPVYGGS 120 Query 121 SYAVQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERI 180 SYA+QLAGLRRGAQVVVGTPGR+IDHLER TLDLSRVD+LVLDEADEMLTMGFA+DVERI Sbjct 121 SYAIQLAGLRRGAQVVVGTPGRVIDHLERRTLDLSRVDYLVLDEADEMLTMGFAEDVERI 180 Query 181 LSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKM 238 LSETPEYKQVALFSATMPPAIRK++ +YLHDP EV +AKTA AENISQ YIQVA RKM Sbjct 181 LSETPEYKQVALFSATMPPAIRKITTRYLHDPLEVKSEAKTATAENISQRYIQVAGPRKM 240 Query 239 DALTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRD 298 DALTRVLEVEPFEAMIVFVRTKQATEE+AEKLRARGFSAAAI+GD+PQ QRERTITALRD Sbjct 241 DALTRVLEVEPFEAMIVFVRTKQATEEVAEKLRARGFSAAAINGDIPQGQRERTITALRD 300 Query 299 GDIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRE 358 G IDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAAL+FVSPRE Sbjct 301 GGIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALLFVSPRE 360 Query 359 LHLLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYERE 418 HLLK IEKATRQTLTEA+LPTVEDVN QRVAKFADSIT+AL GIELFRRLVE+YERE Sbjct 361 RHLLKLIEKATRQTLTEAELPTVEDVNAQRVAKFADSITHALSNTGIELFRRLVEDYERE 420 Query 419 HDVPMADIAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKRRPD---LTTYRVA 475 H+VPMADIAAALA+Q R GE FL+APDPP +R R R +R +RP+RR +TYR++ Sbjct 421 HNVPMADIAAALALQSRDGEEFLLAPDPPPDQRERHPRNERKERPERRRSGGAFSTYRIS 480 Query 476 VGKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISG 535 VGKRHK+GPGAIVGAIANEGGLHRSDFG I IGPDFSLVELP KLPR TLKKL QTRISG Sbjct 481 VGKRHKVGPGAIVGAIANEGGLHRSDFGHITIGPDFSLVELPVKLPRETLKKLEQTRISG 540 Query 536 VLIDLRPYRPPD---AARRHNGGKPRRKHVG 563 VLI+LRP RP D ARR++GGKPRRK +G Sbjct 541 VLINLRPDRPADKAYKARRNDGGKPRRKRLG 571 >gi|240172264|ref|ZP_04750923.1| cold-shock DEAD-box protein, DeaD [Mycobacterium kansasii ATCC 12478] Length=570 Score = 910 bits (2352), Expect = 0.0, Method: Compositional matrix adjust. Identities = 463/571 (82%), Positives = 505/571 (89%), Gaps = 9/571 (1%) Query 1 MAFPEYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTG 60 M P+ P A TF DLQIHP VLRAI VGYESPTAIQAATIPALMAGSDVVGLAQTG Sbjct 1 MLTPDNMPVAPPDTFVDLQIHPSVLRAIAGVGYESPTAIQAATIPALMAGSDVVGLAQTG 60 Query 61 TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGS 120 TGKTAAFAIP+LSKID+TS QAL+L PTRELALQVAEAF RYGAYL +LNVLPIYGGS Sbjct 61 TGKTAAFAIPILSKIDVTSTATQALILAPTRELALQVAEAFSRYGAYLPKLNVLPIYGGS 120 Query 121 SYAVQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERI 180 SYAVQLAGLRRGAQ++VGTPGR+IDHLER TLDLSRVD+LVLDEADEML MGFA+DVERI Sbjct 121 SYAVQLAGLRRGAQIIVGTPGRVIDHLERGTLDLSRVDYLVLDEADEMLAMGFAEDVERI 180 Query 181 LSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKM 238 LS+TPEYKQVALFSATMPPAIRK++ KYLHDP EVT KAKTA AENISQ YIQVA RKM Sbjct 181 LSDTPEYKQVALFSATMPPAIRKITTKYLHDPLEVTSKAKTATAENISQRYIQVAGPRKM 240 Query 239 DALTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRD 298 DALTRVLEVEPFEAMIVFVRTKQATEE+AEKLRARGFSAAAI+GD+PQ QRERTITALR+ Sbjct 241 DALTRVLEVEPFEAMIVFVRTKQATEEVAEKLRARGFSAAAINGDIPQQQRERTITALRE 300 Query 299 G---DIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVS 355 G IDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGR GAAL+FVS Sbjct 301 GGPNGIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRPGAALLFVS 360 Query 356 PRELHLLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEY 415 PRE HLLKAIEKATRQT+TEA+LPTVEDVN QRVAKF+DSIT+AL PG+ LFR+LVE+Y Sbjct 361 PRERHLLKAIEKATRQTMTEAELPTVEDVNAQRVAKFSDSITDALAKPGVALFRKLVEDY 420 Query 416 EREHDVPMADIAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKRR---PDLTTY 472 EREHDVPMADIAAALA+Q R GEAFL+AP+PP RR+ ++ Q ++R P L+TY Sbjct 421 EREHDVPMADIAAALALQSRDGEAFLLAPEPPPERRSETKKPASDQHAEKRRNGPALSTY 480 Query 473 RVAVGKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTR 532 R++VGKRHKIGPGAIVGAIANEGGLHRS+FG I IGPDFSLVELPAKLPRATLKKL TR Sbjct 481 RISVGKRHKIGPGAIVGAIANEGGLHRSEFGHISIGPDFSLVELPAKLPRATLKKLESTR 540 Query 533 ISGVLIDLRPYRPPDAARRHNGGKPRRKHVG 563 ISGVLI+LR P A+ R++ GKPRRK +G Sbjct 541 ISGVLINLRRDGPVKAS-RYDRGKPRRKRIG 570 >gi|118462257|ref|YP_880643.1| ATP-dependent rna helicase, dead/deah box family protein [Mycobacterium avium 104] gi|118163544|gb|ABK64441.1| ATP-dependent rna helicase, dead/deah box family protein [Mycobacterium avium 104] Length=566 Score = 897 bits (2317), Expect = 0.0, Method: Compositional matrix adjust. Identities = 459/566 (82%), Positives = 501/566 (89%), Gaps = 3/566 (0%) Query 1 MAFPEYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTG 60 M P+ S A++ TFADLQIHP VLRAI DVGYE+PT IQAATIPALMAGSDVVGLAQTG Sbjct 1 MTLPDSSTEAASPTFADLQIHPSVLRAIADVGYETPTGIQAATIPALMAGSDVVGLAQTG 60 Query 61 TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGS 120 TGKTAAFAIP+LSKID+ S QALVL PTRELALQVAEAF RYGA+L ++NVLPIYGGS Sbjct 61 TGKTAAFAIPILSKIDVASTATQALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYGGS 120 Query 121 SYAVQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERI 180 SYAVQLAGL+RGA VVVGTPGR+IDHLER TLDLS VD+LVLDEADEMLTMGFA++V+RI Sbjct 121 SYAVQLAGLKRGAHVVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRI 180 Query 181 LSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKM 238 LSETPEYKQVALFSATMPPAIRKL+AKYLHDP EV+ KAKT AENISQ YIQVA RKM Sbjct 181 LSETPEYKQVALFSATMPPAIRKLTAKYLHDPLEVSTKAKTTTAENISQRYIQVAGPRKM 240 Query 239 DALTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRD 298 DALTRVLEVEPFEAMIVFVRTKQATEE+AE+LRARGFSAAAI+GD+PQ QRERT+ AL+D Sbjct 241 DALTRVLEVEPFEAMIVFVRTKQATEEVAERLRARGFSAAAINGDIPQGQRERTVAALKD 300 Query 299 GDIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRE 358 G IDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSG AL+FVSPRE Sbjct 301 GGIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRE 360 Query 359 LHLLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYERE 418 HLLKAIEKATRQ LTEA+LPTVEDVN QRVAKFADSIT ALG PGI+LFR+LV++YERE Sbjct 361 RHLLKAIEKATRQPLTEAELPTVEDVNAQRVAKFADSITAALGAPGIDLFRKLVQDYERE 420 Query 419 HDVPMADIAAALAVQCRGGEAFLMA-PDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVG 477 HDVPMADIAAALAVQ R GE FLMA P R +RR+R ++P+ L TYR+AVG Sbjct 421 HDVPMADIAAALAVQSRDGEEFLMAPEPPRERRERHTERRERTEKPRSTRPLATYRIAVG 480 Query 478 KRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVL 537 KRHKIGPGAIVGAIANEGGLHRSDFG I IGPDFSLVELPAKLP++TLK+L QTRISGVL Sbjct 481 KRHKIGPGAIVGAIANEGGLHRSDFGHIAIGPDFSLVELPAKLPKSTLKRLEQTRISGVL 540 Query 538 IDLRPYRPPDAARRHNGGKPRRKHVG 563 I+L+P R AR +GGKPRRK+ G Sbjct 541 INLQPDRAAAKARGRDGGKPRRKYGG 566 >gi|336458594|gb|EGO37561.1| DNA/RNA helicase, superfamily II [Mycobacterium avium subsp. paratuberculosis S397] Length=566 Score = 894 bits (2311), Expect = 0.0, Method: Compositional matrix adjust. Identities = 459/566 (82%), Positives = 500/566 (89%), Gaps = 3/566 (0%) Query 1 MAFPEYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTG 60 M P+ S A++ TFADLQIHP VLRAI DVGYE+PT IQAATIPALMAGSDVVGLAQTG Sbjct 1 MTLPDSSTEAASPTFADLQIHPSVLRAIADVGYETPTGIQAATIPALMAGSDVVGLAQTG 60 Query 61 TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGS 120 TGKTAAFAIP+LSKID S QALVL PTRELALQVAEAF RYGA+L ++NVLPIYGGS Sbjct 61 TGKTAAFAIPILSKIDAASTATQALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYGGS 120 Query 121 SYAVQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERI 180 SYAVQLAGL+RGA VVVGTPGR+IDHLER TLDLS VD+LVLDEADEMLTMGFA++V+RI Sbjct 121 SYAVQLAGLKRGAHVVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRI 180 Query 181 LSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKM 238 LSETPEYKQVALFSATMPPAIRKL+AKYLHDP EV+ KAKT AENISQ YIQVA RKM Sbjct 181 LSETPEYKQVALFSATMPPAIRKLTAKYLHDPLEVSTKAKTTTAENISQRYIQVAGPRKM 240 Query 239 DALTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRD 298 DALTRVLEVEPFEAMIVFVRTKQATEE+AE+LRARGFSAAAI+GD+PQ QRERT+ AL+D Sbjct 241 DALTRVLEVEPFEAMIVFVRTKQATEEVAERLRARGFSAAAINGDIPQGQRERTVAALKD 300 Query 299 GDIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRE 358 G IDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSG AL+FVSPRE Sbjct 301 GGIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRE 360 Query 359 LHLLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYERE 418 HLLKAIEKATRQ LTEA+LPTVEDVN QRVAKFADSIT ALG PGI+LFR+LV++YERE Sbjct 361 RHLLKAIEKATRQPLTEAELPTVEDVNAQRVAKFADSITAALGAPGIDLFRKLVQDYERE 420 Query 419 HDVPMADIAAALAVQCRGGEAFLMA-PDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVG 477 HDVPMADIAAALAVQ R GE FLMA P R +RR+R ++P+ L TYR+AVG Sbjct 421 HDVPMADIAAALAVQSRDGEEFLMAPEPPRERRERHTERRERTEKPRSTRPLATYRIAVG 480 Query 478 KRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVL 537 KRHKIGPGAIVGAIANEGGLHRSDFG I IGPDFSLVELPAKLP++TLK+L QTRISGVL Sbjct 481 KRHKIGPGAIVGAIANEGGLHRSDFGHIAIGPDFSLVELPAKLPKSTLKRLEQTRISGVL 540 Query 538 IDLRPYRPPDAARRHNGGKPRRKHVG 563 I+L+P R AR +GGKPRRK+ G Sbjct 541 INLQPDRAAAKARGRDGGKPRRKYGG 566 >gi|41408619|ref|NP_961455.1| DeaD [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396977|gb|AAS04838.1| DeaD [Mycobacterium avium subsp. paratuberculosis K-10] Length=566 Score = 892 bits (2305), Expect = 0.0, Method: Compositional matrix adjust. Identities = 458/566 (81%), Positives = 499/566 (89%), Gaps = 3/566 (0%) Query 1 MAFPEYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTG 60 M P+ S A++ TFADLQIHP VLRAI DVGYE+PT IQAATIPALMAGSDVVGLAQTG Sbjct 1 MTLPDSSTEAASPTFADLQIHPSVLRAIADVGYETPTGIQAATIPALMAGSDVVGLAQTG 60 Query 61 TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGS 120 TGKTAAFAIP+LSKID S QALVL PTRELALQVAEAF RYGA+L ++NVLPIYGGS Sbjct 61 TGKTAAFAIPILSKIDAASTATQALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYGGS 120 Query 121 SYAVQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERI 180 SYAVQLAGL+RGA VVVGTPGR+IDHLER TLDLS VD+LVLDEADEMLTMGFA++V+RI Sbjct 121 SYAVQLAGLKRGAHVVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRI 180 Query 181 LSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKM 238 LSETPEYKQVALFSATMPPAIRKL+AKYLHDP EV+ KAKT AENISQ YIQVA RKM Sbjct 181 LSETPEYKQVALFSATMPPAIRKLTAKYLHDPLEVSTKAKTTTAENISQRYIQVAGPRKM 240 Query 239 DALTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRD 298 DALTRVLEVEPFEAMIVFVRTKQATEE+AE+LRARGFSAAAI+GD+PQ QRERT+ AL+D Sbjct 241 DALTRVLEVEPFEAMIVFVRTKQATEEVAERLRARGFSAAAINGDIPQGQRERTVAALKD 300 Query 299 GDIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRE 358 G IDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSG AL+FVSPRE Sbjct 301 GGIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRE 360 Query 359 LHLLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYERE 418 HLLKAIEKATRQ LTEA+LPTVEDVN QRVAKFADSIT ALG PGI+LFR+LV++YERE Sbjct 361 RHLLKAIEKATRQPLTEAELPTVEDVNAQRVAKFADSITAALGAPGIDLFRKLVQDYERE 420 Query 419 HDVPMADIAAALAVQCRGGEAFLMA-PDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVG 477 HDVPMADIAAALAVQ R GE FLMA P R +RR+R ++P+ L TYR+AVG Sbjct 421 HDVPMADIAAALAVQSRDGEEFLMAPEPPRERRERHTERRERTEKPRSTRPLATYRIAVG 480 Query 478 KRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVL 537 KRHKIGPGAIVGAIANEGGLHRSDFG I IGP FSLVELPAKLP++TLK+L QTRISGVL Sbjct 481 KRHKIGPGAIVGAIANEGGLHRSDFGHIAIGPGFSLVELPAKLPKSTLKRLEQTRISGVL 540 Query 538 IDLRPYRPPDAARRHNGGKPRRKHVG 563 I+L+P R AR +GGKPRRK+ G Sbjct 541 INLQPDRAAAKARGRDGGKPRRKYGG 566 >gi|254819463|ref|ZP_05224464.1| ATP-dependent rna helicase, dead/deah box family protein [Mycobacterium intracellulare ATCC 13950] Length=567 Score = 891 bits (2303), Expect = 0.0, Method: Compositional matrix adjust. Identities = 459/565 (82%), Positives = 499/565 (89%), Gaps = 4/565 (0%) Query 1 MAFPEYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTG 60 M + S A++ TFADLQIHP VLRA+ DVGYESPT IQAATIPALMAGSDVVGLAQTG Sbjct 1 MTLSDSSTGAASTTFADLQIHPSVLRAVADVGYESPTGIQAATIPALMAGSDVVGLAQTG 60 Query 61 TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGS 120 TGKTAAFAIP+LSKID+TS QALVL PTRELALQVAEAF RYGA+L ++NVLPIYGGS Sbjct 61 TGKTAAFAIPILSKIDVTSTATQALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYGGS 120 Query 121 SYAVQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERI 180 SY+VQLAGLRRGA VVVGTPGR+IDHLER TLDLS VD+LVLDEADEMLTMGFA++V+RI Sbjct 121 SYSVQLAGLRRGAHVVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRI 180 Query 181 LSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKM 238 LSETPEYKQVALFSATMPPAIRKL+ KYLHDP EV+ KAKTA AENISQ YIQVA RKM Sbjct 181 LSETPEYKQVALFSATMPPAIRKLTTKYLHDPLEVSTKAKTATAENISQRYIQVAGPRKM 240 Query 239 DALTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRD 298 DALTRVLEVEPFEAMIVFVRTKQATEE+AEKLRARGFSAAAI+GD+PQ QRERT+ AL+D Sbjct 241 DALTRVLEVEPFEAMIVFVRTKQATEEVAEKLRARGFSAAAINGDIPQGQRERTVAALKD 300 Query 299 GDIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRE 358 G IDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSG AL+FVSPRE Sbjct 301 GSIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRE 360 Query 359 LHLLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYERE 418 HLLKAIEKATRQTLTE LPTVEDVN QRVAKFADSIT ALG PGI+LFR+LV++YERE Sbjct 361 RHLLKAIEKATRQTLTETALPTVEDVNAQRVAKFADSITTALGAPGIDLFRKLVQDYERE 420 Query 419 HDVPMADIAAALAVQCRGGEAFLMA-PDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVG 477 HD PMADIAAALA+Q R GE FLMA PP R R +RRDRP++P+ TYR+AVG Sbjct 421 HDTPMADIAAALALQSRDGEEFLMAPEPPPERRERRTERRDRPEKPRSTRPFATYRIAVG 480 Query 478 KRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVL 537 KRHKIGPGAIVGAIANEGGLHRSDFG I IGPDFSLVELPAKLP++T K+L +TRISGVL Sbjct 481 KRHKIGPGAIVGAIANEGGLHRSDFGHIAIGPDFSLVELPAKLPKSTFKRLERTRISGVL 540 Query 538 IDLRPYRPPDAAR-RHNGGKPRRKH 561 I+L+P R AR +GGKPRRKH Sbjct 541 INLQPDRSSAKARGGRDGGKPRRKH 565 >gi|296170155|ref|ZP_06851752.1| ATP-dependent RNA helicase DeaD [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895181|gb|EFG74896.1| ATP-dependent RNA helicase DeaD [Mycobacterium parascrofulaceum ATCC BAA-614] Length=566 Score = 891 bits (2302), Expect = 0.0, Method: Compositional matrix adjust. Identities = 459/566 (82%), Positives = 499/566 (89%), Gaps = 3/566 (0%) Query 1 MAFPEYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTG 60 M P+ SP A++ TFADLQIHP VLRAI DVGYESPT IQAATIPALMAGSDVVGLAQTG Sbjct 1 MTLPDSSPEAASTTFADLQIHPSVLRAIADVGYESPTGIQAATIPALMAGSDVVGLAQTG 60 Query 61 TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGS 120 TGKTAAFAIP+LSKID+ SK QALVL PTRELALQVAEAF RYGA+L ++NVLPIYGGS Sbjct 61 TGKTAAFAIPILSKIDVASKATQALVLAPTRELALQVAEAFSRYGAHLPKVNVLPIYGGS 120 Query 121 SYAVQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERI 180 SY VQLAGLRRGAQVVVGTPGR+IDHLER TLDLS VD+LVLDEADEMLTMGFA++V+RI Sbjct 121 SYTVQLAGLRRGAQVVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRI 180 Query 181 LSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKM 238 LSETPEYKQVALFSATMPPAIRKL+ KYLHDP EV+ KAKTA AENISQ YIQVA RKM Sbjct 181 LSETPEYKQVALFSATMPPAIRKLTTKYLHDPLEVSTKAKTATAENISQRYIQVAGPRKM 240 Query 239 DALTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRD 298 DALTRVLEVEPFEAMIVFVRTKQATEE+AE+LRARGFSAAAI+GD+PQ QRERT+ AL+D Sbjct 241 DALTRVLEVEPFEAMIVFVRTKQATEEVAERLRARGFSAAAINGDIPQGQRERTVAALKD 300 Query 299 GDIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRE 358 G IDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSG AL+FVSPRE Sbjct 301 GGIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRE 360 Query 359 LHLLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYERE 418 HLL+AIEKATRQTL EA+LPTVEDVN QRVAKFADSIT ALG PGIELFR+LVE+YERE Sbjct 361 RHLLRAIEKATRQTLIEAELPTVEDVNAQRVAKFADSITAALGRPGIELFRKLVEDYERE 420 Query 419 HDVPMADIAAALAVQCRGGEAFLMA-PDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVG 477 HDVP+ADIAAALA+Q R GE FLMA P R D R+R ++P++ TTYR+AVG Sbjct 421 HDVPLADIAAALALQSRDGEEFLMAPEPPRERRERHDDHRERAEKPRQSRPFTTYRIAVG 480 Query 478 KRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVL 537 KRHK+GPGAIVGAIANEGGLHRSDFG I IGPDFSLVELPAKL +TLKKL +TRISGVL Sbjct 481 KRHKVGPGAIVGAIANEGGLHRSDFGHIAIGPDFSLVELPAKLSPSTLKKLERTRISGVL 540 Query 538 IDLRPYRPPDAARRHNGGKPRRKHVG 563 I+L+P R R + GKPRRKH G Sbjct 541 INLQPDRSASKPRGRDSGKPRRKHTG 566 >gi|342862130|ref|ZP_08718773.1| ATP-dependent rna helicase, dead/deah box family protein [Mycobacterium colombiense CECT 3035] gi|342130434|gb|EGT83749.1| ATP-dependent rna helicase, dead/deah box family protein [Mycobacterium colombiense CECT 3035] Length=567 Score = 889 bits (2296), Expect = 0.0, Method: Compositional matrix adjust. Identities = 458/567 (81%), Positives = 496/567 (88%), Gaps = 4/567 (0%) Query 1 MAFPEYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTG 60 M + S A++ TFADLQI+P VLRAI DVGYESPT IQAATIPALMAGSDVVGLAQTG Sbjct 1 MTLSDSSTEAASTTFADLQINPSVLRAIADVGYESPTGIQAATIPALMAGSDVVGLAQTG 60 Query 61 TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGS 120 TGKTAAFAIP+LSKID+TS QALVL PTRELALQVAEAF RYGA+L ++NVLPIYGGS Sbjct 61 TGKTAAFAIPILSKIDVTSTATQALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYGGS 120 Query 121 SYAVQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERI 180 SY+VQLAGLRRGA VVVGTPGR+IDHLER TLDLS VD+LVLDEADEMLTMGFA++V+RI Sbjct 121 SYSVQLAGLRRGAHVVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRI 180 Query 181 LSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKM 238 LSETPEYKQVALFSATMPPAIRK++ KYLHDP EV+ KAKTA AENISQ YIQVA RKM Sbjct 181 LSETPEYKQVALFSATMPPAIRKITTKYLHDPLEVSTKAKTATAENISQRYIQVAGPRKM 240 Query 239 DALTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRD 298 DALTRVLEVEPFEAMIVFVRTKQATEE+AE+LRARGFSAAAI+GD+PQ QRERT+ AL+D Sbjct 241 DALTRVLEVEPFEAMIVFVRTKQATEEVAERLRARGFSAAAINGDIPQGQRERTVAALKD 300 Query 299 GDIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRE 358 G IDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSG AL+FVSPRE Sbjct 301 GSIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRE 360 Query 359 LHLLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYERE 418 HLLKAIEKATRQTLTEA+LPTVEDVN QRVAKFADSIT ALG PGIELFR+LV++YERE Sbjct 361 RHLLKAIEKATRQTLTEAELPTVEDVNAQRVAKFADSITTALGSPGIELFRKLVQDYERE 420 Query 419 HDVPMADIAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKRRPD-LTTYRVAVG 477 HD PMADIAAALA+Q R GE FLMAP+PP RR R R R L TYR+AVG Sbjct 421 HDTPMADIAAALALQSRDGEEFLMAPEPPPERRERRTERRERPERPRSAKPLATYRIAVG 480 Query 478 KRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVL 537 KRHKIGPGAIVGAIANEGGLHRSDFG I IGPDFSLVELPAKLP++T K+L TRISGVL Sbjct 481 KRHKIGPGAIVGAIANEGGLHRSDFGHIAIGPDFSLVELPAKLPKSTFKRLENTRISGVL 540 Query 538 IDLRPYRPPDAA-RRHNGGKPRRKHVG 563 I+L+P R R +GGKPRRKH G Sbjct 541 INLQPERSSAGKPRGRDGGKPRRKHGG 567 >gi|254774280|ref|ZP_05215796.1| ATP-dependent rna helicase, dead/deah box family protein [Mycobacterium avium subsp. avium ATCC 25291] Length=542 Score = 864 bits (2232), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/542 (82%), Positives = 483/542 (90%), Gaps = 3/542 (0%) Query 25 LRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSKIDITSKVPQA 84 +RAI DVGYE+PT IQAATIPALMAGSDVVGLAQTGTGKTAAFAIP+LS ID+ S QA Sbjct 1 MRAIADVGYETPTGIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPILSNIDVASTATQA 60 Query 85 LVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGAQVVVGTPGRMI 144 LVL PTRELALQVAEAF RYGA+L ++NVLPIYGGSSYAVQLAGL+RGA VVVGTPGR+I Sbjct 61 LVLAPTRELALQVAEAFSRYGAHLPKINVLPIYGGSSYAVQLAGLKRGAHVVVGTPGRVI 120 Query 145 DHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALFSATMPPAIRKL 204 DHLER TL+LS VD+LVLDEADEMLTMGFA++V+RILSETPEYKQVALFSATMPPAIRKL Sbjct 121 DHLERGTLNLSHVDYLVLDEADEMLTMGFAEEVDRILSETPEYKQVALFSATMPPAIRKL 180 Query 205 SAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLEVEPFEAMIVFVRTKQA 262 +AKYLHDP EV+ KAKT AENISQ YIQVA RKMDALTRVLEVEPFEAMIVFVRTKQA Sbjct 181 TAKYLHDPLEVSTKAKTTTAENISQRYIQVAGPRKMDALTRVLEVEPFEAMIVFVRTKQA 240 Query 263 TEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAARGLDVERISHV 322 TEE+AE+LRARGFSAAAI+GD+PQ QRERT+ AL+DG IDILVATDVAARGLDVERISHV Sbjct 241 TEEVAERLRARGFSAAAINGDIPQGQRERTVAALKDGGIDILVATDVAARGLDVERISHV 300 Query 323 LNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKATRQTLTEAQLPTVE 382 LNYDIPHDTESYVHRIGRTGRAGRSG AL+FVSPRE HLLKAIEKATRQ LTEA+LPTVE Sbjct 301 LNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRERHLLKAIEKATRQPLTEAELPTVE 360 Query 383 DVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMADIAAALAVQCRGGEAFLM 442 DVN QRVAKFADSIT ALG PGI+LFR+LV++YEREHDVPMADIAAALAVQ R GE FLM Sbjct 361 DVNAQRVAKFADSITAALGAPGIDLFRKLVQDYEREHDVPMADIAAALAVQSRDGEEFLM 420 Query 443 A-PDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRHKIGPGAIVGAIANEGGLHRSD 501 A P R +RR+R ++P+ L TYR+AVGKRHKIGPGAIVGAIANEGGLHRSD Sbjct 421 APEPPRERRERHTERRERTEKPRSTRPLATYRIAVGKRHKIGPGAIVGAIANEGGLHRSD 480 Query 502 FGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDLRPYRPPDAARRHNGGKPRRKH 561 FG I IGPDFSLVELPAKLP++TLK+L QTRISGVLI+L+P R AR +GGKPRRK+ Sbjct 481 FGHIAIGPDFSLVELPAKLPKSTLKRLEQTRISGVLINLQPDRAAAKARGRDGGKPRRKY 540 Query 562 VG 563 G Sbjct 541 GG 542 >gi|333989860|ref|YP_004522474.1| cold-shock DEAD-box protein DeaD [Mycobacterium sp. JDM601] gi|333485828|gb|AEF35220.1| cold-shock DEAD-box protein DeaD [Mycobacterium sp. JDM601] Length=547 Score = 820 bits (2117), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/550 (76%), Positives = 467/550 (85%), Gaps = 13/550 (2%) Query 24 VLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSKIDITSKVPQ 83 +L+A+ DVGYE+P+AIQAATIPAL+AGSDVVGLAQTGTGKTAAFAIP+LS+ID SK Q Sbjct 1 MLQAVVDVGYETPSAIQAATIPALLAGSDVVGLAQTGTGKTAAFAIPILSRIDTASKATQ 60 Query 84 ALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGAQVVVGTPGRM 143 ALVL PTRELALQVAEAFGRYG++L ++NVLPIYGG+SY VQL+GL+RGAQVVVGTPGR+ Sbjct 61 ALVLAPTRELALQVAEAFGRYGSHLPRVNVLPIYGGASYTVQLSGLKRGAQVVVGTPGRV 120 Query 144 IDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALFSATMPPAIRK 203 IDHLER +LDLS +D+LVLDEADEML MGFA+DVERIL++TPEYKQVALFSATMPPAIR+ Sbjct 121 IDHLERGSLDLSHLDYLVLDEADEMLQMGFAEDVERILADTPEYKQVALFSATMPPAIRR 180 Query 204 LSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLEVEPFEAMIVFVRTKQ 261 ++ +YLHDP EVT +AKT AENISQ YI+VA RKMDALTRVLEVE FEAMIVFVRTKQ Sbjct 181 ITTRYLHDPVEVTVEAKTTTAENISQRYIEVAGPRKMDALTRVLEVETFEAMIVFVRTKQ 240 Query 262 ATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAARGLDVERISH 321 ATEE+AEKLRARGF+AAAI+GD+ QAQRERTI +L+ G+IDILVATDVAARGLDVERISH Sbjct 241 ATEEVAEKLRARGFAAAAINGDIAQAQRERTIASLKSGNIDILVATDVAARGLDVERISH 300 Query 322 VLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKATRQTLTEAQLPTV 381 V+NYDIPHDTE+YVHRIGRTGRAGRSG AL+FVSPRE HLLKAIE+ATRQ LTE+ LPTV Sbjct 301 VVNYDIPHDTEAYVHRIGRTGRAGRSGTALLFVSPRERHLLKAIERATRQKLTESTLPTV 360 Query 382 EDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMADIAAALAVQCRGGEAFL 441 EDVN QRVAKFADSIT LG G +LFR LVEEY REH+VPMADIAAALA+Q R GEAFL Sbjct 361 EDVNAQRVAKFADSITTTLGADGTDLFRSLVEEYSREHNVPMADIAAALALQSRDGEAFL 420 Query 442 MAPDPPLSRRNRDQRRDRPQRPKRRPD--------LTTYRVAVGKRHKIGPGAIVGAIAN 493 MAP+PP R + RD+ +RP R+ D TYR+AVGKRHK+ PGAIVGA+AN Sbjct 421 MAPEPPARER---RSRDKSERPDRKSDRKGPPKEGFATYRIAVGKRHKVNPGAIVGALAN 477 Query 494 EGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDLRPYRPPDAARRHN 553 EGGL+RSDFG I I D SLVELPAKL TLK L QTRI G LI+LR RP RH Sbjct 478 EGGLNRSDFGHISIRVDHSLVELPAKLSGKTLKALEQTRIQGQLINLRRDRPSGKPARHG 537 Query 554 GGKPRRKHVG 563 G RK +G Sbjct 538 DGGTHRKRMG 547 >gi|169628494|ref|YP_001702143.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus ATCC 19977] gi|169240461|emb|CAM61489.1| Probable cold-shock DEAD box protein A homolog (ATP-dependent RNA helicase DEAD homolog) [Mycobacterium abscessus] Length=598 Score = 817 bits (2110), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/560 (76%), Positives = 469/560 (84%), Gaps = 9/560 (1%) Query 8 PAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAF 67 PA TFADL I P VLRA+ DVGYE+P+AIQAATIP L+AGSDVVGLAQTGTGKTAAF Sbjct 18 PADDTVTFADLHIAPEVLRAVSDVGYETPSAIQAATIPPLLAGSDVVGLAQTGTGKTAAF 77 Query 68 AIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLA 127 AIP+LSKID+TSK QALVL PTRELALQVAEAFGRYGA++ +LNVLPIYGG SY VQLA Sbjct 78 AIPILSKIDLTSKDTQALVLAPTRELALQVAEAFGRYGAHMPKLNVLPIYGGQSYVVQLA 137 Query 128 GLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEY 187 GL+RGAQVVVGTPGR+IDHLER TLDLS +D+LVLDEADEMLTMGFA+DVERIL++TPEY Sbjct 138 GLKRGAQVVVGTPGRVIDHLERGTLDLSHLDYLVLDEADEMLTMGFAEDVERILADTPEY 197 Query 188 KQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVL 245 KQVALFSATMP IR+L+ KYLHDP E+ AKT+ AENI+Q +IQVA RKMDALTR+L Sbjct 198 KQVALFSATMPTTIRRLTKKYLHDPVEIKIDAKTSTAENITQRFIQVAGPRKMDALTRIL 257 Query 246 EVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILV 305 EVE FEAMIVFVRTKQATEE+A+KL+ARGF+AAAI+GD+ Q+QRERTI AL+ G IDILV Sbjct 258 EVETFEAMIVFVRTKQATEEVADKLKARGFAAAAINGDINQSQRERTINALKAGTIDILV 317 Query 306 ATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAI 365 ATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSG A++FVSPRE HLLKAI Sbjct 318 ATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTAVLFVSPRERHLLKAI 377 Query 366 EKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMAD 425 EK T L E LP+VEDVN QRV KF D+IT AL P +ELFRRLVE+YER+++VP+AD Sbjct 378 EKTTGAKLAEEPLPSVEDVNAQRVTKFRDAITAALAAPEVELFRRLVEDYERDNNVPVAD 437 Query 426 IAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQR-PK----RRPDLTTYRVAVGKRH 480 IAAALAV R GE FL+ PDPP R R +R +RP R P+ R P L TYR+AVGKRH Sbjct 438 IAAALAVLSRDGEQFLLQPDPP--REPRHERGERPDRGPRGERPRTPGLATYRIAVGKRH 495 Query 481 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL 540 K+ PGAIVGAIANEGGLHRSDFG I I PD SLVELPAKL TLK L TRISGVLIDL Sbjct 496 KVMPGAIVGAIANEGGLHRSDFGHITIRPDHSLVELPAKLSPKTLKALENTRISGVLIDL 555 Query 541 RPYRPPDAARRHNGGKPRRK 560 RP PD AR RR+ Sbjct 556 RPAGGPDGARPDRKYTERRR 575 >gi|108800931|ref|YP_641128.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS] gi|119870071|ref|YP_940023.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp. KMS] gi|126436556|ref|YP_001072247.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp. JLS] gi|108771350|gb|ABG10072.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. MCS] gi|119696160|gb|ABL93233.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. KMS] gi|126236356|gb|ABN99756.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. JLS] Length=557 Score = 811 bits (2095), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/559 (74%), Positives = 469/559 (84%), Gaps = 8/559 (1%) Query 1 MAFPEYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTG 60 M PE + TFADLQIHP VLRA+ DVGYE+P+AIQAATIPA++AGSDVVGLAQTG Sbjct 1 MTSPEPDAPGTETTFADLQIHPEVLRAVTDVGYETPSAIQAATIPAMLAGSDVVGLAQTG 60 Query 61 TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGS 120 TGKTAAFAIP+LSKID S+ QALVL PTRELALQVAEAFGRYGA+L +NVLP+YGGS Sbjct 61 TGKTAAFAIPILSKIDPNSRATQALVLAPTRELALQVAEAFGRYGAHLP-VNVLPVYGGS 119 Query 121 SYAVQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERI 180 SY Q+AGL+RGAQVVVGTPGR+IDHLE+ +LDLS +D++VLDEADEML MGFA+DVERI Sbjct 120 SYGPQMAGLKRGAQVVVGTPGRVIDHLEKGSLDLSHLDYMVLDEADEMLQMGFAEDVERI 179 Query 181 LSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKM 238 LS+TPEYKQVALFSATMPP I+K++ KYLHDP EVT K+KT AENI+Q YIQV+ RKM Sbjct 180 LSDTPEYKQVALFSATMPPGIKKITKKYLHDPVEVTVKSKTQTAENITQRYIQVSYPRKM 239 Query 239 DALTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRD 298 DALTR+LE E + MIVFVRTKQATEE+AEKLRARGF+AAAI+GD+PQA RERTI+ L+D Sbjct 240 DALTRLLETEQGDGMIVFVRTKQATEEVAEKLRARGFAAAAINGDIPQAVRERTISQLKD 299 Query 299 GDIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRE 358 G IDILVATDVAARGLDVERISHV+N+DIPHD ESYVHRIGRTGRAGRSG AL+FV+PRE Sbjct 300 GSIDILVATDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRE 359 Query 359 LHLLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYERE 418 HLL +IE+ TRQ L E QLP+VEDVN QRV KF DSI AL PGI+LFRRL+E+YER+ Sbjct 360 RHLLNSIERVTRQKLVEIQLPSVEDVNAQRVEKFRDSIGEALNAPGIDLFRRLIEDYERD 419 Query 419 HDVPMADIAAALAVQCRGGEAFLMAPDPPLSRRN---RDQRRDRPQRPKRRPDLTTYRVA 475 ++VP+ADIAAALAVQ R GE FLM PP RR RD+ R R + R DL TYR+A Sbjct 420 NNVPLADIAAALAVQSRNGEEFLMTEPPPEKRRERPVRDESGPRKARDRTRSDLATYRIA 479 Query 476 VGKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISG 535 VGKRHK+ PGAIVGAIANEGGL+RSDFG I I P++SLVELPA LP+ TLKKL +TRI G Sbjct 480 VGKRHKVMPGAIVGAIANEGGLNRSDFGHIAIKPEYSLVELPADLPKDTLKKLERTRIQG 539 Query 536 VLIDLRPYRPPDAARRHNG 554 VLI+L P R P A R+ G Sbjct 540 VLINLEPDRGPKA--RYKG 556 >gi|118470234|ref|YP_889292.1| ATP-dependent rna helicase, dead/deah box family protein [Mycobacterium smegmatis str. MC2 155] gi|118171521|gb|ABK72417.1| ATP-dependent rna helicase, dead/deah box family protein [Mycobacterium smegmatis str. MC2 155] Length=581 Score = 810 bits (2092), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/562 (75%), Positives = 478/562 (86%), Gaps = 13/562 (2%) Query 9 AASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFA 68 A + TFADLQIHP VL+A+ DVGYESP+AIQAATIP ++AGSDVVGLAQTGTGKTAAFA Sbjct 17 APTEPTFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSDVVGLAQTGTGKTAAFA 76 Query 69 IPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAG 128 IP+LSKID + + QALVL PTRELALQVAEAFGRYG++L Q+NVLPIYGGSSY VQL+G Sbjct 77 IPILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVNVLPIYGGSSYTVQLSG 136 Query 129 LRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYK 188 LRRGAQVVVGTPGR+IDHLER TLDLS++D+LVLDEADEMLTMGFA++VERIL++TPEYK Sbjct 137 LRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMGFAEEVERILADTPEYK 196 Query 189 QVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLE 246 QVALFSATMP AIRK++ KYLHDP EVT KAKTA AENISQ +IQVA RKMDALTR+LE Sbjct 197 QVALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFIQVAGPRKMDALTRILE 256 Query 247 VEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVA 306 VE +AMIVFVRTKQATEE+A++L+ARGF+AAAI+GD+ QAQRERTI+AL+DG IDIL+A Sbjct 257 VEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTISALKDGTIDILIA 316 Query 307 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIE 366 TDVAARGLDVERISHV+NYDIPHDTESYVHRIGRTGRAGRSG A++FV+PRE HLLK+IE Sbjct 317 TDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVLFVTPRERHLLKSIE 376 Query 367 KATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMADI 426 KATR L EA+LP+VEDVN QRVAKF DSI+++L PGI+LFRRL+E+YERE +VP+ADI Sbjct 377 KATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRRLIEDYERESNVPLADI 436 Query 427 AAALAVQCRGGEAFLMAP-------DPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKR 479 AAALAVQ R GE FLM D R +R R R +RP R L TYR+ VGKR Sbjct 437 AAALAVQTRNGEEFLMTEPPPDKRRDRDRDRDDRGDRGPRKERPPRE-GLATYRIDVGKR 495 Query 480 HKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLID 539 HK+GPG IVGAIANEGGLHR++FG I I D+SLVELP KLP+ TLK L TRISGVLI+ Sbjct 496 HKVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLVELPEKLPKKTLKALENTRISGVLIN 555 Query 540 LRPYRPPDAARRHNGGKPRRKH 561 L+P R P RR GKP K+ Sbjct 556 LQPDRGP---RREGAGKPSGKY 574 >gi|315443280|ref|YP_004076159.1| DNA/RNA helicase, superfamily II [Mycobacterium sp. Spyr1] gi|315261583|gb|ADT98324.1| DNA/RNA helicase, superfamily II [Mycobacterium sp. Spyr1] Length=561 Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/566 (74%), Positives = 469/566 (83%), Gaps = 11/566 (1%) Query 1 MAFPEYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTG 60 M P + TFADLQIHP VL+A+ DVGYESP+ IQAATIPA++ GSDVVGLAQTG Sbjct 1 MTSSNAEPDPADLTFADLQIHPAVLKAVADVGYESPSPIQAATIPAMLEGSDVVGLAQTG 60 Query 61 TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGS 120 TGKTAAFAIP+LSKID S+ QALVL PTRELALQVAEAFGRYGA L ++NVLPIYGGS Sbjct 61 TGKTAAFAIPILSKIDTESRNTQALVLAPTRELALQVAEAFGRYGAQL-RVNVLPIYGGS 119 Query 121 SYAVQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERI 180 SY QLAGL+RGAQVVVGTPGR+IDHLE+ +LDLS +D+LVLDEADEML MGFA+DVERI Sbjct 120 SYVPQLAGLKRGAQVVVGTPGRVIDHLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERI 179 Query 181 LSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKM 238 L++TPEYKQVALFSATMPPAI+K++AKYLHDP EVT K+KT AENI+Q Y V+ RKM Sbjct 180 LADTPEYKQVALFSATMPPAIKKITAKYLHDPVEVTVKSKTQTAENITQRYFLVSYPRKM 239 Query 239 DALTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRD 298 DALTR+LE E +AMIVFVRTKQATEE+AEKLRARGF+A+AI+GD+PQA RERTIT L+D Sbjct 240 DALTRLLETEQGDAMIVFVRTKQATEEVAEKLRARGFAASAINGDIPQAVRERTITQLKD 299 Query 299 GDIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRE 358 G IDILVATDVAARGLDVERISHV+N+DIPHD ESYVHRIGRTGRAGRSG AL+FV+PRE Sbjct 300 GTIDILVATDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRE 359 Query 359 LHLLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYERE 418 HLL AIE+ TRQ L E++LP+V+DVN +RVAKF DSIT+AL PGI+LFR LVE YER+ Sbjct 360 RHLLGAIERVTRQKLVESELPSVDDVNEKRVAKFRDSITDALDKPGIDLFRALVEGYERD 419 Query 419 HDVPMADIAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDR---PQRPK-RRPDLTTYRV 474 HDVPMADIAAALA+Q R GE FLM PP RR R R DR P++P+ RR DL TYR+ Sbjct 420 HDVPMADIAAALALQSRNGEEFLMTEPPPEKRRERPDRGDRSDAPRKPRERRSDLATYRI 479 Query 475 AVGKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRIS 534 AVGKRHK+ PGAIVGAIANEGGLHRSDFG I I D SLVELPAKLP TLK L T+I Sbjct 480 AVGKRHKVAPGAIVGAIANEGGLHRSDFGHITIKMDHSLVELPAKLPGNTLKALQNTKIQ 539 Query 535 GVLIDLRPYRPPDAARRHNGGKPRRK 560 G LI L+P R P R GKP K Sbjct 540 GQLIQLQPDRGPKPHR----GKPPTK 561 >gi|145222813|ref|YP_001133491.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium gilvum PYR-GCK] gi|145215299|gb|ABP44703.1| ATP-dependent RNA helicase CsdA [Mycobacterium gilvum PYR-GCK] Length=559 Score = 803 bits (2074), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/561 (74%), Positives = 467/561 (84%), Gaps = 8/561 (1%) Query 1 MAFPEYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTG 60 M P + TFADLQIHP VL+A+ DVGYESP+ IQAATIPA++ GSDVVGLAQTG Sbjct 1 MTSSNAEPDPADLTFADLQIHPAVLKAVADVGYESPSPIQAATIPAILEGSDVVGLAQTG 60 Query 61 TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGS 120 TGKTAAFAIP+LSKID S+ QALVL PTRELALQVAEAFGRYGA L ++NVLPIYGGS Sbjct 61 TGKTAAFAIPILSKIDTDSRNTQALVLAPTRELALQVAEAFGRYGAQL-RVNVLPIYGGS 119 Query 121 SYAVQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERI 180 SY QLAGL+RGAQVVVGTPGR+IDHLE+ +LDLS +D+LVLDEADEML MGFA+DVERI Sbjct 120 SYVPQLAGLKRGAQVVVGTPGRVIDHLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERI 179 Query 181 LSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKM 238 L++TPEYKQVALFSATMPPAI+K++AKYLHDP EVT K+KT AENI+Q Y V+ RKM Sbjct 180 LADTPEYKQVALFSATMPPAIKKITAKYLHDPVEVTVKSKTQTAENITQRYFLVSYPRKM 239 Query 239 DALTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRD 298 DALTR+LE E +AMIVFVRTKQATEE+AEKLRARGF+A+AI+GD+PQA RERTI L+D Sbjct 240 DALTRLLETEQGDAMIVFVRTKQATEEVAEKLRARGFAASAINGDIPQAVRERTIAQLKD 299 Query 299 GDIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRE 358 G IDILVATDVAARGLDVERISHV+N+DIPHD ESYVHRIGRTGRAGRSG AL+FV+PRE Sbjct 300 GTIDILVATDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRE 359 Query 359 LHLLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYERE 418 HLL AIE+ TRQ L E++LP+V+DVN +RVAKF DSIT+AL PGI+LFR LVE YER+ Sbjct 360 RHLLGAIERVTRQKLVESELPSVDDVNEKRVAKFRDSITDALDKPGIDLFRTLVEGYERD 419 Query 419 HDVPMADIAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRD-RPQRPK-RRPDLTTYRVAV 476 HDVPMADIAAALA+Q R GE FLM PP RR R +R D P++P+ RR DL TYR+AV Sbjct 420 HDVPMADIAAALALQSRNGEEFLMTEPPPEKRRERPERGDASPRKPRERRSDLATYRIAV 479 Query 477 GKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGV 536 GKRHK+ PGAIVGAIANEGGLHRSDFG I I D SLVELPAKLP TLK L T+I G Sbjct 480 GKRHKVAPGAIVGAIANEGGLHRSDFGHITIKMDHSLVELPAKLPGKTLKALQNTKIQGQ 539 Query 537 LIDLRPYRPPDAARRHNGGKP 557 LI L+P R A+ H G P Sbjct 540 LIQLQPDR---GAKPHRGKPP 557 >gi|120405422|ref|YP_955251.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119958240|gb|ABM15245.1| ATP-dependent RNA helicase CsdA [Mycobacterium vanbaalenii PYR-1] Length=564 Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/556 (73%), Positives = 463/556 (84%), Gaps = 14/556 (2%) Query 14 TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLS 73 TFADLQIHP VL+A+ DVGYE+P+ IQAATIPA++ GSDVVGLAQTGTGKTAAFAIP+LS Sbjct 14 TFADLQIHPAVLQAVADVGYETPSPIQAATIPAILDGSDVVGLAQTGTGKTAAFAIPILS 73 Query 74 KIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGA 133 KID S+ QALVL PTRELALQVAEAFGRYGA+L ++NVLPIYGG+SY QL+GL+RGA Sbjct 74 KIDTDSRNTQALVLAPTRELALQVAEAFGRYGAHL-RVNVLPIYGGASYVPQLSGLKRGA 132 Query 134 QVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALF 193 QVVVGTPGR+IDHLE+ +LDLS +D+LVLDEADEML MGFA+DVERIL++TPEYKQVALF Sbjct 133 QVVVGTPGRVIDHLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERILADTPEYKQVALF 192 Query 194 SATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLEVEPFE 251 SATMPPAI+K++AKYLHDP EVT K+KT AENI+Q Y V+ RKMDALTR+LEVE + Sbjct 193 SATMPPAIKKITAKYLHDPVEVTVKSKTQTAENITQRYFLVSYPRKMDALTRLLEVEQGD 252 Query 252 AMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAA 311 AMIVFVRTKQATEE+AEKLR+RGF+AAAI+GD+PQA RERTI+ L+DG IDILVATDVAA Sbjct 253 AMIVFVRTKQATEEVAEKLRSRGFAAAAINGDIPQAVRERTISQLKDGTIDILVATDVAA 312 Query 312 RGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKATRQ 371 RGLDVERISHV+N+DIPHD ESYVHRIGRTGRAGRSG AL+FV+PRE HLL AIE+ TRQ Sbjct 313 RGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLLGAIERVTRQ 372 Query 372 TLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMADIAAALA 431 L E++LP+VEDVN +RVAKF DSIT+AL PGI+LFR L+E YER+HDVPMADIAAALA Sbjct 373 KLVESELPSVEDVNEKRVAKFRDSITDALEKPGIDLFRTLIEGYERDHDVPMADIAAALA 432 Query 432 VQCRGGEAFLMA------PDPPLSRRNRDQRRDRPQRPK-RRPDLTTYRVAVGKRHKIGP 484 +Q R GE FLM R RD P++P+ RR DL TYR+AVGKRHK+ P Sbjct 433 LQSRNGEEFLMTEPPPEKRRERRERDGRDGDDRGPRKPRERRSDLATYRIAVGKRHKVAP 492 Query 485 GAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDLRPYR 544 GAIVGAIANEGGLHRSDFG I I D+SLVELPAKL TLK L TRI G LI L P R Sbjct 493 GAIVGAIANEGGLHRSDFGHITIKVDYSLVELPAKLSHKTLKALENTRIQGQLIHLEPDR 552 Query 545 PPDAARRHNGGKPRRK 560 P R G+P+ K Sbjct 553 GPKPHR----GRPQSK 564 >gi|312138933|ref|YP_004006269.1| dead/deah box helicase [Rhodococcus equi 103S] gi|311888272|emb|CBH47584.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S] Length=610 Score = 768 bits (1982), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/560 (70%), Positives = 459/560 (82%), Gaps = 14/560 (2%) Query 14 TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLS 73 TFADLQI RVL+A+ DVGYESP+ IQAATIP L+ G DVVGLAQTGTGKTAAFAIP+LS Sbjct 16 TFADLQIDERVLKALSDVGYESPSPIQAATIPTLLEGKDVVGLAQTGTGKTAAFAIPILS 75 Query 74 KIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGA 133 ++D+ KVPQAL+L PTRELALQVAEAFG+Y A++ L VLPIYGG +Y VQL+GLRRGA Sbjct 76 RLDVDRKVPQALILAPTRELALQVAEAFGKYSAHIPGLQVLPIYGGQAYGVQLSGLRRGA 135 Query 134 QVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALF 193 Q++VGTPGR+IDHLE+ TLDLS +++LVLDEADEML MGF DDVERIL++TPEYKQVALF Sbjct 136 QIIVGTPGRVIDHLEKGTLDLSNLEYLVLDEADEMLKMGFQDDVERILADTPEYKQVALF 195 Query 194 SATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLEVEPFE 251 SATMPPAIRK+S +YLHDP E+T KAKTA A NI+Q ++QVA RK+DALTR+LEVE FE Sbjct 196 SATMPPAIRKISKQYLHDPVEITVKAKTATASNITQRWVQVAHQRKLDALTRILEVESFE 255 Query 252 AMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAA 311 AMI+FVRTKQATE++AE+LRARGFSAAAI+GD+ QAQRERTI L+ G +DILVATDVAA Sbjct 256 AMIIFVRTKQATEDLAERLRARGFSAAAINGDIVQAQRERTIGQLKSGALDILVATDVAA 315 Query 312 RGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKATRQ 371 RGLDV+RISHV+NYDIPHDTESYVHRIGRTGRAGR+G AL+FV+PRE HLLK+IE+ TRQ Sbjct 316 RGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRTGDALLFVAPRERHLLKSIERTTRQ 375 Query 372 TLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMADIAAALA 431 LTE QLPTVEDVN QRV+KF DSIT +L + LFR+L+E+YEREHDVP+ADIAAALA Sbjct 376 PLTEIQLPTVEDVNAQRVSKFGDSITESLNSENLALFRKLIEDYEREHDVPLADIAAALA 435 Query 432 VQCRGGEAFLMAPDPPLSRRNR------------DQRRDRPQRPKRRPDLTTYRVAVGKR 479 VQ R GE+FLMAP+PP R D P+ + + TYR+AVGKR Sbjct 436 VQSRDGESFLMAPEPPAPPRREREPRERPARRFDDGGPSGPRVGRDGQEFATYRIAVGKR 495 Query 480 HKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLID 539 HK+ PGAIVGAIANEGGL RSDFG I I PD SLVELPA LP+ T++ L TRISGVLI Sbjct 496 HKVVPGAIVGAIANEGGLRRSDFGHISIRPDHSLVELPANLPKETVEALRATRISGVLIQ 555 Query 540 LRPYRPPDAARRHNGGKPRR 559 L+ + R+ GG+ R Sbjct 556 LQLDQGAPTGRQGRGGREDR 575 >gi|226365506|ref|YP_002783289.1| ATP-dependent DEAD-box RNA helicase DeaD [Rhodococcus opacus B4] gi|226243996|dbj|BAH54344.1| ATP-dependent DEAD-box RNA helicase DeaD [Rhodococcus opacus B4] Length=587 Score = 763 bits (1970), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/559 (72%), Positives = 462/559 (83%), Gaps = 13/559 (2%) Query 14 TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLS 73 TFADL I RVL+A+ DVGYESP+ IQAATIP L+AG+DVVGLAQTGTGKTAAFA+P+LS Sbjct 12 TFADLDIDDRVLKALSDVGYESPSPIQAATIPPLLAGNDVVGLAQTGTGKTAAFAVPILS 71 Query 74 KIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGA 133 KID+T K PQALVL PTRELALQVAEAFG+Y A++ L+VLPIYGG SY VQL+GLRRGA Sbjct 72 KIDLTQKSPQALVLAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQSYGVQLSGLRRGA 131 Query 134 QVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALF 193 VVVGTPGR+IDHLE+ TLDLS++ +LVLDEADEML MGF +DVERILS+TPEYKQVALF Sbjct 132 HVVVGTPGRVIDHLEKGTLDLSKLAYLVLDEADEMLKMGFQEDVERILSDTPEYKQVALF 191 Query 194 SATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLEVEPFE 251 SATMP AIRK+S +YLHDP E+T K+KT+ A NISQ Y+QVA RK+DALTRVLEVE F Sbjct 192 SATMPGAIRKISKQYLHDPVEITVKSKTSTASNISQRYVQVAHQRKLDALTRVLEVEDFG 251 Query 252 AMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAA 311 AMI+FVRTKQATE++AE+LR+RGFSAAAI+GD+ QAQRERTI L+ G +DILVATDVAA Sbjct 252 AMIIFVRTKQATEDLAERLRSRGFSAAAINGDIVQAQRERTIGQLKSGALDILVATDVAA 311 Query 312 RGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKATRQ 371 RGLDV+RISHV+NYDIPHDTESYVHRIGRTGRAGR+G AL+FV+PRE HLLKAIEKATRQ Sbjct 312 RGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRAGEALLFVAPRERHLLKAIEKATRQ 371 Query 372 TLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMADIAAALA 431 L E QLP+V+DVN QRV+KF DSIT +L + LFR+++E+YE+EHDVP+ADIAAALA Sbjct 372 PLAEMQLPSVDDVNAQRVSKFGDSITESLTSDNLALFRKMIEDYEQEHDVPLADIAAALA 431 Query 432 VQCRGGEAFLMAPDPPLSRRNRDQRR--------DRPQRPKRRP---DLTTYRVAVGKRH 480 VQ R GEAFLMAP+PP + R + R D P R P +L TYR+AVGKRH Sbjct 432 VQSRDGEAFLMAPEPPPAPRREREPRERPARRFDDGPPTRSRGPEGQELATYRIAVGKRH 491 Query 481 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL 540 ++ PGAIVGAIANEGGL RSDFG I I PD SLVELPA L TL+ L +TRISGVLI L Sbjct 492 RVVPGAIVGAIANEGGLRRSDFGHISIRPDHSLVELPADLSSETLEALRRTRISGVLIQL 551 Query 541 RPYRPPDAARRHNGGKPRR 559 +P P + R GG+ R Sbjct 552 QPDSGPPSGRPGRGGRDDR 570 >gi|111023001|ref|YP_705973.1| cold-shock DEAD-box protein [Rhodococcus jostii RHA1] gi|110822531|gb|ABG97815.1| probable cold-shock DEAD-box protein [Rhodococcus jostii RHA1] Length=586 Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/554 (72%), Positives = 460/554 (84%), Gaps = 13/554 (2%) Query 14 TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLS 73 TFADL I RVL+A+ DVGYESP+ IQAATIP L+AG+DVVGLAQTGTGKTAAFA+P+LS Sbjct 12 TFADLDIDDRVLKALSDVGYESPSPIQAATIPPLLAGNDVVGLAQTGTGKTAAFAVPILS 71 Query 74 KIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGA 133 KID+T K PQALVL PTRELALQVAEAFG+Y A++ L+VLPIYGG SY VQL+GLRRGA Sbjct 72 KIDLTQKSPQALVLAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQSYGVQLSGLRRGA 131 Query 134 QVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALF 193 VVVGTPGR+IDHLE+ TLDLS++ +LVLDEADEML MGF +DVERIL++TPEYKQVALF Sbjct 132 HVVVGTPGRVIDHLEKGTLDLSKLSYLVLDEADEMLKMGFQEDVERILADTPEYKQVALF 191 Query 194 SATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLEVEPFE 251 SATMP AIRK+S +Y+HDP E+T K+KT+ A NISQ Y+QVA RK+DALTRVLEVE FE Sbjct 192 SATMPGAIRKISKQYMHDPVEITMKSKTSTASNISQRYVQVAHQRKLDALTRVLEVEDFE 251 Query 252 AMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAA 311 AMI+FVRTKQATE++AEKLR+RGFSA+AI+GD+ QAQRERTI L+ G +DILVATDVAA Sbjct 252 AMIIFVRTKQATEDLAEKLRSRGFSASAINGDIVQAQRERTIGQLKSGALDILVATDVAA 311 Query 312 RGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKATRQ 371 RGLDV+RISHV+NYDIPHDTESYVHRIGRTGRAGR+G AL+FV+PRE HLLKAIEKATRQ Sbjct 312 RGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRAGEALLFVAPRERHLLKAIEKATRQ 371 Query 372 TLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMADIAAALA 431 L E QLP+V+DVN QRV+KF DSIT +L + LFR+++E+YE+EHDVP+ADIAAALA Sbjct 372 PLAEMQLPSVDDVNAQRVSKFGDSITESLTSDNLALFRKMIEDYEQEHDVPLADIAAALA 431 Query 432 VQCRGGEAFLMAPDPPLSRRNRDQRR--------DRPQRPKRRP---DLTTYRVAVGKRH 480 VQ R GEAFLMAP+PP + R + R + P R P +L TYR+AVGKRH Sbjct 432 VQSRDGEAFLMAPEPPPAPRREREPRERPARRFDEGPPTRSRGPEGQELATYRIAVGKRH 491 Query 481 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL 540 ++ PGAIVGAIANEGGL RSDFG I I PD SLVELPA L TL+ L +TRISGVLI L Sbjct 492 RVVPGAIVGAIANEGGLRRSDFGHISIRPDHSLVELPADLSSETLEALRRTRISGVLIQL 551 Query 541 RPYRPPDAARRHNG 554 +P P + R G Sbjct 552 QPDSGPPSGRPRGG 565 >gi|226307581|ref|YP_002767541.1| ATP-dependent RNA helicase DeaD [Rhodococcus erythropolis PR4] gi|229493790|ref|ZP_04387568.1| cold-shock DEAD box protein A [Rhodococcus erythropolis SK121] gi|226186698|dbj|BAH34802.1| probable ATP-dependent RNA helicase DeaD [Rhodococcus erythropolis PR4] gi|229319289|gb|EEN85132.1| cold-shock DEAD box protein A [Rhodococcus erythropolis SK121] Length=591 Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/548 (69%), Positives = 447/548 (82%), Gaps = 15/548 (2%) Query 14 TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLS 73 TFADL I RVL+A+ DVGYESP+ IQAATIP L+ G DVVGLAQTGTGKTAAFA+P+LS Sbjct 12 TFADLDIDDRVLKALSDVGYESPSPIQAATIPPLLEGKDVVGLAQTGTGKTAAFAVPVLS 71 Query 74 KIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGA 133 +ID + K QALVL PTRELALQVAEAFG+Y A++ LNVLPIYGG SY VQL+GLRRGA Sbjct 72 RIDTSIKQTQALVLAPTRELALQVAEAFGKYSAHIPGLNVLPIYGGQSYGVQLSGLRRGA 131 Query 134 QVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALF 193 VVVGTPGR+IDHLE+ TLDL+ + +LVLDEADEML MGF +DVERIL +TP KQVALF Sbjct 132 HVVVGTPGRVIDHLEKGTLDLTNLKYLVLDEADEMLKMGFQEDVERILRDTPGDKQVALF 191 Query 194 SATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLEVEPFE 251 SATMP +IR++S +YL++P E+T K+KT+ A NI+Q YIQVA RK+DALTRVLEVE FE Sbjct 192 SATMPGSIRRISKQYLNNPVEITVKSKTSTASNITQRYIQVAHQRKLDALTRVLEVEAFE 251 Query 252 AMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAA 311 AMI+FVRTKQATE++AEKLRARG SAAAI+GD+ QAQRERTI L++G +DILVATDVAA Sbjct 252 AMIIFVRTKQATEDLAEKLRARGHSAAAINGDIVQAQRERTIGQLKNGALDILVATDVAA 311 Query 312 RGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKATRQ 371 RGLDV+RISHV+NYDIPHDTESYVHRIGRTGRAGR G AL+FV+PRE HLLK+IEKATRQ Sbjct 312 RGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRQGDALLFVAPRERHLLKSIEKATRQ 371 Query 372 TLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMADIAAALA 431 L E QLP+V+DVN QRVAKF DSIT +L + +FR+++E+Y++EHDVP+ DIAAALA Sbjct 372 PLAEMQLPSVDDVNAQRVAKFGDSITESLASENLAMFRKMIEDYDQEHDVPLIDIAAALA 431 Query 432 VQCRGGEAFLMAPDPPLSRRNRDQRR---------DRPQRPKRRP---DLTTYRVAVGKR 479 +Q R GEAFL++P+PP R + R D P R P +L YR+AVGKR Sbjct 432 LQSRDGEAFLLSPEPPAPPRREREPREPRPPRRFDDGPAPRSRGPEGQELAAYRIAVGKR 491 Query 480 HKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLID 539 H++ PGAIVGAIANEGGL RSDFG I I PD S+VELPA L TL+ L +TRISGVLI Sbjct 492 HRVVPGAIVGAIANEGGLRRSDFGHISIRPDHSIVELPADLSNETLEALRRTRISGVLIQ 551 Query 540 LRP-YRPP 546 L+P + PP Sbjct 552 LQPDFGPP 559 >gi|54026656|ref|YP_120898.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152] gi|54018164|dbj|BAD59534.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152] Length=602 Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/559 (68%), Positives = 444/559 (80%), Gaps = 14/559 (2%) Query 14 TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLS 73 +FADL I R+LRAI DVGYESP+ IQAATIP L+ G+DVVGLAQTGTGKTAAFAIP+L Sbjct 30 SFADLGIDDRILRAIADVGYESPSPIQAATIPPLLDGADVVGLAQTGTGKTAAFAIPILM 89 Query 74 KIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGA 133 +++T + P+ALVL PTRELA+QVAEAFGRY A++ L+VLPIYGG SY VQL+GLRRGA Sbjct 90 GLEVTGRQPRALVLAPTRELAIQVAEAFGRYAAHMPGLHVLPIYGGQSYGVQLSGLRRGA 149 Query 134 QVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALF 193 VVVGTPGR+IDHLE+ TLDLS++ +LVLDEADEML MGF +DVERIL++TP KQVALF Sbjct 150 HVVVGTPGRVIDHLEKGTLDLSQLQYLVLDEADEMLKMGFQEDVERILADTPREKQVALF 209 Query 194 SATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLEVEPFE 251 SATMP AIRK+S +YL +P E+T KAKT NI+Q ++QV+ RK+DALTRVLEVEPFE Sbjct 210 SATMPAAIRKISKQYLREPVEITVKAKTQTNTNITQRWVQVSHQRKLDALTRVLEVEPFE 269 Query 252 AMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAA 311 AMI+FVRTKQ TEE+AEKLRARGFSAAAI+GD+ Q QRERTI L+ G +DILVATDVAA Sbjct 270 AMIIFVRTKQGTEELAEKLRARGFSAAAINGDIAQNQRERTIGQLKSGALDILVATDVAA 329 Query 312 RGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKATRQ 371 RGLDV+RISHV+NYDIPHDTESYVHRIGRTGRAGRSG AL+FV+PRE HLLKAIE+ATR Sbjct 330 RGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGQALLFVAPRERHLLKAIERATRH 389 Query 372 TLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMADIAAALA 431 L E QLP+VEDVN QRV+KF D+IT L + LFR+L+E+YEREH++P+ DIAAALA Sbjct 390 PLEEMQLPSVEDVNAQRVSKFGDAITENLSSANLPLFRKLIEDYEREHNIPLVDIAAALA 449 Query 432 VQCRGGEAFLM-----------APDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH 480 V G+ F M P +RR ++R +L TYR++VGKRH Sbjct 450 VGSYDGDNFFMEAEPEPERRERVPRERPARRFDEERGGGSHHRATGTELATYRISVGKRH 509 Query 481 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL 540 ++ PGAIVGAIANEGGL RSDFG I I PD SLVELPA+LP TL+ L +TRISGVLI L Sbjct 510 RVVPGAIVGAIANEGGLRRSDFGHISIRPDHSLVELPAQLPAETLEALRRTRISGVLIQL 569 Query 541 RPYRPPDAARRHNGGKPRR 559 + + P A R + G PRR Sbjct 570 QLDQGPPAQRAFSRG-PRR 587 >gi|343924703|ref|ZP_08764245.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia alkanivorans NBRC 16433] gi|343765383|dbj|GAA11171.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia alkanivorans NBRC 16433] Length=595 Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/532 (70%), Positives = 440/532 (83%), Gaps = 7/532 (1%) Query 14 TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLS 73 +F DL+I RV AI DVGYE+P+ IQAATIP LMAG DVVGLAQTGTGKTAAFAIP+LS Sbjct 24 SFDDLEIESRVRAAITDVGYETPSPIQAATIPPLMAGRDVVGLAQTGTGKTAAFAIPILS 83 Query 74 KIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGA 133 ++D +++ PQAL+L PTRELALQV+EAFGRY A++ ++ VLPIYGG SY VQLAGLRRGA Sbjct 84 RLDTSARTPQALILAPTRELALQVSEAFGRYSAHMPEVKVLPIYGGQSYGVQLAGLRRGA 143 Query 134 QVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALF 193 QV+VGTPGR+IDHL++ TLD+S ++FLVLDEADEMLTMGFA+DVERIL+ETP+ KQVALF Sbjct 144 QVIVGTPGRVIDHLDKKTLDISGLEFLVLDEADEMLTMGFAEDVERILAETPDTKQVALF 203 Query 194 SATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLEVEPFE 251 SATMP +IR+L+ +YL P E+T K+KTA A+NI+Q Y+QV+ RK+DALTR LEVE F+ Sbjct 204 SATMPSSIRRLAQRYLKSPQEITVKSKTATAQNITQRYLQVSHQRKLDALTRFLEVEEFD 263 Query 252 AMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAA 311 AMIVFVRTKQATEE+AEKLR+RG SA AI+GD+ QAQRERTI L++G IDILVATDVAA Sbjct 264 AMIVFVRTKQATEELAEKLRSRGLSAVAINGDLAQAQRERTINQLKNGSIDILVATDVAA 323 Query 312 RGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKATRQ 371 RGLDV+RISHV+NYDIPHDTESYVHRIGRTGRAGRSG AL+FVSPRE HLL+AIE+ATRQ Sbjct 324 RGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGNALLFVSPRERHLLRAIERATRQ 383 Query 372 TLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMADIAAALA 431 LTE LP+V+DVN QRVAKF +SIT L ++LFR L+E Y R++DV MADIAAALA Sbjct 384 ELTEIGLPSVDDVNAQRVAKFGESITQNLSSDNLDLFRGLIENYARDNDVAMADIAAALA 443 Query 432 VQCRGGEAFLMAPDPPLS--RRNRDQRRDRPQRPKRRPDLTTYRVAVGKRHKIGPGAIVG 489 ++ R G FL+ PDPP S R NR+QR P+RP TYR+AVG++HK+ PGAIVG Sbjct 444 LETRDG-GFLLTPDPPESEKRANREQRERTPRRPG--ASFATYRIAVGRKHKVSPGAIVG 500 Query 490 AIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDLR 541 AIANEGGL R+DFG I I DFSLVELP L TL +L T+I ID+R Sbjct 501 AIANEGGLTRADFGNISIRDDFSLVELPDDLDNETLSQLRHTKIGKNPIDIR 552 >gi|296139030|ref|YP_003646273.1| DEAD/DEAH box helicase [Tsukamurella paurometabola DSM 20162] gi|296027164|gb|ADG77934.1| DEAD/DEAH box helicase domain protein [Tsukamurella paurometabola DSM 20162] Length=602 Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/569 (67%), Positives = 441/569 (78%), Gaps = 26/569 (4%) Query 14 TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLS 73 TF DL I RVLRA+ +VGYE+P+ IQAATIP L+AG+DVVGLAQTGTGKTAAFA+P+LS Sbjct 29 TFLDLGIDERVLRALAEVGYENPSPIQAATIPPLLAGNDVVGLAQTGTGKTAAFAVPVLS 88 Query 74 KIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGA 133 KID S+ PQALVL PTRELALQV+EAFG+Y ++ + VLPIYGG SY VQL+GLRRGA Sbjct 89 KIDGESRTPQALVLAPTRELALQVSEAFGKYAVHMPNITVLPIYGGQSYGVQLSGLRRGA 148 Query 134 QVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALF 193 Q++VGTPGR+IDHLE+ TLDLS ++FLVLDEADEMLTMGF +DVERIL++TPE+KQVALF Sbjct 149 QIIVGTPGRVIDHLEKGTLDLSNLEFLVLDEADEMLTMGFQEDVERILADTPEFKQVALF 208 Query 194 SATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLEVEPFE 251 SATMPPAIRK++ KYLHDP E++ KAKTA NI+Q Y+QVA RK+DALTR+LEVE F+ Sbjct 209 SATMPPAIRKIAKKYLHDPVEISVKAKTATGSNITQRYLQVAHQRKLDALTRLLEVEEFD 268 Query 252 AMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAA 311 MI+FVRTK ATEE+AEKLRARG +AAAI+GD+ QAQRERTI L+DG +DILVATDVAA Sbjct 269 GMIIFVRTKSATEELAEKLRARGHAAAAINGDIVQAQRERTIGQLKDGKVDILVATDVAA 328 Query 312 RGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKATRQ 371 RGLDVERISHV+NYDIPHDTESYVHRIGRTGRAGR G AL+FV+PRE HLL+AIEKATRQ Sbjct 329 RGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGRKGDALLFVTPRERHLLRAIEKATRQ 388 Query 372 TLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMADIAAALA 431 LTE LP+VEDVN RV KF +SIT L +++FRRL+E+Y +DVP+ D+AAALA Sbjct 389 PLTEIGLPSVEDVNAHRVEKFGESITENLSNDHLQMFRRLIEDYVGANDVPLVDLAAALA 448 Query 432 VQCRGGEAFLMAPDPPLSRRNRDQRRDRP----------------------QRPKRRPDL 469 +Q R G +FL+ PDPP RN R+DR R RP + Sbjct 449 LQSRDGSSFLLQPDPPERERNSRDRKDRDFGDRDDRGRGRRDRDRDREPSVHRKTGRP-M 507 Query 470 TTYRVAVGKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLA 529 YR+AVGKR P AIVGAIANEGGL RSDFG I I PD S+VELP LPR L Sbjct 508 APYRIAVGKRQHATPSAIVGAIANEGGLRRSDFGHISIRPDHSIVELPDDLPREVFDALE 567 Query 530 QTRISGVLIDLRPYRPPDAARRHNGGKPR 558 +TRISG LI+L P R +GGK R Sbjct 568 RTRISGQLINLE-VDPGAPTGRPSGGKQR 595 >gi|262201927|ref|YP_003273135.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247] gi|262085274|gb|ACY21242.1| DEAD/DEAH box helicase domain protein [Gordonia bronchialis DSM 43247] Length=597 Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/540 (69%), Positives = 431/540 (80%), Gaps = 11/540 (2%) Query 9 AASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFA 68 A TF DL I RV A+ DVGYE+P+ IQAATIP LMAG DVVGLAQTGTGKTAAFA Sbjct 13 APDGLTFDDLDIDSRVRAAVSDVGYETPSPIQAATIPPLMAGRDVVGLAQTGTGKTAAFA 72 Query 69 IPMLSKIDITS-----KVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYA 123 IP+LS+++ + PQALVL PTRELALQVAEAFGRY A++ ++ VLPIYGG SY Sbjct 73 IPILSRLEGAGDGSGPRKPQALVLAPTRELALQVAEAFGRYSAHMPEVRVLPIYGGQSYG 132 Query 124 VQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSE 183 VQLAGLRRGAQV+VGTPGR+IDHL+R TLD+S + FLVLDEADEMLTMGFA+DVERIL+E Sbjct 133 VQLAGLRRGAQVIVGTPGRVIDHLDRGTLDISELRFLVLDEADEMLTMGFAEDVERILAE 192 Query 184 TPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDAL 241 TP+ KQVALFSATMP AIR+L+ +YL+DP E+T K+KTA A+NI+Q Y+QV+ RK+DAL Sbjct 193 TPDDKQVALFSATMPSAIRRLAQRYLNDPQEITVKSKTATAQNITQRYLQVSHQRKLDAL 252 Query 242 TRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDI 301 TR LEVE F+AMIVFVRTKQATEE+AEKLR+RGFSA AI+GD+ QAQRERTI L+ G I Sbjct 253 TRFLEVETFDAMIVFVRTKQATEELAEKLRSRGFSAVAINGDMAQAQRERTINQLKSGGI 312 Query 302 DILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHL 361 DILVATDVAARGLDV+RISHV+NYDIPHDTESYVHRIGRTGRAGR+G AL+FVSPRE HL Sbjct 313 DILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRAGNALLFVSPRERHL 372 Query 362 LKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDV 421 L++IE+ATR TLTE LP+VEDVN QRVA+FADSIT L +++FR+L+E Y R++DV Sbjct 373 LRSIERATRSTLTEIGLPSVEDVNAQRVARFADSITENLSSDNLDMFRQLIENYARDNDV 432 Query 422 PMADIAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRHK 481 MADIAAALA++ R G FLMAPDPP R + TYR+AVG++HK Sbjct 433 AMADIAAALALETRDG-GFLMAPDPP---EGDRPPRRERAPRRAGGSFATYRIAVGRKHK 488 Query 482 IGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDLR 541 + PGAIVGAIANEGGL R DFG I I DFSLVELP L TL L TRI ID+R Sbjct 489 VSPGAIVGAIANEGGLTRGDFGNISIRDDFSLVELPDDLDNETLSALRDTRIGRNPIDIR 548 >gi|325676644|ref|ZP_08156320.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707] gi|325552534|gb|EGD22220.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707] Length=453 Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/436 (77%), Positives = 387/436 (89%), Gaps = 2/436 (0%) Query 14 TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLS 73 TFADLQI RVL+A+ DVGYESP+ IQAATIP L+ G DVVGLAQTGTGKTAAFAIP+LS Sbjct 16 TFADLQIDERVLKALSDVGYESPSPIQAATIPTLLEGKDVVGLAQTGTGKTAAFAIPILS 75 Query 74 KIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGA 133 ++D+ KVPQAL+L PTRELALQVAEAFG+Y A++ L VLPIYGG +Y VQL+GLRRGA Sbjct 76 RLDVDRKVPQALILAPTRELALQVAEAFGKYSAHIPGLQVLPIYGGQAYGVQLSGLRRGA 135 Query 134 QVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALF 193 Q++VGTPGR+IDHLE+ TLDLS +++LVLDEADEML MGF DDVERIL++TPEYKQVALF Sbjct 136 QIIVGTPGRVIDHLEKGTLDLSNLEYLVLDEADEMLKMGFQDDVERILADTPEYKQVALF 195 Query 194 SATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLEVEPFE 251 SATMPPAIRK+S +YLHDP E+T KAKTA A NI+Q ++QVA RK+DALTR+LEVE FE Sbjct 196 SATMPPAIRKISKQYLHDPVEITVKAKTATASNITQRWVQVAHQRKLDALTRILEVESFE 255 Query 252 AMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAA 311 AMI+FVRTKQATE++AE+LRARGFSAAAI+GD+ QAQRERTI L+ G +DILVATDVAA Sbjct 256 AMIIFVRTKQATEDLAERLRARGFSAAAINGDIVQAQRERTIGQLKSGALDILVATDVAA 315 Query 312 RGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKATRQ 371 RGLDV+RISHV+NYDIPHDTESYVHRIGRTGRAGR+G AL+FV+PRE HLLK+IE+ TRQ Sbjct 316 RGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRTGDALLFVAPRERHLLKSIERTTRQ 375 Query 372 TLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMADIAAALA 431 LTE QLPTVEDVN QRV+KF DSIT +L + LFR+L+E+YEREHDVP+ADIAAALA Sbjct 376 PLTEIQLPTVEDVNAQRVSKFGDSITESLNSENLALFRKLIEDYEREHDVPLADIAAALA 435 Query 432 VQCRGGEAFLMAPDPP 447 VQ R GE+FLMAP+PP Sbjct 436 VQSRDGESFLMAPEPP 451 >gi|333920975|ref|YP_004494556.1| putative ATP-dependent RNA helicase [Amycolicicoccus subflavus DQS3-9A1] gi|333483196|gb|AEF41756.1| Putative ATP-dependent RNA helicase [Amycolicicoccus subflavus DQS3-9A1] Length=587 Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/546 (64%), Positives = 420/546 (77%), Gaps = 17/546 (3%) Query 13 ATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPML 72 A+FA L I RVLRA+GDVGYE+P+ IQ ATIP L+AG DVVGLAQTGTGKTAAFA P+L Sbjct 9 ASFAGLGIDDRVLRALGDVGYETPSPIQLATIPHLVAGRDVVGLAQTGTGKTAAFATPIL 68 Query 73 SKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRG 132 ++ID PQALVL PTRELA+QVAEAFGRY +L + VLPIYGG SY VQL+GLRRG Sbjct 69 TRIDEEHARPQALVLTPTRELAIQVAEAFGRYSVHLPGIRVLPIYGGQSYGVQLSGLRRG 128 Query 133 AQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVAL 192 A ++VGTPGR+IDHL R TLD+S++ FLVLDEADEML MGF +DVERIL+ PE +Q AL Sbjct 129 AHIIVGTPGRVIDHLTRGTLDISQLRFLVLDEADEMLKMGFQEDVERILAMAPEGRQSAL 188 Query 193 FSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQV--ARKMDALTRVLEVEPF 250 FSATMP AIR++S YL DP EVT K+ T ++ I+Q ++ V ARK+DALTR LEVEPF Sbjct 189 FSATMPRAIREISRTYLRDPAEVTIKSTTKTSDTINQRWVLVSHARKLDALTRFLEVEPF 248 Query 251 EAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVA 310 +AM++FVRTKQAT+E+AEKLRARGF++ +++GD+PQ RER + LR G IDILVATDV Sbjct 249 DAMLIFVRTKQATDELAEKLRARGFASTSLNGDIPQPVRERIVGELRAGKIDILVATDVV 308 Query 311 ARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKATR 370 ARGLDVERISHV+N+DIP D +SYVHRIGRTGRAGRSG AL+FV+PRE LL++IE++T Sbjct 309 ARGLDVERISHVVNFDIPTDNDSYVHRIGRTGRAGRSGEALLFVTPRERRLLRSIERSTG 368 Query 371 QTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMADIAAAL 430 Q L E Q+PTVEDVN QRV++F D+IT L P + LFRRL+E YEREHDV MADIAAAL Sbjct 369 QPLEEIQVPTVEDVNAQRVSRFEDAITENLSNPDLALFRRLIEGYEREHDVCMADIAAAL 428 Query 431 AVQCRGGEAFLMAPDPP----LSRRNRDQRR-------DRPQRPKRR----PDLTTYRVA 475 AVQ G+ F + PDPP R R+ R D+P +RR + TYR+ Sbjct 429 AVQSTDGDTFFLKPDPPERPRSERPGREGREKSGSKFSDKPAGGRRRVAGDRRMATYRIN 488 Query 476 VGKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISG 535 VGK++K+ PGAIVGA+ANEGGL+R DFG I I D+SLVELPA+LP L TRI G Sbjct 489 VGKKNKVAPGAIVGALANEGGLNRDDFGYIDIRSDYSLVELPAELPGEVFDALRATRIGG 548 Query 536 VLIDLR 541 V I LR Sbjct 549 VRIGLR 554 >gi|319950441|ref|ZP_08024356.1| ATP-dependent DEAD-box RNA helicase DeaD [Dietzia cinnamea P4] gi|319435905|gb|EFV91110.1| ATP-dependent DEAD-box RNA helicase DeaD [Dietzia cinnamea P4] Length=679 Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/575 (63%), Positives = 425/575 (74%), Gaps = 23/575 (4%) Query 5 EYSPAASAA-TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGK 63 + +PA AA TFAD+ + P V +A+ DVGYE P+AIQAATIP ++ G DVVGLAQTGTGK Sbjct 40 DEAPAEDAAVTFADMGLAPAVAKAVRDVGYEVPSAIQAATIPLVLEGRDVVGLAQTGTGK 99 Query 64 TAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYA 123 TAAFA+P+LS ID + K PQAL+L PTRELALQVAEA Y A + Q+NVLPIYGG +Y Sbjct 100 TAAFALPILSLIDPSVKSPQALILAPTRELALQVAEACVTYSAGMPQVNVLPIYGGQAYG 159 Query 124 VQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSE 183 +QL+GLRRGAQ++VGTPGR+IDHL++ TLDLS + LVLDEADEML MGF +DVERILS+ Sbjct 160 IQLSGLRRGAQIIVGTPGRVIDHLKKGTLDLSGLRHLVLDEADEMLAMGFQEDVERILSD 219 Query 184 TPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVAR--KMDAL 241 TPE QVALFSATMP AIR++S KYL DP EV +KT+ A I Q Y+ V K+DAL Sbjct 220 TPESTQVALFSATMPSAIRRISQKYLTDPTEVKVASKTSTAPTIQQRYVLVNHRDKLDAL 279 Query 242 TRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDI 301 TR+LEVE F+AMI+FVRTK ATEE+AE+LRARGFSAA I+GD+PQ RERTI AL+DG Sbjct 280 TRILEVEDFDAMIMFVRTKSATEELAERLRARGFSAAPINGDIPQNLRERTIEALKDGRT 339 Query 302 DILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHL 361 DILVATDVAARGLDV RISHV+NYDIPHDTESY+HRIGRTGRAGRSG AL+FV+PRE L Sbjct 340 DILVATDVAARGLDVPRISHVVNYDIPHDTESYIHRIGRTGRAGRSGHALLFVTPRERRL 399 Query 362 LKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDV 421 L IE+ATRQ LTE QLP+V+DVN R+AKFA SIT +L P I LFRRLVEEY EH V Sbjct 400 LSQIERATRQPLTEVQLPSVDDVNEMRMAKFAQSITESLDDPNIALFRRLVEEYASEHSV 459 Query 422 PMADIAAALAVQCRGGEAFLM-APDPPLSRRNRDQR-------------RDRPQRPKRRP 467 MADIAAALA Q R + FLM P+ P RR R D P+ + Sbjct 460 SMADIAAALATQSRNSDEFLMREPERP-QRRERQDDRGGDRRDRPARNFSDGPRPSRSGK 518 Query 468 DLTTYRVAVGKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKK 527 D+ YR+AVGKR+ + PG+I+GA+ANE GL D G+I I D S+VELPA LP L+ Sbjct 519 DMAQYRIAVGKRNNVKPGSIMGALANEAGLSGGDIGRISIRFDHSIVELPAGLPSDQLES 578 Query 528 LAQTRISGVLIDLRPYRP-----PDAARRHNGGKP 557 + R+ G ID+RP P + R GGKP Sbjct 579 MKGIRVGGAEIDIRPDSGAPAGRPSSFRDDRGGKP 613 >gi|84498694|ref|ZP_00997447.1| ATP-dependent RNA helicase [Janibacter sp. HTCC2649] gi|84381031|gb|EAP96918.1| ATP-dependent RNA helicase [Janibacter sp. HTCC2649] Length=601 Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/583 (61%), Positives = 420/583 (73%), Gaps = 43/583 (7%) Query 14 TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLS 73 TF+DL + RVLRA+ DVGYE+P+ IQAATIPAL+AG VVGLAQTGTGKTAAFA+P+LS Sbjct 22 TFSDLGLDERVLRALKDVGYETPSPIQAATIPALLAGRHVVGLAQTGTGKTAAFALPILS 81 Query 74 KIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGA 133 ++D+ K PQALVL PTRELALQV EAF +Y + + ++VLP+YGG +Y VQL+ LRRG Sbjct 82 RLDLKQKTPQALVLAPTRELALQVCEAFEKYASRMPGVHVLPVYGGQAYGVQLSALRRGV 141 Query 134 QVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALF 193 +VVGTPGR++DHLE+ TLDLS + FLVLDEADEML MGFA+DVE IL++TP K VALF Sbjct 142 HIVVGTPGRIMDHLEKGTLDLSELRFLVLDEADEMLKMGFAEDVETILADTPAEKHVALF 201 Query 194 SATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLEVEPFE 251 SATMP IR++S KYL D E+T + T A NI+Q Y+ + +K+DALTR+LEVE FE Sbjct 202 SATMPSQIRRISKKYLTDALEITVERTTETAPNITQRYLFCSYPQKIDALTRILEVENFE 261 Query 252 AMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAA 311 MIVFVRTK TE +AEKLRARGFSA AI+GD+ Q QRERT+ L+ G +DILVATDVAA Sbjct 262 GMIVFVRTKNETEMLAEKLRARGFSATAINGDIAQNQRERTVAQLKSGKLDILVATDVAA 321 Query 312 RGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKATRQ 371 RGLDVERISHV+NYDIP DTESYVHRIGRTGRAGRSG A+ FV+PRE +LLKAIEKAT+ Sbjct 322 RGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAISFVTPREKYLLKAIEKATKT 381 Query 372 TLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMADIAAALA 431 TLTE QLP+VED+N R+ +F D IT AL I+ FR ++ Y R HDVP AD+AAALA Sbjct 382 TLTEMQLPSVEDINATRLGRFDDRITTALASSDIDAFRDVIAHYVRNHDVPEADVAAALA 441 Query 432 VQCRGGEAFLMAPDPPL-SRRNRD--------------QRRDR----------PQRPKRR 466 + +G E L+ PDP RR RD +R DR +RP RR Sbjct 442 IVLQGDEPMLLGPDPVRPPRRERDSGAQGGRDFSDRGPRRDDRGGSRFDKGGSGERPARR 501 Query 467 PD---LTTYRVAVGKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRA 523 + TY++AVG+RHK+ P IVGA+ANEGGL R DFG I I D SLVELPA LP Sbjct 502 GSNVPMATYKIAVGRRHKVEPRQIVGALANEGGLGRQDFGHIDIRADHSLVELPATLPAG 561 Query 524 TLKKLAQTRISGVLIDL--------RPYRPPDAARRHNGGKPR 558 T L TRISG LI+L RP + P H G PR Sbjct 562 TWDLLRTTRISGQLIELTESSERGGRPDKKP-----HRKGGPR 599 >gi|148272405|ref|YP_001221966.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830335|emb|CAN01269.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length=586 Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/574 (60%), Positives = 431/574 (76%), Gaps = 22/574 (3%) Query 7 SPAASAA---TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGK 63 +P A AA TF+DL + +VL+A+ DVGYE+P+AIQAATIP+L++G DV+G+AQTGTGK Sbjct 9 TPDADAAPRTTFSDLGLSDQVLKALKDVGYETPSAIQAATIPSLLSGRDVLGVAQTGTGK 68 Query 64 TAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYA 123 TAAFA+P+LS +D++ K PQALVL PTRELALQV EAF RY + + ++VLP+YGG Y Sbjct 69 TAAFALPILSNLDVSQKTPQALVLAPTRELALQVCEAFERYASGMRGVHVLPVYGGQGYG 128 Query 124 VQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSE 183 VQL+ LRRG VVVGTPGR++DHL++ TLDLS++ FLVLDEADEML MGFA+DVE IL++ Sbjct 129 VQLSALRRGVHVVVGTPGRIMDHLDKGTLDLSQLKFLVLDEADEMLKMGFAEDVETILAD 188 Query 184 TPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDAL 241 TP+ KQ+ALFSATMP IR++S KYL DP E+T K KT + N +Q Y+ V+ +K+DAL Sbjct 189 TPKSKQIALFSATMPAQIRRISGKYLQDPEEITVKNKTTTSANTTQRYLMVSYPQKVDAL 248 Query 242 TRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDI 301 TR+LE E FE MIVFVRTK TE +AEKLRARG++AAAISGDV QAQRERT+ L++G + Sbjct 249 TRILETENFEGMIVFVRTKNETETLAEKLRARGYAAAAISGDVAQAQRERTVEQLKNGKL 308 Query 302 DILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHL 361 DILVATDVAARGLDV+RISHV+NYDIP DTESYVHRIGRTGRAGRSGAA+ FV+PRE L Sbjct 309 DILVATDVAARGLDVDRISHVVNYDIPIDTESYVHRIGRTGRAGRSGAAISFVTPRERRL 368 Query 362 LKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGG-PGIELFRRLVEEYEREHD 420 L AIEKATRQ LTE ++P+ EDVN R+++F D+IT AL ++ FR +V Y HD Sbjct 369 LTAIEKATRQPLTEMRMPSAEDVNVTRLSRFDDAITAALADRERLDAFRDIVGHYVNHHD 428 Query 421 VPMADIAAALAVQCRGGEAFLMAPDPPLSR------------RNRDQRRDRPQRPKR-RP 467 V +D+AAALA+ +G L++ D R+ D+R +R RP R Sbjct 429 VVESDVAAALAIVAQGDTPLLLSADDLRPPRVERERRDDRPGRDGDERGERRARPARGSG 488 Query 468 DLTTYRVAVGKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKK 527 ++ TYR+ VG+RH++ P IVGA+ANEGG R DFG I I PDFSLVELPA LP+ + + Sbjct 489 NMATYRIDVGRRHRVEPRQIVGALANEGGFSREDFGHIDIRPDFSLVELPAGLPQDRIDR 548 Query 528 LAQTRISGVLIDLRPYR-PPDAARRHNGGKPRRK 560 LA T I+G ID+RP R P AA R G P R+ Sbjct 549 LASTVINGRPIDIRPDRGGPRAAER--GAAPERR 580 >gi|119718818|ref|YP_925783.1| DEAD/DEAH box helicase domain-containing protein [Nocardioides sp. JS614] gi|119539479|gb|ABL84096.1| ATP-dependent RNA helicase CsdA [Nocardioides sp. JS614] Length=589 Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/575 (63%), Positives = 419/575 (73%), Gaps = 30/575 (5%) Query 14 TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLS 73 TFADL + +VL+A+ DVGYE P+AIQAATIP L+AG DVVGLAQTGTGKTAAFA+P+LS Sbjct 15 TFADLGLSDQVLKALADVGYEKPSAIQAATIPPLLAGRDVVGLAQTGTGKTAAFALPILS 74 Query 74 KIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGA 133 ++D+T PQALVL PTRELALQV EAF RY A++ ++VLP+YGG Y VQL+ LRRG Sbjct 75 RLDLTQTTPQALVLAPTRELALQVCEAFERYAAHVKGVHVLPVYGGQGYGVQLSALRRGV 134 Query 134 QVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALF 193 VVVGTPGR++DHLE+ TLDLS + FLVLDEADEML MGFA+DVE IL++TP+ K VALF Sbjct 135 HVVVGTPGRIMDHLEKGTLDLSELRFLVLDEADEMLNMGFAEDVETILADTPDDKNVALF 194 Query 194 SATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLEVEPFE 251 SATMP IR++S KYL DP E+T K KTA A NI+Q Y+ V+ +K+DALTR+LEVE FE Sbjct 195 SATMPAQIRRISKKYLDDPAEITVKGKTATASNITQRYLTVSYPQKVDALTRILEVENFE 254 Query 252 AMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAA 311 MIVFVRTK TE +AEKLRARG SA AI+GDV QAQRERT+ L+ G +DILVATDVAA Sbjct 255 GMIVFVRTKNETETLAEKLRARGLSAMAINGDVAQAQRERTVNQLKSGKLDILVATDVAA 314 Query 312 RGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKATRQ 371 RGLDVERISHV+NYDIP DTESYVHRIGRTGRAGRSG A+ FV+PRE +LLK IEKATRQ Sbjct 315 RGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAISFVTPRERYLLKHIEKATRQ 374 Query 372 TLTEAQLPTVEDVNTQRVAKFADSITNALGGPG-IELFRRLVEEYEREHDVPMADIAAAL 430 LT+ QLPTVEDVN+ R+++F D+IT AL I+ FR +V Y REHDVP AD+AAAL Sbjct 375 PLTQMQLPTVEDVNSTRLSRFDDAITEALSQTQRIDAFRDIVAHYVREHDVPEADVAAAL 434 Query 431 AVQCRGGEAFLMAP--------DPPLSRRNRDQRRDRPQRPKRRPD-------------- 468 AV +G L+ P P R + RRDR Sbjct 435 AVVAQGETPLLLDPADRANELRAPREERAGQGTRRDRHDHGGPGGHGGPPRERRPRGRSD 494 Query 469 --LTTYRVAVGKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLK 526 + TYR+AVGKRHK+ P IVGAIANEGGL R DFG I I D SLVELPA LP Sbjct 495 VPMATYRIAVGKRHKVEPRQIVGAIANEGGLSRQDFGHIDIRGDHSLVELPADLPAGAWD 554 Query 527 KLAQTRISGVLIDL-RPYRPPDAARRHNGGKPRRK 560 L TRISG LI+L R P A RH KPR K Sbjct 555 SLRSTRISGKLIELTRDGGGPAADTRHK--KPRHK 587 >gi|237785892|ref|YP_002906597.1| ATP-dependent RNA helicase [Corynebacterium kroppenstedtii DSM 44385] gi|237758804|gb|ACR18054.1| ATP-dependent RNA helicase [Corynebacterium kroppenstedtii DSM 44385] Length=823 Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/540 (62%), Positives = 405/540 (75%), Gaps = 23/540 (4%) Query 26 RAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSKIDITSKVPQAL 85 RA+ VG+E+P+ IQAATIP L G DVVGLAQTGTGKTAAFA+P+LS++D + K PQAL Sbjct 167 RAVKKVGFETPSPIQAATIPILAQGRDVVGLAQTGTGKTAAFALPILSRLDRSQKKPQAL 226 Query 86 VLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGAQVVVGTPGRMID 145 VL PTRELALQVA+AF + +L ++VLPIYGG SY +QL+GLRRGA +VVGTPGR+ID Sbjct 227 VLSPTRELALQVADAFQEFADHLGGVHVLPIYGGQSYGIQLSGLRRGAHIVVGTPGRVID 286 Query 146 HLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALFSATMPPAIRKLS 205 HLER +LDLS + +LVLDEADEML MGF +DVERIL++TPE+KQ ALFSATMP +IR+LS Sbjct 287 HLERGSLDLSELKYLVLDEADEMLNMGFQEDVERILADTPEHKQTALFSATMPASIRRLS 346 Query 206 AKYLHDPFEVTCKAKTAVAENISQSYIQVAR--KMDALTRVLEVEPFEAMIVFVRTKQAT 263 +YL DP EVT K++ A+NI Q Y+ V K+DALTR+LEV F+AMI+F RTKQ T Sbjct 347 KQYLEDPREVTIKSQQRTADNIHQQYLLVNHHYKLDALTRILEVTEFDAMIMFARTKQNT 406 Query 264 EEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAARGLDVERISHVL 323 EE+AEKLRARGFSAAAI+GD+ Q QRERT+ LRDG +DILVATDVAARGLDVERISHV+ Sbjct 407 EELAEKLRARGFSAAAINGDMAQNQRERTVDQLRDGRLDILVATDVAARGLDVERISHVV 466 Query 324 NYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKATRQTLTEAQLPTVED 383 NYDIPHDTESYVHRIGRTGRAGRSG A++FV+PRE LL++IE+AT+ ++ E QLPTV++ Sbjct 467 NYDIPHDTESYVHRIGRTGRAGRSGEAILFVTPRERRLLRSIERATKSSIEEMQLPTVDE 526 Query 384 VNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMADIAAALAVQCRGGEAFLMA 443 VN R AKFA SIT +L P ++LFR L+ Y EH+ P+ADIAAALA Q + G+ FL+ Sbjct 527 VNETRKAKFAQSITESLADPQVDLFRGLINSYAEEHETPLADIAAALATQSQSGDEFLLK 586 Query 444 PD-------------------PPLSRRNRDQRRDRPQRPKRR--PDLTTYRVAVGKRHKI 482 D P N P R R ++ Y++AVGKR ++ Sbjct 587 EDTIRRNDRRNDRRGRRNDREPDTRSLNERFSGKEPPRFTDRTGKEMAVYKIAVGKRQQV 646 Query 483 GPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDLRP 542 PGAIVGAIANEGGL+ DFG+I I + SLVELPA LP + L TR+SG LI + P Sbjct 647 RPGAIVGAIANEGGLNSRDFGKISIFSEHSLVELPADLPMEVFEALEDTRVSGQLIKIEP 706 >gi|317124106|ref|YP_004098218.1| ATP-dependent RNA helicase CsdA [Intrasporangium calvum DSM 43043] gi|315588194|gb|ADU47491.1| ATP-dependent RNA helicase CsdA [Intrasporangium calvum DSM 43043] Length=605 Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/564 (62%), Positives = 418/564 (75%), Gaps = 31/564 (5%) Query 8 PAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAF 67 P TFADL + R+L+A D+GYE P+ IQAATIPA++ G DVVGLAQTGTGKTAAF Sbjct 21 PTVDEPTFADLGLDERILKATRDLGYEHPSPIQAATIPAMLEGRDVVGLAQTGTGKTAAF 80 Query 68 AIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLA 127 A+P+L+++D+ K PQALVL PTRELALQV EAF RY A L ++VLP+YGG Y VQL+ Sbjct 81 ALPILARLDLKQKTPQALVLAPTRELALQVCEAFERYAANLRGVHVLPVYGGQGYGVQLS 140 Query 128 GLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEY 187 LRRG VVVGTPGR++DHLE+ TLDLS + FLVLDEADEML MGFA+DVE IL++TP Sbjct 141 ALRRGVHVVVGTPGRIMDHLEKGTLDLSELRFLVLDEADEMLKMGFAEDVETILADTPAD 200 Query 188 KQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVL 245 KQVALFSATMP IR++S ++L DP E+T KAKT A NI+Q Y+ V+ +K+DALTR+L Sbjct 201 KQVALFSATMPAQIRRISKQHLTDPVEITVKAKTTTAPNITQRYLIVSYPQKVDALTRIL 260 Query 246 EVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILV 305 EVE FE MIVFVRTK TE +AEKLRARGFSAAAI+GD+ QAQRERT+ LR G +DILV Sbjct 261 EVENFEGMIVFVRTKNETETLAEKLRARGFSAAAINGDIVQAQRERTVDQLRSGKLDILV 320 Query 306 ATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAI 365 ATDVAARGLDVERISHV+N+DIP DTESYVHRIGRTGRAGRSG A+ FV+PRE HLLKAI Sbjct 321 ATDVAARGLDVERISHVVNFDIPTDTESYVHRIGRTGRAGRSGDAISFVTPRERHLLKAI 380 Query 366 EKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMAD 425 EKATRQ LTE + PTVED+N R+ +F D+IT AL ++LFR++V Y E+DVP AD Sbjct 381 EKATRQGLTEMRPPTVEDINEVRLGRFDDAITAALQNEQLDLFRQVVSHYVAEYDVPEAD 440 Query 426 IAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDR----------------------PQ-- 461 +AAALA+ + GE L+ P+P + R R DR PQ Sbjct 441 VAAALAIVQQRGEPMLLDPEPEPAPRRGRDRDDRPDRGDRPVRSDRSDRSDRPDRGPQRD 500 Query 462 -----RPKRRPDLTTYRVAVGKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVEL 516 + TYR+AVGKRH++ P IVGA+ANEGGL R DFG+I I DFSLVEL Sbjct 501 RPDRGPRRGSASFATYRIAVGKRHRVLPRQIVGALANEGGLGREDFGKIDIRGDFSLVEL 560 Query 517 PAKLPRATLKKLAQTRISGVLIDL 540 P +LP +T ++L TRISG LI+L Sbjct 561 PQELPASTWQRLRDTRISGQLIEL 584 >gi|88856286|ref|ZP_01130945.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1] gi|88814370|gb|EAR24233.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1] Length=638 Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/575 (60%), Positives = 430/575 (75%), Gaps = 26/575 (4%) Query 11 SAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIP 70 +A TF+DL + VL+A+ ++GYE+P+AIQAATIP L+ G DVVGLAQTGTGKTAAFA+P Sbjct 15 TAITFSDLALSDAVLKAVREIGYETPSAIQAATIPTLLEGRDVVGLAQTGTGKTAAFALP 74 Query 71 MLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLR 130 +LS++D++ PQALVL PTRELALQV EAF +Y ++ ++VLP+YGG +Y VQL+ LR Sbjct 75 ILSRLDVSQSKPQALVLSPTRELALQVCEAFEKYATHMRGVHVLPVYGGQAYGVQLSALR 134 Query 131 RGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQV 190 RG VVVGTPGR++DHL + TLDLS + +LVLDEADEML MGFA+DVE IL++TPE KQV Sbjct 135 RGVHVVVGTPGRIMDHLAKGTLDLSELKYLVLDEADEMLKMGFAEDVETILADTPEDKQV 194 Query 191 ALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLEVE 248 ALFSATMP IR++S KYL D E+T K++T + N SQ Y+ V+ +K+DALTR+LEVE Sbjct 195 ALFSATMPAQIRRISKKYLRDAEEITVKSQTTTSANTSQRYLVVSYPQKVDALTRILEVE 254 Query 249 PFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATD 308 FE MIVFVRTK TE +AEKLRARG+SAAAISGDV QAQRERT+ L+ G +DILVATD Sbjct 255 NFEGMIVFVRTKSETENLAEKLRARGYSAAAISGDVAQAQRERTVNQLKSGKLDILVATD 314 Query 309 VAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKA 368 VAARGLDV+RISHV+N+DIP DTESYVHRIGRTGRAGRSG+A+ FV+PRE LL AIEKA Sbjct 315 VAARGLDVDRISHVVNFDIPVDTESYVHRIGRTGRAGRSGSAISFVTPRERRLLTAIEKA 374 Query 369 TRQTLTEAQLPTVEDVNTQRVAKFADSITNALG-GPGIELFRRLVEEYEREHDVPMADIA 427 TRQ LT+ QLP+VEDVN+ R+ +F D+IT AL P I FR ++ Y HD+P D+A Sbjct 375 TRQPLTQMQLPSVEDVNSTRLTRFDDAITEALNQQPRISAFRDIIAHYVEHHDIPETDVA 434 Query 428 AALAVQCRGGEAFLMAPDPPLSRR-----NRDQRRDRPQ------------RPKRRPD-- 468 AALAV +G L++ + ++R R+ R DRP+ RP+RRP Sbjct 435 AALAVVAQGDTPLLLSAEEERAQRFSEREERNSRTDRPERGGDRGGDRGGDRPERRPRST 494 Query 469 --LTTYRVAVGKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLK 526 +T YR+ VGKR ++ P IVGA+ANEGGL R DFG I+I PDFSLVELPA + + L+ Sbjct 495 KPMTAYRIEVGKRQRVEPRQIVGALANEGGLSRDDFGHIQIRPDFSLVELPADMSKDVLE 554 Query 527 KLAQTRISGVLIDLRPYRPPD--AARRHNGGKPRR 559 +L TRISG LI++ P R + AR +G P R Sbjct 555 RLRDTRISGKLIEISPDRKANGGGARGADGKYPSR 589 >gi|312197808|ref|YP_004017869.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c] gi|311229144|gb|ADP81999.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c] Length=566 Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/565 (63%), Positives = 423/565 (75%), Gaps = 28/565 (4%) Query 14 TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLS 73 TF DL + VLRA+ ++GYE P+ IQA TIPAL+ G DVVGLAQTGTGKTAAFA+P+LS Sbjct 9 TFHDLGLGSPVLRALTELGYEVPSPIQAGTIPALLDGRDVVGLAQTGTGKTAAFALPILS 68 Query 74 KIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGA 133 +ID S QALVL PTREL LQVAEAFGRY +L+ L+VLP+YGG +YA QLAG RRGA Sbjct 69 RIDARSTATQALVLAPTRELVLQVAEAFGRYAHHLTGLHVLPVYGGQAYAPQLAGFRRGA 128 Query 134 QVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALF 193 QVVVGTPGR+IDHLER TLDL + LVLDEADEML MGF ++V+RIL++TP+ KQVALF Sbjct 129 QVVVGTPGRVIDHLERGTLDLGGLRMLVLDEADEMLRMGFQEEVDRILADTPDAKQVALF 188 Query 194 SATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLEVEPFE 251 SATMP IR++S +YL DP E+T +A+T A N Q ++ VA RKMDALTRVLEVEPFE Sbjct 189 SATMPAPIRRISRQYLRDPVEITVRARTVTAANTRQRFLTVAGPRKMDALTRVLEVEPFE 248 Query 252 AMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAA 311 AMI+FVRTK ATE++AE+LR+RGF+ AI+GD+ Q QRE+ I LRDG +D+LVATDVAA Sbjct 249 AMIIFVRTKSATEDVAERLRSRGFATEAINGDLSQPQREKLIAQLRDGTLDLLVATDVAA 308 Query 312 RGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKATRQ 371 RGLDVERI+HV+NYDIP D ESYVHRIGRTGRAGRSG AL+ V+PRE LL AIEKATRQ Sbjct 309 RGLDVERITHVVNYDIPTDPESYVHRIGRTGRAGRSGEALLLVTPREKGLLAAIEKATRQ 368 Query 372 TLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMADIAAALA 431 LTE +LPT DVN +RVAKF D+IT AL P +FR LV Y EHDVP+ADIAAALA Sbjct 369 PLTEMELPTPADVNARRVAKFHDAITAALDAPAHAVFRDLVLGYVGEHDVPLADIAAALA 428 Query 432 VQCRG--GEAFLMAPD--PPLSRRNRDQRRDRPQR--PKRRPDLTTYRVAVGKRHKIGPG 485 V R GE FL+ PD PP R++P R + RP +YR+ VG ++ PG Sbjct 429 VMTRQEPGE-FLLPPDTAPPA--------REKPARGAGRPRPVYASYRIGVGHYQRVTPG 479 Query 486 AIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDLRPYRP 545 IVGA+ANEGGL R+DFG+I I D+SLVELPA L + + L +TRI+G ++LRP RP Sbjct 480 QIVGALANEGGLDRADFGRIDIRADYSLVELPADLSKDAQRALTRTRIAGQPLNLRPERP 539 Query 546 -------PDAARRHN----GGKPRR 559 P A RR N G+ RR Sbjct 540 GRDSGARPGANRRGNPAPSAGRTRR 564 >gi|145295298|ref|YP_001138119.1| hypothetical protein cgR_1238 [Corynebacterium glutamicum R] gi|140845218|dbj|BAF54217.1| hypothetical protein [Corynebacterium glutamicum R] gi|344045730|gb|EGV41400.1| hypothetical protein CgS9114_03408 [Corynebacterium glutamicum S9114] Length=729 Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/577 (60%), Positives = 426/577 (74%), Gaps = 31/577 (5%) Query 5 EYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKT 64 E S + + F L + RVL A+ VGYE+P+ IQA TIP LM G DVVGLAQTGTGKT Sbjct 94 ESSSTEAKSGFDALGLPERVLDAVRKVGYETPSPIQAQTIPILMEGQDVVGLAQTGTGKT 153 Query 65 AAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAV 124 AAFA+P+LS+ID + + PQALVL PTRELALQVA++F + ++ LNVLPIYGG +Y + Sbjct 154 AAFALPILSRIDKSVRSPQALVLAPTRELALQVADSFQSFADHVGGLNVLPIYGGQAYGI 213 Query 125 QLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSET 184 QL+GLRRGA +VVGTPGR+IDHLE+ +LD+S + FLVLDEADEML MGF +DVERIL +T Sbjct 214 QLSGLRRGAHIVVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLNMGFQEDVERILEDT 273 Query 185 PEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALT 242 P+ KQVALFSATMP IR+LS +YL++P E+T K++T NI+Q ++ VA KMDALT Sbjct 274 PDEKQVALFSATMPNGIRRLSKQYLNNPAEITVKSETRTNTNITQRFLNVAHRNKMDALT 333 Query 243 RVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDID 302 R+LEV FEAMI+FVRTK TEE+AEKLRARGFSAAAI+GD+ QAQRERT+ L+DG +D Sbjct 334 RILEVTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLD 393 Query 303 ILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLL 362 ILVATDVAARGLDVERISHVLN+DIP+DTESYVHRIGRTGRAGR+G A++FV+PRE +L Sbjct 394 ILVATDVAARGLDVERISHVLNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRML 453 Query 363 KAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVP 422 ++IE+AT L E +LPTV+ VN R KFADSIT +L ++LFR LV+EY + +DVP Sbjct 454 RSIERATNAPLHEMELPTVDQVNDFRKVKFADSITKSLEDKQMDLFRTLVKEYSQANDVP 513 Query 423 MADIAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQR-------------------P 463 + DIAAALA Q + G+ FL+ PP R D+RRDR Sbjct 514 LEDIAAALATQAQSGD-FLLKELPPERRERNDRRRDRDFDDRGGRGRDRGDRGDRGSRFD 572 Query 464 KRRPDLTTYRVAVGKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRA 523 + +L TYR+AVGKR I PGAIVGA+ANEGGL+ DFG+I I D +LVELP LP++ Sbjct 573 RDDENLATYRLAVGKRQHIRPGAIVGALANEGGLNSKDFGRITIAADHTLVELPKDLPQS 632 Query 524 TLKKLAQTRISGVLIDLRPYRPPDAARRHNGGKPRRK 560 L L TRISG LI++ R +GG+P R+ Sbjct 633 VLDNLRDTRISGQLINI---------ERDSGGRPPRR 660 >gi|50954992|ref|YP_062280.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951474|gb|AAT89175.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07] Length=589 Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/566 (63%), Positives = 427/566 (76%), Gaps = 19/566 (3%) Query 5 EYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKT 64 E AA A TFADL + VL + DVGYE+P+AIQAATIP L+ G DVVGLAQTGTGKT Sbjct 9 EAETAADALTFADLGLDRAVLAVLKDVGYETPSAIQAATIPLLLEGRDVVGLAQTGTGKT 68 Query 65 AAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAV 124 AAFA+P+LS++D++ K PQALVL PTRELALQVAEAF Y +L +++LP+YGG Y V Sbjct 69 AAFALPILSRLDLSQKSPQALVLAPTRELALQVAEAFESYATHLKGVHLLPVYGGQGYGV 128 Query 125 QLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSET 184 QL+ LRRG +VVGTPGR++DHL++ TLDLS + LVLDEADEML MGFA+DVE+IL++T Sbjct 129 QLSALRRGVHIVVGTPGRIMDHLDKGTLDLSGLKHLVLDEADEMLKMGFAEDVEKILADT 188 Query 185 PEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQV--ARKMDALT 242 P+ KQVALFSATMP IR++S KYLHDP EVT KA+T + N +Q Y+ V ++K+DALT Sbjct 189 PDDKQVALFSATMPAQIRRISKKYLHDPEEVTVKARTTTSANTTQRYLVVSYSQKVDALT 248 Query 243 RVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDID 302 R+LEVE FEAMIVFVRTK TE +AE+LRARG+SAAAISGDV QAQRERT+ L+ G +D Sbjct 249 RILEVENFEAMIVFVRTKNETETLAERLRARGYSAAAISGDVAQAQRERTVGQLKSGKLD 308 Query 303 ILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLL 362 ILVATDVAARGLDV+RISHV+N+DIP DTESYVHRIGRTGRAGRSGAA+ FV+ RE LL Sbjct 309 ILVATDVAARGLDVDRISHVVNFDIPVDTESYVHRIGRTGRAGRSGAAISFVTTRERRLL 368 Query 363 KAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPG-IELFRRLVEEYEREHDV 421 AIEKATRQ LT LP+V+DVN R+A+F D+IT+AL I FR ++ Y HDV Sbjct 369 TAIEKATRQPLTPMPLPSVDDVNVTRLARFDDAITSALAQQDRISRFRDIIAHYVAHHDV 428 Query 422 PMADIAAALAVQCRGGEAFLMAPDPPLSRR-NRDQRRD-----------RPQRPKRRPD- 468 P AD+AAALAV +G E L++ D L++R RD R D R +RP RR Sbjct 429 PEADVAAALAVVAQGEEPLLLSADDALTQRIERDARDDRLARAGRDDRGRGERPVRRDRG 488 Query 469 ---LTTYRVAVGKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATL 525 + YR+ VGKR ++ P IVGA+ANEGGL R DFG IRI PDFS+VELPA LP TL Sbjct 489 YRPMAPYRIEVGKRQRVEPRQIVGALANEGGLSRDDFGHIRIMPDFSIVELPADLPGDTL 548 Query 526 KKLAQTRISGVLIDLRPYRPPDAARR 551 +L TRISG LI+LRP R A R+ Sbjct 549 ARLTGTRISGKLIELRPDRGAGARRK 574 >gi|19552380|ref|NP_600382.1| putative helicase [Corynebacterium glutamicum ATCC 13032] gi|21323923|dbj|BAB98549.1| Superfamily II DNA and RNA helicases [Corynebacterium glutamicum ATCC 13032] Length=732 Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/579 (60%), Positives = 426/579 (74%), Gaps = 33/579 (5%) Query 5 EYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKT 64 E S + + F L + RVL A+ VGYE+P+ IQA TIP LM G DVVGLAQTGTGKT Sbjct 94 ESSSTEAKSGFDALGLPERVLDAVRKVGYETPSPIQAQTIPILMEGQDVVGLAQTGTGKT 153 Query 65 AAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAV 124 AAFA+P+L++ID + + PQALVL PTRELALQVA++F + ++ LNVLPIYGG +Y + Sbjct 154 AAFALPILARIDKSVRSPQALVLAPTRELALQVADSFQSFADHVGGLNVLPIYGGQAYGI 213 Query 125 QLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSET 184 QL+GLRRGA +VVGTPGR+IDHLE+ +LD+S + FLVLDEADEML MGF +DVERIL +T Sbjct 214 QLSGLRRGAHIVVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLNMGFQEDVERILEDT 273 Query 185 PEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALT 242 P+ KQVALFSATMP IR+LS +YL++P E+T K++T NI+Q ++ VA KMDALT Sbjct 274 PDEKQVALFSATMPNGIRRLSKQYLNNPAEITVKSETRTNTNITQRFLNVAHRNKMDALT 333 Query 243 RVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDID 302 R+LEV FEAMI+FVRTK TEE+AEKLRARGFSAAAI+GD+ QAQRERT+ L+DG +D Sbjct 334 RILEVTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLD 393 Query 303 ILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLL 362 ILVATDVAARGLDVERISHVLN+DIP+DTESYVHRIGRTGRAGR+G A++FV+PRE +L Sbjct 394 ILVATDVAARGLDVERISHVLNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRML 453 Query 363 KAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVP 422 ++IE+AT L E +LPTV+ VN R KFADSIT +L ++LFR LV+EY + +DVP Sbjct 454 RSIERATNAPLHEMELPTVDQVNDFRKVKFADSITKSLEDKQMDLFRTLVKEYSQANDVP 513 Query 423 MADIAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQR-------------------- 462 + DIAAALA Q + G+ FL+ PP R D+RRDR Sbjct 514 LEDIAAALATQAQSGD-FLLKELPPERRERNDRRRDRDFDDRGGRGRDRDRGDRGDRGSR 572 Query 463 -PKRRPDLTTYRVAVGKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLP 521 + +L TYR+AVGKR I PGAIVGA+ANEGGL+ DFG+I I D +LVELP LP Sbjct 573 FDRDDENLATYRLAVGKRQHIRPGAIVGALANEGGLNSKDFGRITIAADHTLVELPKDLP 632 Query 522 RATLKKLAQTRISGVLIDLRPYRPPDAARRHNGGKPRRK 560 ++ L L TRISG LI++ R +GG+P R+ Sbjct 633 QSVLDNLRDTRISGQLINI---------ERDSGGRPPRR 662 >gi|170782231|ref|YP_001710564.1| cold-shock DEAD-box RNA helicase [Clavibacter michiganensis subsp. sepedonicus] gi|169156800|emb|CAQ01964.1| cold-shock DEAD-box RNA helicase [Clavibacter michiganensis subsp. sepedonicus] Length=585 Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/576 (60%), Positives = 426/576 (74%), Gaps = 26/576 (4%) Query 7 SPAASAA---TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGK 63 SP+ + A TF+DL + +VL+A+ DVGYE+P+AIQAATIP+L++G DV+G+AQTGTGK Sbjct 8 SPSETDAPRTTFSDLGLSDQVLKALKDVGYETPSAIQAATIPSLLSGRDVLGVAQTGTGK 67 Query 64 TAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYA 123 TAAFA+P+LS +D+ K PQALVL PTRELALQV EAF RY + + ++VLP+YGG Y Sbjct 68 TAAFALPILSNLDVAQKTPQALVLAPTRELALQVCEAFERYASGMRGVHVLPVYGGQGYG 127 Query 124 VQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSE 183 VQL+ LRRG VVVGTPGR++DHL++ TLDLS++ FLVLDEADEML MGFA+DVE IL++ Sbjct 128 VQLSALRRGVHVVVGTPGRIMDHLDKGTLDLSQLKFLVLDEADEMLKMGFAEDVETILAD 187 Query 184 TPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDAL 241 TP+ KQ+ALFSATMP IR++S KYL DP E+T K KT + N +Q Y+ V+ +K+DAL Sbjct 188 TPKSKQIALFSATMPAQIRRISGKYLQDPEEITVKNKTTTSANTTQRYLMVSYPQKVDAL 247 Query 242 TRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDI 301 TR+LE E FE MIVFVRTK TE +AEKLRARG++AAAISGDV QAQRERT+ L++G + Sbjct 248 TRILETENFEGMIVFVRTKNETETLAEKLRARGYAAAAISGDVAQAQRERTVEQLKNGKL 307 Query 302 DILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHL 361 DILVATDVAARGLDV+RISHV+NYDIP DTESYVHRIGRTGRAGRSGAA+ FV+PRE L Sbjct 308 DILVATDVAARGLDVDRISHVVNYDIPIDTESYVHRIGRTGRAGRSGAAISFVTPRERRL 367 Query 362 LKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGG-PGIELFRRLVEEYEREHD 420 L AIEKATRQ LTE ++P+ EDVN R+++F D+IT AL ++ FR +V Y HD Sbjct 368 LTAIEKATRQPLTEMRMPSAEDVNVTRLSRFDDAITAALADRERLDAFRDIVGHYVNHHD 427 Query 421 VPMADIAAALAVQCRGGEAFLMAPDP---------------PLSRRNRDQRRDRPQRPKR 465 V +D+AAALA+ +G L++ D +R +RR RP R Sbjct 428 VVESDVAAALAIVAQGDTPLLLSADDLRPPRVERERRDDRPGRDGDDRGERRARPARGS- 486 Query 466 RPDLTTYRVAVGKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATL 525 ++ TYR+ VG+RH++ P IVGA+ANEGG R DFG I I PDFSLVELPA L Sbjct 487 -GNMATYRIDVGRRHRVEPRQIVGALANEGGFSREDFGHIDIRPDFSLVELPAATSDDQL 545 Query 526 KKLAQTRISGVLIDLRPYR-PPDAARRHNGGKPRRK 560 +KLA T I+G ID+RP R P AA R G P R+ Sbjct 546 RKLANTLINGRPIDIRPDRGGPRAAER--GAAPERR 579 >gi|62390044|ref|YP_225446.1| superfamily II DNA/RNA helicase [Corynebacterium glutamicum ATCC 13032] gi|41325380|emb|CAF19860.1| Superfamily II DNA and RNA helicase [Corynebacterium glutamicum ATCC 13032] Length=732 Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/579 (59%), Positives = 425/579 (74%), Gaps = 33/579 (5%) Query 5 EYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKT 64 E S + + F L + RVL A+ VGYE+P+ IQA TIP LM G DVVGLAQTGTGKT Sbjct 94 ESSSTEAKSGFDALGLPERVLDAVRKVGYETPSPIQAQTIPILMEGQDVVGLAQTGTGKT 153 Query 65 AAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAV 124 AAFA+P+L++ID + + PQALVL PTRE ALQVA++F + ++ LNVLPIYGG +Y + Sbjct 154 AAFALPILARIDKSVRSPQALVLAPTREQALQVADSFQSFADHVGGLNVLPIYGGQAYGI 213 Query 125 QLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSET 184 QL+GLRRGA +VVGTPGR+IDHLE+ +LD+S + FLVLDEADEML MGF +DVERIL +T Sbjct 214 QLSGLRRGAHIVVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLNMGFQEDVERILEDT 273 Query 185 PEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALT 242 P+ KQVALFSATMP IR+LS +YL++P E+T K++T NI+Q ++ VA KMDALT Sbjct 274 PDEKQVALFSATMPNGIRRLSKQYLNNPAEITVKSETRTNTNITQRFLNVAHRNKMDALT 333 Query 243 RVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDID 302 R+LEV FEAMI+FVRTK TEE+AEKLRARGFSAAAI+GD+ QAQRERT+ L+DG +D Sbjct 334 RILEVTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLD 393 Query 303 ILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLL 362 ILVATDVAARGLDVERISHVLN+DIP+DTESYVHRIGRTGRAGR+G A++FV+PRE +L Sbjct 394 ILVATDVAARGLDVERISHVLNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRML 453 Query 363 KAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVP 422 ++IE+AT L E +LPTV+ VN R KFADSIT +L ++LFR LV+EY + +DVP Sbjct 454 RSIERATNAPLHEMELPTVDQVNDFRKVKFADSITKSLEDKQMDLFRTLVKEYSQANDVP 513 Query 423 MADIAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQR-------------------- 462 + DIAAALA Q + G+ FL+ PP R D+RRDR Sbjct 514 LEDIAAALATQAQSGD-FLLKELPPERRERNDRRRDRDFDDRGGRGRDRDRGDRGDRGSR 572 Query 463 -PKRRPDLTTYRVAVGKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLP 521 + +L TYR+AVGKR I PGAIVGA+ANEGGL+ DFG+I I D +LVELP LP Sbjct 573 FDRDDENLATYRLAVGKRQHIRPGAIVGALANEGGLNSKDFGRITIAADHTLVELPKDLP 632 Query 522 RATLKKLAQTRISGVLIDLRPYRPPDAARRHNGGKPRRK 560 ++ L L TRISG LI++ R +GG+P R+ Sbjct 633 QSVLDNLRDTRISGQLINI---------ERDSGGRPPRR 662 >gi|25027815|ref|NP_737869.1| putative cold shock DEAD-box protein A [Corynebacterium efficiens YS-314] gi|259506205|ref|ZP_05749107.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314] gi|23493098|dbj|BAC18069.1| putative cold shock DEAD-box protein A [Corynebacterium efficiens YS-314] gi|259166182|gb|EEW50736.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314] Length=736 Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/575 (59%), Positives = 423/575 (74%), Gaps = 28/575 (4%) Query 5 EYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKT 64 E S ++ F L + +VL A+ VG+E+P+ IQA TIP LM G DVVGLAQTGTGKT Sbjct 97 ESSSTEASTGFDALGLPQQVLDAVRKVGFETPSPIQAQTIPVLMDGHDVVGLAQTGTGKT 156 Query 65 AAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAV 124 AAFA+P+LS+ID + + PQALVL PTRELALQVA++F + +L LNVLPIYGG +Y + Sbjct 157 AAFALPVLSRIDKSVRSPQALVLAPTRELALQVADSFQSFADHLGGLNVLPIYGGQAYGI 216 Query 125 QLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSET 184 QL+GLRRGA +VVGTPGR+IDHLE+ +LD+S + FLVLDEADEML MGF +DVERIL++T Sbjct 217 QLSGLRRGAHIVVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLNMGFQEDVERILADT 276 Query 185 PEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALT 242 P+ KQVALFSATMP IR+LS +YL++P E++ K++T A NI+Q ++ VA KMDALT Sbjct 277 PDDKQVALFSATMPNGIRRLSKQYLNNPQEISVKSETRTATNITQRFLSVAHRNKMDALT 336 Query 243 RVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDID 302 R+LEV FEAMI+FVRTK TEE+AEKLRARGFSAAAI+GD+ QAQRERT+ L+DG +D Sbjct 337 RILEVTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLD 396 Query 303 ILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLL 362 ILVATDVAARGLDVERISHVLNYDIP+DTESYVHRIGRTGRAGR+G A++FV+PRE +L Sbjct 397 ILVATDVAARGLDVERISHVLNYDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRML 456 Query 363 KAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVP 422 ++IE+AT L E +LPTV++VN R KFADSIT AL P + LFR L++EY ++DVP Sbjct 457 RSIERATNAPLVEMELPTVDEVNEYRKVKFADSITEALENPQVALFRTLIKEYAEKNDVP 516 Query 423 MADIAAALAVQCRGGEAFLMAPDPP----------------LSRRNRDQRRDRPQRPKR- 465 + D+AAALA Q + G F + R DRP R R Sbjct 517 LEDVAAALATQAQAGNDFFLTEQAADRDRGRGDRRRDRDFDDRGGRGRDRGDRPSRFDRD 576 Query 466 RPDLTTYRVAVGKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATL 525 +L TYR+AVGKR + PGAIVGA+ANEGGL+ DFG+I I D +LVELP LP++ L Sbjct 577 DANLATYRIAVGKRQHVRPGAIVGALANEGGLNSKDFGRITIAADHTLVELPKDLPQSVL 636 Query 526 KKLAQTRISGVLIDLRPYRPPDAARRHNGGKPRRK 560 L TRISG LI++ R +GG+P R+ Sbjct 637 DNLRDTRISGQLINI---------ERDSGGRPPRR 662 >gi|213964614|ref|ZP_03392814.1| cold-shock deAd box protein a [Corynebacterium amycolatum SK46] gi|213952807|gb|EEB64189.1| cold-shock deAd box protein a [Corynebacterium amycolatum SK46] Length=702 Score = 638 bits (1645), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/551 (61%), Positives = 415/551 (76%), Gaps = 26/551 (4%) Query 15 FADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSK 74 F +L++ ++ A+ VG+E+P+ IQAATIP LM+G DVVGLAQTGTGKTAAFA+P+L++ Sbjct 63 FDELELPDDIVNAVRKVGFETPSPIQAATIPTLMSGRDVVGLAQTGTGKTAAFALPILAR 122 Query 75 IDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGAQ 134 ID + + PQALVL PTRELALQVA++F + +L ++ VLPIYGG SY VQL+GLRRGAQ Sbjct 123 IDRSVRAPQALVLAPTRELALQVADSFQSFADHLGKIQVLPIYGGQSYGVQLSGLRRGAQ 182 Query 135 VVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALFS 194 ++VGTPGR+IDHLE+ +LD+S + FLVLDEADEML MGF +DVERIL++TP+ KQVALFS Sbjct 183 IIVGTPGRVIDHLEKGSLDISDLRFLVLDEADEMLQMGFQEDVERILADTPDDKQVALFS 242 Query 195 ATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLEVEPFEA 252 ATMP +IR+LS +YL +P E+T K++T A+NI Q ++ V+ K+DALTR+LEVE FEA Sbjct 243 ATMPASIRRLSKQYLTEPEEITVKSQTRTADNIRQRFLMVSHRNKLDALTRILEVEEFEA 302 Query 253 MIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAAR 312 MI+FVRTK TEE+AEKLRARGFSAAAI+GD+PQ RERTI L+DG +DILVATDVAAR Sbjct 303 MIMFVRTKHETEELAEKLRARGFSAAAINGDIPQTLRERTIDQLKDGRLDILVATDVAAR 362 Query 313 GLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKATRQT 372 GLDV+RISHV+NYDIPHDTESYVHRIGRTGRAGRSG AL+FV+PRE LL++IE+AT+ Sbjct 363 GLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGEALLFVTPREGRLLRSIERATKSQ 422 Query 373 LTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMADIAAALAV 432 L E +LPTV++VN R KFAD +T AL + +FR L+EEY EHD P+ DIAAA+A Sbjct 423 LHEMKLPTVDEVNDSRKQKFADDLTEALADSQVPVFRELIEEYAEEHDTPLVDIAAAIAA 482 Query 433 QCRGGEAFLMAPDPP----------------------LSRRNRDQRRDRPQRPKRRPDLT 470 Q + G+ FLM +PP SR R Q + R Sbjct 483 QAQSGD-FLMK-EPPRGRRHDRDRDRFDRDRNRGRDGRSRGERGQGKRADLVEFDREGTA 540 Query 471 TYRVAVGKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQ 530 TYR++VG+R + PGAIVGAIANEGGL DFG I I D +LVELPA LP+ + L+ Sbjct 541 TYRISVGRRQHVRPGAIVGAIANEGGLSSKDFGHIDIRGDHTLVELPANLPQEVINNLSD 600 Query 531 TRISGVLIDLR 541 TRISG LI L+ Sbjct 601 TRISGQLIGLK 611 Lambda K H 0.320 0.135 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1258839720204 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40