BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1261c Length=149 Score E Sequences producing significant alignments: (Bits) Value gi|15608401|ref|NP_215777.1| hypothetical protein Rv1261c [Mycob... 304 2e-81 gi|253799694|ref|YP_003032695.1| hypothetical protein TBMG_02720... 304 3e-81 gi|340626274|ref|YP_004744726.1| hypothetical protein MCAN_12751... 302 1e-80 gi|254231518|ref|ZP_04924845.1| conserved hypothetical protein [... 302 1e-80 gi|289749804|ref|ZP_06509182.1| conserved hypothetical protein [... 249 1e-64 gi|333989871|ref|YP_004522485.1| hypothetical protein JDM601_123... 241 3e-62 gi|289569268|ref|ZP_06449495.1| LOW QUALITY PROTEIN: conserved h... 221 2e-56 gi|183984149|ref|YP_001852440.1| hypothetical protein MMAR_4178 ... 220 5e-56 gi|126436544|ref|YP_001072235.1| hypothetical protein Mjls_3969 ... 217 6e-55 gi|118619590|ref|YP_907922.1| hypothetical protein MUL_4480 [Myc... 216 1e-54 gi|108800919|ref|YP_641116.1| hypothetical protein Mmcs_3955 [My... 216 1e-54 gi|254820368|ref|ZP_05225369.1| hypothetical protein MintA_10586... 208 2e-52 gi|240172639|ref|ZP_04751298.1| hypothetical protein MkanA1_2521... 206 1e-51 gi|342860996|ref|ZP_08717645.1| hypothetical protein MCOL_19032 ... 203 6e-51 gi|254774119|ref|ZP_05215635.1| hypothetical protein MaviaA2_055... 202 9e-51 gi|118472192|ref|YP_889280.1| hypothetical protein MSMEG_5030 [M... 200 8e-50 gi|120405409|ref|YP_955238.1| hypothetical protein Mvan_4457 [My... 199 9e-50 gi|118462620|ref|YP_880486.1| hypothetical protein MAV_1241 [Myc... 199 9e-50 gi|41408777|ref|NP_961613.1| hypothetical protein MAP2679c [Myco... 199 1e-49 gi|145222826|ref|YP_001133504.1| hypothetical protein Mflv_2238 ... 198 2e-49 gi|111021125|ref|YP_704097.1| hypothetical protein RHA1_ro04145 ... 147 5e-34 gi|296395120|ref|YP_003660004.1| hypothetical protein Srot_2739 ... 144 4e-33 gi|169629067|ref|YP_001702716.1| hypothetical protein MAB_1980c ... 139 2e-31 gi|54023544|ref|YP_117786.1| hypothetical protein nfa15760 [Noca... 137 5e-31 gi|296139863|ref|YP_003647106.1| hypothetical protein Tpau_2156 ... 136 1e-30 gi|333920775|ref|YP_004494356.1| hypothetical protein AS9A_3111 ... 127 6e-28 gi|262200095|ref|YP_003271303.1| hypothetical protein Gbro_0055 ... 122 1e-26 gi|288920589|ref|ZP_06414894.1| hypothetical protein FrEUN1fDRAF... 120 5e-26 gi|111026879|ref|YP_708857.1| hypothetical protein RHA1_ro11052 ... 114 4e-24 gi|312197940|ref|YP_004018001.1| hypothetical protein FraEuI1c_4... 113 8e-24 gi|312198241|ref|YP_004018302.1| hypothetical protein FraEuI1c_4... 112 3e-23 gi|288920153|ref|ZP_06414470.1| hypothetical protein FrEUN1fDRAF... 111 4e-23 gi|330466024|ref|YP_004403767.1| hypothetical protein VAB18032_1... 105 2e-21 gi|312197986|ref|YP_004018047.1| hypothetical protein FraEuI1c_4... 105 2e-21 gi|158312480|ref|YP_001504988.1| hypothetical protein Franean1_0... 103 6e-21 gi|288916088|ref|ZP_06410469.1| hypothetical protein FrEUN1fDRAF... 102 3e-20 gi|158317142|ref|YP_001509650.1| hypothetical protein Franean1_5... 101 4e-20 gi|317507752|ref|ZP_07965456.1| hypothetical protein HMPREF9336_... 100 9e-20 gi|271966731|ref|YP_003340927.1| hypothetical protein Sros_5424 ... 99.8 1e-19 gi|41408280|ref|NP_961116.1| hypothetical protein MAP2182c [Myco... 98.2 4e-19 gi|300790166|ref|YP_003770457.1| hypothetical protein AMED_8359 ... 97.1 9e-19 gi|111220752|ref|YP_711546.1| hypothetical protein FRAAL1295 [Fr... 96.3 1e-18 gi|336458124|gb|EGO37107.1| deazaflavin-dependent nitroreductase... 96.3 1e-18 gi|288920357|ref|ZP_06414668.1| hypothetical protein FrEUN1fDRAF... 95.5 2e-18 gi|145593642|ref|YP_001157939.1| hypothetical protein Strop_1090... 95.1 3e-18 gi|298248690|ref|ZP_06972495.1| conserved hypothetical protein [... 95.1 3e-18 gi|302530438|ref|ZP_07282780.1| conserved hypothetical protein [... 94.4 5e-18 gi|226364186|ref|YP_002781968.1| hypothetical protein ROP_47760 ... 94.4 6e-18 gi|111021649|ref|YP_704621.1| hypothetical protein RHA1_ro04677 ... 94.0 7e-18 gi|312138188|ref|YP_004005524.1| hypothetical protein REQ_07220 ... 93.6 9e-18 >gi|15608401|ref|NP_215777.1| hypothetical protein Rv1261c [Mycobacterium tuberculosis H37Rv] gi|15840707|ref|NP_335744.1| hypothetical protein MT1299 [Mycobacterium tuberculosis CDC1551] gi|31792453|ref|NP_854946.1| hypothetical protein Mb1292c [Mycobacterium bovis AF2122/97] 70 more sequence titles Length=149 Score = 304 bits (779), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 149/149 (100%), Positives = 149/149 (100%), Gaps = 0/149 (0%) Query 1 MDISRWLERHVGVQLLRLHDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTY 60 MDISRWLERHVGVQLLRLHDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTY Sbjct 1 MDISRWLERHVGVQLLRLHDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTY 60 Query 61 ARDGDAYLIVASKGGDPRSPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQ 120 ARDGDAYLIVASKGGDPRSPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQ Sbjct 61 ARDGDAYLIVASKGGDPRSPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQ 120 Query 121 IVNENNANRYTNYQSRTSRPIPVVVLTRR 149 IVNENNANRYTNYQSRTSRPIPVVVLTRR Sbjct 121 IVNENNANRYTNYQSRTSRPIPVVVLTRR 149 >gi|253799694|ref|YP_003032695.1| hypothetical protein TBMG_02720 [Mycobacterium tuberculosis KZN 1435] gi|254364159|ref|ZP_04980205.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|134149673|gb|EBA41718.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|253321197|gb|ACT25800.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 1435] Length=157 Score = 304 bits (779), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 149/149 (100%), Positives = 149/149 (100%), Gaps = 0/149 (0%) Query 1 MDISRWLERHVGVQLLRLHDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTY 60 MDISRWLERHVGVQLLRLHDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTY Sbjct 9 MDISRWLERHVGVQLLRLHDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTY 68 Query 61 ARDGDAYLIVASKGGDPRSPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQ 120 ARDGDAYLIVASKGGDPRSPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQ Sbjct 69 ARDGDAYLIVASKGGDPRSPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQ 128 Query 121 IVNENNANRYTNYQSRTSRPIPVVVLTRR 149 IVNENNANRYTNYQSRTSRPIPVVVLTRR Sbjct 129 IVNENNANRYTNYQSRTSRPIPVVVLTRR 157 >gi|340626274|ref|YP_004744726.1| hypothetical protein MCAN_12751 [Mycobacterium canettii CIPT 140010059] gi|340004464|emb|CCC43607.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059] Length=149 Score = 302 bits (774), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 148/149 (99%), Positives = 148/149 (99%), Gaps = 0/149 (0%) Query 1 MDISRWLERHVGVQLLRLHDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTY 60 MDISRWLERHVGVQLLRLHDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKT QPRTTSLTY Sbjct 1 MDISRWLERHVGVQLLRLHDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTGQPRTTSLTY 60 Query 61 ARDGDAYLIVASKGGDPRSPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQ 120 ARDGDAYLIVASKGGDPRSPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQ Sbjct 61 ARDGDAYLIVASKGGDPRSPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQ 120 Query 121 IVNENNANRYTNYQSRTSRPIPVVVLTRR 149 IVNENNANRYTNYQSRTSRPIPVVVLTRR Sbjct 121 IVNENNANRYTNYQSRTSRPIPVVVLTRR 149 >gi|254231518|ref|ZP_04924845.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|124600577|gb|EAY59587.1| conserved hypothetical protein [Mycobacterium tuberculosis C] Length=157 Score = 302 bits (773), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 148/149 (99%), Positives = 148/149 (99%), Gaps = 0/149 (0%) Query 1 MDISRWLERHVGVQLLRLHDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTY 60 MDISRWLERHVGVQLLRLHDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTY Sbjct 9 MDISRWLERHVGVQLLRLHDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTY 68 Query 61 ARDGDAYLIVASKGGDPRSPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQ 120 ARDGDAYLIVASKGGDPRSPGWYHNLKANPDVEINVGPKRFGV AKPVQPHDPDYARLWQ Sbjct 69 ARDGDAYLIVASKGGDPRSPGWYHNLKANPDVEINVGPKRFGVIAKPVQPHDPDYARLWQ 128 Query 121 IVNENNANRYTNYQSRTSRPIPVVVLTRR 149 IVNENNANRYTNYQSRTSRPIPVVVLTRR Sbjct 129 IVNENNANRYTNYQSRTSRPIPVVVLTRR 157 >gi|289749804|ref|ZP_06509182.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289690391|gb|EFD57820.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] Length=122 Score = 249 bits (635), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 122/122 (100%), Positives = 122/122 (100%), Gaps = 0/122 (0%) Query 28 GRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTYARDGDAYLIVASKGGDPRSPGWYHNLK 87 GRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTYARDGDAYLIVASKGGDPRSPGWYHNLK Sbjct 1 GRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTYARDGDAYLIVASKGGDPRSPGWYHNLK 60 Query 88 ANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQIVNENNANRYTNYQSRTSRPIPVVVLT 147 ANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQIVNENNANRYTNYQSRTSRPIPVVVLT Sbjct 61 ANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQIVNENNANRYTNYQSRTSRPIPVVVLT 120 Query 148 RR 149 RR Sbjct 121 RR 122 >gi|333989871|ref|YP_004522485.1| hypothetical protein JDM601_1231 [Mycobacterium sp. JDM601] gi|333485839|gb|AEF35231.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=152 Score = 241 bits (615), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 115/147 (79%), Positives = 127/147 (87%), Gaps = 0/147 (0%) Query 1 MDISRWLERHVGVQLLRLHDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTY 60 MDISRW+E +GV+LLRLHD +Y+G+NGRIGHR PG PPSLLLHT GAKT Q RT SLTY Sbjct 1 MDISRWVEDQLGVRLLRLHDKLYQGSNGRIGHRFPGVPPSLLLHTVGAKTGQARTNSLTY 60 Query 61 ARDGDAYLIVASKGGDPRSPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQ 120 ARDGD YLIVAS GG PRSPGWYHNLKA+PD EINVGP+RF VTA+PV P DPDYARLW+ Sbjct 61 ARDGDTYLIVASMGGAPRSPGWYHNLKAHPDAEINVGPRRFAVTARPVLPDDPDYARLWR 120 Query 121 IVNENNANRYTNYQSRTSRPIPVVVLT 147 IVN NNA+RY YQ RT+RPIPVVVLT Sbjct 121 IVNANNAHRYEAYQRRTTRPIPVVVLT 147 >gi|289569268|ref|ZP_06449495.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289543022|gb|EFD46670.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium tuberculosis T17] Length=108 Score = 221 bits (564), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 108/108 (100%), Positives = 108/108 (100%), Gaps = 0/108 (0%) Query 1 MDISRWLERHVGVQLLRLHDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTY 60 MDISRWLERHVGVQLLRLHDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTY Sbjct 1 MDISRWLERHVGVQLLRLHDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTY 60 Query 61 ARDGDAYLIVASKGGDPRSPGWYHNLKANPDVEINVGPKRFGVTAKPV 108 ARDGDAYLIVASKGGDPRSPGWYHNLKANPDVEINVGPKRFGVTAKPV Sbjct 61 ARDGDAYLIVASKGGDPRSPGWYHNLKANPDVEINVGPKRFGVTAKPV 108 >gi|183984149|ref|YP_001852440.1| hypothetical protein MMAR_4178 [Mycobacterium marinum M] gi|183177475|gb|ACC42585.1| conserved hypothetical protein [Mycobacterium marinum M] Length=150 Score = 220 bits (561), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 104/141 (74%), Positives = 116/141 (83%), Gaps = 0/141 (0%) Query 7 LERHVGVQLLRLHDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTYARDGDA 66 E++VG+ +LRLHD IYR TNGRIGHRIPG PPSLLLHT GAKT Q RTTSLTYARDGD+ Sbjct 7 FEQYVGIPILRLHDTIYRKTNGRIGHRIPGVPPSLLLHTVGAKTGQARTTSLTYARDGDS 66 Query 67 YLIVASKGGDPRSPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQIVNENN 126 YLIVAS GGD R PGWYHNL+ PD EINVGPKR VTA+ V P D DY R+WQ+VN+NN Sbjct 67 YLIVASNGGDERYPGWYHNLRKRPDCEINVGPKRIAVTARRVTPDDADYQRMWQLVNKNN 126 Query 127 ANRYTNYQSRTSRPIPVVVLT 147 ANRY +YQ RTSRPIP+ LT Sbjct 127 ANRYDSYQRRTSRPIPIFALT 147 >gi|126436544|ref|YP_001072235.1| hypothetical protein Mjls_3969 [Mycobacterium sp. JLS] gi|126236344|gb|ABN99744.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length=147 Score = 217 bits (552), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 102/139 (74%), Positives = 116/139 (84%), Gaps = 0/139 (0%) Query 9 RHVGVQLLRLHDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTYARDGDAYL 68 VG +LL+LHD +Y+ TNGRIGH PGAPPSLLLHT GAKT Q R+ +L+YARDG+ YL Sbjct 8 EQVGARLLKLHDLLYKKTNGRIGHHFPGAPPSLLLHTVGAKTGQARSNTLSYARDGEDYL 67 Query 69 IVASKGGDPRSPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQIVNENNAN 128 IVAS GG PRSPGWYHNLKANPDVEIN+G KRF VTA PV P DPDYARLW+IVN+NN+N Sbjct 68 IVASLGGAPRSPGWYHNLKANPDVEINLGTKRFAVTAHPVLPDDPDYARLWKIVNDNNSN 127 Query 129 RYTNYQSRTSRPIPVVVLT 147 RY YQ RT+RPIP+V LT Sbjct 128 RYDAYQKRTTRPIPIVKLT 146 >gi|118619590|ref|YP_907922.1| hypothetical protein MUL_4480 [Mycobacterium ulcerans Agy99] gi|118571700|gb|ABL06451.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] Length=150 Score = 216 bits (549), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 102/141 (73%), Positives = 115/141 (82%), Gaps = 0/141 (0%) Query 7 LERHVGVQLLRLHDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTYARDGDA 66 E++VG+ +LRLHD IYR TNGRIGHRIPG PPSLLLHT GAKT Q RTTSLT ARDGD+ Sbjct 7 FEQYVGIPILRLHDTIYRKTNGRIGHRIPGVPPSLLLHTVGAKTGQARTTSLTSARDGDS 66 Query 67 YLIVASKGGDPRSPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQIVNENN 126 YLIVAS GGD R PGWYHNL+ PD +INVGPKR VTA+ V P D DY R+WQ+VN+NN Sbjct 67 YLIVASNGGDERYPGWYHNLRKRPDCKINVGPKRIAVTARRVTPDDADYQRMWQLVNKNN 126 Query 127 ANRYTNYQSRTSRPIPVVVLT 147 ANRY +YQ RTSRPIP+ LT Sbjct 127 ANRYDSYQRRTSRPIPIFALT 147 >gi|108800919|ref|YP_641116.1| hypothetical protein Mmcs_3955 [Mycobacterium sp. MCS] gi|119870059|ref|YP_940011.1| hypothetical protein Mkms_4029 [Mycobacterium sp. KMS] gi|108771338|gb|ABG10060.1| hypothetical protein Mmcs_3955 [Mycobacterium sp. MCS] gi|119696148|gb|ABL93221.1| Mycobacterium tuberculosis paralogous family 11 [Mycobacterium sp. KMS] Length=147 Score = 216 bits (549), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 101/139 (73%), Positives = 115/139 (83%), Gaps = 0/139 (0%) Query 9 RHVGVQLLRLHDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTYARDGDAYL 68 VG +LL+LHD +Y+ TNGRIGH PGAPPSLLLHT GAKT Q R+ +L+YARDG+ YL Sbjct 8 EQVGARLLKLHDLLYKKTNGRIGHHFPGAPPSLLLHTVGAKTGQARSNTLSYARDGEDYL 67 Query 69 IVASKGGDPRSPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQIVNENNAN 128 IVAS GG PRSPGWYHNLKANPDVEIN+G KRF VTA PV P DPDYAR W+IVN+NN+N Sbjct 68 IVASLGGAPRSPGWYHNLKANPDVEINLGTKRFAVTAHPVLPDDPDYARFWKIVNDNNSN 127 Query 129 RYTNYQSRTSRPIPVVVLT 147 RY YQ RT+RPIP+V LT Sbjct 128 RYDAYQKRTTRPIPIVKLT 146 >gi|254820368|ref|ZP_05225369.1| hypothetical protein MintA_10586 [Mycobacterium intracellulare ATCC 13950] Length=146 Score = 208 bits (530), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 104/142 (74%), Positives = 115/142 (81%), Gaps = 1/142 (0%) Query 6 WLERHVGVQLLRLHDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTYARDGD 65 ++E V QLLR+HD +Y+ TNG IGHR P SLLLHT GAKT + RTTSLTYARDGD Sbjct 3 FVEEKVLPQLLRVHDTVYQKTNGWIGHRALWIP-SLLLHTVGAKTGKRRTTSLTYARDGD 61 Query 66 AYLIVASKGGDPRSPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQIVNEN 125 YL+VASKGG P +PGWYHNLKANPDVEINVGP+RF VTA+PV P DPDY RLWQIVN N Sbjct 62 KYLVVASKGGAPEAPGWYHNLKANPDVEINVGPRRFAVTARPVLPDDPDYPRLWQIVNNN 121 Query 126 NANRYTNYQSRTSRPIPVVVLT 147 N NRY YQ RTSRPIPVVVL+ Sbjct 122 NQNRYVEYQKRTSRPIPVVVLS 143 >gi|240172639|ref|ZP_04751298.1| hypothetical protein MkanA1_25215 [Mycobacterium kansasii ATCC 12478] Length=154 Score = 206 bits (523), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 97/141 (69%), Positives = 110/141 (79%), Gaps = 0/141 (0%) Query 7 LERHVGVQLLRLHDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTYARDGDA 66 ER VG LLRLHD +Y+ TNGRIGHRIPG PP LLLHT GAKT QPRTTSL YARDGD+ Sbjct 7 FERLVGAPLLRLHDTVYQKTNGRIGHRIPGVPPCLLLHTVGAKTGQPRTTSLAYARDGDS 66 Query 67 YLIVASKGGDPRSPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQIVNENN 126 YLIVAS GG R PGWYHNL+ +P EIN+GP+R VTA+ V P D DY+R+WQ+ N+N Sbjct 67 YLIVASNGGADRHPGWYHNLRKHPQCEINLGPRRLAVTARRVIPDDADYSRMWQLANKNT 126 Query 127 ANRYTNYQSRTSRPIPVVVLT 147 ANRYT YQ RT RPIP+ LT Sbjct 127 ANRYTVYQRRTPRPIPIFALT 147 >gi|342860996|ref|ZP_08717645.1| hypothetical protein MCOL_19032 [Mycobacterium colombiense CECT 3035] gi|342131440|gb|EGT84710.1| hypothetical protein MCOL_19032 [Mycobacterium colombiense CECT 3035] Length=146 Score = 203 bits (517), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 100/142 (71%), Positives = 115/142 (81%), Gaps = 1/142 (0%) Query 6 WLERHVGVQLLRLHDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTYARDGD 65 +LE+ + Q+LR+HD +Y+ TNG IGHR P SLLLHT GAKT + R TSLTYARDGD Sbjct 3 FLEQKLLPQVLRVHDTVYKKTNGWIGHRALWIP-SLLLHTVGAKTGKQRATSLTYARDGD 61 Query 66 AYLIVASKGGDPRSPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQIVNEN 125 YL+VASKGG P +PGWYHNLKA+PDVEINVGP+RF VTA+PV P DPDY RLWQIVN+N Sbjct 62 DYLVVASKGGAPEAPGWYHNLKAHPDVEINVGPRRFAVTARPVLPDDPDYPRLWQIVNKN 121 Query 126 NANRYTNYQSRTSRPIPVVVLT 147 N NRY YQ +TSRPIPVVVL Sbjct 122 NQNRYNEYQKKTSRPIPVVVLA 143 >gi|254774119|ref|ZP_05215635.1| hypothetical protein MaviaA2_05520 [Mycobacterium avium subsp. avium ATCC 25291] gi|336458731|gb|EGO37691.1| deazaflavin-dependent nitroreductase family protein [Mycobacterium avium subsp. paratuberculosis S397] Length=146 Score = 202 bits (515), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 100/142 (71%), Positives = 114/142 (81%), Gaps = 1/142 (0%) Query 6 WLERHVGVQLLRLHDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTYARDGD 65 ++E + Q+LR+HD +YR TNG IGHR P SLLLHT GAKT +PRTTSLTYARDG+ Sbjct 3 FVEEKLLPQVLRVHDTVYRKTNGWIGHRTLWIP-SLLLHTVGAKTGKPRTTSLTYARDGE 61 Query 66 AYLIVASKGGDPRSPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQIVNEN 125 YL+VASKGG P +PGWYHNLKA P+ EINVGPKRF VTA+ V P D DYARLW+IVN+N Sbjct 62 NYLVVASKGGAPEAPGWYHNLKAKPEAEINVGPKRFAVTARIVPPGDADYARLWEIVNKN 121 Query 126 NANRYTNYQSRTSRPIPVVVLT 147 N NRY YQ RTSRPIPVVVLT Sbjct 122 NQNRYAEYQKRTSRPIPVVVLT 143 >gi|118472192|ref|YP_889280.1| hypothetical protein MSMEG_5030 [Mycobacterium smegmatis str. MC2 155] gi|118173479|gb|ABK74375.1| conserved hypothetical protein TIGR00026 [Mycobacterium smegmatis str. MC2 155] Length=149 Score = 200 bits (508), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 94/144 (66%), Positives = 115/144 (80%), Gaps = 2/144 (1%) Query 6 WLERHVGVQLLRLHDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTYARDGD 65 W ER++G+ LL LHD +Y+ T+GRIGHRIPG P +L+LHT GAKT Q R +SL YARDGD Sbjct 3 WWERYIGLPLLLLHDKVYKATDGRIGHRIPGGPATLILHTVGAKTGQHRASSLAYARDGD 62 Query 66 AYLIVASKGGDPRSPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQIVNE- 124 YL+VASKGG+P++PGWYHNLKA+P+VEINVGPKR TA+ V P DPD+ RLW+IVN Sbjct 63 DYLVVASKGGEPKAPGWYHNLKADPNVEINVGPKRLRATARAVFPDDPDFPRLWEIVNNM 122 Query 125 -NNANRYTNYQSRTSRPIPVVVLT 147 N +RY YQ RT+R IPV+VLT Sbjct 123 PGNKDRYIGYQKRTTRQIPVIVLT 146 >gi|120405409|ref|YP_955238.1| hypothetical protein Mvan_4457 [Mycobacterium vanbaalenii PYR-1] gi|119958227|gb|ABM15232.1| hypothetical protein Mvan_4457 [Mycobacterium vanbaalenii PYR-1] Length=152 Score = 199 bits (507), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 93/149 (63%), Positives = 118/149 (80%), Gaps = 2/149 (1%) Query 1 MDISRWLERHVGVQLLRLHDAIYRGTNGRIGHRIP--GAPPSLLLHTTGAKTSQPRTTSL 58 M ++ W+E+++G +LL LHD +Y+ T GRIGHRIP G PSLLLHT GAKT + RT +L Sbjct 1 MGVALWVEQNIGTRLLMLHDKLYKSTGGRIGHRIPLPGVAPSLLLHTVGAKTGKQRTNTL 60 Query 59 TYARDGDAYLIVASKGGDPRSPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARL 118 +Y DG +Y +VASKGGDP++PGWYHNLKA+PD+EIN+GPKRF VTA PV DPDY RL Sbjct 61 SYFPDGGSYYVVASKGGDPKAPGWYHNLKAHPDIEINIGPKRFAVTATPVTAGDPDYPRL 120 Query 119 WQIVNENNANRYTNYQSRTSRPIPVVVLT 147 W++VN+ N++RY YQ RTSR IP+V LT Sbjct 121 WKMVNDGNSHRYDGYQKRTSRKIPLVRLT 149 >gi|118462620|ref|YP_880486.1| hypothetical protein MAV_1241 [Mycobacterium avium 104] gi|118163907|gb|ABK64804.1| conserved hypothetical protein [Mycobacterium avium 104] Length=135 Score = 199 bits (507), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 98/133 (74%), Positives = 109/133 (82%), Gaps = 1/133 (0%) Query 15 LLRLHDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTYARDGDAYLIVASKG 74 +LR+HD +YR TNG IGHR P SLLLHT GAKT +PRTTSLTYARDG+ YL+VASKG Sbjct 1 MLRVHDTVYRKTNGWIGHRTLWIP-SLLLHTVGAKTGKPRTTSLTYARDGENYLVVASKG 59 Query 75 GDPRSPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQIVNENNANRYTNYQ 134 G P +PGWYHNLKA P+ EINVGPKRF VTA+ V P D DYARLW+IVN+NN NRY YQ Sbjct 60 GAPEAPGWYHNLKAKPEAEINVGPKRFAVTARIVPPGDADYARLWEIVNKNNQNRYAEYQ 119 Query 135 SRTSRPIPVVVLT 147 RTSRPIPVVVLT Sbjct 120 KRTSRPIPVVVLT 132 >gi|41408777|ref|NP_961613.1| hypothetical protein MAP2679c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397135|gb|AAS04996.1| hypothetical protein MAP_2679c [Mycobacterium avium subsp. paratuberculosis K-10] Length=146 Score = 199 bits (505), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 99/142 (70%), Positives = 113/142 (80%), Gaps = 1/142 (0%) Query 6 WLERHVGVQLLRLHDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTYARDGD 65 ++E + Q+LR+HD +YR TNG IGHR P SLLLHT GAKT +PRTTSLTYARDG+ Sbjct 3 FVEEKLLPQVLRVHDTVYRKTNGWIGHRTLWIP-SLLLHTVGAKTGKPRTTSLTYARDGE 61 Query 66 AYLIVASKGGDPRSPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQIVNEN 125 YL+VASKGG P +PGWY NLKA P+ EINVGPKRF VTA+ V P D DYARLW+IVN+N Sbjct 62 NYLVVASKGGAPEAPGWYPNLKAKPEAEINVGPKRFAVTARIVPPGDADYARLWEIVNKN 121 Query 126 NANRYTNYQSRTSRPIPVVVLT 147 N NRY YQ RTSRPIPVVVLT Sbjct 122 NQNRYAEYQKRTSRPIPVVVLT 143 >gi|145222826|ref|YP_001133504.1| hypothetical protein Mflv_2238 [Mycobacterium gilvum PYR-GCK] gi|315443292|ref|YP_004076171.1| hypothetical protein Mspyr1_16700 [Mycobacterium sp. Spyr1] gi|145215312|gb|ABP44716.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK] gi|315261595|gb|ADT98336.1| conserved hypothetical protein TIGR00026 [Mycobacterium sp. Spyr1] Length=152 Score = 198 bits (504), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 92/149 (62%), Positives = 117/149 (79%), Gaps = 2/149 (1%) Query 1 MDISRWLERHVGVQLLRLHDAIYRGTNGRIGHRIP--GAPPSLLLHTTGAKTSQPRTTSL 58 M ++ W+E+++G +LL LHD +Y+ T+GRIGHRIP G PSLLLHT GAKT + R+ +L Sbjct 1 MGVALWIEKNIGTRLLMLHDKLYKATDGRIGHRIPLPGVAPSLLLHTVGAKTGKRRSNTL 60 Query 59 TYARDGDAYLIVASKGGDPRSPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARL 118 +Y DG +Y +VASKGGDPR+PGWYHNLKA PD++IN+GP RF VTA PV DPDY RL Sbjct 61 SYFPDGGSYYVVASKGGDPRAPGWYHNLKARPDIDINIGPNRFAVTATPVTADDPDYPRL 120 Query 119 WQIVNENNANRYTNYQSRTSRPIPVVVLT 147 W++VN+ N+NRY YQ RTSR IP+V LT Sbjct 121 WKVVNDGNSNRYEGYQRRTSRRIPLVRLT 149 >gi|111021125|ref|YP_704097.1| hypothetical protein RHA1_ro04145 [Rhodococcus jostii RHA1] gi|110820655|gb|ABG95939.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=143 Score = 147 bits (371), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 69/135 (52%), Positives = 90/135 (67%), Gaps = 0/135 (0%) Query 13 VQLLRLHDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTYARDGDAYLIVAS 72 V+ L+LH +Y + G +GHR+ P+LLLH+ G K+ +PRT++LTY RDG YL+VAS Sbjct 6 VKALQLHQFVYERSGGWVGHRLLFGMPTLLLHSVGRKSGKPRTSALTYGRDGARYLVVAS 65 Query 73 KGGDPRSPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQIVNENNANRYTN 132 KGG P SP W HN+ A P EI VG R V A+ V P DP+Y R+W +N N RY+ Sbjct 66 KGGAPTSPAWMHNVLAAPTCEIQVGRDRITVVARKVVPGDPEYDRMWATMNAINHGRYSE 125 Query 133 YQSRTSRPIPVVVLT 147 YQ +T RPIPV+ LT Sbjct 126 YQKKTDRPIPVIALT 140 >gi|296395120|ref|YP_003660004.1| hypothetical protein Srot_2739 [Segniliparus rotundus DSM 44985] gi|296182267|gb|ADG99173.1| conserved hypothetical protein [Segniliparus rotundus DSM 44985] Length=142 Score = 144 bits (364), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 71/133 (54%), Positives = 88/133 (67%), Gaps = 1/133 (0%) Query 14 QLLRLHDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTYARDGDAYLIVASK 73 ++L+ H +Y + G +GH++ G P LLL TTG K+ RT +LTYA D YL+VAS Sbjct 7 RVLQAHQWVYEKSGGLVGHKLLGVP-CLLLRTTGRKSGLSRTNALTYAEDAGVYLVVASN 65 Query 74 GGDPRSPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQIVNENNANRYTNY 133 GG R PGW NL+A PD EI +G + VTAK P DPDYAR W+IVN N NRYT Y Sbjct 66 GGADRPPGWLANLRAKPDCEIQIGRRTRAVTAKATLPDDPDYARRWRIVNAANKNRYTEY 125 Query 134 QSRTSRPIPVVVL 146 Q +TSRPIP+V L Sbjct 126 QKKTSRPIPIVEL 138 >gi|169629067|ref|YP_001702716.1| hypothetical protein MAB_1980c [Mycobacterium abscessus ATCC 19977] gi|169241034|emb|CAM62062.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=142 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 66/134 (50%), Positives = 90/134 (68%), Gaps = 0/134 (0%) Query 14 QLLRLHDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTYARDGDAYLIVASK 73 ++L +H IY + G +GH +PG P+LLL + GAK+ R SLTYA DG +IVAS Sbjct 7 KVLGVHQRIYIASKGYLGHHVPGMAPNLLLTSVGAKSGARRINSLTYAHDGKDLVIVASN 66 Query 74 GGDPRSPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQIVNENNANRYTNY 133 GG R+P WYHNLKA+PDV++ +G ++ V A + P D DY RLW++ + NN+ Y+ Y Sbjct 67 GGARRNPAWYHNLKAHPDVQVQLGREKRRVHATALLPGDADYERLWKLADTNNSGHYSAY 126 Query 134 QSRTSRPIPVVVLT 147 Q TSRPIP+VVL Sbjct 127 QRATSRPIPIVVLA 140 >gi|54023544|ref|YP_117786.1| hypothetical protein nfa15760 [Nocardia farcinica IFM 10152] gi|54015052|dbj|BAD56422.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=145 Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 70/135 (52%), Positives = 93/135 (69%), Gaps = 0/135 (0%) Query 13 VQLLRLHDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTYARDGDAYLIVAS 72 V+ L+ H IY +NG +GHR+ P+LLL+T G KT +PRT++LTYARDG++YL+ AS Sbjct 8 VRALKAHQWIYEHSNGWVGHRLLLGNPTLLLYTVGRKTGEPRTSALTYARDGESYLVTAS 67 Query 73 KGGDPRSPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQIVNENNANRYTN 132 GG PR PGW N+KA+P+ I VG ++ V A+ P DP+YAR W +V+ N RY+ Sbjct 68 NGGSPRPPGWLANVKASPECAIQVGRRKLEVVARATYPDDPEYARRWALVDGVNRGRYSE 127 Query 133 YQSRTSRPIPVVVLT 147 YQ T RPI VVVLT Sbjct 128 YQRMTKRPIAVVVLT 142 >gi|296139863|ref|YP_003647106.1| hypothetical protein Tpau_2156 [Tsukamurella paurometabola DSM 20162] gi|296027997|gb|ADG78767.1| conserved hypothetical protein [Tsukamurella paurometabola DSM 20162] Length=155 Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 67/149 (45%), Positives = 91/149 (62%), Gaps = 3/149 (2%) Query 1 MDISRWLERHVGV---QLLRLHDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTS 57 MDI R L + ++L H +Y + GRIGH++ PSL++ T GAK+ +PRTT Sbjct 1 MDIGRELSKAYAKAFPKVLEAHGELYVRSGGRIGHKLLFGVPSLIIRTVGAKSGEPRTTV 60 Query 58 LTYARDGDAYLIVASKGGDPRSPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYAR 117 LTY +DGD Y++VAS GG PR+P YHN+ V++ VG + F + P D DY R Sbjct 61 LTYVKDGDDYIVVASMGGAPRNPAGYHNIIKAGTVDVQVGTESFPAEVTALLPGDGDYQR 120 Query 118 LWQIVNENNANRYTNYQSRTSRPIPVVVL 146 LW + + NN RY YQ +TSRPIPV+ L Sbjct 121 LWDLADSNNGGRYAAYQRKTSRPIPVIRL 149 >gi|333920775|ref|YP_004494356.1| hypothetical protein AS9A_3111 [Amycolicicoccus subflavus DQS3-9A1] gi|333482996|gb|AEF41556.1| hypothetical protein AS9A_3111 [Amycolicicoccus subflavus DQS3-9A1] Length=144 Score = 127 bits (319), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 65/136 (48%), Positives = 85/136 (63%), Gaps = 1/136 (0%) Query 13 VQLLRLHDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTYARDGDAYLIVAS 72 V L+ H A+Y + GRIGH++ G P +LL+ T G KT + R ++LTYA Y +VAS Sbjct 9 VNTLKAHQALYERSGGRIGHKLLGVP-TLLVTTKGRKTGKERVSALTYAPVTGGYAVVAS 67 Query 73 KGGDPRSPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQIVNENNANRYTN 132 GG ++PGW HNL A P V++ VG F A+ V+P D +Y W VN N NRYT Sbjct 68 NGGASKNPGWLHNLTAQPQVKVQVGRDVFPAVARVVRPGDNEYDDAWAAVNRVNKNRYTA 127 Query 133 YQSRTSRPIPVVVLTR 148 YQ TSRPIPVV+L + Sbjct 128 YQRMTSRPIPVVILAK 143 >gi|262200095|ref|YP_003271303.1| hypothetical protein Gbro_0055 [Gordonia bronchialis DSM 43247] gi|262083442|gb|ACY19410.1| hypothetical protein Gbro_0055 [Gordonia bronchialis DSM 43247] Length=117 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 59/105 (57%), Positives = 72/105 (69%), Gaps = 0/105 (0%) Query 13 VQLLRLHDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTYARDGDAYLIVAS 72 ++ L+ H +Y + G IGHR+ P+LLL T GAKT QPR ++LTYARDGDAYL+VAS Sbjct 6 IRTLQAHQWLYEHSGGLIGHRLLMGNPTLLLRTVGAKTGQPRCSALTYARDGDAYLVVAS 65 Query 73 KGGDPRSPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYAR 117 G PR PGW N+KA PD EI VG + VTA+P P D DYAR Sbjct 66 NRGSPRPPGWLANVKAQPDCEIQVGRTKLQVTARPTYPEDADYAR 110 >gi|288920589|ref|ZP_06414894.1| hypothetical protein FrEUN1fDRAFT_4592 [Frankia sp. EUN1f] gi|288348010|gb|EFC82282.1| hypothetical protein FrEUN1fDRAFT_4592 [Frankia sp. EUN1f] Length=144 Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 66/125 (53%), Positives = 82/125 (66%), Gaps = 4/125 (3%) Query 23 YRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTYARDGDAYLIVASKGGDPRSPGW 82 YR T G +G+ G +LLL TTG ++ QPRT++L +ARDGD YL+VASKGG P P W Sbjct 22 YRETGGEVGYEWNGVH-TLLLTTTGRRSGQPRTSALIFARDGDDYLVVASKGGAPEHPEW 80 Query 83 YHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQIVNENNANRYTNYQSRTSRPIP 142 Y NL ANP EI V +RF T + D + ARLW+IV + N Y YQ+RT RPIP Sbjct 81 YRNLLANPAAEIQVQAERF--TVRAATASDAEKARLWEIVTKVWPN-YDAYQTRTERPIP 137 Query 143 VVVLT 147 VVVL+ Sbjct 138 VVVLS 142 >gi|111026879|ref|YP_708857.1| hypothetical protein RHA1_ro11052 [Rhodococcus jostii RHA1] gi|110825418|gb|ABH00699.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=155 Score = 114 bits (285), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 59/136 (44%), Positives = 85/136 (63%), Gaps = 3/136 (2%) Query 14 QLLRLHDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTYARDGDAYLIVASK 73 ++L LH +YR + GRIGHR +LL+ GA++ RT+ L YA+DG ++VASK Sbjct 22 RMLALHTVVYRASGGRIGHRFLHLKQTLLIDHVGARSGTHRTSGLVYAKDGANLILVASK 81 Query 74 GGDPRSPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQIVNENNANRYTNY 133 GG PR+P W+HNL+ANPD + VG +R V A+ Q + + RLW + + + + Y Sbjct 82 GGHPRNPDWFHNLRANPDTTVQVGTERRTVHARVAQQDERE--RLWALAIDVHPG-FAAY 138 Query 134 QSRTSRPIPVVVLTRR 149 Q+RT R IP+VVL R Sbjct 139 QARTDREIPLVVLEPR 154 >gi|312197940|ref|YP_004018001.1| hypothetical protein FraEuI1c_4130 [Frankia sp. EuI1c] gi|311229276|gb|ADP82131.1| hypothetical protein FraEuI1c_4130 [Frankia sp. EuI1c] Length=144 Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 63/125 (51%), Positives = 82/125 (66%), Gaps = 4/125 (3%) Query 23 YRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTYARDGDAYLIVASKGGDPRSPGW 82 YR T+G +G+ G LLL TTG +T +PRT++L +A+DGD YL+VAS+GG P+ P W Sbjct 22 YRETDGEVGYEWNGVR-ILLLTTTGRRTGEPRTSALIFAQDGDDYLVVASQGGAPQHPNW 80 Query 83 YHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQIVNENNANRYTNYQSRTSRPIP 142 YHNL A P+ EI V +R V A + + RLW+IV + N Y YQSRT RPIP Sbjct 81 YHNLLATPEAEIQVRAERLTVRATTAT--EAEKPRLWEIVTKVWPN-YDTYQSRTRRPIP 137 Query 143 VVVLT 147 VVVL+ Sbjct 138 VVVLS 142 >gi|312198241|ref|YP_004018302.1| hypothetical protein FraEuI1c_4438 [Frankia sp. EuI1c] gi|311229577|gb|ADP82432.1| hypothetical protein FraEuI1c_4438 [Frankia sp. EuI1c] Length=144 Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 65/129 (51%), Positives = 81/129 (63%), Gaps = 4/129 (3%) Query 19 HDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTYARDGDAYLIVASKGGDPR 78 H Y+ T+G +G+ G P +LLL T G +T RTT+L +ARDGD YL+VAS GG PR Sbjct 18 HIHAYQDTDGEVGYLWNGVP-TLLLTTVGRRTGARRTTALIFARDGDDYLVVASTGGSPR 76 Query 79 SPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQIVNENNANRYTNYQSRTS 138 P WY NL ANP VEI V + V A+ D + RLW+IV + N Y YQSRT+ Sbjct 77 DPDWYLNLSANPAVEIQVRAQHLQVVARTAS--DDEKPRLWKIVTDVWPN-YDLYQSRTT 133 Query 139 RPIPVVVLT 147 R IPVVVL+ Sbjct 134 RRIPVVVLS 142 >gi|288920153|ref|ZP_06414470.1| hypothetical protein FrEUN1fDRAFT_4168 [Frankia sp. EUN1f] gi|288348484|gb|EFC82744.1| hypothetical protein FrEUN1fDRAFT_4168 [Frankia sp. EUN1f] Length=144 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 63/129 (49%), Positives = 79/129 (62%), Gaps = 4/129 (3%) Query 19 HDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTYARDGDAYLIVASKGGDPR 78 H A YR T G +G+ G P +LLL T G ++ QPRT++L + RDG YL+VASKGG P Sbjct 18 HVARYRETGGEVGYEWNGVP-TLLLTTVGRRSGQPRTSALIFGRDGADYLVVASKGGSPA 76 Query 79 SPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQIVNENNANRYTNYQSRTS 138 +P WY NL EI V + V A+ D + RLW+I+ E N Y YQ+RTS Sbjct 77 APQWYLNLTDQSAAEIQVRAEHLSVVARTAS--DEEKPRLWKIMTEVWPN-YDAYQTRTS 133 Query 139 RPIPVVVLT 147 RPIPVVVLT Sbjct 134 RPIPVVVLT 142 >gi|330466024|ref|YP_004403767.1| hypothetical protein VAB18032_10245 [Verrucosispora maris AB-18-032] gi|328808995|gb|AEB43167.1| hypothetical protein VAB18032_10245 [Verrucosispora maris AB-18-032] Length=145 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 57/126 (46%), Positives = 78/126 (62%), Gaps = 3/126 (2%) Query 23 YRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTYARDGDAYLIVASKGGDPRSPGW 82 Y T+G GH +LLL T G ++ + R T+L Y RDG+AY+IVAS+GGDPR P W Sbjct 22 YVATDGDKGHEWRPGVFTLLLTTRGRRSGKLRRTALIYGRDGEAYVIVASQGGDPRHPAW 81 Query 83 YHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQIVNENNANRYTNYQSRTSRPIP 142 Y NL+A+P ++ VG RF A+ P + ARLW ++ + Y +YQ++T R IP Sbjct 82 YLNLEADPTAQVQVGADRFTARARTATPEEK--ARLWPMMTDIWPA-YDDYQAKTERDIP 138 Query 143 VVVLTR 148 VVVL R Sbjct 139 VVVLER 144 >gi|312197986|ref|YP_004018047.1| hypothetical protein FraEuI1c_4178 [Frankia sp. EuI1c] gi|311229322|gb|ADP82177.1| hypothetical protein FraEuI1c_4178 [Frankia sp. EuI1c] Length=154 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 60/130 (47%), Positives = 74/130 (57%), Gaps = 4/130 (3%) Query 19 HDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTYARDGDAYLIVASKGGDPR 78 H Y T+G +GH G LLL T G +T Q R L Y RDGD YL++AS+GG P Sbjct 28 HVERYLQTDGAVGHAWNGVT-CLLLWTVGRRTGQRRVNPLIYGRDGDDYLVIASQGGAPN 86 Query 79 SPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQIVNENNANRYTNYQSRTS 138 PGWYHNL A P+VE+ V RF A+ + + D RLW ++ N Y Y RT+ Sbjct 87 HPGWYHNLLAQPEVEVQVEADRFTARARTAEGEERD--RLWTLMAARWPN-YDEYTKRTT 143 Query 139 RPIPVVVLTR 148 R IPVVVL R Sbjct 144 RRIPVVVLER 153 >gi|158312480|ref|YP_001504988.1| hypothetical protein Franean1_0623 [Frankia sp. EAN1pec] gi|158107885|gb|ABW10082.1| conserved hypothetical protein [Frankia sp. EAN1pec] Length=144 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 60/129 (47%), Positives = 79/129 (62%), Gaps = 4/129 (3%) Query 19 HDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTYARDGDAYLIVASKGGDPR 78 H A YR T+G +G+ G P +LLL T G ++ + RT++L +ARDGD YL+VAS GG P+ Sbjct 18 HIARYRETDGEVGYLWNGVP-TLLLTTVGRQSGEKRTSALIFARDGDDYLVVASTGGAPK 76 Query 79 SPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQIVNENNANRYTNYQSRTS 138 P WY NL A P+ EI V V + + + RLW+IV + N Y YQ+RT Sbjct 77 HPAWYWNLTARPEAEIQVRGLHLPVVGRTAS--EDEKPRLWKIVTASWPN-YDVYQTRTD 133 Query 139 RPIPVVVLT 147 R IPVVVLT Sbjct 134 RVIPVVVLT 142 >gi|288916088|ref|ZP_06410469.1| hypothetical protein FrEUN1fDRAFT_0162 [Frankia sp. EUN1f] gi|288352484|gb|EFC86680.1| hypothetical protein FrEUN1fDRAFT_0162 [Frankia sp. EUN1f] Length=151 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 57/126 (46%), Positives = 74/126 (59%), Gaps = 4/126 (3%) Query 23 YRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTYARDGDAYLIVASKGGDPRSPGW 82 Y T G GH G L+L TTG +T Q R T L Y +DGD ++++AS+GG P PGW Sbjct 29 YVETGGAAGHSWNGVT-CLVLWTTGRRTGQRRATPLIYTQDGDRFVVIASQGGAPAHPGW 87 Query 83 YHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQIVNENNANRYTNYQSRTSRPIP 142 YHNL A P VE+ V RF TA+ + ++ RLW ++ + N Y Y RT+R IP Sbjct 88 YHNLLAQPKVEVQVLADRFTATARTAE--GAEHERLWSLMAQRWPN-YNEYTKRTTRRIP 144 Query 143 VVVLTR 148 VVVL R Sbjct 145 VVVLER 150 >gi|158317142|ref|YP_001509650.1| hypothetical protein Franean1_5388 [Frankia sp. EAN1pec] gi|158112547|gb|ABW14744.1| conserved hypothetical protein [Frankia sp. EAN1pec] Length=144 Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 58/125 (47%), Positives = 73/125 (59%), Gaps = 4/125 (3%) Query 23 YRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTYARDGDAYLIVASKGGDPRSPGW 82 YR T+G +G+ + P LLL TTG +T + RTT L + RD D YL++AS GG PR P W Sbjct 22 YRETDGEVGY-LWNTVPILLLTTTGRRTGEARTTPLIFGRDDDDYLVIASTGGSPRHPAW 80 Query 83 YHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQIVNENNANRYTNYQSRTSRPIP 142 Y NL ANP EI + VT + + RLW+I+ + N Y YQ RT R IP Sbjct 81 YLNLTANPRAEIQIRADHIAVTTRTATEQEK--PRLWRIMADIWPN-YNVYQRRTERVIP 137 Query 143 VVVLT 147 VVVLT Sbjct 138 VVVLT 142 >gi|317507752|ref|ZP_07965456.1| hypothetical protein HMPREF9336_01828 [Segniliparus rugosus ATCC BAA-974] gi|316253951|gb|EFV13317.1| hypothetical protein HMPREF9336_01828 [Segniliparus rugosus ATCC BAA-974] Length=150 Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 54/129 (42%), Positives = 75/129 (59%), Gaps = 4/129 (3%) Query 19 HDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTYARDGDAYLIVASKGGDPR 78 H A+Y + G +GH +PG P+L+LH TGAK+ + L Y D +++VAS GG P+ Sbjct 21 HVAVYELSRGLVGHWMPGMAPALILHHTGAKSGKQYKIPLNYFVSNDDFVVVASNGGHPK 80 Query 79 SPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQIVNENNANRYTNYQSRTS 138 +P W+ NLKANPD I VG + VTA+ + + A W + A Y YQ RT Sbjct 81 NPNWFWNLKANPDTRIRVGLRELRVTAR--EATAEERADWWPKIATTGA--YAIYQRRTK 136 Query 139 RPIPVVVLT 147 R IP+VVL+ Sbjct 137 RTIPLVVLS 145 >gi|271966731|ref|YP_003340927.1| hypothetical protein Sros_5424 [Streptosporangium roseum DSM 43021] gi|270509906|gb|ACZ88184.1| hypothetical protein Sros_5424 [Streptosporangium roseum DSM 43021] Length=311 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 58/126 (47%), Positives = 72/126 (58%), Gaps = 4/126 (3%) Query 23 YRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTYARDGDAYLIVASKGGDPRSPGW 82 +R G++G G LLL TTGAK+ Q T L Y RDGD LIVAS G PR P W Sbjct 13 FRANGGKVGGPFEGGD-LLLLTTTGAKSGQEHTIPLGYVRDGDLLLIVASAAGAPRHPAW 71 Query 83 YHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQIVNENNANRYTNYQSRTSRPIP 142 YHNL A+P V + VG + F A P + RL++ V A Y +YQ+RT+R +P Sbjct 72 YHNLLAHPMVRVEVGTEVFAAIAVPAE--GARRERLFEHVV-RTAPGYADYQTRTTRTLP 128 Query 143 VVVLTR 148 VVVL R Sbjct 129 VVVLER 134 >gi|41408280|ref|NP_961116.1| hypothetical protein MAP2182c [Mycobacterium avium subsp. paratuberculosis K-10] gi|3928796|gb|AAC79686.1| unknown [Mycobacterium avium subsp. paratuberculosis] gi|41396636|gb|AAS04499.1| hypothetical protein MAP_2182c [Mycobacterium avium subsp. paratuberculosis K-10] Length=144 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 59/129 (46%), Positives = 72/129 (56%), Gaps = 4/129 (3%) Query 19 HDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTYARDGDAYLIVASKGGDPR 78 H YR T G G+ G P LLL TG +T + T++L + RDGD YL+VAS GG PR Sbjct 18 HVRAYRETGGETGYLWNGVP-ILLLTVTGRRTGRALTSALIFGRDGDDYLVVASMGGAPR 76 Query 79 SPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQIVNENNANRYTNYQSRTS 138 P WY NL+ANP I V V A+ + R W+I+ + N Y YQSRT Sbjct 77 HPSWYLNLQANPAAGIQVQADELAVVARTASAAEK--PRFWKIMTDVWPN-YDVYQSRTD 133 Query 139 RPIPVVVLT 147 R IPVVVLT Sbjct 134 RDIPVVVLT 142 >gi|300790166|ref|YP_003770457.1| hypothetical protein AMED_8359 [Amycolatopsis mediterranei U32] gi|299799680|gb|ADJ50055.1| conserved hypothetical protein [Amycolatopsis mediterranei U32] gi|340531847|gb|AEK47052.1| hypothetical protein RAM_42925 [Amycolatopsis mediterranei S699] Length=140 Score = 97.1 bits (240), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 53/131 (41%), Positives = 73/131 (56%), Gaps = 9/131 (6%) Query 21 AIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTYARDGDAYLIVASKGGDPRSP 80 A +R G++G G LLL T GAK+ + R + L Y DGD Y+I AS GG P++P Sbjct 16 AEFRANEGKVGGMFDG-KNVLLLTTIGAKSGEERLSPLVYTLDGDRYVIAASMGGAPKNP 74 Query 81 GWYHNLKANPDVEINVGPKRFGVTAKPV---QPHDPDYARLWQIVNENNANRYTNYQSRT 137 WYHNL ANP V + VG ++F TA + D YA + +A + Y+++T Sbjct 75 AWYHNLVANPKVTVEVGTEKFEATATVIADRAERDRLYAGMVA-----HAEGFAEYETKT 129 Query 138 SRPIPVVVLTR 148 R IP+VVL R Sbjct 130 DRLIPIVVLER 140 >gi|111220752|ref|YP_711546.1| hypothetical protein FRAAL1295 [Frankia alni ACN14a] gi|111148284|emb|CAJ59956.1| conserved hypothetical protein [Frankia alni ACN14a] Length=149 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/129 (45%), Positives = 71/129 (56%), Gaps = 8/129 (6%) Query 21 AIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTYARDGDAYLIVASKGGDPRSP 80 A +R T G + G P LLLHTTGA+T PR L YA DGD YL+ AS GG PR P Sbjct 22 ADFRATGGHPDGQFAGTP-ILLLHTTGARTGAPRINPLVYAEDGDRYLVFASNGGAPRDP 80 Query 81 GWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPD--YARLWQIVNENNANRYTNYQSRTS 138 WYHNLKA+P V+I + + V V + D YAR + N + Y+++ Sbjct 81 AWYHNLKAHPGVKIEIDTRVLDVHVDEVTGAERDAVYAR-----HAANYPAFAEYEAKAG 135 Query 139 RPIPVVVLT 147 R IPVV LT Sbjct 136 RKIPVVALT 144 >gi|336458124|gb|EGO37107.1| deazaflavin-dependent nitroreductase family protein [Mycobacterium avium subsp. paratuberculosis S397] Length=144 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/129 (46%), Positives = 71/129 (56%), Gaps = 4/129 (3%) Query 19 HDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTYARDGDAYLIVASKGGDPR 78 H YR T G G+ G P LLL TG +T + T++L RDGD YL+VAS GG PR Sbjct 18 HVRAYRETGGETGYLWNGVP-ILLLTVTGRRTGRALTSALILGRDGDDYLVVASMGGAPR 76 Query 79 SPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQIVNENNANRYTNYQSRTS 138 P WY NL+ANP I V V A+ + R W+I+ + N Y YQSRT Sbjct 77 HPSWYLNLQANPAAGIQVQADELAVVARTASAAEK--PRFWKIMTDVWPN-YDVYQSRTD 133 Query 139 RPIPVVVLT 147 R IPVVVLT Sbjct 134 RDIPVVVLT 142 >gi|288920357|ref|ZP_06414668.1| hypothetical protein FrEUN1fDRAFT_4366 [Frankia sp. EUN1f] gi|288348234|gb|EFC82500.1| hypothetical protein FrEUN1fDRAFT_4366 [Frankia sp. EUN1f] Length=151 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 56/128 (44%), Positives = 76/128 (60%), Gaps = 7/128 (5%) Query 25 GTNGRIGHRIPGA----PPSLLLHTTGAKTSQPRTTSLTYARDGDAYLIVASKGGDPRSP 80 G +G + + I G+ P+LLL T G ++ +PR T L Y RDG+ Y+IVASK G P P Sbjct 26 GADGHLWYGIDGSFTQGAPTLLLTTRGRRSGKPRRTPLIYGRDGNDYVIVASKAGFPEHP 85 Query 81 GWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQIVNENNANRYTNYQSRTSRP 140 WY NL A+P+ E+ V +RF A+ +P + ARLW +V Y YQSRT R Sbjct 86 LWYLNLLAHPEAELQVEAERFPANARVAEPAEK--ARLW-LVMTALWPEYDAYQSRTDRD 142 Query 141 IPVVVLTR 148 IP+V+L R Sbjct 143 IPIVLLER 150 >gi|145593642|ref|YP_001157939.1| hypothetical protein Strop_1090 [Salinispora tropica CNB-440] gi|145302979|gb|ABP53561.1| hypothetical protein Strop_1090 [Salinispora tropica CNB-440] Length=145 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/130 (45%), Positives = 75/130 (58%), Gaps = 3/130 (2%) Query 19 HDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTYARDGDAYLIVASKGGDPR 78 H A Y T+G GH +LLL T G ++ R T+L Y RDGDAYL+VAS+GG P Sbjct 18 HVARYVRTDGADGHEWRPGVFTLLLTTRGRRSGSLRRTALIYGRDGDAYLLVASRGGTPE 77 Query 79 SPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQIVNENNANRYTNYQSRTS 138 P WY NL +P VE+ VG +RF A+ P + R+W + + Y +YQ+RT Sbjct 78 HPSWYLNLLDDPRVEVQVGAERFTARARVASPAEK--PRMWATMAAIWPD-YDDYQTRTD 134 Query 139 RPIPVVVLTR 148 R IPVVVL R Sbjct 135 REIPVVVLER 144 >gi|298248690|ref|ZP_06972495.1| conserved hypothetical protein [Ktedonobacter racemifer DSM 44963] gi|297551349|gb|EFH85215.1| conserved hypothetical protein [Ktedonobacter racemifer DSM 44963] Length=141 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 53/128 (42%), Positives = 75/128 (59%), Gaps = 8/128 (6%) Query 23 YRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTYARDGDAYLIVASKGGDPRSPGW 82 +R NG++G A LLL T GAK+ Q RTT + Y DGD +I+ASKGG P +P W Sbjct 15 FRSNNGKVGGYFANATL-LLLTTVGAKSGQSRTTPVAYVTDGDRLVIIASKGGAPSNPDW 73 Query 83 YHNLKANPDVEINVGPKRFGV-TAKPVQPHDPD-YARLWQIVNENNANRYTNYQSRTSRP 140 Y+NL ANP + VG +RF V T+ +P YA++ +++ + Y+ +TSR Sbjct 74 YYNLLANPVATVEVGTERFQVRTSSTAEPERSQLYAKMVEMM-----PGFAEYERKTSRK 128 Query 141 IPVVVLTR 148 IPV+ L R Sbjct 129 IPVLTLER 136 >gi|302530438|ref|ZP_07282780.1| conserved hypothetical protein [Streptomyces sp. AA4] gi|302439333|gb|EFL11149.1| conserved hypothetical protein [Streptomyces sp. AA4] Length=134 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 53/129 (42%), Positives = 71/129 (56%), Gaps = 9/129 (6%) Query 23 YRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTYARDGDAYLIVASKGGDPRSPGW 82 +R G++G G LL HT GAK+ + R + L Y DGD +IVASKGG +P W Sbjct 12 FRANAGKVGGMFEGKNMVLLTHT-GAKSGKQRVSPLVYTTDGDRIVIVASKGGADTNPDW 70 Query 83 YHNLKANPDVEINVGPKRFGVTAKPV---QPHDPDYARLWQIVNENNANRYTNYQSRTSR 139 YHNL ANP V + +G +F TAK V D YA++ + +A + Y+ +T R Sbjct 71 YHNLVANPSVTVEIGTDKFPATAKLVTDRAERDRLYAKMVE-----HAEGFAEYEKKTER 125 Query 140 PIPVVVLTR 148 IPV VL R Sbjct 126 LIPVFVLER 134 >gi|226364186|ref|YP_002781968.1| hypothetical protein ROP_47760 [Rhodococcus opacus B4] gi|226242675|dbj|BAH53023.1| hypothetical protein [Rhodococcus opacus B4] Length=169 Score = 94.4 bits (233), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 59/152 (39%), Positives = 85/152 (56%), Gaps = 10/152 (6%) Query 4 SRWLERHVGVQLLRLHDAIYRGTNGRIGHR------IPGAPPSLLLHTTGAKTSQPRTTS 57 SRW + + +++ +YR T GR+G + P P LL TTG K+ PR + Sbjct 22 SRWTVSFIK-WMSKINVVLYRRTGGRLGSKWRVGSAFPRGLPVCLLTTTGRKSGDPRISP 80 Query 58 LTYARDGDAYLIVASKGGDPRSPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYAR 117 L + DGD ++VAS+GG P+ P WY NL+ANP V + V + +TA+ P + AR Sbjct 81 LLFLEDGDRIVLVASQGGLPKHPMWYLNLRANPQVTVQVKSRVRPMTAQVADPG--ERAR 138 Query 118 LWQIVNENNANRYTNYQSRTSRPIPVVVLTRR 149 LW + + A+ + NYQ+ T R IPVVV T R Sbjct 139 LWPRLVDMYAD-FDNYQAWTDRTIPVVVCTPR 169 >gi|111021649|ref|YP_704621.1| hypothetical protein RHA1_ro04677 [Rhodococcus jostii RHA1] gi|110821179|gb|ABG96463.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=161 Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 56/139 (41%), Positives = 79/139 (57%), Gaps = 9/139 (6%) Query 17 RLHDAIYRGTNGRIGHR------IPGAPPSLLLHTTGAKTSQPRTTSLTYARDGDAYLIV 70 +++ +YR T GR+G + P P LL TTG K+ +PR + L + DGD ++V Sbjct 26 KINVVLYRRTGGRLGSKWRVGSAFPRGLPVCLLTTTGRKSGEPRISPLLFLEDGDRIILV 85 Query 71 ASKGGDPRSPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLWQIVNENNANRY 130 AS+GG P+ P WY NL+ANPDV + V + +TA P + ARLW + + + Sbjct 86 ASQGGLPKHPMWYLNLRANPDVTVQVKSRVRPMTAHVADPE--ERARLWPRLVAMYPD-F 142 Query 131 TNYQSRTSRPIPVVVLTRR 149 NYQ+ T R IPVVV T R Sbjct 143 DNYQAWTDRTIPVVVCTPR 161 >gi|312138188|ref|YP_004005524.1| hypothetical protein REQ_07220 [Rhodococcus equi 103S] gi|311887527|emb|CBH46839.1| conserved hypothetical protein [Rhodococcus equi 103S] Length=156 Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 55/152 (37%), Positives = 84/152 (56%), Gaps = 17/152 (11%) Query 1 MDISRWLERHVGVQLLRLHDAIYRGTNGRIGHR------IPGAPPSLLLHTTGAKTSQPR 54 +DI +W+ + + +YR T GR+G + P P LL TTG K+ QPR Sbjct 15 VDIIKWMSKT--------NVKLYRATGGRLGGKWRVGSAFPWGIPVCLLTTTGRKSGQPR 66 Query 55 TTSLTYARDGDAYLIVASKGGDPRSPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPD 114 + L + DGD ++VAS+GG P++P WY N++ANP+V I + + + A+ D + Sbjct 67 VSPLLFLEDGDRVILVASQGGLPKNPMWYLNIRANPEVTIQIKSRIRTMRARVA--TDEE 124 Query 115 YARLWQIVNENNANRYTNYQSRTSRPIPVVVL 146 A LW + + A+ + NYQS T R IPVV+ Sbjct 125 RAELWPRLVDMYAD-FDNYQSWTDRQIPVVIC 155 Lambda K H 0.318 0.136 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 130023393564 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40