BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1267c
Length=388
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608407|ref|NP_215783.1| transcriptional regulatory protein ... 791 0.0
gi|339631335|ref|YP_004722977.1| transcriptional regulator [Myco... 790 0.0
gi|289442705|ref|ZP_06432449.1| transcriptional regulator embR [... 787 0.0
gi|308231799|ref|ZP_07413772.2| transcriptional regulator embR [... 779 0.0
gi|183984126|ref|YP_001852417.1| transcriptional regulatory prot... 699 0.0
gi|118619217|ref|YP_907549.1| transcriptional regulatory protein... 693 0.0
gi|240173400|ref|ZP_04752058.1| transcriptional regulatory prote... 653 0.0
gi|289749819|ref|ZP_06509197.1| transcriptional regulator embR [... 632 5e-179
gi|342858086|ref|ZP_08714742.1| transcriptional regulator [Mycob... 590 2e-166
gi|118465098|ref|YP_880660.1| transcriptional regulator [Mycobac... 555 4e-156
gi|41408601|ref|NP_961437.1| EmbR_2 [Mycobacterium avium subsp. ... 555 4e-156
gi|254774296|ref|ZP_05215812.1| putative transcriptional regulat... 554 8e-156
gi|336458611|gb|EGO37578.1| DNA-binding transcriptional activato... 553 2e-155
gi|183983526|ref|YP_001851817.1| transcriptional regulatory prot... 450 2e-124
gi|118467005|ref|YP_879519.1| EmbR protein [Mycobacterium avium ... 446 2e-123
gi|124491183|gb|ABN12926.1| EmbR [Mycobacterium tuberculosis] 446 3e-123
gi|254773284|ref|ZP_05214800.1| EmbR protein [Mycobacterium aviu... 444 1e-122
gi|336461580|gb|EGO40446.1| DNA-binding transcriptional activato... 442 4e-122
gi|41406328|ref|NP_959164.1| EmbR_1 [Mycobacterium avium subsp. ... 441 7e-122
gi|124491181|gb|ABN12925.1| EmbR [Mycobacterium tuberculosis] 440 2e-121
gi|342860050|ref|ZP_08716702.1| EmbR protein [Mycobacterium colo... 439 3e-121
gi|254365948|ref|ZP_04981993.1| hypothetical protein TBHG_03263 ... 432 3e-119
gi|15842920|ref|NP_337957.1| AfsR/DnrI/RedD family transcription... 432 5e-119
gi|124491171|gb|ABN12920.1| EmbR [Mycobacterium tuberculosis] 426 2e-117
gi|306969428|ref|ZP_07482089.1| putative FHA domain protein [Myc... 416 3e-114
gi|124491163|gb|ABN12916.1| EmbR [Mycobacterium tuberculosis] 415 6e-114
gi|124491177|gb|ABN12923.1| EmbR [Mycobacterium tuberculosis] 411 1e-112
gi|111017531|ref|YP_700503.1| EmbR family transcriptional regula... 405 7e-111
gi|124491169|gb|ABN12919.1| EmbR [Mycobacterium tuberculosis] 403 3e-110
gi|124491175|gb|ABN12922.1| EmbR [Mycobacterium tuberculosis] 401 1e-109
gi|124491179|gb|ABN12924.1| EmbR [Mycobacterium tuberculosis] 395 5e-108
gi|124491173|gb|ABN12921.1| EmbR [Mycobacterium tuberculosis] 391 1e-106
gi|124491165|gb|ABN12917.1| EmbR [Mycobacterium tuberculosis] 384 2e-104
gi|124491167|gb|ABN12918.1| EmbR [Mycobacterium tuberculosis] 369 4e-100
gi|308377303|ref|ZP_07668478.1| transcriptional regulatory prote... 362 8e-98
gi|308371311|ref|ZP_07667133.1| transcriptional regulatory prote... 362 8e-98
gi|111026922|ref|YP_708900.1| transcriptional regulator [Rhodoco... 337 2e-90
gi|124491161|gb|ABN12915.1| EmbR [Mycobacterium tuberculosis] 332 8e-89
gi|54027355|ref|YP_121597.1| putative transcriptional regulator ... 317 2e-84
gi|183980951|ref|YP_001849242.1| transcriptional regulatory prot... 311 8e-83
gi|148824317|ref|YP_001289071.1| transcriptional regulator [Myco... 298 9e-79
gi|15842697|ref|NP_337734.1| AfsR/DnrI/RedD family transcription... 298 1e-78
gi|15610261|ref|NP_217640.1| transcriptional regulatory protein ... 297 2e-78
gi|121639005|ref|YP_979229.1| putative transcriptional regulator... 294 2e-77
gi|296138442|ref|YP_003645685.1| SARP family transcriptional reg... 271 1e-70
gi|167970210|ref|ZP_02552487.1| transcriptional regulator, AfsR/... 262 8e-68
gi|258652403|ref|YP_003201559.1| SARP family transcriptional reg... 258 8e-67
gi|300788234|ref|YP_003768525.1| SARP family transcriptional reg... 173 4e-41
gi|271962756|ref|YP_003336952.1| SARP family transcriptional reg... 171 1e-40
gi|256374538|ref|YP_003098198.1| SARP family transcriptional reg... 167 3e-39
>gi|15608407|ref|NP_215783.1| transcriptional regulatory protein EMBR [Mycobacterium tuberculosis
H37Rv]
gi|15840713|ref|NP_335750.1| AfsR/DnrI/RedD family transcriptional regulator [Mycobacterium
tuberculosis CDC1551]
gi|31792459|ref|NP_854952.1| transcriptional regulatory protein EMBR [Mycobacterium bovis
AF2122/97]
48 more sequence titles
Length=388
Score = 791 bits (2042), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/388 (100%), Positives = 388/388 (100%), Gaps = 0/388 (0%)
Query 1 MAGSATVEKRLDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALW 60
MAGSATVEKRLDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALW
Sbjct 1 MAGSATVEKRLDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALW 60
Query 61 EEWPPSGARASIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKT 120
EEWPPSGARASIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKT
Sbjct 61 EEWPPSGARASIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKT 120
Query 121 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEA 180
AGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEA
Sbjct 121 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEA 180
Query 181 EIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLG 240
EIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLG
Sbjct 181 EIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLG 240
Query 241 IDPGPTLRALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRG 300
IDPGPTLRALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRG
Sbjct 241 IDPGPTLRALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRG 300
Query 301 YPLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSA 360
YPLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSA
Sbjct 301 YPLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSA 360
Query 361 VTLNDGDHIRICDHEFTFQISAGTHGGT 388
VTLNDGDHIRICDHEFTFQISAGTHGGT
Sbjct 361 VTLNDGDHIRICDHEFTFQISAGTHGGT 388
>gi|339631335|ref|YP_004722977.1| transcriptional regulator [Mycobacterium africanum GM041182]
gi|339330691|emb|CCC26360.1| putative transcriptional regulatory protein EMBR [Mycobacterium
africanum GM041182]
Length=388
Score = 790 bits (2040), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/388 (99%), Positives = 388/388 (100%), Gaps = 0/388 (0%)
Query 1 MAGSATVEKRLDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALW 60
MAGSATVEKRLDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALW
Sbjct 1 MAGSATVEKRLDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALW 60
Query 61 EEWPPSGARASIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKT 120
EEWPPSGARASIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKT
Sbjct 61 EEWPPSGARASIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKT 120
Query 121 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEA 180
AGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEA
Sbjct 121 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEA 180
Query 181 EIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLG 240
EIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADD+G
Sbjct 181 EIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDVG 240
Query 241 IDPGPTLRALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRG 300
IDPGPTLRALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRG
Sbjct 241 IDPGPTLRALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRG 300
Query 301 YPLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSA 360
YPLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSA
Sbjct 301 YPLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSA 360
Query 361 VTLNDGDHIRICDHEFTFQISAGTHGGT 388
VTLNDGDHIRICDHEFTFQISAGTHGGT
Sbjct 361 VTLNDGDHIRICDHEFTFQISAGTHGGT 388
>gi|289442705|ref|ZP_06432449.1| transcriptional regulator embR [Mycobacterium tuberculosis T46]
gi|289569276|ref|ZP_06449503.1| transcriptional regulator embR [Mycobacterium tuberculosis T17]
gi|289753343|ref|ZP_06512721.1| transcriptional regulatory protein embR [Mycobacterium tuberculosis
EAS054]
gi|289415624|gb|EFD12864.1| transcriptional regulator embR [Mycobacterium tuberculosis T46]
gi|289543030|gb|EFD46678.1| transcriptional regulator embR [Mycobacterium tuberculosis T17]
gi|289693930|gb|EFD61359.1| transcriptional regulatory protein embR [Mycobacterium tuberculosis
EAS054]
Length=388
Score = 787 bits (2033), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/388 (99%), Positives = 387/388 (99%), Gaps = 0/388 (0%)
Query 1 MAGSATVEKRLDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALW 60
MAGSATVEKRLDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALW
Sbjct 1 MAGSATVEKRLDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALW 60
Query 61 EEWPPSGARASIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKT 120
EEWPPSGARASIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNT DLGRFVAEKT
Sbjct 61 EEWPPSGARASIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTYDLGRFVAEKT 120
Query 121 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEA 180
AGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEA
Sbjct 121 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEA 180
Query 181 EIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLG 240
EIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLG
Sbjct 181 EIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLG 240
Query 241 IDPGPTLRALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRG 300
IDPGPTLRALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRG
Sbjct 241 IDPGPTLRALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRG 300
Query 301 YPLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSA 360
YPLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSA
Sbjct 301 YPLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSA 360
Query 361 VTLNDGDHIRICDHEFTFQISAGTHGGT 388
VTLNDGDHIRICDHEFTFQISAGTHGGT
Sbjct 361 VTLNDGDHIRICDHEFTFQISAGTHGGT 388
>gi|308231799|ref|ZP_07413772.2| transcriptional regulator embR [Mycobacterium tuberculosis SUMu001]
gi|308370010|ref|ZP_07419989.2| transcriptional regulator embR [Mycobacterium tuberculosis SUMu002]
gi|308370677|ref|ZP_07422309.2| transcriptional regulator embR [Mycobacterium tuberculosis SUMu003]
22 more sequence titles
Length=382
Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/382 (99%), Positives = 382/382 (100%), Gaps = 0/382 (0%)
Query 7 VEKRLDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPS 66
+EKRLDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPS
Sbjct 1 MEKRLDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPS 60
Query 67 GARASIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGVHAA 126
GARASIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGVHAA
Sbjct 61 GARASIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGVHAA 120
Query 127 AAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGR 186
AAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGR
Sbjct 121 AAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGR 180
Query 187 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246
ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT
Sbjct 181 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 240
Query 247 LRALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAA 306
LRALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAA
Sbjct 241 LRALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAA 300
Query 307 ATRIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSAVTLNDG 366
ATRIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSAVTLNDG
Sbjct 301 ATRIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSAVTLNDG 360
Query 367 DHIRICDHEFTFQISAGTHGGT 388
DHIRICDHEFTFQISAGTHGGT
Sbjct 361 DHIRICDHEFTFQISAGTHGGT 382
>gi|183984126|ref|YP_001852417.1| transcriptional regulatory protein EmbR [Mycobacterium marinum
M]
gi|183177452|gb|ACC42562.1| transcriptional regulatory protein EmbR [Mycobacterium marinum
M]
Length=386
Score = 699 bits (1804), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/382 (88%), Positives = 362/382 (95%), Gaps = 0/382 (0%)
Query 1 MAGSATVEKRLDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALW 60
MAGSA V+KRL+FGLLGPL+MTIDG VP GTPKQRAVLAMLVINRNRPVGVD+LITALW
Sbjct 1 MAGSAMVDKRLEFGLLGPLEMTIDGELVPLGTPKQRAVLAMLVINRNRPVGVDSLITALW 60
Query 61 EEWPPSGARASIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKT 120
EEWPP+GARASIHSYVSNLRKLL GAG+DPR +LAAAPPGYRLSIPD+TCDLGRF+AEKT
Sbjct 61 EEWPPAGARASIHSYVSNLRKLLSGAGVDPRAMLAAAPPGYRLSIPDSTCDLGRFIAEKT 120
Query 121 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEA 180
AGVHAAAAG+FEQAS+HLS AL +WRGPVLDDLRDFQFV+ FATALVEDK+LAHTAKAEA
Sbjct 121 AGVHAAAAGKFEQASQHLSRALTQWRGPVLDDLRDFQFVDAFATALVEDKILAHTAKAEA 180
Query 181 EIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLG 240
EIACGRA+AVI ELEALT EHPYREPLWTQLITAYYL+DRQSDALGAYRRVKTTLA+DLG
Sbjct 181 EIACGRAAAVITELEALTAEHPYREPLWTQLITAYYLTDRQSDALGAYRRVKTTLAEDLG 240
Query 241 IDPGPTLRALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRG 300
IDPGPTLRALNERILRQ+PLDAK +AK+TA GTVTVLDQRTM SGQQAVAYLH IASG
Sbjct 241 IDPGPTLRALNERILRQEPLDAKMNAKSTAVGTVTVLDQRTMVSGQQAVAYLHTIASGHD 300
Query 301 YPLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSA 360
YP++ AATRIGRL DNDIVLDSANVSRHHAVI+DTGTNY+INDLRSSNGVHVQH+RIR A
Sbjct 301 YPIRTAATRIGRLSDNDIVLDSANVSRHHAVIIDTGTNYIINDLRSSNGVHVQHQRIRGA 360
Query 361 VTLNDGDHIRICDHEFTFQISA 382
VTLNDGDHIRICDHEFTFQ++A
Sbjct 361 VTLNDGDHIRICDHEFTFQLTA 382
>gi|118619217|ref|YP_907549.1| transcriptional regulatory protein EmbR [Mycobacterium ulcerans
Agy99]
gi|118571327|gb|ABL06078.1| transcriptional regulatory protein EmbR [Mycobacterium ulcerans
Agy99]
Length=386
Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/382 (87%), Positives = 360/382 (95%), Gaps = 0/382 (0%)
Query 1 MAGSATVEKRLDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALW 60
MAGSA V+KRL+FGLLGPL+MTIDG VP GTPKQRAVLAMLVINRNRPVGVD+LITALW
Sbjct 1 MAGSAMVDKRLEFGLLGPLEMTIDGELVPLGTPKQRAVLAMLVINRNRPVGVDSLITALW 60
Query 61 EEWPPSGARASIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKT 120
EEWPP+GARASIHSYVSNLRKLL GAG+DPR +LA APPGYRLSIPD+TCDLGRF+AEKT
Sbjct 61 EEWPPAGARASIHSYVSNLRKLLSGAGVDPRAMLATAPPGYRLSIPDSTCDLGRFIAEKT 120
Query 121 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEA 180
AGVHAAAAG+FEQAS+HLS AL +WRGPVLDDLRDFQFV+ FATALVEDK+LAHTAKAEA
Sbjct 121 AGVHAAAAGKFEQASQHLSRALAQWRGPVLDDLRDFQFVDAFATALVEDKILAHTAKAEA 180
Query 181 EIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLG 240
EIACGRA+AVI ELEALT EHPYREPLWTQLITAYYL+DRQSDALGAYRRVKTTLA+DL
Sbjct 181 EIACGRAAAVITELEALTAEHPYREPLWTQLITAYYLTDRQSDALGAYRRVKTTLAEDLS 240
Query 241 IDPGPTLRALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRG 300
IDPGPTLRALNERILRQ+PLDAK +AK+TA GTVTVLDQRTM SGQQAVAYLH IASG
Sbjct 241 IDPGPTLRALNERILRQEPLDAKMNAKSTAVGTVTVLDQRTMVSGQQAVAYLHTIASGHD 300
Query 301 YPLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSA 360
YP++ AATRIGRL DNDIVLDSANVSRHHAVI+DTGTNY+INDLRSSNGVHVQH+RIR A
Sbjct 301 YPIRTAATRIGRLSDNDIVLDSANVSRHHAVIIDTGTNYIINDLRSSNGVHVQHQRIRGA 360
Query 361 VTLNDGDHIRICDHEFTFQISA 382
VTLNDGDHIRICDH+FTFQ++A
Sbjct 361 VTLNDGDHIRICDHDFTFQLTA 382
>gi|240173400|ref|ZP_04752058.1| transcriptional regulatory protein EmbR [Mycobacterium kansasii
ATCC 12478]
Length=381
Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/374 (86%), Positives = 348/374 (94%), Gaps = 0/374 (0%)
Query 9 KRLDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGA 68
KRL+FGLLGPL+M+IDG VP+GTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGA
Sbjct 4 KRLEFGLLGPLEMSIDGALVPTGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGA 63
Query 69 RASIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGVHAAAA 128
RASIHSYVSNLRKLL GAG+DPR +LAAAPPGYRLSIP+N+CDLGRF+AEK AGVHAAAA
Sbjct 64 RASIHSYVSNLRKLLSGAGVDPRAILAAAPPGYRLSIPENSCDLGRFIAEKAAGVHAAAA 123
Query 129 GRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRAS 188
G+FEQASRHL+AALR WRGPVLDDLRDFQFV FATALVEDK+LAHTAKAEAEIACGRA+
Sbjct 124 GKFEQASRHLAAALRVWRGPVLDDLRDFQFVNAFATALVEDKILAHTAKAEAEIACGRAA 183
Query 189 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248
VI ELEALT EHPYREPLW QLITAYYL+DRQSDAL AYRRVKTTLA+DLGIDPGPTLR
Sbjct 184 EVITELEALTVEHPYREPLWAQLITAYYLTDRQSDALSAYRRVKTTLAEDLGIDPGPTLR 243
Query 249 ALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAAT 308
LNERILRQ+PLDAK +AK+TA GTVTVLDQRTM +GQQA+A LHDIA+G +PL+ AAT
Sbjct 244 GLNERILRQEPLDAKMNAKSTAVGTVTVLDQRTMVTGQQAMACLHDIATGHDHPLRTAAT 303
Query 309 RIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSAVTLNDGDH 368
RIGRL DNDIVLDSA VSRHHAVI+DTGTNY+INDLRSSNGVHV H+RIR A TLNDGDH
Sbjct 304 RIGRLSDNDIVLDSAKVSRHHAVIIDTGTNYIINDLRSSNGVHVGHQRIRGAATLNDGDH 363
Query 369 IRICDHEFTFQISA 382
IRICDHEFTFQI+A
Sbjct 364 IRICDHEFTFQIAA 377
>gi|289749819|ref|ZP_06509197.1| transcriptional regulator embR [Mycobacterium tuberculosis T92]
gi|289690406|gb|EFD57835.1| transcriptional regulator embR [Mycobacterium tuberculosis T92]
Length=313
Score = 632 bits (1629), Expect = 5e-179, Method: Compositional matrix adjust.
Identities = 311/313 (99%), Positives = 312/313 (99%), Gaps = 0/313 (0%)
Query 76 VSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGVHAAAAGRFEQAS 135
+SNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNT DLGRFVAEKTAGVHAAAAGRFEQAS
Sbjct 1 MSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTYDLGRFVAEKTAGVHAAAAGRFEQAS 60
Query 136 RHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE 195
RHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE
Sbjct 61 RHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE 120
Query 196 ALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERIL 255
ALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERIL
Sbjct 121 ALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERIL 180
Query 256 RQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAATRIGRLHD 315
RQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAATRIGRLHD
Sbjct 181 RQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAATRIGRLHD 240
Query 316 NDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSAVTLNDGDHIRICDHE 375
NDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSAVTLNDGDHIRICDHE
Sbjct 241 NDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSAVTLNDGDHIRICDHE 300
Query 376 FTFQISAGTHGGT 388
FTFQISAGTHGGT
Sbjct 301 FTFQISAGTHGGT 313
>gi|342858086|ref|ZP_08714742.1| transcriptional regulator [Mycobacterium colombiense CECT 3035]
gi|342135419|gb|EGT88585.1| transcriptional regulator [Mycobacterium colombiense CECT 3035]
Length=419
Score = 590 bits (1520), Expect = 2e-166, Method: Compositional matrix adjust.
Identities = 288/378 (77%), Positives = 329/378 (88%), Gaps = 4/378 (1%)
Query 5 ATVEKRLDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWP 64
A +KRL+FGLLGPL+M++DG VP GTPKQRAVLAML++NRN PVGVD LITALW+E P
Sbjct 40 AMADKRLEFGLLGPLEMSVDGALVPLGTPKQRAVLAMLLMNRNSPVGVDRLITALWDESP 99
Query 65 PSGARASIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGVH 124
PSGARAS+HSYVSNLRKLL GAG+DPR VL AAPPGYRL+IPD+TCDLGRF+ EKTAGVH
Sbjct 100 PSGARASLHSYVSNLRKLLSGAGVDPRSVLVAAPPGYRLNIPDDTCDLGRFIVEKTAGVH 159
Query 125 AAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIAC 184
AAAAGRFEQASRHLSAAL EWRGPVL+DL DF+FV+ F +LVE+K+L HTA+AEAEIAC
Sbjct 160 AAAAGRFEQASRHLSAALAEWRGPVLEDLEDFRFVDAFTASLVEEKILTHTAQAEAEIAC 219
Query 185 GRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 244
GRA VI ELEALT EHPYRE LW QL+TAYYLSDRQSDAL AYRRV+ +LADDLGIDPG
Sbjct 220 GRAFTVITELEALTAEHPYREQLWAQLMTAYYLSDRQSDALAAYRRVQKSLADDLGIDPG 279
Query 245 PTLRALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQ 304
LRALN+RILRQ+PLDAKK+A TTAA +TVL+Q T S ++ VAYLH++ +GR YPLQ
Sbjct 280 QNLRALNDRILRQEPLDAKKNAMTTAAVAITVLEQFT--SDRKVVAYLHEV-TGRSYPLQ 336
Query 305 AAATRIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSAVTLN 364
+ T IGRL DNDIVLDS VSRHHAV+VDTGT Y+I+DLRSSNGVHVQH+RIRSA TL
Sbjct 337 GSTT-IGRLSDNDIVLDSPKVSRHHAVVVDTGTGYIIDDLRSSNGVHVQHQRIRSAATLQ 395
Query 365 DGDHIRICDHEFTFQISA 382
DGD +RI DHEFTFQ++A
Sbjct 396 DGDRVRIGDHEFTFQVAA 413
>gi|118465098|ref|YP_880660.1| transcriptional regulator [Mycobacterium avium 104]
gi|118166385|gb|ABK67282.1| putative transcriptional regulator [Mycobacterium avium 104]
Length=381
Score = 555 bits (1431), Expect = 4e-156, Method: Compositional matrix adjust.
Identities = 275/373 (74%), Positives = 320/373 (86%), Gaps = 2/373 (0%)
Query 9 KRLDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGA 68
KRL+FGLLGPL+MT+DG VP GTPKQRAVLAML++NRN PVG+D LIT LW+E PPSGA
Sbjct 4 KRLEFGLLGPLEMTVDGDLVPLGTPKQRAVLAMLLMNRNNPVGIDRLITGLWDESPPSGA 63
Query 69 RASIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGVHAAAA 128
RAS+HSYVSNLRKLL AG+DPR VL AAPPGYRL+IPD+ CDLGRF+ EKTAGV AAA+
Sbjct 64 RASLHSYVSNLRKLLSNAGVDPRTVLVAAPPGYRLNIPDDRCDLGRFITEKTAGVQAAAS 123
Query 129 GRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRAS 188
GRFEQA HL+AAL +WRGPVL+DL +F+FV FAT+LVE+K+L H A+AEAEIACGRA
Sbjct 124 GRFEQAGAHLAAALAQWRGPVLEDLAEFRFVGTFATSLVEEKILTHIAQAEAEIACGRAF 183
Query 189 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248
+VI ELE+LT EHPYRE LW QL+TAYYL+DRQSDAL AYRRV+ +LADDLGIDPG LR
Sbjct 184 SVITELESLTREHPYREQLWAQLMTAYYLTDRQSDALAAYRRVQKSLADDLGIDPGQNLR 243
Query 249 ALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAAT 308
LN+RILRQ+PLDAKK+A TTAA TVTVL+ T+ASG+ A A LHD A+GR +PL+ + T
Sbjct 244 MLNDRILRQEPLDAKKNAMTTAAVTVTVLEHYTLASGRNAGALLHD-AAGRAFPLRGSTT 302
Query 309 RIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSAVTLNDGDH 368
IGRL DNDIVLDS VSRHHAVIVDTGT+Y+INDLRSSNGVHVQ +RI SA L DGD
Sbjct 303 -IGRLDDNDIVLDSPKVSRHHAVIVDTGTSYIINDLRSSNGVHVQDQRIHSAAVLQDGDR 361
Query 369 IRICDHEFTFQIS 381
IRIC+HEFTF+++
Sbjct 362 IRICEHEFTFRLA 374
>gi|41408601|ref|NP_961437.1| EmbR_2 [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41396959|gb|AAS04820.1| EmbR_2 [Mycobacterium avium subsp. paratuberculosis K-10]
Length=380
Score = 555 bits (1431), Expect = 4e-156, Method: Compositional matrix adjust.
Identities = 275/373 (74%), Positives = 320/373 (86%), Gaps = 2/373 (0%)
Query 9 KRLDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGA 68
KRL+FGLLGPL+MT+DG VP GTPKQRAVLAML++NRN PVG+D LIT LW+E PPSGA
Sbjct 3 KRLEFGLLGPLEMTVDGDLVPLGTPKQRAVLAMLLMNRNNPVGIDRLITGLWDESPPSGA 62
Query 69 RASIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGVHAAAA 128
RAS+HSYVSNLRKLL AG+DPR VL AAPPGYRL+IPD+ CDLGRF+ EKTAGV AAA+
Sbjct 63 RASLHSYVSNLRKLLSNAGVDPRTVLVAAPPGYRLNIPDDRCDLGRFITEKTAGVQAAAS 122
Query 129 GRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRAS 188
GRFEQA HL+AAL +WRGPVL+DL +F+FV FAT+LVE+K+L H A+AEAEIACGRA
Sbjct 123 GRFEQAGAHLAAALAQWRGPVLEDLTEFRFVGTFATSLVEEKILTHIAQAEAEIACGRAF 182
Query 189 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248
+VI ELE+LT EHPYRE LW QL+TAYYL+DRQSDAL AYRRV+ +LADDLGIDPG LR
Sbjct 183 SVITELESLTREHPYREQLWAQLMTAYYLTDRQSDALAAYRRVQKSLADDLGIDPGQNLR 242
Query 249 ALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAAT 308
LN+RILRQ+PLDAKK+A TTAA TVTVL+ T+ASG+ A A LHD A+GR +PL+ + T
Sbjct 243 MLNDRILRQEPLDAKKNAMTTAAVTVTVLEHYTLASGRNAGALLHD-AAGRAFPLRGSTT 301
Query 309 RIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSAVTLNDGDH 368
IGRL DNDIVLDS VSRHHAVIVDTGT+Y+INDLRSSNGVHVQ +RI SA L DGD
Sbjct 302 -IGRLDDNDIVLDSPKVSRHHAVIVDTGTSYIINDLRSSNGVHVQDQRIHSAAVLQDGDR 360
Query 369 IRICDHEFTFQIS 381
IRIC+HEFTF+++
Sbjct 361 IRICEHEFTFRLA 373
>gi|254774296|ref|ZP_05215812.1| putative transcriptional regulator [Mycobacterium avium subsp.
avium ATCC 25291]
Length=381
Score = 554 bits (1428), Expect = 8e-156, Method: Compositional matrix adjust.
Identities = 274/373 (74%), Positives = 320/373 (86%), Gaps = 2/373 (0%)
Query 9 KRLDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGA 68
KRL+FGLLGPL+MT+DG VP GTPKQRAVLAML++NRN PVG+D LIT LW+E PPSGA
Sbjct 4 KRLEFGLLGPLEMTVDGDLVPLGTPKQRAVLAMLLMNRNNPVGIDRLITGLWDESPPSGA 63
Query 69 RASIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGVHAAAA 128
RAS+HSYVSNLRK+L AG+DPR VL AAPPGYRL+IPD+ CDLGRF+ EKTAGV AAA+
Sbjct 64 RASLHSYVSNLRKMLSNAGVDPRTVLVAAPPGYRLNIPDDRCDLGRFITEKTAGVQAAAS 123
Query 129 GRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRAS 188
GRFEQA HL+AAL +WRGPVL+DL +F+FV FAT+LVE+K+L H A+AEAEIACGRA
Sbjct 124 GRFEQAGAHLAAALAQWRGPVLEDLAEFRFVGTFATSLVEEKILTHIAQAEAEIACGRAF 183
Query 189 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248
+VI ELE+LT EHPYRE LW QL+TAYYL+DRQSDAL AYRRV+ +LADDLGIDPG LR
Sbjct 184 SVITELESLTREHPYREQLWAQLMTAYYLTDRQSDALAAYRRVQKSLADDLGIDPGQNLR 243
Query 249 ALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAAT 308
LN+RILRQ+PLDAKK+A TTAA TVTVL+ T+ASG+ A A LHD A+GR +PL+ + T
Sbjct 244 MLNDRILRQEPLDAKKNAMTTAAVTVTVLEHYTLASGRNAGALLHD-AAGRAFPLRGSTT 302
Query 309 RIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSAVTLNDGDH 368
IGRL DNDIVLDS VSRHHAVIVDTGT+Y+INDLRSSNGVHVQ +RI SA L DGD
Sbjct 303 -IGRLDDNDIVLDSPRVSRHHAVIVDTGTSYIINDLRSSNGVHVQDQRIHSAAVLQDGDR 361
Query 369 IRICDHEFTFQIS 381
IRIC+HEFTF+++
Sbjct 362 IRICEHEFTFRLA 374
>gi|336458611|gb|EGO37578.1| DNA-binding transcriptional activator of the SARP family [Mycobacterium
avium subsp. paratuberculosis S397]
Length=417
Score = 553 bits (1425), Expect = 2e-155, Method: Compositional matrix adjust.
Identities = 275/373 (74%), Positives = 320/373 (86%), Gaps = 2/373 (0%)
Query 9 KRLDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGA 68
KRL+FGLLGPL+MT+DG VP GTPKQRAVLAML++NRN PVG+D LIT LW+E PPSGA
Sbjct 40 KRLEFGLLGPLEMTVDGDLVPLGTPKQRAVLAMLLMNRNNPVGIDRLITGLWDESPPSGA 99
Query 69 RASIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGVHAAAA 128
RAS+HSYVSNLRKLL AG+DPR VL AAPPGYRL+IPD+ CDLGRF+ EKTAGV AAA+
Sbjct 100 RASLHSYVSNLRKLLSNAGVDPRTVLVAAPPGYRLNIPDDRCDLGRFITEKTAGVQAAAS 159
Query 129 GRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRAS 188
GRFEQA HL+AAL +WRGPVL+DL +F+FV FAT+LVE+K+L H A+AEAEIACGRA
Sbjct 160 GRFEQAGAHLAAALAQWRGPVLEDLTEFRFVGTFATSLVEEKILTHIAQAEAEIACGRAF 219
Query 189 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248
+VI ELE+LT EHPYRE LW QL+TAYYL+DRQSDAL AYRRV+ +LADDLGIDPG LR
Sbjct 220 SVITELESLTREHPYREQLWAQLMTAYYLTDRQSDALAAYRRVQKSLADDLGIDPGQNLR 279
Query 249 ALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAAT 308
LN+RILRQ+PLDAKK+A TTAA TVTVL+ T+ASG+ A A LHD A+GR +PL+ + T
Sbjct 280 MLNDRILRQEPLDAKKNAMTTAAVTVTVLEHYTLASGRNAGALLHD-AAGRAFPLRGSTT 338
Query 309 RIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSAVTLNDGDH 368
IGRL DNDIVLDS VSRHHAVIVDTGT+Y+INDLRSSNGVHVQ +RI SA L DGD
Sbjct 339 -IGRLDDNDIVLDSPKVSRHHAVIVDTGTSYIINDLRSSNGVHVQDQRIHSAAVLQDGDR 397
Query 369 IRICDHEFTFQIS 381
IRIC+HEFTF+++
Sbjct 398 IRICEHEFTFRLA 410
>gi|183983526|ref|YP_001851817.1| transcriptional regulatory protein EmbR_1 [Mycobacterium marinum
M]
gi|183176852|gb|ACC41962.1| transcriptional regulatory protein EmbR_1 [Mycobacterium marinum
M]
Length=379
Score = 450 bits (1158), Expect = 2e-124, Method: Compositional matrix adjust.
Identities = 224/373 (61%), Positives = 273/373 (74%), Gaps = 0/373 (0%)
Query 11 LDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARA 70
L+FG LGPL+MTIDG VP GTPKQRAVLA L+INRNRPV +DALI A WE+ P+GAR
Sbjct 2 LNFGALGPLEMTIDGVAVPLGTPKQRAVLAALLINRNRPVAIDALIEAAWEQGAPAGARE 61
Query 71 SIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGVHAAAAGR 130
++++YVS LR+L+ GAGI+ R +LA PPGYRL++ D DLGRFV EK AGV AAAA
Sbjct 62 TLYAYVSKLRRLMAGAGIETRELLANMPPGYRLTVADGDYDLGRFVTEKNAGVRAAAASG 121
Query 131 FEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 190
FEQAS H SAAL +WRGPVLDDLRDF F++ FAT L E+K++ A+AE EIACGRA +V
Sbjct 122 FEQASDHFSAALAQWRGPVLDDLRDFTFLDAFATGLAEEKLVTQIARAEVEIACGRAQSV 181
Query 191 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250
ELE LT +HPYREPLW QLITAYYL++RQSDAL AYRR++ LADDLG+DP PT+RAL
Sbjct 182 TGELEGLTTDHPYREPLWVQLITAYYLAERQSDALDAYRRLRDRLADDLGVDPAPTVRAL 241
Query 251 NERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAATRI 310
RILRQ+PLD K+A+ A T++ L A A+ R YPL A TRI
Sbjct 242 YGRILRQRPLDVCKTAQANADETISTLSVHMPAIPDATHGPSLRDANERRYPLVATTTRI 301
Query 311 GRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSAVTLNDGDHIR 370
GR DNDIVL VSRHHA IVDTG+++VI DLRS NGV V R+ ++ L +GD IR
Sbjct 302 GRSPDNDIVLSGGKVSRHHAAIVDTGSSFVIVDLRSLNGVSVSGRRVHTSTALTEGDRIR 361
Query 371 ICDHEFTFQISAG 383
I +H+ F+ ++G
Sbjct 362 IAEHQLMFETASG 374
>gi|118467005|ref|YP_879519.1| EmbR protein [Mycobacterium avium 104]
gi|1619917|gb|AAC44546.1| EmbR [Mycobacterium avium]
gi|118168292|gb|ABK69189.1| EmbR protein [Mycobacterium avium 104]
Length=384
Score = 446 bits (1148), Expect = 2e-123, Method: Compositional matrix adjust.
Identities = 226/377 (60%), Positives = 276/377 (74%), Gaps = 8/377 (2%)
Query 11 LDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARA 70
L FG+LGPL +T G +P G PKQRAVLAML+I+RNRPV VDALI +W P AR
Sbjct 6 LGFGVLGPLSVTAGGAQLPLGAPKQRAVLAMLLIHRNRPVSVDALIDGVWGAAPVPAART 65
Query 71 SIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGVHAAAAGR 130
SI SYVS LR+LL A +P +LA+ PPGY+L++ D CDLGRF KTAGV AA+ GR
Sbjct 66 SIQSYVSTLRRLLRSALPNPNGLLASVPPGYQLNVADADCDLGRFRGHKTAGVQAASRGR 125
Query 131 FEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 190
FE+AS HL+AALREWRGPVLDDL +F FV+ FA L+E++V AHTA+AEAEIACGRA V
Sbjct 126 FEEASGHLAAALREWRGPVLDDLHNFAFVDAFANLLLEERVAAHTARAEAEIACGRADGV 185
Query 191 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250
I ELEAL +HPYREPLW QLITAYY+++RQSDALGAYRR+KT LA+ LGIDPGPT++AL
Sbjct 186 IGELEALVAQHPYREPLWAQLITAYYVTERQSDALGAYRRLKTALAEGLGIDPGPTVKAL 245
Query 251 NERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQA-------VAYLHDIASGRGYPL 303
+RILRQ+PL + K ++ Q T+ S A VA L D A GR Y L
Sbjct 246 QQRILRQEPLGPGQPGKAARRAMLSTHKQSTVRSESAAAVVDNPVVARLRDKA-GRHYQL 304
Query 304 QAAATRIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSAVTL 363
TRIGRL DN+IVLD VSRHHAVI+DTGT+++I D++S+NGV V+ R++ + TL
Sbjct 305 NGVTTRIGRLDDNEIVLDDTEVSRHHAVIIDTGTDFLITDMKSTNGVQVRGRRVQRSATL 364
Query 364 NDGDHIRICDHEFTFQI 380
DGDHIRI + EF F+I
Sbjct 365 VDGDHIRIGNSEFVFEI 381
>gi|124491183|gb|ABN12926.1| EmbR [Mycobacterium tuberculosis]
Length=219
Score = 446 bits (1147), Expect = 3e-123, Method: Compositional matrix adjust.
Identities = 218/219 (99%), Positives = 218/219 (99%), Gaps = 0/219 (0%)
Query 4 SATVEKRLDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEW 63
SAT EKRLDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEW
Sbjct 1 SATGEKRLDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEW 60
Query 64 PPSGARASIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGV 123
PPSGARASIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGV
Sbjct 61 PPSGARASIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGV 120
Query 124 HAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIA 183
HAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIA
Sbjct 121 HAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIA 180
Query 184 CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQS 222
CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQS
Sbjct 181 CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQS 219
>gi|254773284|ref|ZP_05214800.1| EmbR protein [Mycobacterium avium subsp. avium ATCC 25291]
Length=384
Score = 444 bits (1142), Expect = 1e-122, Method: Compositional matrix adjust.
Identities = 225/377 (60%), Positives = 276/377 (74%), Gaps = 8/377 (2%)
Query 11 LDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARA 70
L FG+LGPL +T G +P G PK+RAVLAML+I+RNRPV VDALI +W P AR
Sbjct 6 LGFGVLGPLSVTAGGAQLPLGAPKRRAVLAMLLIHRNRPVSVDALIDGVWGAAPVPAART 65
Query 71 SIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGVHAAAAGR 130
SI SYVS LR+LL A +P +LA+ PPGY+L++ D CDLGRF KTAGV AA+ GR
Sbjct 66 SIQSYVSTLRRLLRSALPNPNGLLASVPPGYQLNVADADCDLGRFRGHKTAGVQAASRGR 125
Query 131 FEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 190
FE+AS HL+AALREWRGPVLDDL +F FV+ FA L+E++V AHTA+AEAEIACGRA V
Sbjct 126 FEEASGHLAAALREWRGPVLDDLHNFAFVDAFANLLLEERVAAHTARAEAEIACGRADGV 185
Query 191 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250
I ELEAL +HPYREPLW QLITAYY+++RQSDALGAYRR+KT LA+ LGIDPGPT++AL
Sbjct 186 IGELEALVAQHPYREPLWAQLITAYYVTERQSDALGAYRRLKTALAEGLGIDPGPTVKAL 245
Query 251 NERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQA-------VAYLHDIASGRGYPL 303
+RILRQ+PL + K ++ Q T+ S A VA L D A GR Y L
Sbjct 246 QQRILRQEPLGPGQPGKAARRAMLSTHKQSTVRSESAAAVVDNPVVARLRDKA-GRHYQL 304
Query 304 QAAATRIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSAVTL 363
TRIGRL DN+IVLD VSRHHAVI+DTGT+++I D++S+NGV V+ R++ + TL
Sbjct 305 NGVTTRIGRLDDNEIVLDDTEVSRHHAVIIDTGTDFLITDMKSTNGVQVRGRRVQRSATL 364
Query 364 NDGDHIRICDHEFTFQI 380
DGDHIRI + EF F+I
Sbjct 365 VDGDHIRIGNSEFVFEI 381
>gi|336461580|gb|EGO40446.1| DNA-binding transcriptional activator of the SARP family [Mycobacterium
avium subsp. paratuberculosis S397]
Length=384
Score = 442 bits (1137), Expect = 4e-122, Method: Compositional matrix adjust.
Identities = 225/377 (60%), Positives = 275/377 (73%), Gaps = 8/377 (2%)
Query 11 LDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARA 70
L FG+LGPL +T G +P G PKQRAVLAML+I+RNRPV VDALI +W P AR
Sbjct 6 LGFGVLGPLSVTAGGAQLPLGAPKQRAVLAMLLIHRNRPVSVDALIDGVWGAAPVPAART 65
Query 71 SIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGVHAAAAGR 130
SI SYVS LR+LL A +P +LA+ PPGY+L++ D CDLGRF KTAGV AA+ GR
Sbjct 66 SIQSYVSTLRRLLRSALPNPNGLLASVPPGYQLNVADADCDLGRFRGHKTAGVQAASRGR 125
Query 131 FEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 190
FE+AS HL+AALREWRGPVLDDL +F FV+ FA L+E++V AHTA+AEAEIACGRA V
Sbjct 126 FEEASGHLAAALREWRGPVLDDLHNFAFVDAFANLLLEERVAAHTARAEAEIACGRADGV 185
Query 191 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250
I ELEAL +HPYREPLW QLITAYY+++RQSDALGAYRR+KT LA+ LGIDPGPT++AL
Sbjct 186 IGELEALVAQHPYREPLWAQLITAYYVTERQSDALGAYRRLKTALAEGLGIDPGPTVKAL 245
Query 251 NERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQA-------VAYLHDIASGRGYPL 303
+RILRQ+PL + K ++ Q T+ S A VA L D A GR Y L
Sbjct 246 QQRILRQEPLGPGQPGKAARRAMLSTHKQSTVRSESAAAVVDNPVVARLRDKA-GRHYQL 304
Query 304 QAAATRIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSAVTL 363
TRIGRL DN+IVLD VSRHHAVI+DTGT+++I D++S+NGV V+ R++ + TL
Sbjct 305 NGVTTRIGRLDDNEIVLDDTEVSRHHAVIIDTGTDFLITDMKSTNGVQVRGRRVQRSATL 364
Query 364 NDGDHIRICDHEFTFQI 380
DGDHI I + EF F+I
Sbjct 365 VDGDHICIGNSEFVFEI 381
>gi|41406328|ref|NP_959164.1| EmbR_1 [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41394676|gb|AAS02547.1| EmbR_1 [Mycobacterium avium subsp. paratuberculosis K-10]
Length=379
Score = 441 bits (1135), Expect = 7e-122, Method: Compositional matrix adjust.
Identities = 224/377 (60%), Positives = 275/377 (73%), Gaps = 8/377 (2%)
Query 11 LDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARA 70
+ FG+LGPL +T G +P G PKQRAVLAML+I+RNRPV VDALI +W P AR
Sbjct 1 MGFGVLGPLSVTAGGAQLPLGAPKQRAVLAMLLIHRNRPVSVDALIDGVWGAAPVPAART 60
Query 71 SIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGVHAAAAGR 130
SI SYVS LR+LL A +P +LA+ PPGY+L++ D CDLGRF KTAGV AA+ GR
Sbjct 61 SIQSYVSTLRRLLRSALPNPNGLLASVPPGYQLNVADADCDLGRFRGHKTAGVQAASRGR 120
Query 131 FEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 190
FE+AS HL+AALREWRGPVLDDL +F FV+ FA L+E++V AHTA+AEAEIACGRA V
Sbjct 121 FEEASGHLAAALREWRGPVLDDLHNFAFVDAFANLLLEERVAAHTARAEAEIACGRADGV 180
Query 191 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250
I ELEAL +HPYREPLW QLITAYY+++RQSDALGAYRR+KT LA+ LGIDPGPT++AL
Sbjct 181 IGELEALVAQHPYREPLWAQLITAYYVTERQSDALGAYRRLKTALAEGLGIDPGPTVKAL 240
Query 251 NERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQA-------VAYLHDIASGRGYPL 303
+RILRQ+PL + K ++ Q T+ S A VA L D A GR Y L
Sbjct 241 QQRILRQEPLGPGQPGKAARRAMLSTHKQSTVRSESAAAVIDNPVVARLRDKA-GRHYQL 299
Query 304 QAAATRIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSAVTL 363
TRIGRL DN+IVLD VSRHHAVI+DTGT+++I D++S+NGV V+ R++ + TL
Sbjct 300 NGVTTRIGRLDDNEIVLDDTEVSRHHAVIIDTGTDFLITDMKSTNGVQVRGRRVQRSATL 359
Query 364 NDGDHIRICDHEFTFQI 380
DGDHI I + EF F+I
Sbjct 360 VDGDHICIGNSEFVFEI 376
>gi|124491181|gb|ABN12925.1| EmbR [Mycobacterium tuberculosis]
Length=215
Score = 440 bits (1131), Expect = 2e-121, Method: Compositional matrix adjust.
Identities = 214/215 (99%), Positives = 215/215 (100%), Gaps = 0/215 (0%)
Query 16 LGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARASIHSY 75
LGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARASIHSY
Sbjct 1 LGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARASIHSY 60
Query 76 VSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGVHAAAAGRFEQAS 135
VSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGVHAAAAGRFEQAS
Sbjct 61 VSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGVHAAAAGRFEQAS 120
Query 136 RHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE 195
RHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE
Sbjct 121 RHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE 180
Query 196 ALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRR 230
ALTFEHPYREPLWTQLITAYYLSDRQS+ALGAYRR
Sbjct 181 ALTFEHPYREPLWTQLITAYYLSDRQSEALGAYRR 215
>gi|342860050|ref|ZP_08716702.1| EmbR protein [Mycobacterium colombiense CECT 3035]
gi|342132428|gb|EGT85657.1| EmbR protein [Mycobacterium colombiense CECT 3035]
Length=369
Score = 439 bits (1130), Expect = 3e-121, Method: Compositional matrix adjust.
Identities = 223/367 (61%), Positives = 271/367 (74%), Gaps = 8/367 (2%)
Query 21 MTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARASIHSYVSNLR 80
MT +GT + G PKQRAVLAML+++RNRPV VDALI A+W E P AR SI SYVS LR
Sbjct 1 MTANGTQLSLGAPKQRAVLAMLLVHRNRPVSVDALIDAVWGEAPVPAARTSIQSYVSTLR 60
Query 81 KLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGVHAAAAGRFEQASRHLSA 140
+LL A +P VLA+APPGY+LS+ D CDLGRF A K AGV AA+ GRFE+AS HLSA
Sbjct 61 RLLRSAVANPNEVLASAPPGYQLSVADADCDLGRFRAHKAAGVQAASLGRFEEASGHLSA 120
Query 141 ALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE 200
AL EWRGPVLDDL +F FV+ FA L+E++V ++TA+AEAEIACGRA VI ELEAL
Sbjct 121 ALGEWRGPVLDDLHNFAFVDAFAGMLLEERVASYTARAEAEIACGRADGVIGELEALVAR 180
Query 201 HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERILRQQPL 260
HP+REPLW QLITAYY+++RQSDALGAYRR+KT LAD LGIDPGPT+ AL +RILRQ+PL
Sbjct 181 HPFREPLWAQLITAYYVTERQSDALGAYRRLKTALADGLGIDPGPTVNALQQRILRQEPL 240
Query 261 DAKKSAKTTAAGTVTVLDQRTMASGQQA-------VAYLHDIASGRGYPLQAAATRIGRL 313
++ + +T Q T+ S A VA L D A GR Y L TRIGRL
Sbjct 241 GPEQPKRAGKRAVMTTHKQSTVRSESAAALVDDPVVARLRDKA-GRHYQLNGVTTRIGRL 299
Query 314 HDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSAVTLNDGDHIRICD 373
DN+IVLD VSRHHAVI+DTGT+++I D++S+NGV V+ +R+R + TL DGDHIRI +
Sbjct 300 DDNEIVLDDTEVSRHHAVIIDTGTDFLITDMKSTNGVQVRGQRVRRSTTLEDGDHIRIGN 359
Query 374 HEFTFQI 380
EF F+I
Sbjct 360 SEFVFEI 366
>gi|254365948|ref|ZP_04981993.1| hypothetical protein TBHG_03263 [Mycobacterium tuberculosis str.
Haarlem]
gi|134151461|gb|EBA43506.1| hypothetical protein TBHG_03263 [Mycobacterium tuberculosis str.
Haarlem]
gi|323718198|gb|EGB27380.1| hypothetical protein TMMG_02477 [Mycobacterium tuberculosis CDC1551A]
Length=382
Score = 432 bits (1112), Expect = 3e-119, Method: Compositional matrix adjust.
Identities = 212/370 (58%), Positives = 274/370 (75%), Gaps = 1/370 (0%)
Query 11 LDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARA 70
L FG+LGPL+++ +P GTPKQRAVLA L+I+RNRPVG+D+LI A WE+ P G+RA
Sbjct 7 LRFGILGPLEISAGFRSLPLGTPKQRAVLATLIIHRNRPVGIDSLIDAAWEQDRPEGSRA 66
Query 71 SIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGVHAAAAGR 130
++++YVSNLR+L+ G D +LA+APPGYRL++ DN D+ RF+++++AG+ AAAAG
Sbjct 67 TVYTYVSNLRRLVSTTGADSHSILASAPPGYRLAVADNQYDVARFISQRSAGLRAAAAGS 126
Query 131 FEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 190
FEQAS HLSAAL EWRGPVLDDLR+F FV A +LVEDK++AHTA AEAEIACGRA +V
Sbjct 127 FEQASDHLSAALAEWRGPVLDDLREFSFVTRLANSLVEDKIIAHTALAEAEIACGRADSV 186
Query 191 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250
I+ELE L EHPY E LW QLI AYY+S+RQSDAL AYRR+KT+LA+DLG+DPGP +R L
Sbjct 187 ISELEELILEHPYHEALWRQLIAAYYVSERQSDALDAYRRLKTSLAEDLGVDPGPKVRTL 246
Query 251 NERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAATRI 310
E++LRQQ LD + + A + L+ + + A + D A+G PL RI
Sbjct 247 YEQVLRQQALDTRVVVQAAAGDIIRALEHSPGMTDRSPRAAIRD-AAGHRSPLGRLPLRI 305
Query 311 GRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSAVTLNDGDHIR 370
GR ND+VL VS +HAVIV+TG +++I DLRS NGV+V+ RI + TLNDGDHIR
Sbjct 306 GRSKSNDMVLPDGKVSPYHAVIVNTGESFMITDLRSVNGVYVRGRRIATTATLNDGDHIR 365
Query 371 ICDHEFTFQI 380
I DHE TF++
Sbjct 366 IGDHELTFEV 375
>gi|15842920|ref|NP_337957.1| AfsR/DnrI/RedD family transcriptional regulator [Mycobacterium
tuberculosis CDC1551]
gi|31794510|ref|NP_857003.1| transcriptional regulatory protein EmbR2 [Mycobacterium bovis
AF2122/97]
gi|121639253|ref|YP_979477.1| putative transcriptional regulatory protein embR2 [Mycobacterium
bovis BCG str. Pasteur 1173P2]
29 more sequence titles
Length=381
Score = 432 bits (1111), Expect = 5e-119, Method: Compositional matrix adjust.
Identities = 212/370 (58%), Positives = 274/370 (75%), Gaps = 1/370 (0%)
Query 11 LDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARA 70
L FG+LGPL+++ +P GTPKQRAVLA L+I+RNRPVG+D+LI A WE+ P G+RA
Sbjct 6 LRFGILGPLEISAGFRSLPLGTPKQRAVLATLIIHRNRPVGIDSLIDAAWEQDRPEGSRA 65
Query 71 SIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGVHAAAAGR 130
++++YVSNLR+L+ G D +LA+APPGYRL++ DN D+ RF+++++AG+ AAAAG
Sbjct 66 TVYTYVSNLRRLVSTTGADSHSILASAPPGYRLAVADNQYDVARFISQRSAGLRAAAAGS 125
Query 131 FEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 190
FEQAS HLSAAL EWRGPVLDDLR+F FV A +LVEDK++AHTA AEAEIACGRA +V
Sbjct 126 FEQASDHLSAALAEWRGPVLDDLREFSFVTRLANSLVEDKIIAHTALAEAEIACGRADSV 185
Query 191 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250
I+ELE L EHPY E LW QLI AYY+S+RQSDAL AYRR+KT+LA+DLG+DPGP +R L
Sbjct 186 ISELEELILEHPYHEALWRQLIAAYYVSERQSDALDAYRRLKTSLAEDLGVDPGPKVRTL 245
Query 251 NERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAATRI 310
E++LRQQ LD + + A + L+ + + A + D A+G PL RI
Sbjct 246 YEQVLRQQALDTRVVVQAAAGDIIRALEHSPGMTDRSPRAAIRD-AAGHRSPLGRLPLRI 304
Query 311 GRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSAVTLNDGDHIR 370
GR ND+VL VS +HAVIV+TG +++I DLRS NGV+V+ RI + TLNDGDHIR
Sbjct 305 GRSKSNDMVLPDGKVSPYHAVIVNTGESFMITDLRSVNGVYVRGRRIATTATLNDGDHIR 364
Query 371 ICDHEFTFQI 380
I DHE TF++
Sbjct 365 IGDHELTFEV 374
>gi|124491171|gb|ABN12920.1| EmbR [Mycobacterium tuberculosis]
Length=211
Score = 426 bits (1096), Expect = 2e-117, Method: Compositional matrix adjust.
Identities = 209/211 (99%), Positives = 209/211 (99%), Gaps = 0/211 (0%)
Query 22 TIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARASIHSYVSNLRK 81
TIDGTPVPSG PKQRAVLAMLVINRNRPVGV ALITALWEEWPPSGARASIHSYVSNLRK
Sbjct 1 TIDGTPVPSGPPKQRAVLAMLVINRNRPVGVHALITALWEEWPPSGARASIHSYVSNLRK 60
Query 82 LLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAA 141
LLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAA
Sbjct 61 LLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAA 120
Query 142 LREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH 201
LREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH
Sbjct 121 LREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH 180
Query 202 PYREPLWTQLITAYYLSDRQSDALGAYRRVK 232
PYREPLWTQLITAYYLSDRQSDALGAYRRVK
Sbjct 181 PYREPLWTQLITAYYLSDRQSDALGAYRRVK 211
>gi|306969428|ref|ZP_07482089.1| putative FHA domain protein [Mycobacterium tuberculosis SUMu009]
gi|308353035|gb|EFP41886.1| putative FHA domain protein [Mycobacterium tuberculosis SUMu009]
Length=357
Score = 416 bits (1070), Expect = 3e-114, Method: Compositional matrix adjust.
Identities = 204/350 (59%), Positives = 261/350 (75%), Gaps = 1/350 (0%)
Query 31 GTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARASIHSYVSNLRKLLGGAGIDP 90
GTPKQRAVLA L+I+RNRPVG+D+LI A WE+ P G+RA++++YVSNLR+L+ G D
Sbjct 2 GTPKQRAVLATLIIHRNRPVGIDSLIDAAWEQDRPEGSRATVYTYVSNLRRLVSTTGADS 61
Query 91 RVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVL 150
+LA+APPGYRL++ DN D+ RF+++++AG+ AAAAG FEQAS HLSAAL EWRGPVL
Sbjct 62 HSILASAPPGYRLAVADNQYDVARFISQRSAGLRAAAAGSFEQASDHLSAALAEWRGPVL 121
Query 151 DDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQ 210
DDLR+F FV A +LVEDK++AHTA AEAEIACGRA +VI+ELE L EHPY E LW Q
Sbjct 122 DDLREFSFVTRLANSLVEDKIIAHTALAEAEIACGRADSVISELEELILEHPYHEALWRQ 181
Query 211 LITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERILRQQPLDAKKSAKTTA 270
LI AYY+S+RQSDAL AYRR+KT+LA+DLG+DPGP +R L E++LRQQ LD + + A
Sbjct 182 LIAAYYVSERQSDALDAYRRLKTSLAEDLGVDPGPKVRTLYEQVLRQQALDTRVVVQAAA 241
Query 271 AGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAATRIGRLHDNDIVLDSANVSRHHA 330
+ L+ + + A + D A+G PL RIGR ND+VL VS +HA
Sbjct 242 GDIIRALEHSPGMTDRSPRAAIRD-AAGHRSPLGRLPLRIGRSKSNDMVLPDGKVSPYHA 300
Query 331 VIVDTGTNYVINDLRSSNGVHVQHERIRSAVTLNDGDHIRICDHEFTFQI 380
VIV+TG +++I DLRS NGV+V+ RI + TLNDGDHIRI DHE TF++
Sbjct 301 VIVNTGESFMITDLRSVNGVYVRGRRIATTATLNDGDHIRIGDHELTFEV 350
>gi|124491163|gb|ABN12916.1| EmbR [Mycobacterium tuberculosis]
Length=207
Score = 415 bits (1067), Expect = 6e-114, Method: Compositional matrix adjust.
Identities = 206/207 (99%), Positives = 206/207 (99%), Gaps = 0/207 (0%)
Query 165 ALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDA 224
ALVEDKV AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDA
Sbjct 1 ALVEDKVRAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDA 60
Query 225 LGAYRRVKTTLADDLGIDPGPTLRALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMAS 284
LGAYRRVKTTLADDLGIDPGPTLRALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMAS
Sbjct 61 LGAYRRVKTTLADDLGIDPGPTLRALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMAS 120
Query 285 GQQAVAYLHDIASGRGYPLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDL 344
GQQAVAYLHDIASGRGYPLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDL
Sbjct 121 GQQAVAYLHDIASGRGYPLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDL 180
Query 345 RSSNGVHVQHERIRSAVTLNDGDHIRI 371
RSSNGVHVQHERIRSAVTLNDGDHIRI
Sbjct 181 RSSNGVHVQHERIRSAVTLNDGDHIRI 207
>gi|124491177|gb|ABN12923.1| EmbR [Mycobacterium tuberculosis]
Length=202
Score = 411 bits (1056), Expect = 1e-112, Method: Compositional matrix adjust.
Identities = 201/202 (99%), Positives = 201/202 (99%), Gaps = 0/202 (0%)
Query 18 PLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARASIHSYVS 77
PLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARASIHSYVS
Sbjct 1 PLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARASIHSYVS 60
Query 78 NLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGVHAAAAGRFEQASRH 137
NLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNT DLGRFVAEKTAGVHAAAAGRFEQASRH
Sbjct 61 NLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTYDLGRFVAEKTAGVHAAAAGRFEQASRH 120
Query 138 LSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEAL 197
LSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEAL
Sbjct 121 LSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEAL 180
Query 198 TFEHPYREPLWTQLITAYYLSD 219
TFEHPYREPLWTQLITAYYLSD
Sbjct 181 TFEHPYREPLWTQLITAYYLSD 202
>gi|111017531|ref|YP_700503.1| EmbR family transcriptional regulator [Rhodococcus jostii RHA1]
gi|110817061|gb|ABG92345.1| probable transcriptional regulator, EmbR family protein [Rhodococcus
jostii RHA1]
Length=377
Score = 405 bits (1040), Expect = 7e-111, Method: Compositional matrix adjust.
Identities = 216/372 (59%), Positives = 261/372 (71%), Gaps = 9/372 (2%)
Query 11 LDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARA 70
L F +LGP+QMTIDG P G PKQRAVLA L+INRN PV +AL +W PP ARA
Sbjct 10 LHFDVLGPVQMTIDGIAPPLGGPKQRAVLAALIINRNHPVSAEALADRVWNHRPPPEARA 69
Query 71 SIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGVHAAAAGR 130
S+ ++SNLR++L AG+D R VLA+APPGYRL +PD CDLGRF+AEK AG AAAA R
Sbjct 70 SLQVFISNLRRILRHAGVDARAVLASAPPGYRLIVPDQGCDLGRFLAEKRAGTQAAAARR 129
Query 131 FEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 190
FE AS HL+AAL EW+GP LDDLRD +F E FA A+ E+KV A A+AEAEI CGRA AV
Sbjct 130 FEDASGHLAAALAEWKGPALDDLRDLEFAETFAAAIEEEKVSALAARAEAEIVCGRAEAV 189
Query 191 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250
I EL +L +P+REPLW QLITA Y+ RQSDAL A RR+++ LA++LGIDPG L L
Sbjct 190 IPELVSLASVYPHREPLWGQLITALYVCGRQSDALEACRRLRSNLAEELGIDPGRDLLEL 249
Query 251 NERILRQQPLDAKKSAKTTAAGTVTVLD--QRTMASGQQAVAYLHDIASGRGYPLQAAAT 308
RILRQ+ L ++A TAA TVTVL+ +R +A A L D G + + +A
Sbjct 250 EGRILRQESLAVTETALATAAHTVTVLETLERALA------AQLRD-RQGHVFRIGSAGV 302
Query 309 RIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSAVTLNDGDH 368
RIGR+ DNDIVL VSRHH +IVDTG N+V+ DLRSSNGV+V R+ +V L DGD
Sbjct 303 RIGRMPDNDIVLAQGKVSRHHTIIVDTGMNFVLRDLRSSNGVYVGGNRVVDSVWLVDGDI 362
Query 369 IRICDHEFTFQI 380
IRI D E FQI
Sbjct 363 IRIGDTELEFQI 374
>gi|124491169|gb|ABN12919.1| EmbR [Mycobacterium tuberculosis]
Length=200
Score = 403 bits (1035), Expect = 3e-110, Method: Compositional matrix adjust.
Identities = 199/200 (99%), Positives = 199/200 (99%), Gaps = 0/200 (0%)
Query 153 LRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLI 212
LRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLI
Sbjct 1 LRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLI 60
Query 213 TAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERILRQQPLDAKKSAKTTAAG 272
TAYYLSDRQSDALGAYRRVKTTLADDL IDPGPTLRALNERILRQQPLDAKKSAKTTAAG
Sbjct 61 TAYYLSDRQSDALGAYRRVKTTLADDLRIDPGPTLRALNERILRQQPLDAKKSAKTTAAG 120
Query 273 TVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAATRIGRLHDNDIVLDSANVSRHHAVI 332
TVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAATRIGRLHDNDIVLDSANVSRHHAVI
Sbjct 121 TVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAATRIGRLHDNDIVLDSANVSRHHAVI 180
Query 333 VDTGTNYVINDLRSSNGVHV 352
VDTGTNYVINDLRSSNGVHV
Sbjct 181 VDTGTNYVINDLRSSNGVHV 200
>gi|124491175|gb|ABN12922.1| EmbR [Mycobacterium tuberculosis]
Length=200
Score = 401 bits (1030), Expect = 1e-109, Method: Compositional matrix adjust.
Identities = 198/200 (99%), Positives = 198/200 (99%), Gaps = 0/200 (0%)
Query 172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231
LAHT KAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV
Sbjct 1 LAHTVKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 60
Query 232 KTTLADDLGIDPGPTLRALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAY 291
KTTLADDLGIDPGPTLRALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAY
Sbjct 61 KTTLADDLGIDPGPTLRALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAY 120
Query 292 LHDIASGRGYPLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVH 351
LHDIASGRGYPLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVH
Sbjct 121 LHDIASGRGYPLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVH 180
Query 352 VQHERIRSAVTLNDGDHIRI 371
VQHERIRSAVTLNDGDH RI
Sbjct 181 VQHERIRSAVTLNDGDHTRI 200
>gi|124491179|gb|ABN12924.1| EmbR [Mycobacterium tuberculosis]
Length=199
Score = 395 bits (1016), Expect = 5e-108, Method: Compositional matrix adjust.
Identities = 196/199 (99%), Positives = 196/199 (99%), Gaps = 0/199 (0%)
Query 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232
AHT KAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYR VK
Sbjct 1 AHTVKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRWVK 60
Query 233 TTLADDLGIDPGPTLRALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYL 292
TTLADDLGIDPGPTLRALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYL
Sbjct 61 TTLADDLGIDPGPTLRALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYL 120
Query 293 HDIASGRGYPLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHV 352
HDIASGRGYPLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHV
Sbjct 121 HDIASGRGYPLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHV 180
Query 353 QHERIRSAVTLNDGDHIRI 371
QHERIRSAVTLNDGDH RI
Sbjct 181 QHERIRSAVTLNDGDHTRI 199
>gi|124491173|gb|ABN12921.1| EmbR [Mycobacterium tuberculosis]
Length=195
Score = 391 bits (1004), Expect = 1e-106, Method: Compositional matrix adjust.
Identities = 194/195 (99%), Positives = 194/195 (99%), Gaps = 0/195 (0%)
Query 177 KAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLA 236
KAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYR VKTTLA
Sbjct 1 KAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRWVKTTLA 60
Query 237 DDLGIDPGPTLRALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIA 296
DDLGIDPGPTLRALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIA
Sbjct 61 DDLGIDPGPTLRALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIA 120
Query 297 SGRGYPLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHER 356
SGRGYPLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHER
Sbjct 121 SGRGYPLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHER 180
Query 357 IRSAVTLNDGDHIRI 371
IRSAVTLNDGDHIRI
Sbjct 181 IRSAVTLNDGDHIRI 195
>gi|124491165|gb|ABN12917.1| EmbR [Mycobacterium tuberculosis]
Length=191
Score = 384 bits (985), Expect = 2e-104, Method: Compositional matrix adjust.
Identities = 188/191 (99%), Positives = 190/191 (99%), Gaps = 0/191 (0%)
Query 181 EIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLG 240
EIACGRA AVIAELEALTFEHPYREPLWTQ+ITAYYLSDRQSDALGAYRRVKTTLADDLG
Sbjct 1 EIACGRARAVIAELEALTFEHPYREPLWTQMITAYYLSDRQSDALGAYRRVKTTLADDLG 60
Query 241 IDPGPTLRALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRG 300
IDPGPTLRALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRG
Sbjct 61 IDPGPTLRALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRG 120
Query 301 YPLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSA 360
YPLQAAATRIGRLHDNDIV+DSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSA
Sbjct 121 YPLQAAATRIGRLHDNDIVVDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSA 180
Query 361 VTLNDGDHIRI 371
VTLNDGDHIRI
Sbjct 181 VTLNDGDHIRI 191
>gi|124491167|gb|ABN12918.1| EmbR [Mycobacterium tuberculosis]
Length=185
Score = 369 bits (948), Expect = 4e-100, Method: Compositional matrix adjust.
Identities = 183/185 (99%), Positives = 183/185 (99%), Gaps = 0/185 (0%)
Query 187 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246
A AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT
Sbjct 1 ARAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 60
Query 247 LRALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAA 306
LRALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAA
Sbjct 61 LRALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAA 120
Query 307 ATRIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSAVTLNDG 366
ATRIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSAVTLNDG
Sbjct 121 ATRIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSAVTLNDG 180
Query 367 DHIRI 371
DH RI
Sbjct 181 DHTRI 185
>gi|308377303|ref|ZP_07668478.1| transcriptional regulatory protein [Mycobacterium tuberculosis
SUMu008]
gi|308348439|gb|EFP37290.1| transcriptional regulatory protein [Mycobacterium tuberculosis
SUMu008]
Length=333
Score = 362 bits (928), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 179/316 (57%), Positives = 231/316 (74%), Gaps = 1/316 (0%)
Query 11 LDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARA 70
L FG+LGPL+++ +P GTPKQRAVLA L+I+RNRPVG+D+LI A WE+ P G+RA
Sbjct 6 LRFGILGPLEISAGFRSLPLGTPKQRAVLATLIIHRNRPVGIDSLIDAAWEQDRPEGSRA 65
Query 71 SIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGVHAAAAGR 130
++++YVSNLR+L+ G D +LA+APPGYRL++ DN D+ RF+++++AG+ AAAAG
Sbjct 66 TVYTYVSNLRRLVSTTGADSHSILASAPPGYRLAVADNQYDVARFISQRSAGLRAAAAGS 125
Query 131 FEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 190
FEQAS HLSAAL EWRGPVLDDLR+F FV A +LVEDK++AHTA AEAEIACGRA +V
Sbjct 126 FEQASDHLSAALAEWRGPVLDDLREFSFVTRLANSLVEDKIIAHTALAEAEIACGRADSV 185
Query 191 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250
I+ELE L EHPY E LW QLI AYY+S+RQSDAL AYRR+KT+LA+DLG+DPGP +R L
Sbjct 186 ISELEELILEHPYHEALWRQLIAAYYVSERQSDALDAYRRLKTSLAEDLGVDPGPKVRTL 245
Query 251 NERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAATRI 310
E++LRQQ LD + + A + L+ + + A + D A+G PL RI
Sbjct 246 YEQVLRQQALDTRVVVQAAAGDIIRALEHSPGMTDRSPRAAIRD-AAGHRSPLGRLPLRI 304
Query 311 GRLHDNDIVLDSANVS 326
GR ND+VL VS
Sbjct 305 GRSKSNDMVLPDGKVS 320
>gi|308371311|ref|ZP_07667133.1| transcriptional regulatory protein [Mycobacterium tuberculosis
SUMu003]
gi|308329350|gb|EFP18201.1| transcriptional regulatory protein [Mycobacterium tuberculosis
SUMu003]
Length=334
Score = 362 bits (928), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 179/316 (57%), Positives = 231/316 (74%), Gaps = 1/316 (0%)
Query 11 LDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARA 70
L FG+LGPL+++ +P GTPKQRAVLA L+I+RNRPVG+D+LI A WE+ P G+RA
Sbjct 7 LRFGILGPLEISAGFRSLPLGTPKQRAVLATLIIHRNRPVGIDSLIDAAWEQDRPEGSRA 66
Query 71 SIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGVHAAAAGR 130
++++YVSNLR+L+ G D +LA+APPGYRL++ DN D+ RF+++++AG+ AAAAG
Sbjct 67 TVYTYVSNLRRLVSTTGADSHSILASAPPGYRLAVADNQYDVARFISQRSAGLRAAAAGS 126
Query 131 FEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 190
FEQAS HLSAAL EWRGPVLDDLR+F FV A +LVEDK++AHTA AEAEIACGRA +V
Sbjct 127 FEQASDHLSAALAEWRGPVLDDLREFSFVTRLANSLVEDKIIAHTALAEAEIACGRADSV 186
Query 191 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250
I+ELE L EHPY E LW QLI AYY+S+RQSDAL AYRR+KT+LA+DLG+DPGP +R L
Sbjct 187 ISELEELILEHPYHEALWRQLIAAYYVSERQSDALDAYRRLKTSLAEDLGVDPGPKVRTL 246
Query 251 NERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAATRI 310
E++LRQQ LD + + A + L+ + + A + D A+G PL RI
Sbjct 247 YEQVLRQQALDTRVVVQAAAGDIIRALEHSPGMTDRSPRAAIRD-AAGHRSPLGRLPLRI 305
Query 311 GRLHDNDIVLDSANVS 326
GR ND+VL VS
Sbjct 306 GRSKSNDMVLPDGKVS 321
>gi|111026922|ref|YP_708900.1| transcriptional regulator [Rhodococcus jostii RHA1]
gi|110825461|gb|ABH00742.1| probable transcriptional regulator [Rhodococcus jostii RHA1]
Length=377
Score = 337 bits (864), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 194/375 (52%), Positives = 245/375 (66%), Gaps = 12/375 (3%)
Query 7 VEKRLDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPS 66
+ RL +LG +++TIDG P G K RAVLAML+I R R V DAL A W + PP
Sbjct 11 IRHRLGLHVLGAVELTIDGAPQSLGGTKPRAVLAMLLIRRGRVVAADALAAAAWNDDPPP 70
Query 67 GARASIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGVHAA 126
RAS+H VS LRK LGGA +DP+ VLA A PGYRLS+ D+ DL RF A + G A
Sbjct 71 DYRASLHVIVSKLRKALGGADVDPKTVLATAAPGYRLSVADDDFDLARFRALSSTGGRLA 130
Query 127 AAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGR 186
AG+FE+AS LS AL EW+GPVLDDLR F + FA L E+ + +A+ +AEIACGR
Sbjct 131 EAGQFEEASAALSHALDEWKGPVLDDLRGHSFADAFAATLEEELLATASARTQAEIACGR 190
Query 187 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246
A +VI+ L LT EHP REPLW QLITA YL+ RQSDAL A RR++TTLAD+LGIDP
Sbjct 191 AESVISTLIDLTNEHPLREPLWAQLITALYLAGRQSDALDACRRLRTTLADELGIDPSGP 250
Query 247 LRALNERILRQQPLDAKKSAKTTAAGTVTVLDQRT-MASGQQAVAYLHDIASGRGYPLQA 305
L+ L +RIL Q+PL TT A T+T+++Q+ +A+GQ L D A G P+
Sbjct 251 LQDLEKRILNQEPLTV-----TTGAMTLTLIEQQQRVATGQ-----LRDRA-GTAIPIPP 299
Query 306 AATRIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSAVTLND 365
RIGR + ND+VL NVSR+HA++V TG Y I DL+SSNG + ERI +V L
Sbjct 300 GGLRIGRKNTNDLVLSHRNVSRYHAIVVATGPRYEIRDLQSSNGTLINGERIIDSVVLGH 359
Query 366 GDHIRICDHEFTFQI 380
GD IRI E++F++
Sbjct 360 GDVIRIGSTEWSFEV 374
>gi|124491161|gb|ABN12915.1| EmbR [Mycobacterium tuberculosis]
Length=167
Score = 332 bits (850), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 165/167 (99%), Positives = 165/167 (99%), Gaps = 0/167 (0%)
Query 205 EPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERILRQQPLDAKK 264
EPLWTQLITAYYLSDRQSDALGAYR VKTTLADDLGIDPGPTLRALNERILRQQPLDAKK
Sbjct 1 EPLWTQLITAYYLSDRQSDALGAYRWVKTTLADDLGIDPGPTLRALNERILRQQPLDAKK 60
Query 265 SAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAATRIGRLHDNDIVLDSAN 324
SAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAATRIGRLHDNDIVLDSAN
Sbjct 61 SAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAATRIGRLHDNDIVLDSAN 120
Query 325 VSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSAVTLNDGDHIRI 371
VSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSAVTLNDGDH RI
Sbjct 121 VSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSAVTLNDGDHTRI 167
>gi|54027355|ref|YP_121597.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
gi|54018863|dbj|BAD60233.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
Length=371
Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 181/373 (49%), Positives = 234/373 (63%), Gaps = 11/373 (2%)
Query 11 LDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARA 70
LD +LGP+++ + G PV G PK RA+LA L +NR R V AL +W E PP A
Sbjct 3 LDVRVLGPVRLFVGGEPVAVGGPKPRALLAALTVNRRRAVASSALADMVWNEDPPDSYAA 62
Query 71 SIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGVHAAAAGR 130
S+ +VSN+RK L +G+DP VL GYRL IP++ CD+GRF A AG AA G
Sbjct 63 SLQVFVSNIRKALRNSGVDPAQVLRTESSGYRLEIPEDACDIGRFEAACAAGAKAADLGD 122
Query 131 FEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 190
+A++ AL EW G + DL QF + FATA+ E+++LA +A+ +AEIACGRAS+V
Sbjct 123 QVRAAQLYGKALDEWSGRAMSDLAGLQFADGFATAMEEERLLAASARIDAEIACGRASSV 182
Query 191 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250
I EL +T EHP REPLW QLITA YLS RQ+DAL A RRV+T LAD+LGIDPGP L L
Sbjct 183 IGELVTMTTEHPLREPLWGQLITALYLSGRQADALDACRRVRTVLADELGIDPGPALVEL 242
Query 251 NERILRQQPL---DAKKSAKTTAAGTVTVLD-QRTMASGQQAVAYLHDIASGRGYPLQAA 306
+R+LRQ+PL + K+ + AA T TV + R + SGQ + GR P+ A
Sbjct 243 EQRVLRQEPLSTKEFKRVERMAAAMTETVTEGPRAVRSGQ------LRLPDGRALPISHA 296
Query 307 ATRIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSAVTLNDG 366
RIGR+ DND+VLD SR+HA I+ + +I DL S+NGV++ E I SA+ L DG
Sbjct 297 GMRIGRMIDNDLVLDDPKASRYHAHILPSRAGLLIKDLHSANGVYINEEPIESAL-LGDG 355
Query 367 DHIRICDHEFTFQ 379
D IRI FQ
Sbjct 356 DMIRIGATVLIFQ 368
>gi|183980951|ref|YP_001849242.1| transcriptional regulatory protein EmbR_2 [Mycobacterium marinum
M]
gi|183174277|gb|ACC39387.1| transcriptional regulatory protein EmbR_2 [Mycobacterium marinum
M]
Length=276
Score = 311 bits (798), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 157/273 (58%), Positives = 196/273 (72%), Gaps = 1/273 (0%)
Query 8 EKRLDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSG 67
E L FG+LGPL++ +P GTPKQRAVLAMLVI+RNR VGVD LI A WE+ PP
Sbjct 3 EGCLQFGILGPLELYSADIVMPLGTPKQRAVLAMLVIHRNRTVGVDRLIDAAWEKRPPER 62
Query 68 ARASIHSYVSNLRKLLGGA-GIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGVHAA 126
ARA++H+YVSNLR+L+ ID R VL++APPGYRLS+ DN CDLGRF E++ G AA
Sbjct 63 ARATLHTYVSNLRRLIDTCLCIDARAVLSSAPPGYRLSVADNDCDLGRFTVERSNGFRAA 122
Query 127 AAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGR 186
GRFEQAS H SAAL +WRGP+L+DL +F F + AT L EDK+L A A EIACGR
Sbjct 123 TLGRFEQASDHFSAALAQWRGPILEDLPEFTFFDESATRLEEDKLLTQIAYATTEIACGR 182
Query 187 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246
+ I ELE L EHPY EPLW LITAYY+++RQ DAL A R++ +LA+DLGI PGPT
Sbjct 183 PYSAINELEELATEHPYHEPLWVPLITAYYVAERQFDALNACRQLTRSLAEDLGIAPGPT 242
Query 247 LRALNERILRQQPLDAKKSAKTTAAGTVTVLDQ 279
+RAL E+ILRQ+ + ++A+ A T+ L +
Sbjct 243 IRALQEQILRQEQPNVTEAAQLHAHRTIAALQK 275
>gi|148824317|ref|YP_001289071.1| transcriptional regulator [Mycobacterium tuberculosis F11]
gi|253800156|ref|YP_003033157.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435]
gi|289555398|ref|ZP_06444608.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605]
14 more sequence titles
Length=297
Score = 298 bits (763), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 141/259 (55%), Positives = 190/259 (74%), Gaps = 1/259 (0%)
Query 4 SATVEKRLDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEW 63
+AT + F +LGPL++ + GT +P GTPKQRAVLAML+++RN+ V DAL+ A+WE+
Sbjct 2 NATTAGAVQFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKS 61
Query 64 PPSGARASIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPD-NTCDLGRFVAEKTAG 122
PP+ AR ++H+Y+ NLR+ L AG+D R +L + PPGYRL I D CDL RFVA K +G
Sbjct 62 PPARARRTVHTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESG 121
Query 123 VHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEI 182
+ A+A G F +A R+L +AL+ WRGPVL DLR F FV+ F+ AL ED++L HT AEA I
Sbjct 122 LRASAKGYFSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAI 181
Query 183 ACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID 242
ACGRA VI +LE L HPYRE LW QL+ YY+++ QS A+ AY R+K+TLA++LG++
Sbjct 182 ACGRADVVIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVE 241
Query 243 PGPTLRALNERILRQQPLD 261
P PT+RAL +ILRQ P+D
Sbjct 242 PAPTIRALYHKILRQLPMD 260
>gi|15842697|ref|NP_337734.1| AfsR/DnrI/RedD family transcriptional regulator [Mycobacterium
tuberculosis CDC1551]
gi|254233748|ref|ZP_04927073.1| hypothetical protein TBCG_03061 [Mycobacterium tuberculosis C]
gi|308232344|ref|ZP_07415775.2| transcriptional regulator [Mycobacterium tuberculosis SUMu001]
20 more sequence titles
Length=311
Score = 298 bits (762), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 141/259 (55%), Positives = 190/259 (74%), Gaps = 1/259 (0%)
Query 4 SATVEKRLDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEW 63
+AT + F +LGPL++ + GT +P GTPKQRAVLAML+++RN+ V DAL+ A+WE+
Sbjct 16 NATTAGAVQFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKS 75
Query 64 PPSGARASIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPD-NTCDLGRFVAEKTAG 122
PP+ AR ++H+Y+ NLR+ L AG+D R +L + PPGYRL I D CDL RFVA K +G
Sbjct 76 PPARARRTVHTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESG 135
Query 123 VHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEI 182
+ A+A G F +A R+L +AL+ WRGPVL DLR F FV+ F+ AL ED++L HT AEA I
Sbjct 136 LRASAKGYFSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAI 195
Query 183 ACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID 242
ACGRA VI +LE L HPYRE LW QL+ YY+++ QS A+ AY R+K+TLA++LG++
Sbjct 196 ACGRADVVIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVE 255
Query 243 PGPTLRALNERILRQQPLD 261
P PT+RAL +ILRQ P+D
Sbjct 256 PAPTIRALYHKILRQLPMD 274
>gi|15610261|ref|NP_217640.1| transcriptional regulatory protein [Mycobacterium tuberculosis
H37Rv]
gi|31794299|ref|NP_856792.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97]
gi|148662978|ref|YP_001284501.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis
H37Ra]
31 more sequence titles
Length=289
Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 139/252 (56%), Positives = 187/252 (75%), Gaps = 1/252 (0%)
Query 11 LDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARA 70
+ F +LGPL++ + GT +P GTPKQRAVLAML+++RN+ V DAL+ A+WE+ PP+ AR
Sbjct 1 MQFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARR 60
Query 71 SIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPD-NTCDLGRFVAEKTAGVHAAAAG 129
++H+Y+ NLR+ L AG+D R +L + PPGYRL I D CDL RFVA K +G+ A+A G
Sbjct 61 TVHTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKG 120
Query 130 RFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASA 189
F +A R+L +AL+ WRGPVL DLR F FV+ F+ AL ED++L HT AEA IACGRA
Sbjct 121 YFSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTEDELLVHTKLAEAAIACGRADV 180
Query 190 VIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249
VI +LE L HPYRE LW QL+ YY+++ QS A+ AY R+K+TLA++LG++P PT+RA
Sbjct 181 VIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRA 240
Query 250 LNERILRQQPLD 261
L +ILRQ P+D
Sbjct 241 LYHKILRQLPMD 252
>gi|121639005|ref|YP_979229.1| putative transcriptional regulatory protein [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|224991497|ref|YP_002646186.1| putative transcriptional regulatory protein [Mycobacterium bovis
BCG str. Tokyo 172]
gi|121494653|emb|CAL73134.1| Probable transcriptional regulatory protein [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|224774612|dbj|BAH27418.1| putative transcriptional regulatory protein [Mycobacterium bovis
BCG str. Tokyo 172]
gi|341603044|emb|CCC65722.1| probable transcriptional regulatory protein [Mycobacterium bovis
BCG str. Moreau RDJ]
Length=289
Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 138/252 (55%), Positives = 186/252 (74%), Gaps = 1/252 (0%)
Query 11 LDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARA 70
+ F +LGPL++ + GT +P GTPKQRAVLAML+++RN+ V DAL+ A+WE+ PP+ AR
Sbjct 1 MQFNVLGPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARR 60
Query 71 SIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPD-NTCDLGRFVAEKTAGVHAAAAG 129
++H+Y+ NLR+ L AG+D R +L + PPGYRL I D CDL RFVA K +G+ A+A G
Sbjct 61 TVHTYICNLRRTLSDAGVDSRNILVSEPPGYRLLIGDRQQCDLDRFVAAKESGLRASAKG 120
Query 130 RFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASA 189
F +A R+L +AL+ WRGPVL DLR F FV+ F+ AL D++L HT AEA IACGRA
Sbjct 121 YFSEAIRYLDSALQNWRGPVLGDLRSFMFVQMFSRALTGDELLVHTKLAEAAIACGRADV 180
Query 190 VIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249
VI +LE L HPYRE LW QL+ YY+++ QS A+ AY R+K+TLA++LG++P PT+RA
Sbjct 181 VIPKLERLVAMHPYRESLWKQLMLGYYVNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRA 240
Query 250 LNERILRQQPLD 261
L +ILRQ P+D
Sbjct 241 LYHKILRQLPMD 252
>gi|296138442|ref|YP_003645685.1| SARP family transcriptional regulator [Tsukamurella paurometabola
DSM 20162]
gi|296026576|gb|ADG77346.1| transcriptional regulator, SARP family [Tsukamurella paurometabola
DSM 20162]
Length=379
Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 157/379 (42%), Positives = 221/379 (59%), Gaps = 16/379 (4%)
Query 11 LDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARA 70
LD +LG + +++DG P K R+VLA+LV+NR R V VD+L +W+ PP+ ARA
Sbjct 4 LDIRVLGQVSLSVDGAPNEVSGVKPRSVLALLVMNRGRAVTVDSLSEQVWDGNPPASARA 63
Query 71 SIHSYVSNLRKLL----GGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGVHAA 126
S+ +VS LRK L G+G+D +V + + YRL + + D+GRF A + G A
Sbjct 64 SLQVFVSGLRKALRGPGAGSGLDALLVTSGST--YRLDLEPDQSDVGRFDAARRRGAELA 121
Query 127 AAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGR 186
AAGRF+QAS ++AL E+RG + DLR QF + FA + E++ +A +AEIA GR
Sbjct 122 AAGRFDQASLMFASALAEFRGDAVADLRGLQFADNFAIGMAEERAAVQSAMYDAEIAAGR 181
Query 187 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246
A +VI +L L EHP +EPLW QLITA Y++ RQ+DAL A R ++ TLAD+LG DP P
Sbjct 182 AGSVIGDLRRLVSEHPLQEPLWGQLITALYVTGRQADALEAARELRRTLADELGADPTPA 241
Query 247 LRALNERILRQQPLDAKKSAKTTAAGT-----VTVLDQRTMASGQQAVAYLHDIASGRGY 301
L L ++LRQ+ L A + GT T D +SG + + D G Y
Sbjct 242 LVELEGKVLRQEQL-AFAQVRPAQPGTGRAFEKTETDAAADSSGPRGLLIASD---GTEY 297
Query 302 PLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSAV 361
P+ R+GRL DND+ +D VSR HAVI + + + DL SSNG V R+ +
Sbjct 298 PVH-GEIRLGRLPDNDVSVDDTKVSREHAVITGAVSGFAVRDLMSSNGTFVGERRVAGQM 356
Query 362 TLNDGDHIRICDHEFTFQI 380
L+DGD + + FTF++
Sbjct 357 PLSDGDELTLGRTTFTFRV 375
>gi|167970210|ref|ZP_02552487.1| transcriptional regulator, AfsR/DnrI/RedD family protein [Mycobacterium
tuberculosis H37Ra]
gi|254552209|ref|ZP_05142656.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
Length=262
Score = 262 bits (669), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 123/225 (55%), Positives = 166/225 (74%), Gaps = 1/225 (0%)
Query 38 VLAMLVINRNRPVGVDALITALWEEWPPSGARASIHSYVSNLRKLLGGAGIDPRVVLAAA 97
+LAML+++RN+ V DAL+ A+WE+ PP+ AR ++H+Y+ NLR+ L AG+D R +L +
Sbjct 1 MLAMLLLSRNQVVAADALVQAIWEKSPPARARRTVHTYICNLRRTLSDAGVDSRNILVSE 60
Query 98 PPGYRLSIPD-NTCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDF 156
PPGYRL I D CDL RFVA K +G+ A+A G F +A R+L +AL+ WRGPVL DLR F
Sbjct 61 PPGYRLLIGDRQQCDLDRFVAAKESGLRASAKGYFSEAIRYLDSALQNWRGPVLGDLRSF 120
Query 157 QFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYY 216
FV+ F+ AL ED++L HT AEA IACGRA VI +LE L HPYRE LW QL+ YY
Sbjct 121 MFVQMFSRALTEDELLVHTKLAEAAIACGRADVVIPKLERLVAMHPYRESLWKQLMLGYY 180
Query 217 LSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERILRQQPLD 261
+++ QS A+ AY R+K+TLA++LG++P PT+RAL +ILRQ P+D
Sbjct 181 VNEYQSAAIDAYHRLKSTLAEELGVEPAPTIRALYHKILRQLPMD 225
>gi|258652403|ref|YP_003201559.1| SARP family transcriptional regulator [Nakamurella multipartita
DSM 44233]
gi|258555628|gb|ACV78570.1| transcriptional regulator, SARP family [Nakamurella multipartita
DSM 44233]
Length=385
Score = 258 bits (660), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 157/377 (42%), Positives = 222/377 (59%), Gaps = 9/377 (2%)
Query 7 VEKRLDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPS 66
V LD LLGPL++ +DG P+P K +AVLA L+++RNR V D+L A+W+ P+
Sbjct 14 VSPTLDVRLLGPLELRLDGRPIPLPGGKPKAVLAGLLVSRNRVVPADSLADAIWDGEVPA 73
Query 67 GARASIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGVHAA 126
A++ +VS LR+ L + + PGYR+ + D D+GRF AG
Sbjct 74 NFLATLQVHVSALRRALRPVSDPGLLTVTTQSPGYRVVVDDALVDVGRFGRWARAGSDLL 133
Query 127 AAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGR 186
A R+ +A+ L AAL EW G L DL+ +F + FA A+ E++++A A+ EA++ACG
Sbjct 134 TARRYAEAADRLRAALAEWSGSALADLQGLRFADDFAAAVEEERLVALQARIEADLACGM 193
Query 187 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246
SAV+ EL LT ++P REP W QLITA Y S RQ+DAL A RR++T L D+LGIDP P
Sbjct 194 ESAVVGELVTLTGQYPLREPFWIQLITALYRSGRQADALDAARRIRTLLDDELGIDPSPA 253
Query 247 LRALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLH-DIASGRGYPLQA 305
LR L ++LRQ+ L A A + QRT+A ++ + SG P+ +
Sbjct 254 LRDLERQVLRQE-LAAPGPAPVPSM-------QRTVAETAVVLSKARVRLPSGESLPVPS 305
Query 306 AATRIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSAVTLND 365
R+GR+ DND+V+ VSR+HAVI ++ + + DLRS+NG HV ER+ + L D
Sbjct 306 RGLRLGRMDDNDLVIAGEKVSRYHAVIGESANGFTVTDLRSTNGTHVNDERVVESHLLRD 365
Query 366 GDHIRICDHEFTFQISA 382
GD IRI E TFQ+ A
Sbjct 366 GDRIRIGGTELTFQLDA 382
>gi|300788234|ref|YP_003768525.1| SARP family transcriptional regulator [Amycolatopsis mediterranei
U32]
gi|299797748|gb|ADJ48123.1| SARP family transcriptional regulator [Amycolatopsis mediterranei
U32]
gi|340529819|gb|AEK45024.1| SARP family transcriptional regulator [Amycolatopsis mediterranei
S699]
Length=998
Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 103/245 (43%), Positives = 146/245 (60%), Gaps = 5/245 (2%)
Query 11 LDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARA 70
++F LLG + + + G VP G PK R +LA+L++N R V VD LITALW E PP+ AR+
Sbjct 1 MEFRLLGSMAVLVAGEQVPLGGPKPRTLLAVLLVNAGRVVPVDTLITALWGENPPNSARS 60
Query 71 SIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGVHAAAAGR 130
+H+YVS LR++LG D L PGY L + + DL RF +AG A AAG
Sbjct 61 VVHTYVSALRRMLG----DRDDALRRQAPGYLLDVAPESIDLVRFERVVSAGCRALAAGD 116
Query 131 FEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 190
++AS L+ AL W GP L + ++ E T L E +++A A+ EA+ GRA A+
Sbjct 117 AQRASATLTEALGLWSGPPLGGA-EGEWAETERTKLAEARLVAVEARLEADFRLGRAGAL 175
Query 191 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250
EL L EHP REPL +LI A + + RQ+DAL + + + L D+LG++PGP L+A
Sbjct 176 TGELTELVAEHPLREPLRAKLILALHQAGRQADALATFHQARRLLDDELGVEPGPQLQAA 235
Query 251 NERIL 255
+ +L
Sbjct 236 FQTVL 240
>gi|271962756|ref|YP_003336952.1| SARP family transcriptional regulator [Streptosporangium roseum
DSM 43021]
gi|270505931|gb|ACZ84209.1| transcriptional regulator, SARP family [Streptosporangium roseum
DSM 43021]
Length=378
Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 116/304 (39%), Positives = 153/304 (51%), Gaps = 22/304 (7%)
Query 11 LDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARA 70
+FG+LGPL+ G PV G KQR +LA L+I+ NR V V+ L LW E PP GAR
Sbjct 15 FEFGVLGPLRALRGGDPVAIGAAKQRVLLASLLIDANRVVPVETLTARLWGEAPPCGARN 74
Query 71 SIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGVHAAAAGR 130
++ +YV LR++LGGAG V+ P GY + + D DL RF A A AAG
Sbjct 75 ALQNYVMRLRRVLGGAGGSDPVL--TRPQGYLIGVADEAVDLHRFDALVRRARTAVAAGG 132
Query 131 FEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 190
EQAS L AL WRG L D+ A AL E ++ A + +A++A GR V
Sbjct 133 AEQASALLREALGLWRGQPLSDVPSELLQREVAPALAERRLGAVELRIQADLALGRHGDV 192
Query 191 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250
+ EL LT HP RE W Q + A Y S R+ +AL YR V L+++LGIDPG LR L
Sbjct 193 LPELRELTAAHPLRERFWAQRMLALYRSGRRGEALQCYRTVGELLSEELGIDPGAELREL 252
Query 251 NERILRQQPL--------------------DAKKSAKTTAAGTVTVLDQRTMASGQQAVA 290
+ R+L P DA+ + A T +R +A Q+ +A
Sbjct 253 HRRLLDADPALAGSDPSGGGAPIRPGAGDGDARPAGDLPAGMTTFAGRERQLAEAQRLLA 312
Query 291 YLHD 294
D
Sbjct 313 QARD 316
>gi|256374538|ref|YP_003098198.1| SARP family transcriptional regulator [Actinosynnema mirum DSM
43827]
gi|255918841|gb|ACU34352.1| transcriptional regulator, SARP family [Actinosynnema mirum DSM
43827]
Length=940
Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 105/251 (42%), Positives = 145/251 (58%), Gaps = 13/251 (5%)
Query 11 LDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARA 70
L+FG+LGPL++ DG P+ G RA+LA+LV+ NR V +D L+ LW + PP+ AR
Sbjct 9 LEFGVLGPLRVVADGGPIAIGRRGVRALLAVLVLEANRVVPIDELVDRLWGDEPPATART 68
Query 71 SIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGVHAAAAGR 130
+H YVS LRK+L A + PPGY+L++ D R + + ++A G+
Sbjct 69 IVHGYVSRLRKVLDAADPAGSARILTTPPGYQLAV-----DPWRLDHHRARRLISSARGK 123
Query 131 FEQASRH--LSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRAS 188
SR L ALR WRGPVL D+ + + L E +++A +A AE+ G
Sbjct 124 -PATSRAPLLRDALRLWRGPVLADVPNAP-----GSDLAELRLVALEERAAAELELGHHL 177
Query 189 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248
V+ EL L EHP+RE L Q + A Y S R++DAL AY+R L D+LGIDPGP LR
Sbjct 178 EVVGELRQLVAEHPFRERLVAQAVLALYRSGRRADALDAYQRFHRRLVDELGIDPGPDLR 237
Query 249 ALNERILRQQP 259
AL+ER+LR P
Sbjct 238 ALHERVLRDDP 248
Lambda K H
0.319 0.134 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 758906400850
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40