BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1255c
Length=202
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608395|ref|NP_215771.1| transcriptional regulatory protein ... 401 3e-110
gi|253799700|ref|YP_003032701.1| transcriptional regulator [Myco... 400 5e-110
gi|289446846|ref|ZP_06436590.1| transcriptional regulator [Mycob... 399 1e-109
gi|289749798|ref|ZP_06509176.1| transcriptional regulator [Mycob... 399 1e-109
gi|254819465|ref|ZP_05224466.1| transcriptional regulator, TetR ... 297 7e-79
gi|118619595|ref|YP_907927.1| transcriptional regulatory protein... 297 8e-79
gi|342862132|ref|ZP_08718775.1| TetR family transcriptional regu... 291 3e-77
gi|240172648|ref|ZP_04751307.1| transcriptional regulatory prote... 288 3e-76
gi|41408617|ref|NP_961453.1| hypothetical protein MAP2519 [Mycob... 287 8e-76
gi|296170157|ref|ZP_06851754.1| TetR family transcriptional regu... 285 3e-75
gi|120405418|ref|YP_955247.1| TetR family transcriptional regula... 240 8e-62
gi|145222816|ref|YP_001133494.1| TetR family transcriptional reg... 236 2e-60
gi|333989862|ref|YP_004522476.1| transcriptional regulator [Myco... 228 4e-58
gi|118470212|ref|YP_889289.1| TetR family transcriptional regula... 227 9e-58
gi|108800927|ref|YP_641124.1| TetR family transcriptional regula... 213 9e-54
gi|229494574|ref|ZP_04388337.1| transcriptional regulator, TetR ... 181 7e-44
gi|226304633|ref|YP_002764591.1| TetR family transcriptional reg... 177 8e-43
gi|325676006|ref|ZP_08155689.1| TetR family transcriptional regu... 176 1e-42
gi|312140384|ref|YP_004007720.1| tetr family transcriptional reg... 176 2e-42
gi|226365192|ref|YP_002782975.1| TetR family transcriptional reg... 171 4e-41
gi|111022683|ref|YP_705655.1| transcriptional regulator [Rhodoco... 167 5e-40
gi|333918654|ref|YP_004492235.1| putative TetR family transcript... 163 2e-38
gi|262200983|ref|YP_003272191.1| TetR family transcriptional reg... 148 4e-34
gi|296179475|gb|ADG96481.1| TetR transcriptional regulator [Gord... 143 1e-32
gi|296141453|ref|YP_003648696.1| TetR family transcriptional reg... 141 5e-32
gi|326329199|ref|ZP_08195526.1| transcriptional regulator, TetR ... 135 3e-30
gi|326381887|ref|ZP_08203580.1| TetR family transcriptional regu... 125 3e-27
gi|31792448|ref|NP_854941.1| hypothetical protein Mb1287c [Mycob... 106 2e-21
gi|325674834|ref|ZP_08154521.1| TetR family transcriptional regu... 89.7 2e-16
gi|169629026|ref|YP_001702675.1| TetR family transcriptional reg... 85.1 6e-15
gi|240172002|ref|ZP_04750661.1| transcriptional regulatory prote... 84.3 9e-15
gi|183982663|ref|YP_001850954.1| transcriptional regulatory prot... 80.1 2e-13
gi|118618501|ref|YP_906833.1| transcriptional regulatory protein... 78.2 6e-13
gi|183982661|ref|YP_001850952.1| transcriptional regulatory prot... 77.4 1e-12
gi|120404739|ref|YP_954568.1| TetR family transcriptional regula... 76.6 2e-12
gi|340626788|ref|YP_004745240.1| putative transcriptional regula... 75.5 5e-12
gi|229488893|ref|ZP_04382759.1| putative transcriptional regulat... 73.6 2e-11
gi|15608914|ref|NP_216292.1| transcriptional regulatory protein ... 73.2 2e-11
gi|54026327|ref|YP_120569.1| putative transcriptional regulator ... 70.9 1e-10
gi|226308419|ref|YP_002768379.1| TetR family transcriptional reg... 69.3 3e-10
gi|145223611|ref|YP_001134289.1| TetR family transcriptional reg... 68.9 4e-10
gi|145224059|ref|YP_001134737.1| TetR family transcriptional reg... 68.9 4e-10
gi|226361809|ref|YP_002779587.1| hypothetical protein ROP_23950 ... 68.9 4e-10
gi|108800189|ref|YP_640386.1| TetR family transcriptional regula... 68.2 6e-10
gi|339294717|gb|AEJ46828.1| transcriptional regulatory protein [... 67.0 1e-09
gi|326383820|ref|ZP_08205505.1| TetR family transcriptional regu... 66.6 2e-09
gi|326331023|ref|ZP_08197322.1| putative protein TPRXL [Nocardio... 66.6 2e-09
gi|183983158|ref|YP_001851449.1| transcriptional regulatory prot... 66.2 3e-09
gi|145225202|ref|YP_001135880.1| TetR family transcriptional reg... 66.2 3e-09
gi|343927225|ref|ZP_08766703.1| putative TetR family transcripti... 65.9 4e-09
>gi|15608395|ref|NP_215771.1| transcriptional regulatory protein [Mycobacterium tuberculosis
H37Rv]
gi|15840701|ref|NP_335738.1| TetR family transcriptional regulator [Mycobacterium tuberculosis
CDC1551]
gi|148661042|ref|YP_001282565.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis
H37Ra]
62 more sequence titles
Length=202
Score = 401 bits (1030), Expect = 3e-110, Method: Compositional matrix adjust.
Identities = 202/202 (100%), Positives = 202/202 (100%), Gaps = 0/202 (0%)
Query 1 MAGTDWLSARRTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREA 60
MAGTDWLSARRTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREA
Sbjct 1 MAGTDWLSARRTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREA 60
Query 61 LRTAYVHRETRRLGREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIG 120
LRTAYVHRETRRLGREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIG
Sbjct 61 LRTAYVHRETRRLGREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIG 120
Query 121 GEMAGRSEVIAALAAAFLNSLGPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAMIAE 180
GEMAGRSEVIAALAAAFLNSLGPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAMIAE
Sbjct 121 GEMAGRSEVIAALAAAFLNSLGPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAMIAE 180
Query 181 FVVPIVTPASAAARKAGHPGPE 202
FVVPIVTPASAAARKAGHPGPE
Sbjct 181 FVVPIVTPASAAARKAGHPGPE 202
>gi|253799700|ref|YP_003032701.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435]
gi|289554956|ref|ZP_06444166.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605]
gi|297633804|ref|ZP_06951584.1| TetR family transcriptional regulator [Mycobacterium tuberculosis
KZN 4207]
gi|297730790|ref|ZP_06959908.1| TetR family transcriptional regulator [Mycobacterium tuberculosis
KZN R506]
gi|313658122|ref|ZP_07815002.1| TetR family transcriptional regulator [Mycobacterium tuberculosis
KZN V2475]
gi|253321203|gb|ACT25806.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435]
gi|289439588|gb|EFD22081.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605]
gi|328459446|gb|AEB04869.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207]
Length=202
Score = 400 bits (1029), Expect = 5e-110, Method: Compositional matrix adjust.
Identities = 201/202 (99%), Positives = 202/202 (100%), Gaps = 0/202 (0%)
Query 1 MAGTDWLSARRTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREA 60
MAGTDWLSARRTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREA
Sbjct 1 MAGTDWLSARRTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREA 60
Query 61 LRTAYVHRETRRLGREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIG 120
LRTAYVHRETRRLGREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPP+G
Sbjct 61 LRTAYVHRETRRLGREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPVG 120
Query 121 GEMAGRSEVIAALAAAFLNSLGPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAMIAE 180
GEMAGRSEVIAALAAAFLNSLGPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAMIAE
Sbjct 121 GEMAGRSEVIAALAAAFLNSLGPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAMIAE 180
Query 181 FVVPIVTPASAAARKAGHPGPE 202
FVVPIVTPASAAARKAGHPGPE
Sbjct 181 FVVPIVTPASAAARKAGHPGPE 202
>gi|289446846|ref|ZP_06436590.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
gi|289419804|gb|EFD17005.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
Length=202
Score = 399 bits (1025), Expect = 1e-109, Method: Compositional matrix adjust.
Identities = 201/202 (99%), Positives = 201/202 (99%), Gaps = 0/202 (0%)
Query 1 MAGTDWLSARRTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREA 60
MAGTDWLSARRTELAADRILDAAERLFTQRDPASIGMNEI KAAGCSRATLYRYFDSREA
Sbjct 1 MAGTDWLSARRTELAADRILDAAERLFTQRDPASIGMNEIPKAAGCSRATLYRYFDSREA 60
Query 61 LRTAYVHRETRRLGREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIG 120
LRTAYVHRETRRLGREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIG
Sbjct 61 LRTAYVHRETRRLGREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIG 120
Query 121 GEMAGRSEVIAALAAAFLNSLGPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAMIAE 180
GEMAGRSEVIAALAAAFLNSLGPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAMIAE
Sbjct 121 GEMAGRSEVIAALAAAFLNSLGPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAMIAE 180
Query 181 FVVPIVTPASAAARKAGHPGPE 202
FVVPIVTPASAAARKAGHPGPE
Sbjct 181 FVVPIVTPASAAARKAGHPGPE 202
>gi|289749798|ref|ZP_06509176.1| transcriptional regulator [Mycobacterium tuberculosis T92]
gi|289690385|gb|EFD57814.1| transcriptional regulator [Mycobacterium tuberculosis T92]
Length=202
Score = 399 bits (1024), Expect = 1e-109, Method: Compositional matrix adjust.
Identities = 201/202 (99%), Positives = 201/202 (99%), Gaps = 0/202 (0%)
Query 1 MAGTDWLSARRTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREA 60
MAGTDWLSARRTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREA
Sbjct 1 MAGTDWLSARRTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREA 60
Query 61 LRTAYVHRETRRLGREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIG 120
LRTAYVHRETRRL REIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIG
Sbjct 61 LRTAYVHRETRRLSREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIG 120
Query 121 GEMAGRSEVIAALAAAFLNSLGPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAMIAE 180
GEMAGRSEVIAALAAAFLNSLGPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAMIAE
Sbjct 121 GEMAGRSEVIAALAAAFLNSLGPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAMIAE 180
Query 181 FVVPIVTPASAAARKAGHPGPE 202
FVVPIVTPASAAARKAGHPGPE
Sbjct 181 FVVPIVTPASAAARKAGHPGPE 202
>gi|254819465|ref|ZP_05224466.1| transcriptional regulator, TetR family protein [Mycobacterium
intracellulare ATCC 13950]
Length=193
Score = 297 bits (760), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 143/191 (75%), Positives = 165/191 (87%), Gaps = 0/191 (0%)
Query 1 MAGTDWLSARRTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREA 60
M G DWLSARR+E AADRILDAAE L+TQRD SIGMNEIA+AAGCSRATLYRYF++REA
Sbjct 1 MPGNDWLSARRSEAAADRILDAAEELYTQRDSDSIGMNEIARAAGCSRATLYRYFENREA 60
Query 61 LRTAYVHRETRRLGREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIG 120
LRTAYVHRET RLGR I+ + + +P ERL+ SI TL+MVR++PALA+WF TTRPP+G
Sbjct 61 LRTAYVHRETHRLGRAILARTGGIEDPHERLVASILVTLQMVRESPALASWFATTRPPVG 120
Query 121 GEMAGRSEVIAALAAAFLNSLGPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAMIAE 180
GE+AG+S+VIAALAAAFLNSLG DDP VERRARWVVR++ S+L+FPG DEADERAMI E
Sbjct 121 GELAGQSDVIAALAAAFLNSLGADDPAVVERRARWVVRVIVSMLLFPGHDEADERAMIEE 180
Query 181 FVVPIVTPASA 191
FVVPIV P SA
Sbjct 181 FVVPIVAPVSA 191
>gi|118619595|ref|YP_907927.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
gi|183984156|ref|YP_001852447.1| transcriptional regulatory protein [Mycobacterium marinum M]
gi|118571705|gb|ABL06456.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
gi|183177482|gb|ACC42592.1| transcriptional regulatory protein [Mycobacterium marinum M]
Length=193
Score = 297 bits (760), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 143/188 (77%), Positives = 165/188 (88%), Gaps = 0/188 (0%)
Query 1 MAGTDWLSARRTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREA 60
M TDWL+A R+E+AADRILDAAERL+T+ DPASIGMNEIA+AAGCSRATLYRYF+SREA
Sbjct 1 MGRTDWLAAHRSEVAADRILDAAERLYTEHDPASIGMNEIARAAGCSRATLYRYFESREA 60
Query 61 LRTAYVHRETRRLGREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIG 120
LRTAYVHRET RLGREIM +I D+ +P ++L+ SIT TLRMVR PALAAWF +TRPPIG
Sbjct 61 LRTAYVHRETLRLGREIMQQIGDIDDPRDQLITSITATLRMVRQRPALAAWFASTRPPIG 120
Query 121 GEMAGRSEVIAALAAAFLNSLGPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAMIAE 180
GE+AG+SEVIA LAAAFL SLGP+ P VERRARW VR++ SLLMFPG+DEADERAM+ E
Sbjct 121 GELAGQSEVIAGLAAAFLQSLGPEAPAAVERRARWTVRVIVSLLMFPGQDEADERAMLEE 180
Query 181 FVVPIVTP 188
FV P+VTP
Sbjct 181 FVAPVVTP 188
>gi|342862132|ref|ZP_08718775.1| TetR family transcriptional regulator [Mycobacterium colombiense
CECT 3035]
gi|342130436|gb|EGT83751.1| TetR family transcriptional regulator [Mycobacterium colombiense
CECT 3035]
Length=193
Score = 291 bits (746), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 139/191 (73%), Positives = 162/191 (85%), Gaps = 0/191 (0%)
Query 1 MAGTDWLSARRTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREA 60
M G DWL RTE AADRILDAAERL+TQRD SIGMNEIA+AAGCSRATLYRYF++R+A
Sbjct 1 MPGNDWLGTHRTEAAADRILDAAERLYTQRDSGSIGMNEIARAAGCSRATLYRYFENRDA 60
Query 61 LRTAYVHRETRRLGREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIG 120
LRTAYVHRET RLGREI+ + D+ +P ERL+ S+ TLRMVR++PALA+WF TTRPP+G
Sbjct 61 LRTAYVHRETHRLGREIIARTGDIEDPRERLVASVLVTLRMVRESPALASWFATTRPPVG 120
Query 121 GEMAGRSEVIAALAAAFLNSLGPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAMIAE 180
GE+AG S+VIAALA AFL+SLGPDDP +ERR RW+VR++ SLL PGRDE +ERAMI E
Sbjct 121 GELAGHSDVIAALAVAFLHSLGPDDPAVIERRGRWMVRVIVSLLTHPGRDEDEERAMIEE 180
Query 181 FVVPIVTPASA 191
FVVPIVTP SA
Sbjct 181 FVVPIVTPVSA 191
>gi|240172648|ref|ZP_04751307.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC
12478]
Length=193
Score = 288 bits (737), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 143/181 (80%), Positives = 159/181 (88%), Gaps = 0/181 (0%)
Query 1 MAGTDWLSARRTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREA 60
MAGTDWL+ARRTE+AADRILDAA +L+T RDPASIGMNEIA+AAGCSRATLYRYFDSREA
Sbjct 1 MAGTDWLAARRTEVAADRILDAAAQLYTVRDPASIGMNEIARAAGCSRATLYRYFDSREA 60
Query 61 LRTAYVHRETRRLGREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIG 120
LRTAYVHRETRRLGREIM +I+ V +P ERL+ SI TLRMVR++PALAAWF TRPPIG
Sbjct 61 LRTAYVHRETRRLGREIMQQISGVEDPQERLVASIAATLRMVRESPALAAWFAATRPPIG 120
Query 121 GEMAGRSEVIAALAAAFLNSLGPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAMIAE 180
GE+AG+SEVIAALAAAFL SLG VERRARW VR++ SLL FPGRDEADERAMI +
Sbjct 121 GELAGQSEVIAALAAAFLQSLGSVGGAAVERRARWAVRVIISLLTFPGRDEADERAMIED 180
Query 181 F 181
F
Sbjct 181 F 181
>gi|41408617|ref|NP_961453.1| hypothetical protein MAP2519 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118462230|ref|YP_880645.1| TetR family transcriptional regulator [Mycobacterium avium 104]
gi|254774282|ref|ZP_05215798.1| transcriptional regulator, TetR family protein [Mycobacterium
avium subsp. avium ATCC 25291]
gi|41396975|gb|AAS04836.1| hypothetical protein MAP_2519 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118163517|gb|ABK64414.1| transcriptional regulator, TetR family protein [Mycobacterium
avium 104]
gi|336458596|gb|EGO37563.1| transcriptional regulator [Mycobacterium avium subsp. paratuberculosis
S397]
Length=197
Score = 287 bits (734), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 141/188 (75%), Positives = 157/188 (84%), Gaps = 0/188 (0%)
Query 4 TDWLSARRTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREALRT 63
TDWLS R E A DRILDAA+ L+TQRD SIGMNEIA+AAGCSRATLYRYF++REALRT
Sbjct 8 TDWLSGHRNEAAVDRILDAAQELYTQRDSESIGMNEIARAAGCSRATLYRYFENREALRT 67
Query 64 AYVHRETRRLGREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIGGEM 123
AYVHRE RLGR IM +I + EP +RL SITTTLRMVR NPALA+WF TRPPI GE+
Sbjct 68 AYVHREANRLGRAIMEQIDGIDEPRQRLTASITTTLRMVRGNPALASWFAVTRPPIAGEL 127
Query 124 AGRSEVIAALAAAFLNSLGPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAMIAEFVV 183
A SEVI ALAAAF+ SLGP++P VERRARWVVR++TSLL+FPG DEADERAMI EFVV
Sbjct 128 AEHSEVITALAAAFVGSLGPEEPAVVERRARWVVRVITSLLLFPGHDEADERAMIEEFVV 187
Query 184 PIVTPASA 191
PIVTP SA
Sbjct 188 PIVTPVSA 195
>gi|296170157|ref|ZP_06851754.1| TetR family transcriptional regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295895183|gb|EFG74898.1| TetR family transcriptional regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=192
Score = 285 bits (728), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 143/188 (77%), Positives = 160/188 (86%), Gaps = 0/188 (0%)
Query 4 TDWLSARRTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREALRT 63
TDWL A RTE AADRILDAAERL+T+RD ASIGMNEIA+AAGCSRATLYRYF++REALRT
Sbjct 3 TDWLGAHRTEAAADRILDAAERLYTERDHASIGMNEIARAAGCSRATLYRYFENREALRT 62
Query 64 AYVHRETRRLGREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIGGEM 123
AYVHRETRRL R I +I + + ERLL SIT TLRMVR + ALA+WF TRPPIG E+
Sbjct 63 AYVHRETRRLSRAIKEEIGGIDDARERLLASITATLRMVRGSRALASWFAITRPPIGAEV 122
Query 124 AGRSEVIAALAAAFLNSLGPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAMIAEFVV 183
AG+SEVI ALAAAF+ SLGP+DP VERRARWVVR++TSLL FPGRD+ADERAMI EFV
Sbjct 123 AGQSEVITALAAAFVGSLGPEDPAVVERRARWVVRVITSLLQFPGRDDADERAMIEEFVA 182
Query 184 PIVTPASA 191
PIVTP SA
Sbjct 183 PIVTPVSA 190
>gi|120405418|ref|YP_955247.1| TetR family transcriptional regulator [Mycobacterium vanbaalenii
PYR-1]
gi|119958236|gb|ABM15241.1| transcriptional regulator, TetR family [Mycobacterium vanbaalenii
PYR-1]
Length=193
Score = 240 bits (613), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 122/194 (63%), Positives = 149/194 (77%), Gaps = 1/194 (0%)
Query 1 MAGTDWLSARRTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREA 60
MAG DWL+ARRTE+AADRILDAA LF + A++GM+EIA AAGCSRATLYRYF++REA
Sbjct 1 MAG-DWLAARRTEVAADRILDAAGELFAAQPAATVGMHEIASAAGCSRATLYRYFENREA 59
Query 61 LRTAYVHRETRRLGREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIG 120
L TAYVHRE RL E+ +I + +P ERL+ + +LR VR++PALA+WF TT+ PIG
Sbjct 60 LYTAYVHREAYRLYVEMTDQITSIADPRERLIEGMLASLRNVRESPALASWFATTQRPIG 119
Query 121 GEMAGRSEVIAALAAAFLNSLGPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAMIAE 180
EMA SEVI AL AF+ SLGPDD V RARW+VR++TSL++FPG DE DERAM+ E
Sbjct 120 AEMAEESEVIKALTEAFVISLGPDDAELVAHRARWLVRVMTSLMLFPGHDETDERAMLEE 179
Query 181 FVVPIVTPASAAAR 194
FVVP V P+ AAR
Sbjct 180 FVVPTVLPSRHAAR 193
>gi|145222816|ref|YP_001133494.1| TetR family transcriptional regulator [Mycobacterium gilvum PYR-GCK]
gi|315443283|ref|YP_004076162.1| TetR family transcriptional regulator [Mycobacterium sp. Spyr1]
gi|145215302|gb|ABP44706.1| transcriptional regulator, TetR family [Mycobacterium gilvum
PYR-GCK]
gi|315261586|gb|ADT98327.1| transcriptional regulator, TetR family [Mycobacterium sp. Spyr1]
Length=206
Score = 236 bits (601), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 120/198 (61%), Positives = 151/198 (77%), Gaps = 11/198 (5%)
Query 1 MAGTDWLSARRTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREA 60
MAG DWL+ARRTE+AADRILDAA LF + A++GM+EIA AAGCSRATLYRYF++REA
Sbjct 1 MAG-DWLAARRTEVAADRILDAAGELFAAQSAATVGMHEIAAAAGCSRATLYRYFENREA 59
Query 61 LRTAYVHRETRRLGREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIG 120
L TAYVHRE+ RL RE+ +I +P ERL+ + ++LR VR++PAL++WF TT+ PIG
Sbjct 60 LYTAYVHRESYRLYREMTEQIMSFDDPRERLIEGMLSSLRNVRESPALSSWFATTQRPIG 119
Query 121 GEMAGRSEVIAALAAAFLNSLGPDDPT----------TVERRARWVVRMLTSLLMFPGRD 170
EMA +SEVI AL AF+ SLGPDD +V R+RW+VR++TSL++FPG D
Sbjct 120 AEMAEQSEVIKALTEAFVISLGPDDADARASGATGEGSVAHRSRWLVRVMTSLMLFPGHD 179
Query 171 EADERAMIAEFVVPIVTP 188
EADERAM+ EFVVPIV P
Sbjct 180 EADERAMLEEFVVPIVLP 197
>gi|333989862|ref|YP_004522476.1| transcriptional regulator [Mycobacterium sp. JDM601]
gi|333485830|gb|AEF35222.1| transcriptional regulatory protein [Mycobacterium sp. JDM601]
Length=200
Score = 228 bits (581), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 113/186 (61%), Positives = 140/186 (76%), Gaps = 1/186 (0%)
Query 1 MAGTDWLSARRTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREA 60
MAG WL+ +R ELAA++ILDAAE+LF DP S+GMNEIA+AAGCSRATLYRYF+SR+A
Sbjct 1 MAGRSWLADQRGELAAEKILDAAEKLFADHDPGSVGMNEIARAAGCSRATLYRYFESRDA 60
Query 61 LRTAYVHRETRRLGREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIG 120
L TAYVHR L E+ ++ V +PA+RL+ IT +L +VR NPALA+WF T PPIG
Sbjct 61 LHTAYVHRWANALYHELTERLDGVDDPAQRLITGITESLALVRGNPALASWFAETGPPIG 120
Query 121 GEMAGRSEVIAALAAAFLNSLGPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAMIAE 180
MA RS+VI + FL+ LG D T E+RARWVVR++TSLL FPGRD DE+AM+A+
Sbjct 121 TAMAERSDVITVMVTTFLSGLGGKDAET-EQRARWVVRVMTSLLSFPGRDADDEKAMLAQ 179
Query 181 FVVPIV 186
FVVP V
Sbjct 180 FVVPAV 185
>gi|118470212|ref|YP_889289.1| TetR family transcriptional regulator [Mycobacterium smegmatis
str. MC2 155]
gi|118171499|gb|ABK72395.1| transcriptional regulator, TetR family protein [Mycobacterium
smegmatis str. MC2 155]
Length=195
Score = 227 bits (578), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 113/192 (59%), Positives = 145/192 (76%), Gaps = 4/192 (2%)
Query 5 DWLSARRTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREALRTA 64
DWL+ RR E+AAD ILDAA+ LF ++D A++GM+EIA AAGCSRATLYRYF++R+AL TA
Sbjct 3 DWLAGRRGEVAADLILDAADALFARKDAATVGMHEIAAAAGCSRATLYRYFENRDALYTA 62
Query 65 YVHRETRRLGREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIGGEMA 124
YVHRE RR+ +E+ ++ + +PAERL+ + T LR VR +PAL++WF T+ PIGGEMA
Sbjct 63 YVHREARRVYQEVSDQVVGIGDPAERLMEGVITALRAVRCSPALSSWFAATQRPIGGEMA 122
Query 125 GRSEVIAALAAAFLNSLGP----DDPTTVERRARWVVRMLTSLLMFPGRDEADERAMIAE 180
SEVI AL F+ SLG DD V RRARW+VR++ SLL+FPG DEADER M+A+
Sbjct 123 EHSEVIRALVEGFVRSLGSPTDADDDAAVGRRARWLVRVMVSLLVFPGVDEADERTMLAD 182
Query 181 FVVPIVTPASAA 192
FV P+V A AA
Sbjct 183 FVAPLVVGAQAA 194
>gi|108800927|ref|YP_641124.1| TetR family transcriptional regulator [Mycobacterium sp. MCS]
gi|119870067|ref|YP_940019.1| TetR family transcriptional regulator [Mycobacterium sp. KMS]
gi|126436552|ref|YP_001072243.1| TetR family transcriptional regulator [Mycobacterium sp. JLS]
gi|108771346|gb|ABG10068.1| transcriptional regulator, TetR family [Mycobacterium sp. MCS]
gi|119696156|gb|ABL93229.1| transcriptional regulator, TetR family [Mycobacterium sp. KMS]
gi|126236352|gb|ABN99752.1| transcriptional regulator, TetR family [Mycobacterium sp. JLS]
Length=193
Score = 213 bits (543), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 109/180 (61%), Positives = 136/180 (76%), Gaps = 2/180 (1%)
Query 14 LAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREALRTAYVHRETRRL 73
+ ADRILDAAERLFT+RD AS+GM ++A+AAGCSRATLYR+FDSR+ L TAYVHRE +RL
Sbjct 1 MLADRILDAAERLFTERDAASVGMKDVAEAAGCSRATLYRHFDSRDTLHTAYVHREAQRL 60
Query 74 GREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIGGEMAGRSEVIAAL 133
R + + V +PAERL+ TLR VR+ PALA+WF T PIGGE A RSEV+ A+
Sbjct 61 YRTLTEHLDGVSDPAERLIEGTLLTLRSVREKPALASWFAPTARPIGGEWAERSEVVRAM 120
Query 134 AAAFLNSLGPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAMIAEFVVPIVTPASAAA 193
AF+ SLG D VERRARW+VR+LTSLL+FPG DE +ERAM++EF+VP + +A
Sbjct 121 VEAFVRSLG--DSGDVERRARWLVRVLTSLLLFPGGDEGEERAMLSEFLVPAMIGVAAGG 178
>gi|229494574|ref|ZP_04388337.1| transcriptional regulator, TetR family protein [Rhodococcus erythropolis
SK121]
gi|229318936|gb|EEN84794.1| transcriptional regulator, TetR family protein [Rhodococcus erythropolis
SK121]
Length=187
Score = 181 bits (458), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 92/188 (49%), Positives = 120/188 (64%), Gaps = 4/188 (2%)
Query 4 TDWLSARRTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREALRT 63
DWL R AA++ILD+A +LF + ++GM EIA AAGCSRATLYRYF++R+AL
Sbjct 3 NDWLGEGRALAAAEKILDSAAQLFVAKGVNAVGMAEIASAAGCSRATLYRYFENRQALHI 62
Query 64 AYVHRETRRLGREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIGGEM 123
A+VHRE RRLG I +A + +P+ERL +I T + VR P LAAWFT + GE+
Sbjct 63 AFVHREARRLGTSIAESVATIDDPSERLETAILTAVSAVRSTPTLAAWFTPGDASLAGEL 122
Query 124 AGRSEVIAALAAAFLNSLGPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAMIAEFVV 183
A S+VI L A L LG + RARW+VR++ SLLM PG DE DER ++ EFVV
Sbjct 123 ANSSDVINGLGVAMLGELGAGTAS----RARWIVRVILSLLMVPGADENDERTLVREFVV 178
Query 184 PIVTPASA 191
++ A
Sbjct 179 ALLIAGRA 186
>gi|226304633|ref|YP_002764591.1| TetR family transcriptional regulator [Rhodococcus erythropolis
PR4]
gi|226183748|dbj|BAH31852.1| putative TetR family transcriptional regulator [Rhodococcus erythropolis
PR4]
Length=187
Score = 177 bits (449), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 88/184 (48%), Positives = 119/184 (65%), Gaps = 4/184 (2%)
Query 4 TDWLSARRTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREALRT 63
DWL R AA++ILD+A +LF ++ ++GM EIA AAGCSRATLYRYF++R+AL
Sbjct 3 NDWLGEGRALAAAEKILDSAAQLFVEKGVNAVGMAEIASAAGCSRATLYRYFENRQALHI 62
Query 64 AYVHRETRRLGREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIGGEM 123
A+VHRE RRLG I +A + +P+ERL ++ T + VR P LAAWFT + GE+
Sbjct 63 AFVHREARRLGTAIAESVATIDDPSERLETAMLTAVSAVRSTPTLAAWFTPGDASLAGEL 122
Query 124 AGRSEVIAALAAAFLNSLGPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAMIAEFVV 183
A S+VI L A L +G + RARW+VR++ SLLM PG DE DER ++ EFV
Sbjct 123 ANSSDVINGLGVAMLGEIGAGTAS----RARWIVRVILSLLMVPGADENDERTLVREFVA 178
Query 184 PIVT 187
++
Sbjct 179 ALLN 182
>gi|325676006|ref|ZP_08155689.1| TetR family transcriptional regulator [Rhodococcus equi ATCC
33707]
gi|325553244|gb|EGD22923.1| TetR family transcriptional regulator [Rhodococcus equi ATCC
33707]
Length=193
Score = 176 bits (447), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/184 (53%), Positives = 120/184 (66%), Gaps = 0/184 (0%)
Query 6 WLSARRTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREALRTAY 65
WLS R E AA RILDAA LF +R A+ GM +IAKAAGCSRATLYRYF++R AL A+
Sbjct 9 WLSDERVEAAAGRILDAAALLFVERGVATTGMADIAKAAGCSRATLYRYFENRGALHRAF 68
Query 66 VHRETRRLGREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIGGEMAG 125
VHRE RRLG I +A V +P ER+ ++ +R VR P LAAWF + E+A
Sbjct 69 VHREARRLGDRIARAVAAVADPRERVTEAVLMAVREVRSTPTLAAWFGLGDAGLASELAS 128
Query 126 RSEVIAALAAAFLNSLGPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAMIAEFVVPI 185
SEVI L AFL + D + RRARW VR + SLL PG D+ADERAM+ +F+VP+
Sbjct 129 TSEVIEVLGTAFLADVRHADDAEIARRARWSVRAIVSLLTVPGIDDADERAMVEQFLVPV 188
Query 186 VTPA 189
+ P+
Sbjct 189 LLPS 192
>gi|312140384|ref|YP_004007720.1| tetr family transcriptional regulator [Rhodococcus equi 103S]
gi|311889723|emb|CBH49040.1| putative TetR family transcriptional regulator [Rhodococcus equi
103S]
Length=193
Score = 176 bits (446), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/183 (53%), Positives = 119/183 (66%), Gaps = 0/183 (0%)
Query 6 WLSARRTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREALRTAY 65
WLS R E AA RILDAA LF +R A+ GM +IAKAAGCSRATLYRYF++R AL A+
Sbjct 9 WLSDERVEAAAGRILDAAALLFVERGVATTGMADIAKAAGCSRATLYRYFENRGALHRAF 68
Query 66 VHRETRRLGREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIGGEMAG 125
VHRE RRLG I +A V +P ER+ ++ +R VR P LAAWF + E+A
Sbjct 69 VHREARRLGDRIARAVAAVADPRERVTEAVLMAVREVRSTPTLAAWFGLGDAGLASELAS 128
Query 126 RSEVIAALAAAFLNSLGPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAMIAEFVVPI 185
SEVI L AFL + D + RRARW VR + SLL PG D+ADERAM+ +F+VP+
Sbjct 129 TSEVIEVLGTAFLADVRHADDAEIARRARWSVRAIVSLLTVPGIDDADERAMVEQFLVPV 188
Query 186 VTP 188
+ P
Sbjct 189 LLP 191
>gi|226365192|ref|YP_002782975.1| TetR family transcriptional regulator [Rhodococcus opacus B4]
gi|226243682|dbj|BAH54030.1| putative TetR family transcriptional regulator [Rhodococcus opacus
B4]
Length=197
Score = 171 bits (434), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 89/192 (47%), Positives = 126/192 (66%), Gaps = 1/192 (0%)
Query 5 DWLSARRTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREALRTA 64
DW+ R +AA+RILD A RL+ + A++GM ++A+AAGCSRATLYRYFDSR+AL+ A
Sbjct 4 DWMRDERPRVAAERILDVAARLYVENGIAAVGMADVARAAGCSRATLYRYFDSRQALQLA 63
Query 65 YVHRETRRLGREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIGGEMA 124
+VHRE RR+G + +++ P ++ ++ T +R+VR +P LAAWF + ++A
Sbjct 64 FVHREARRIGALVAEEVSGTGGPKGVIVDAMLTAIRLVRADPTLAAWFQLGDSGLAAQIA 123
Query 125 GRSEVIAALAAAFLNSLGPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAMIAEFVVP 184
SEVI +L AAFL G + RRARW+VR++ SLL PG D+ADERAM+ +FV P
Sbjct 124 HSSEVIESLGAAFLGRAGFTGEES-SRRARWLVRIIVSLLTVPGVDDADERAMLEQFVAP 182
Query 185 IVTPASAAARKA 196
+ A R A
Sbjct 183 ALAARDADERDA 194
>gi|111022683|ref|YP_705655.1| transcriptional regulator [Rhodococcus jostii RHA1]
gi|110822213|gb|ABG97497.1| possible transcriptional regulator [Rhodococcus jostii RHA1]
Length=192
Score = 167 bits (424), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 81/180 (45%), Positives = 121/180 (68%), Gaps = 1/180 (0%)
Query 5 DWLSARRTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREALRTA 64
DW+ R LAA+RILD A +L+ + A++GM E+A+AAGCSRATLYRYFDSR++L+ A
Sbjct 4 DWMRDERPRLAAERILDVAAQLYVENGIAAVGMAEVARAAGCSRATLYRYFDSRQSLQLA 63
Query 65 YVHRETRRLGREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIGGEMA 124
+VHRE RR+G + +++ +P + ++ ++ +R+VR +P LAAWF + ++A
Sbjct 64 FVHREARRIGALVAEEVSAAGDPKDVIVEAMLAAIRLVRADPTLAAWFQLGDSGLAAQIA 123
Query 125 GRSEVIAALAAAFLNSLGPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAMIAEFVVP 184
S+VI +L +AFL G T R+ARW+VR++ SLL PG D+ DER M+ +FV P
Sbjct 124 HSSDVIESLGSAFLGQAGFSGEET-SRKARWLVRIIVSLLTVPGVDDTDERTMLEQFVAP 182
>gi|333918654|ref|YP_004492235.1| putative TetR family transcriptional regulator [Amycolicicoccus
subflavus DQS3-9A1]
gi|333480875|gb|AEF39435.1| Putative TetR family transcriptional regulator [Amycolicicoccus
subflavus DQS3-9A1]
Length=189
Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 92/186 (50%), Positives = 126/186 (68%), Gaps = 2/186 (1%)
Query 1 MAGTDWLSARRTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREA 60
M+G DWL A R+ AA+RILDAA RLF +R A+ M +IA+ AGCSRATLYRYFD+R+A
Sbjct 1 MSG-DWLGAARSAHAAERILDAAARLFAERGVAATQMADIAQEAGCSRATLYRYFDNRQA 59
Query 61 LRTAYVHRETRRLGREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIG 120
+RTA+VHRE RR+G + +++++ +P ERL+ T LR VR +P L AWF + +
Sbjct 60 VRTAFVHREARRIGAVVADEVSEIADPGERLVEGTLTALRAVRSDPLLIAWFRSIDAVLS 119
Query 121 GEMAGRSEVIAALAAAFLNSLGPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAMIAE 180
E++ SEVI A+AAAFL + + ARW R++ SLL PGRD+ADER M+ +
Sbjct 120 AEISQTSEVIQAMAAAFLPAAIAPAEERAQ-LARWTTRIIVSLLTMPGRDDADERGMLEK 178
Query 181 FVVPIV 186
F+ P V
Sbjct 179 FLAPAV 184
>gi|262200983|ref|YP_003272191.1| TetR family transcriptional regulator [Gordonia bronchialis DSM
43247]
gi|262084330|gb|ACY20298.1| regulatory protein TetR [Gordonia bronchialis DSM 43247]
Length=192
Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 85/187 (46%), Positives = 111/187 (60%), Gaps = 1/187 (0%)
Query 1 MAGTDWLSARRTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREA 60
M+ TDWL+A R +LA+ RILD AE LFT R +S+ M ++A+A GCSRATLYRYF +
Sbjct 1 MSSTDWLAAERADLASRRILDRAEELFTARGVSSVTMRDVAQAVGCSRATLYRYFPGKTE 60
Query 61 LRTAYVHRETRRLGREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIG 120
L AYV R L EI V +PAERL+ ++ T L VR NPALAAWFT
Sbjct 61 LLAAYVDRAAGELAEEIARGTRTVADPAERLVAAVRTALDGVRGNPALAAWFTPETAGPA 120
Query 121 GEMAGRSEVIAALAAAFLNSLGP-DDPTTVERRARWVVRMLTSLLMFPGRDEADERAMIA 179
+A S I ++A +FL + P D T RARW+VR++ SLL P E ++
Sbjct 121 THLALVSPAIESIATSFLGGVAPASDETDRTERARWLVRVIVSLLSDPAGSPDAEADLLR 180
Query 180 EFVVPIV 186
FVVP++
Sbjct 181 RFVVPVI 187
>gi|296179475|gb|ADG96481.1| TetR transcriptional regulator [Gordonia cholesterolivorans]
Length=214
Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/184 (47%), Positives = 105/184 (58%), Gaps = 5/184 (2%)
Query 3 GTDWLSARRTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREALR 62
G DW+ R D IL+ A +F + A+ M +IA A GCSRATLYRYFD R L+
Sbjct 28 GADWMRGTRRPAVQDAILEIAGEVFATKG-ANASMGDIAAAVGCSRATLYRYFDGRRQLQ 86
Query 63 TAYVHRETRRLGREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIGGE 122
AYV R RR+G + ++D EPA+RL SI L VR +PALAAWFT + GE
Sbjct 87 LAYVERVARRIGAVVAETVSDRPEPADRLTESIIVALTEVRRDPALAAWFTAAGAGVAGE 146
Query 123 MAGRSEVIAALAAAFLNSLGPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAMIAEFV 182
+A SE I +A AFL + G D ARWVVR++ SLL P ERA+IA FV
Sbjct 147 LALSSEFIETVATAFLGTGGEDGGEA----ARWVVRVIVSLLAVPEGSPERERAVIARFV 202
Query 183 VPIV 186
P V
Sbjct 203 TPTV 206
>gi|296141453|ref|YP_003648696.1| TetR family transcriptional regulator [Tsukamurella paurometabola
DSM 20162]
gi|296029587|gb|ADG80357.1| transcriptional regulator, TetR family [Tsukamurella paurometabola
DSM 20162]
Length=194
Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 79/183 (44%), Positives = 112/183 (62%), Gaps = 3/183 (1%)
Query 5 DWLSARRTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREALRTA 64
+W +AR + AADRIL +A LF + A++GM E+A+AAGCSRATLYRYF +R+AL A
Sbjct 2 NWQAARERD-AADRILASAAELFARDGVAAVGMAELAQAAGCSRATLYRYFPNRQALHAA 60
Query 65 YVHRETRRLGREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIGGEMA 124
++ RE R + + + + + +P ERLL ++ + VR P LAAWF PP GG +A
Sbjct 61 FIQREARAVAVAVRDRTSGIADPGERLLRALQIAVEEVRGAPPLAAWFAVDEPPAGG-IA 119
Query 125 GRSEVIAALAAAFLNSL-GPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAMIAEFVV 183
RS I A+A L + G D P + ARW+VR++ SLL P D + E ++ FV+
Sbjct 120 SRSAGIEAVAFGLLTEITGADAPESAPAAARWLVRVVVSLLSHPEPDASAEEELLRRFVI 179
Query 184 PIV 186
P V
Sbjct 180 PAV 182
>gi|326329199|ref|ZP_08195526.1| transcriptional regulator, TetR family [Nocardioidaceae bacterium
Broad-1]
gi|325952994|gb|EGD45007.1| transcriptional regulator, TetR family [Nocardioidaceae bacterium
Broad-1]
Length=196
Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/177 (43%), Positives = 112/177 (64%), Gaps = 6/177 (3%)
Query 6 WLSARRTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREALRTAY 65
WL A R+ELAA+RILDAA LF +R GM+E+A+AAGCSRATLYRYF++R+AL A+
Sbjct 22 WLEAERSELAAERILDAAGALFVERGVDRPGMDEVARAAGCSRATLYRYFENRQALIHAF 81
Query 66 VHRETRRLGREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIGGEMAG 125
HRE R + ++ +AD+ +P R++ ++ L VR+ P LAAW++ + E+
Sbjct 82 AHREARLITTQVGQAVADISDPQRRVVEAVLACLAAVRERPHLAAWYSGDSTLL-REVLR 140
Query 126 RSEVIAALAAAFLNSLGPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAMIAEFV 182
S +I +A ++L S G +DP A WV+R++ S L PG D A ER ++ F+
Sbjct 141 DSPIIRGVAQSYLAS-GDEDPDL----ADWVLRIILSFLTEPGEDAATERRLLERFL 192
>gi|326381887|ref|ZP_08203580.1| TetR family transcriptional regulator [Gordonia neofelifaecis
NRRL B-59395]
gi|326199313|gb|EGD56494.1| TetR family transcriptional regulator [Gordonia neofelifaecis
NRRL B-59395]
Length=198
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/182 (44%), Positives = 101/182 (56%), Gaps = 5/182 (2%)
Query 5 DWLSARRTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREALRTA 64
DW+ R DRI++ A +F +R A M +IA A GCSRATLYRYFD R L+
Sbjct 15 DWMRDTRRSAVQDRIVEIAGDVFAERG-ADASMADIAAAVGCSRATLYRYFDGRRTLQLE 73
Query 65 YVHRETRRLGREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIGGEMA 124
Y+ R RR+G + +A +PA RL ++ L VR PALAAWFT E+A
Sbjct 74 YIGRVARRIGAAVEAAVAGEADPAVRLTEAVVVALDQVRREPALAAWFTPGGAGSTSELA 133
Query 125 GRSEVIAALAAAFLNSLGPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAMIAEFVVP 184
SE + A FL+ G + ARWV+R++ SLL+ PG ADERAMIA FV P
Sbjct 134 LSSEFVETAATTFLSVGGRPG----QDAARWVIRVIVSLLVVPGGSPADERAMIATFVTP 189
Query 185 IV 186
V
Sbjct 190 SV 191
>gi|31792448|ref|NP_854941.1| hypothetical protein Mb1287c [Mycobacterium bovis AF2122/97]
gi|121637184|ref|YP_977407.1| hypothetical protein BCG_1315c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224989659|ref|YP_002644346.1| hypothetical protein JTY_1290 [Mycobacterium bovis BCG str. Tokyo
172]
gi|31618037|emb|CAD94148.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
gi|121492831|emb|CAL71302.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224772772|dbj|BAH25578.1| hypothetical protein JTY_1290 [Mycobacterium bovis BCG str. Tokyo
172]
gi|341601202|emb|CCC63875.1| conserved hypothetical protein [Mycobacterium bovis BCG str.
Moreau RDJ]
Length=99
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/52 (100%), Positives = 52/52 (100%), Gaps = 0/52 (0%)
Query 151 RRARWVVRMLTSLLMFPGRDEADERAMIAEFVVPIVTPASAAARKAGHPGPE 202
RRARWVVRMLTSLLMFPGRDEADERAMIAEFVVPIVTPASAAARKAGHPGPE
Sbjct 48 RRARWVVRMLTSLLMFPGRDEADERAMIAEFVVPIVTPASAAARKAGHPGPE 99
>gi|325674834|ref|ZP_08154521.1| TetR family transcriptional regulator [Rhodococcus equi ATCC
33707]
gi|325554420|gb|EGD24095.1| TetR family transcriptional regulator [Rhodococcus equi ATCC
33707]
Length=183
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/181 (34%), Positives = 93/181 (52%), Gaps = 8/181 (4%)
Query 5 DWLSA-RRTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREALRT 63
DWL+ R E+A RI AA LF +R +G+ ++A+ AGCSRATLYRY + A+
Sbjct 6 DWLAGGNRREVAVARITAAATDLFLERGFDRLGVLDVAERAGCSRATLYRYVGGKPAIVA 65
Query 64 AYVHRETRRLGREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIGGEM 123
A V + ++ +A ++ A+R++ +I T++ VR +PAL+ WF R
Sbjct 66 AVVSSAAASVAEDVACAVAH-LDGADRVVEAILTSVAAVRADPALSYWFAHNRTGAANGY 124
Query 124 AGRSEVIAALAAAFLNSLGPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAMIAEFVV 183
S +A A ++ D W+VR++ +LL +PG D ER M+ FV
Sbjct 125 LASSPDLARFATTLTGAVADD------LAGEWIVRVVLTLLAWPGADGDTERHMVRHFVA 178
Query 184 P 184
P
Sbjct 179 P 179
>gi|169629026|ref|YP_001702675.1| TetR family transcriptional regulator [Mycobacterium abscessus
ATCC 19977]
gi|169240993|emb|CAM62021.1| Putative transcriptional regulator, TetR family [Mycobacterium
abscessus]
Length=214
Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/191 (32%), Positives = 98/191 (52%), Gaps = 13/191 (6%)
Query 5 DWLS-ARRTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREALRT 63
DWL + R +AADRI+ A + + + ++ +A+ AGCSRAT+YR+ + A+
Sbjct 6 DWLHGSDRHTIAADRIVSVAAKQIARHGLDRLNLDAVAREAGCSRATVYRHVGGKTAIVD 65
Query 64 AYVHRETRRLGREIM--VKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIGG 121
A + R ++ +I V+ AD R +V+IT +L +R +P ++ T P G
Sbjct 66 AVLARNIAKVTADIQRAVQSADA---RRRAVVAITASLTAIRHDPVISTMIATMSPTSLG 122
Query 122 EMAGRSEVIAALAAAFLNSLGPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAMIAEF 181
S I A+AF G D T A+W+ R++ +LL +P D A E MI F
Sbjct 123 SYLNASSEIPRSASAF---TGLADETA----AQWISRVVMALLFWPTSDPAQESEMIERF 175
Query 182 VVPIVTPASAA 192
V P++ A+A+
Sbjct 176 VYPVLKDATAS 186
>gi|240172002|ref|ZP_04750661.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC
12478]
Length=186
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 64/187 (35%), Positives = 96/187 (52%), Gaps = 18/187 (9%)
Query 5 DWL-SARRTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREALRT 63
DWL R E AA+RI +AA L + ++ ++++A CSRAT+YRY + +R
Sbjct 5 DWLLGGDRREAAAERIYEAATDLIARDGLNALDIDKLAIRVHCSRATIYRYVGGKTEIRN 64
Query 64 AYVHRETRRLGREIMVKIADVVEP---AERLLVSITTTLRMVRDNPALAAWFTTTRPPIG 120
A V R R I+ + VEP ERL+ +I T++ +R +P + R G
Sbjct 65 AVVRRTAHR----IVDSVRTAVEPLSGVERLVTAIMLTIKQIRADPLCQLMVGSIR---G 117
Query 121 G--EMAGRSEV-IAALAAAFLNSLGPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAM 177
G ++A +E + A A L L DP A+WVVR++ SL+ +PG DE ER +
Sbjct 118 GTRQVAWLAESPLTAQFATDLAGLAGGDPQA----AKWVVRVVLSLVYWPGEDEEAERRL 173
Query 178 IAEFVVP 184
+ FV P
Sbjct 174 VQNFVAP 180
>gi|183982663|ref|YP_001850954.1| transcriptional regulatory protein [Mycobacterium marinum M]
gi|183175989|gb|ACC41099.1| transcriptional regulatory protein [Mycobacterium marinum M]
Length=199
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/186 (30%), Positives = 92/186 (50%), Gaps = 9/186 (4%)
Query 1 MAGTDWLSARRTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREA 60
MAG +W+ R+ +AA+ I DAA L ++ ++++A CSRAT+YRY +
Sbjct 1 MAGKNWIVGDRSAVAAELIYDAAAELIASDGLSAFDIDKLAARVHCSRATIYRYAGGKAK 60
Query 61 LRTAYVHRETRRLGREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPI- 119
+R + R R+ + + A+ + AER++ S+ L VR +P L + P
Sbjct 61 IRDVVIARAAARIVESVRAQ-AESLTGAERVVASVEFALAGVRSDP-LGRHLVGSFPKSA 118
Query 120 -GGEMAGRSEVIAALAAAFLNSLGPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAMI 178
G E S+++A AA G D + W+VR++ SL+++P D ER ++
Sbjct 119 NGAEWFVGSKLVANFAADLAGITGGD-----HQAGGWLVRVVLSLILWPAEDAEIERQLV 173
Query 179 AEFVVP 184
F+ P
Sbjct 174 HRFIGP 179
>gi|118618501|ref|YP_906833.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
gi|118570611|gb|ABL05362.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
Length=184
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/187 (31%), Positives = 91/187 (49%), Gaps = 8/187 (4%)
Query 1 MAGTDWL-SARRTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSRE 59
M DWL R AADRI DAA L + ++ +A CSRAT+YRY +
Sbjct 1 MPNDDWLVGGDRRRAAADRIYDAATDLIAHEGINQLDIDRLATLVHCSRATVYRYVGGKN 60
Query 60 ALRTAYVHRETRRLGREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPI 119
+R V R R+ + + + + ER++ +I +++ +R +P L ++
Sbjct 61 DIRNVVVKRAAARIADSVRSAVEN-LSGRERVVAAIILSVQRIRADP-LGQLMISSIHGG 118
Query 120 GGEMAGRSEV-IAALAAAFLNSLGPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAMI 178
E+A ++ + A A+ L L DP ARWVVR++ SL+ +P E ER M+
Sbjct 119 TQEVAWLADSPLLAGVASDLTGLAGGDPHA----ARWVVRVVLSLMYWPAESEDVERLMV 174
Query 179 AEFVVPI 185
+FV P+
Sbjct 175 EKFVAPV 181
>gi|183982661|ref|YP_001850952.1| transcriptional regulatory protein [Mycobacterium marinum M]
gi|183175987|gb|ACC41097.1| transcriptional regulatory protein [Mycobacterium marinum M]
Length=184
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/187 (30%), Positives = 91/187 (49%), Gaps = 8/187 (4%)
Query 1 MAGTDWL-SARRTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSRE 59
M DWL R AADRI DAA L + ++ +A CSRAT+YRY +
Sbjct 1 MPNDDWLVGGDRRRAAADRIYDAATDLIAHEGINQLDIDRLATLVHCSRATVYRYVGGKN 60
Query 60 ALRTAYVHRETRRLGREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPI 119
+R V R R+ + + + + ER++ +I +++ +R +P L ++
Sbjct 61 DIRNVVVKRAAARIADSVRSAVEN-LSGRERVVAAIILSVQRIRADP-LGQLMISSIHGG 118
Query 120 GGEMAGRSEV-IAALAAAFLNSLGPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAMI 178
E+A ++ + A A+ L L DP A+WVVR++ SL+ +P E ER M+
Sbjct 119 TQEVAWLADSPLLAGVASDLTGLAGGDPHA----AKWVVRIVLSLMYWPAESEDVERLMV 174
Query 179 AEFVVPI 185
+FV P+
Sbjct 175 EKFVAPV 181
>gi|120404739|ref|YP_954568.1| TetR family transcriptional regulator [Mycobacterium vanbaalenii
PYR-1]
gi|119957557|gb|ABM14562.1| transcriptional regulator, TetR family [Mycobacterium vanbaalenii
PYR-1]
Length=178
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/181 (33%), Positives = 87/181 (49%), Gaps = 11/181 (6%)
Query 5 DWLSARRTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREALRTA 64
DWL R AADRI AA L + M + A CSRAT+YR+ + +R A
Sbjct 4 DWLVGDRRAEAADRIFSAATDLIVRDGLDGFDMAALQAAVHCSRATIYRHVGGKAQIREA 63
Query 65 YVHRETRRLGREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIGGEMA 124
+ R+ R+ + + + AER + ++ L +R +P + R E+
Sbjct 64 VLLRQAERIIATVRSAVVG-LSGAERTVTAVVVALERIRADPIGQTLLSAMRK---DELT 119
Query 125 --GRSEVIAALAAAFLNSLGPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAMIAEFV 182
GRS V ALAA L + DDP A+W+VR++ +LL +P D A ER M+ F+
Sbjct 120 WIGRSAVPPALAAE-LTGIDDDDPQA----AQWIVRVVLALLFWPVEDPAAEREMLQRFL 174
Query 183 V 183
+
Sbjct 175 I 175
>gi|340626788|ref|YP_004745240.1| putative transcriptional regulatory protein [Mycobacterium canettii
CIPT 140010059]
gi|340004978|emb|CCC44126.1| putative transcriptional regulatory protein [Mycobacterium canettii
CIPT 140010059]
Length=186
Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/186 (28%), Positives = 96/186 (52%), Gaps = 8/186 (4%)
Query 1 MAGTDWL-SARRTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSRE 59
M G DW+ R +AA+RI AA L T+ ++ ++++A+ CSRAT+YR +
Sbjct 1 MPGNDWIVGGNRRTIAAERIYAAATDLITRHGLNALDIDKLAREVHCSRATIYRLAGGKA 60
Query 60 ALRTAYVHRETRRLGREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPI 119
+R + R R+ + + + + ER++ +I +L+ +R +P F +
Sbjct 61 QIRNVVLTRAAARIADGVRSDV-ETLRGRERVVAAILLSLQRIRSDPLGKLMFGSIHGG- 118
Query 120 GGEMAGRSEV-IAALAAAFLNSLGPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAMI 178
GE+A +E + A A L + DP + A+WVVR++ SL+ +P ++ ER ++
Sbjct 119 AGELAWLTESPLLADFATELTGIAGGDP----QGAKWVVRVVLSLMYWPAENDEAERRLV 174
Query 179 AEFVVP 184
++V P
Sbjct 175 EKYVAP 180
>gi|229488893|ref|ZP_04382759.1| putative transcriptional regulatory protein [Rhodococcus erythropolis
SK121]
gi|229324397|gb|EEN90152.1| putative transcriptional regulatory protein [Rhodococcus erythropolis
SK121]
Length=184
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/181 (32%), Positives = 89/181 (50%), Gaps = 12/181 (6%)
Query 5 DWLSA-RRTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREALRT 63
DWL+ R+ELA +RI AA L ++ +++A AGCSRATLYRY + A+R
Sbjct 11 DWLAGGNRSELATERIFAAAAELIREQGFDRFNADDVAARAGCSRATLYRYVGGKSAIRE 70
Query 64 AYVHRETRRLGREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIGGEM 123
+ R + ++ + + + ER++ SI + +R + A++ R E
Sbjct 71 GLLSRGAASVASQVATAV-ESLHGDERIVESILVAVDAIRSDAAMSHGLAAARANGIDEY 129
Query 124 AGRSEVI--AALAAAFLNSLGPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAMIAEF 181
S ++ AL A L DP E ++WVVR++ LL +P D A ER M+ F
Sbjct 130 LVSSPLLPRTALELAGL------DPEGQE--SQWVVRIVLMLLAWPLADRAAERRMVESF 181
Query 182 V 182
V
Sbjct 182 V 182
>gi|15608914|ref|NP_216292.1| transcriptional regulatory protein [Mycobacterium tuberculosis
H37Rv]
gi|15841245|ref|NP_336282.1| TetR family transcriptional regulator [Mycobacterium tuberculosis
CDC1551]
gi|31792965|ref|NP_855458.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97]
74 more sequence titles
Length=186
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/186 (28%), Positives = 96/186 (52%), Gaps = 8/186 (4%)
Query 1 MAGTDWL-SARRTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSRE 59
M G DW+ R +AA+RI AA L T+ ++ ++++A+ CSRAT+YR +
Sbjct 1 MPGNDWIVGGNRRTIAAERIYAAATDLITRYGLNALDIDKLAREVHCSRATIYRRAGGKA 60
Query 60 ALRTAYVHRETRRLGREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPI 119
+R + R R+ + + + + ER++ +I +L+ +R +P F +
Sbjct 61 QIRDVVLTRAAARIADGVRSDV-ETLRGRERVVAAILLSLQRIRSDPLGKLMFGSIHGG- 118
Query 120 GGEMAGRSEV-IAALAAAFLNSLGPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAMI 178
GE+A +E + A A L + DP + A+WVVR++ SL+ +P ++ ER ++
Sbjct 119 AGELAWLTESPLLADFATELTGIAGGDP----QGAKWVVRVVLSLMYWPAENDEAERRLV 174
Query 179 AEFVVP 184
++V P
Sbjct 175 EKYVAP 180
>gi|54026327|ref|YP_120569.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
gi|54017835|dbj|BAD59205.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
Length=213
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/182 (32%), Positives = 87/182 (48%), Gaps = 14/182 (7%)
Query 18 RILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREALRTAYVHRETRRLGREI 77
RILDAA LF + ++IA+ AG +RATLYR +++ + A + RET R+ I
Sbjct 23 RILDAALTLFADLGITRVSADDIARQAGVNRATLYRRIGAKDVIVRAALLRETARVLDRI 82
Query 78 MVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIGGEMAGRSEVIAALAAAF 137
+ V +P ER+ T+ ++R NP L R + + I ALA AF
Sbjct 83 SAALDAVDDPVERVTRGFAVTVTLLRTNPILVKLLAVDRDQTLAAITVGAADILALATAF 142
Query 138 L------NSLGPDDPTTVERRARWVVRMLTSLLMFPG-----RDEADERAMIAEFVVPIV 186
+ G D TV A +VR++ SL++ P R EA+ R E +VP++
Sbjct 143 VAEQILATDRGVRDAHTV---AGMIVRLVHSLVLTPDAPPLLRTEAELRTFAGEHLVPLL 199
Query 187 TP 188
P
Sbjct 200 LP 201
>gi|226308419|ref|YP_002768379.1| TetR family transcriptional regulator [Rhodococcus erythropolis
PR4]
gi|226187536|dbj|BAH35640.1| putative TetR family transcriptional regulator [Rhodococcus erythropolis
PR4]
Length=181
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/181 (31%), Positives = 88/181 (49%), Gaps = 12/181 (6%)
Query 5 DWLSA-RRTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREALRT 63
DWL+ R ELA +RI AA L ++ +++A AGCSRATLYRY + A+R
Sbjct 8 DWLAGGNRRELATERIFAAAAELIREQGFVRFSADDVASRAGCSRATLYRYVGGKSAIRE 67
Query 64 AYVHRETRRLGREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIGGEM 123
+ R + + + + ER++ SI + +R + A++ R E
Sbjct 68 GLLSRGAASV-ASQVAAAVESLRGDERIVESILVAVDAIRADAAMSHGLAAARANGIDEY 126
Query 124 AGRSEVI--AALAAAFLNSLGPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAMIAEF 181
S ++ AL A L+ G ++++WVVR++ LL +P D ADER M+ F
Sbjct 127 LVSSPLLPRTALELAGLDPEG--------QQSQWVVRIVLMLLAWPLADRADERRMVESF 178
Query 182 V 182
V
Sbjct 179 V 179
>gi|145223611|ref|YP_001134289.1| TetR family transcriptional regulator [Mycobacterium gilvum PYR-GCK]
gi|145216097|gb|ABP45501.1| transcriptional regulator, TetR family [Mycobacterium gilvum
PYR-GCK]
Length=197
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/181 (30%), Positives = 86/181 (48%), Gaps = 10/181 (5%)
Query 14 LAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREALRTAYVHRETRRL 73
+A DR+LDAAE + + M +IA+ AG SRAT+YRYF SRE++ + + R +R
Sbjct 1 MARDRLLDAAETCLQSKGLSGTTMEDIARQAGVSRATVYRYFPSRESVVSGVIVRAAQRY 60
Query 74 GREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIGGEMA-GRSEVIAA 132
I +I+ + +L + T+R R P + F + G +A G S +
Sbjct 61 LHRISGRISAHTDLGSAILDFVAVTVRAARREPIIGVLFGSDDELAGVGLAEGTSVALFE 120
Query 133 LAAAFLNSLGP------DDPTTVERRARWVVRMLTSLLMFPG---RDEADERAMIAEFVV 183
L A FL + + +V+ A W++R + SLL G R A + F++
Sbjct 121 LVADFLRPVFAAHWDQLEAGVSVDDAAEWILRTILSLLSVRGPRHRSPEGLDAFLRRFLL 180
Query 184 P 184
P
Sbjct 181 P 181
>gi|145224059|ref|YP_001134737.1| TetR family transcriptional regulator [Mycobacterium gilvum PYR-GCK]
gi|315444395|ref|YP_004077274.1| TetR family transcriptional regulator [Mycobacterium sp. Spyr1]
gi|145216545|gb|ABP45949.1| transcriptional regulator, TetR family [Mycobacterium gilvum
PYR-GCK]
gi|315262698|gb|ADT99439.1| transcriptional regulator, TetR family [Mycobacterium sp. Spyr1]
Length=197
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/181 (30%), Positives = 88/181 (49%), Gaps = 8/181 (4%)
Query 5 DWLSAR-RTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREALRT 63
DWL R R A+RI AA L +R G++ +A A CS AT+YR+ + A+R
Sbjct 15 DWLIGRDRRSEGAERIYVAAADLMARRGYDGFGIDALAAAVHCSPATIYRHVGGKSAIRD 74
Query 64 AYVHRETRRLGREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIGGEM 123
+ R+ + + IA +E +ER++ + L+ +R P + PP G +
Sbjct 75 VVLERQAEHVLDSVRQAIAG-LEGSERIVTATLVALQRMRAAPLAEVMRSMPGPPGTGWL 133
Query 124 AGRSEVIAALAAAFLNSLGPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAMIAEFVV 183
S V+A LAA + + DP A+W++R+ +L +P DE E+A + F+
Sbjct 134 ID-SPVVARLAAEMVGT-ADADPLA----AQWLIRVFLALWYWPMHDEEAEKAAVLRFLG 187
Query 184 P 184
P
Sbjct 188 P 188
>gi|226361809|ref|YP_002779587.1| hypothetical protein ROP_23950 [Rhodococcus opacus B4]
gi|226240294|dbj|BAH50642.1| hypothetical protein [Rhodococcus opacus B4]
Length=151
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/151 (33%), Positives = 74/151 (50%), Gaps = 7/151 (4%)
Query 35 IGMNEIAKAAGCSRATLYRYFDSREALRTAYVHRETRRLGREIMVKIADVVEPAERLLVS 94
+ ++ +A AGCSRATLYRY + AL A + R + I + E AER++ +
Sbjct 1 MDVDRVAARAGCSRATLYRYVGGKRALVEAVMSRAADAVAERIEAALQP-FENAERIVEA 59
Query 95 ITTTLRMVRDNPALAAWFTTTRPPIGGEMAGRSEVIAALAAAFLNSLGPDDPTTVERRAR 154
I L +R P L W P E R+ + +A + L + PD E A
Sbjct 60 ILAALVEIRAEPTLVRWLAGAHPRSTDEYLARAPELGRVAIS-LTRIAPD-----EEAAG 113
Query 155 WVVRMLTSLLMFPGRDEADERAMIAEFVVPI 185
W+VR++ +LL +P D A ER ++ FV P+
Sbjct 114 WMVRVVLALLTWPLPDPAAERHIVERFVEPV 144
>gi|108800189|ref|YP_640386.1| TetR family transcriptional regulator [Mycobacterium sp. MCS]
gi|119869317|ref|YP_939269.1| TetR family transcriptional regulator [Mycobacterium sp. KMS]
gi|126435812|ref|YP_001071503.1| TetR family transcriptional regulator [Mycobacterium sp. JLS]
gi|108770608|gb|ABG09330.1| transcriptional regulator, TetR family [Mycobacterium sp. MCS]
gi|119695406|gb|ABL92479.1| transcriptional regulator, TetR family [Mycobacterium sp. KMS]
gi|126235612|gb|ABN99012.1| transcriptional regulator, TetR family [Mycobacterium sp. JLS]
Length=228
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/182 (31%), Positives = 82/182 (46%), Gaps = 10/182 (5%)
Query 15 AADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREALRTAYVHRETRRLG 74
A DR+LDAAER M +I + AG SRAT+YRYF SREA+ + + R R
Sbjct 38 ARDRLLDAAERCLESCGVVGTTMEDIGRTAGVSRATVYRYFPSREAVMSGVIIRAAERYL 97
Query 75 REIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIG-GEMAGRSEVIAAL 133
I +IA + L+ + T+ R + F + G G AG S + +
Sbjct 98 DRISPRIAAHADLGSALVDFVEYTVEAARREEIIGLLFGSDEELAGVGLAAGTSTSLFEI 157
Query 134 AAAFLNSL------GPDDPTTVERRARWVVRMLTSLLMFPG---RDEADERAMIAEFVVP 184
FL + + +V+ A WVVR + SLL G R RA ++ F++P
Sbjct 158 VTEFLRPIFTRHWSCVEPGVSVDDAAEWVVRTILSLLTVRGPRERSRDGLRAFLSRFLLP 217
Query 185 IV 186
+
Sbjct 218 AI 219
>gi|339294717|gb|AEJ46828.1| transcriptional regulatory protein [Mycobacterium tuberculosis
CCDC5079]
gi|339298346|gb|AEJ50456.1| transcriptional regulatory protein [Mycobacterium tuberculosis
CCDC5180]
Length=179
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/179 (27%), Positives = 91/179 (51%), Gaps = 7/179 (3%)
Query 7 LSARRTELAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREALRTAYV 66
+ R +AA+RI AA L T+ ++ ++++A+ CSRAT+YR + +R +
Sbjct 1 MGGNRRTIAAERIYAAATDLITRYGLNALDIDKLAREVHCSRATIYRRAGGKAQIRDVVL 60
Query 67 HRETRRLGREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIGGEMAGR 126
R R+ + + + + ER++ +I +L+ +R +P F + GE+A
Sbjct 61 TRAAARIADGVRSDV-ETLRGRERVVAAILLSLQRIRSDPLGKLMFGSIHGG-AGELAWL 118
Query 127 SEV-IAALAAAFLNSLGPDDPTTVERRARWVVRMLTSLLMFPGRDEADERAMIAEFVVP 184
+E + A A L + DP A+WVVR++ SL+ +P ++ ER ++ ++V P
Sbjct 119 TESPLLADFATELTGIAGGDPQG----AKWVVRVVLSLMYWPAENDEAERRLVEKYVAP 173
>gi|326383820|ref|ZP_08205505.1| TetR family transcriptional regulator [Gordonia neofelifaecis
NRRL B-59395]
gi|326197584|gb|EGD54773.1| TetR family transcriptional regulator [Gordonia neofelifaecis
NRRL B-59395]
Length=219
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/182 (30%), Positives = 85/182 (47%), Gaps = 13/182 (7%)
Query 18 RILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREALRTAYVHRETRRLGREI 77
++LDAA F + A M E+A+ AG +R T+YR FD+++AL A + RE E
Sbjct 35 KLLDAAYEQFCESGIARTSMEEVARRAGTARITIYRKFDTKDALVDAVMIREFENYFVEF 94
Query 78 MVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIGGEMAGRSEVIAALAAAF 137
+ +A PA+R++V+ T+LR + NP + T + G + G F
Sbjct 95 LQVMAQAPTPADRVIVAFVTSLRTIGGNPLIRKLLETEPALVPGFVGGGDGRTLTAVRDF 154
Query 138 L--NSLGPDDPTTVERRAR------WVVRMLTSLLMFPG----RDEADERAMIA-EFVVP 184
+ L + +R R VVR+ S L P D+ DE A A EF++P
Sbjct 155 VAHQILREQTAGNIPKRVRTIPAADLVVRIAGSFLTIPSDLMDYDDPDELAGFAREFLLP 214
Query 185 IV 186
++
Sbjct 215 VL 216
>gi|326331023|ref|ZP_08197322.1| putative protein TPRXL [Nocardioidaceae bacterium Broad-1]
gi|325951234|gb|EGD43275.1| putative protein TPRXL [Nocardioidaceae bacterium Broad-1]
Length=221
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/184 (31%), Positives = 86/184 (47%), Gaps = 13/184 (7%)
Query 18 RILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREALRTAYVHRETRRLGREI 77
++LDAA F + M E+AK AG +R T+YR F +++AL V RE RR +
Sbjct 33 KLLDAAAEQFRRIGIRRTTMEEVAKRAGVARITVYRRFANKDALVEQVVRREFRRYFDQF 92
Query 78 MVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIGGEMAGRSEVIAALAAAF 137
++ IAD + AER+ + + +R +R NP + T + + G A A F
Sbjct 93 VLDIADAADAAERVEIGFASAMRTIRGNPLIGGLLTVETDSLVHSIVGDGGRTVATIARF 152
Query 138 L------NSLGPDDPTTVERR--ARWVVRMLTSLLMFPGR-----DEADERAMIAEFVVP 184
+ + P VE A +VR TS L+ P DEA RA+ F+VP
Sbjct 153 VAGQLRREQRAGNVPAEVEVDLVAELMVRTSTSFLVTPSEVVDIDDEAQLRALARLFLVP 212
Query 185 IVTP 188
++ P
Sbjct 213 LIQP 216
>gi|183983158|ref|YP_001851449.1| transcriptional regulatory protein [Mycobacterium marinum M]
gi|183176484|gb|ACC41594.1| transcriptional regulatory protein [Mycobacterium marinum M]
Length=204
Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/182 (30%), Positives = 82/182 (46%), Gaps = 10/182 (5%)
Query 15 AADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREALRTAYVHRETRRLG 74
A DR+LDAAER M +I + AG SRAT+YRYF +REA+ + + R R
Sbjct 14 ARDRLLDAAERCLESCGVVGTTMEDIGRTAGVSRATVYRYFPNREAVMSGVIIRAAERYL 73
Query 75 REIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIG-GEMAGRSEVIAAL 133
I +IA+ + L+ + T+ R + F + G G AG S + L
Sbjct 74 DRINPRIAEHTDLGSALVDFVEYTVEAARREEIIGLLFGSDEELAGVGLAAGTSTSLFEL 133
Query 134 AAAFLNSL------GPDDPTTVERRARWVVRMLTSLLMFPG---RDEADERAMIAEFVVP 184
FL + + +V+ A WV+R + SLL G R R ++ F++P
Sbjct 134 VTEFLRPIFRRHWSYVEPGVSVDDAAEWVLRTILSLLTVRGPRERSRDGLRTFLSRFLLP 193
Query 185 IV 186
+
Sbjct 194 AI 195
>gi|145225202|ref|YP_001135880.1| TetR family transcriptional regulator [Mycobacterium gilvum PYR-GCK]
gi|145217688|gb|ABP47092.1| transcriptional regulator, TetR family [Mycobacterium gilvum
PYR-GCK]
Length=197
Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/162 (31%), Positives = 77/162 (48%), Gaps = 7/162 (4%)
Query 14 LAADRILDAAERLFTQRDPASIGMNEIAKAAGCSRATLYRYFDSREALRTAYVHRETRRL 73
+A DR+LDAAE + + M +IA+ AG SRAT+YRYF SRE++ + + R R
Sbjct 1 MARDRLLDAAETCLQGKGLSGTTMEDIARHAGVSRATVYRYFASRESVVSGVIVRAAERY 60
Query 74 GREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIGGEMA-GRSEVIAA 132
+I + +L + T+R R P + F + G +A G S +
Sbjct 61 LHRTSGRILAHTDLGSAILDFVAVTVRAARREPIIGMLFASDDELAGVGLAEGTSVALFE 120
Query 133 LAAAFLNSLGP------DDPTTVERRARWVVRMLTSLLMFPG 168
L A FL + + +V+ A W++R++ SLL G
Sbjct 121 LVAEFLRPVFAAHWHQLEAGVSVDDAAEWILRIILSLLAVRG 162
>gi|343927225|ref|ZP_08766703.1| putative TetR family transcriptional regulator [Gordonia alkanivorans
NBRC 16433]
gi|343762842|dbj|GAA13629.1| putative TetR family transcriptional regulator [Gordonia alkanivorans
NBRC 16433]
Length=230
Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/192 (31%), Positives = 88/192 (46%), Gaps = 25/192 (13%)
Query 16 ADRILDAAERLFT----QRDPASIGMNEIAKAAGCSRATLYRYFDSREALRTAYVHRETR 71
A+R+LDAA LF QR P M ++AK AG +R TLYR F +++AL V RE R
Sbjct 43 AERLLDAAFDLFCRLGIQRTP----MEKVAKNAGVTRVTLYRKFATKDALVDEVVLREFR 98
Query 72 RLGREIMVKIADVVEPAERLLVSITTTLRMVRDNPALAAWFTTTRPPIGGEMAGRSEVIA 131
R + I AER++V +LR V NP ++ + + M G ++
Sbjct 99 RYFDQFRTDIPAAQTVAERVVVGFVGSLRAVASNPLISGMADSESSMLIESMIGDDGLLL 158
Query 132 ALAAAFL----------NSLGPDDPTTVERRARWVVRMLTSLLMFPGR-----DEADERA 176
++ F+ ++ D VE A +VR+ S L P R D+A
Sbjct 159 SVVQQFVAAQLRREQLAGNISED--LDVEIVAEMMVRISASFLTVPSRVVDITDDAQLAD 216
Query 177 MIAEFVVPIVTP 188
+ F+VP++ P
Sbjct 217 IARRFLVPMLDP 228
Lambda K H
0.321 0.133 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 220408776486
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40