BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1269c

Length=124
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15840716|ref|NP_335753.1|  hypothetical protein MT1307 [Mycoba...   244    3e-63
gi|15608409|ref|NP_215785.1|  hypothetical protein Rv1269c [Mycob...   244    4e-63
gi|254231526|ref|ZP_04924853.1|  hypothetical protein TBCG_01250 ...   238    3e-61
gi|240173140|ref|ZP_04751798.1|  hypothetical protein MkanA1_2775...   166    1e-39
gi|183984124|ref|YP_001852415.1|  hypothetical protein MMAR_4153 ...   157    7e-37
gi|118619215|ref|YP_907547.1|  hypothetical protein MUL_4016 [Myc...   156    9e-37
gi|289761421|ref|ZP_06520799.1|  conserved secreted protein [Myco...   144    5e-33
gi|183981448|ref|YP_001849739.1|  hypothetical protein MMAR_1426 ...   103    1e-20
gi|183982546|ref|YP_001850837.1|  hypothetical protein MMAR_2533 ...   101    4e-20
gi|294994825|ref|ZP_06800516.1|  hypothetical protein Mtub2_10022...  97.4    6e-19
gi|240173458|ref|ZP_04752116.1|  hypothetical protein MkanA1_2936...  96.3    1e-18
gi|240173178|ref|ZP_04751836.1|  hypothetical protein MkanA1_2794...  94.0    6e-18
gi|296165794|ref|ZP_06848300.1|  conserved hypothetical protein [...  90.5    7e-17
gi|15608950|ref|NP_216329.1|  hypothetical protein Rv1813c [Mycob...  89.0    2e-16
gi|183984691|ref|YP_001852982.1|  hypothetical protein MMAR_4723 ...  83.2    1e-14
gi|240170411|ref|ZP_04749070.1|  hypothetical protein MkanA1_1395...  82.0    2e-14
gi|296140994|ref|YP_003648237.1|  hypothetical protein Tpau_3313 ...  82.0    2e-14
gi|326385281|ref|ZP_08206943.1|  hypothetical protein SCNU_20142 ...  70.1    1e-10
gi|262201902|ref|YP_003273110.1|  hypothetical protein Gbro_1963 ...  69.3    2e-10
gi|119489310|ref|ZP_01622117.1|  hypothetical protein L8106_07641...  66.6    1e-09
gi|209525998|ref|ZP_03274531.1|  conserved hypothetical protein [...  53.1    1e-05
gi|284051993|ref|ZP_06382203.1|  hypothetical protein AplaP_11031...  52.8    2e-05
gi|54025836|ref|YP_120078.1|  hypothetical protein nfa38660 [Noca...  49.3    2e-04
gi|170079327|ref|YP_001735965.1|  serine/threonine-protein kinase...  48.9    2e-04
gi|158336921|ref|YP_001518096.1|  hypothetical protein AM1_3792 [...  48.5    3e-04
gi|3366597|gb|AAC28395.1|  putative open reading frame [Mycobacte...  47.0    9e-04
gi|326381446|ref|ZP_08203140.1|  hypothetical protein SCNU_00805 ...  45.8    0.002
gi|338975179|ref|ZP_08630534.1|  hypothetical protein CSIRO_3644 ...  45.4    0.003
gi|54024135|ref|YP_118377.1|  hypothetical protein nfa21670 [Noca...  45.4    0.003
gi|146340297|ref|YP_001205345.1|  hypothetical protein BRADO3320 ...  45.4    0.003
gi|27379202|ref|NP_770731.1|  hypothetical protein bll4091 [Brady...  45.1    0.003
gi|296164287|ref|ZP_06846873.1|  conserved hypothetical protein [...  43.9    0.007
gi|90423150|ref|YP_531520.1|  hypothetical protein RPC_1639 [Rhod...  43.5    0.012
gi|209884627|ref|YP_002288484.1|  hypothetical protein OCAR_5487 ...  42.7    0.020
gi|299131688|ref|ZP_07024883.1|  conserved hypothetical protein [...  40.4    0.098
gi|158336328|ref|YP_001517502.1|  serine/threonine protein kinase...  39.7    0.14 
gi|338974076|ref|ZP_08629438.1|  hypothetical protein CSIRO_2527 ...  39.3    0.17 
gi|296393827|ref|YP_003658711.1|  hypothetical protein Srot_1416 ...  39.3    0.22 
gi|146339862|ref|YP_001204910.1|  putative signal peptide [Bradyr...  38.9    0.24 
gi|241205439|ref|YP_002976535.1|  hypothetical protein Rleg_2733 ...  38.9    0.24 
gi|84499865|ref|ZP_00998131.1|  30S ribosomal protein S12 [Oceani...  38.9    0.25 
gi|54025524|ref|YP_119766.1|  hypothetical protein nfa35540 [Noca...  38.5    0.33 
gi|148256612|ref|YP_001241197.1|  hypothetical protein BBta_5310 ...  38.5    0.36 
gi|86750611|ref|YP_487107.1|  peptidase C14, caspase catalytic su...  37.7    0.51 
gi|269120983|ref|YP_003309160.1|  hypothetical protein Sterm_2376...  37.4    0.80 
gi|262201100|ref|YP_003272308.1|  hypothetical protein Gbro_1107 ...  37.0    0.90 
gi|119868707|ref|YP_938659.1|  hypothetical protein Mkms_2674 [My...  36.6    1.3  
gi|126435238|ref|YP_001070929.1|  hypothetical protein Mjls_2658 ...  36.6    1.4  
gi|339502098|ref|YP_004689518.1|  hypothetical protein RLO149_c00...  36.2    1.7  
gi|91976267|ref|YP_568926.1|  hypothetical protein RPD_1789 [Rhod...  35.8    2.4  


>gi|15840716|ref|NP_335753.1| hypothetical protein MT1307 [Mycobacterium tuberculosis CDC1551]
 gi|13880905|gb|AAK45567.1| hypothetical protein MT1307 [Mycobacterium tuberculosis CDC1551]
Length=140

 Score =  244 bits (623),  Expect = 3e-63, Method: Compositional matrix adjust.
 Identities = 124/124 (100%), Positives = 124/124 (100%), Gaps = 0/124 (0%)

Query  1    MTTMITLRRRFAVAVAGVATAAATTVTLAPAPANAADVYGAIAYSGNGSWGRSWDYPTRA  60
            MTTMITLRRRFAVAVAGVATAAATTVTLAPAPANAADVYGAIAYSGNGSWGRSWDYPTRA
Sbjct  17   MTTMITLRRRFAVAVAGVATAAATTVTLAPAPANAADVYGAIAYSGNGSWGRSWDYPTRA  76

Query  61   AAEATAVKSCGYSDCKVLTSFTACGAVAANDRAYQGGVGPTLAAAMKDALTKLGGGYIDT  120
            AAEATAVKSCGYSDCKVLTSFTACGAVAANDRAYQGGVGPTLAAAMKDALTKLGGGYIDT
Sbjct  77   AAEATAVKSCGYSDCKVLTSFTACGAVAANDRAYQGGVGPTLAAAMKDALTKLGGGYIDT  136

Query  121  WACN  124
            WACN
Sbjct  137  WACN  140


>gi|15608409|ref|NP_215785.1| hypothetical protein Rv1269c [Mycobacterium tuberculosis H37Rv]
 gi|31792461|ref|NP_854954.1| hypothetical protein Mb1300c [Mycobacterium bovis AF2122/97]
 gi|121637197|ref|YP_977420.1| hypothetical protein BCG_1328c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 43 more sequence titles
 Length=124

 Score =  244 bits (622),  Expect = 4e-63, Method: Compositional matrix adjust.
 Identities = 124/124 (100%), Positives = 124/124 (100%), Gaps = 0/124 (0%)

Query  1    MTTMITLRRRFAVAVAGVATAAATTVTLAPAPANAADVYGAIAYSGNGSWGRSWDYPTRA  60
            MTTMITLRRRFAVAVAGVATAAATTVTLAPAPANAADVYGAIAYSGNGSWGRSWDYPTRA
Sbjct  1    MTTMITLRRRFAVAVAGVATAAATTVTLAPAPANAADVYGAIAYSGNGSWGRSWDYPTRA  60

Query  61   AAEATAVKSCGYSDCKVLTSFTACGAVAANDRAYQGGVGPTLAAAMKDALTKLGGGYIDT  120
            AAEATAVKSCGYSDCKVLTSFTACGAVAANDRAYQGGVGPTLAAAMKDALTKLGGGYIDT
Sbjct  61   AAEATAVKSCGYSDCKVLTSFTACGAVAANDRAYQGGVGPTLAAAMKDALTKLGGGYIDT  120

Query  121  WACN  124
            WACN
Sbjct  121  WACN  124


>gi|254231526|ref|ZP_04924853.1| hypothetical protein TBCG_01250 [Mycobacterium tuberculosis C]
 gi|298524772|ref|ZP_07012181.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308231800|ref|ZP_07413774.2| conserved secreted protein [Mycobacterium tuberculosis SUMu001]
 26 more sequence titles
 Length=121

 Score =  238 bits (606),  Expect = 3e-61, Method: Compositional matrix adjust.
 Identities = 121/121 (100%), Positives = 121/121 (100%), Gaps = 0/121 (0%)

Query  4    MITLRRRFAVAVAGVATAAATTVTLAPAPANAADVYGAIAYSGNGSWGRSWDYPTRAAAE  63
            MITLRRRFAVAVAGVATAAATTVTLAPAPANAADVYGAIAYSGNGSWGRSWDYPTRAAAE
Sbjct  1    MITLRRRFAVAVAGVATAAATTVTLAPAPANAADVYGAIAYSGNGSWGRSWDYPTRAAAE  60

Query  64   ATAVKSCGYSDCKVLTSFTACGAVAANDRAYQGGVGPTLAAAMKDALTKLGGGYIDTWAC  123
            ATAVKSCGYSDCKVLTSFTACGAVAANDRAYQGGVGPTLAAAMKDALTKLGGGYIDTWAC
Sbjct  61   ATAVKSCGYSDCKVLTSFTACGAVAANDRAYQGGVGPTLAAAMKDALTKLGGGYIDTWAC  120

Query  124  N  124
            N
Sbjct  121  N  121


>gi|240173140|ref|ZP_04751798.1| hypothetical protein MkanA1_27756 [Mycobacterium kansasii ATCC 
12478]
Length=132

 Score =  166 bits (419),  Expect = 1e-39, Method: Compositional matrix adjust.
 Identities = 92/132 (70%), Positives = 99/132 (75%), Gaps = 8/132 (6%)

Query  1    MTTMITLRRRFAVAVAGVATAAATTVTLAPAPANAA--------DVYGAIAYSGNGSWGR  52
            MT M+  RRRFAV V  +A   AT   +A   A  A        D YGAIAYS NGSWGR
Sbjct  1    MTMMVPHRRRFAVTVTRLAVVIATIAAIATTAATVAPAPAARATDSYGAIAYSSNGSWGR  60

Query  53   SWDYPTRAAAEATAVKSCGYSDCKVLTSFTACGAVAANDRAYQGGVGPTLAAAMKDALTK  112
            SW YPT+AAAEATAVKSCGYSDCKVLTSFTACGAVAA DR Y+GG GP L+AAMKDAL+K
Sbjct  61   SWAYPTKAAAEATAVKSCGYSDCKVLTSFTACGAVAAKDRDYRGGTGPNLSAAMKDALSK  120

Query  113  LGGGYIDTWACN  124
            L GGYIDTWACN
Sbjct  121  LDGGYIDTWACN  132


>gi|183984124|ref|YP_001852415.1| hypothetical protein MMAR_4153 [Mycobacterium marinum M]
 gi|183177450|gb|ACC42560.1| conserved hypothetical secreted protein [Mycobacterium marinum 
M]
Length=122

 Score =  157 bits (396),  Expect = 7e-37, Method: Compositional matrix adjust.
 Identities = 96/122 (79%), Positives = 108/122 (89%), Gaps = 1/122 (0%)

Query  3    TMITLRRRFAVAVAGVATAAATTVTLAPAPANAADVYGAIAYSGNGSWGRSWDYPTRAAA  62
            T  + RRR AVAVA VATA ATT+TLAP  A+AAD YGAIAYSG+GSWGR+  YPTRAAA
Sbjct  2    TTNSRRRRLAVAVASVATATATTLTLAPV-ADAADQYGAIAYSGDGSWGRASHYPTRAAA  60

Query  63   EATAVKSCGYSDCKVLTSFTACGAVAANDRAYQGGVGPTLAAAMKDALTKLGGGYIDTWA  122
            EATAVK CGYSDCKVLT+FTACGAVAA+ + ++GGVGPTL+AAMKDAL+KLGGGYIDTWA
Sbjct  61   EATAVKLCGYSDCKVLTTFTACGAVAADGKTFEGGVGPTLSAAMKDALSKLGGGYIDTWA  120

Query  123  CN  124
            CN
Sbjct  121  CN  122


>gi|118619215|ref|YP_907547.1| hypothetical protein MUL_4016 [Mycobacterium ulcerans Agy99]
 gi|118571325|gb|ABL06076.1| conserved hypothetical secreted protein [Mycobacterium ulcerans 
Agy99]
Length=111

 Score =  156 bits (395),  Expect = 9e-37, Method: Compositional matrix adjust.
 Identities = 88/112 (79%), Positives = 102/112 (92%), Gaps = 1/112 (0%)

Query  13   VAVAGVATAAATTVTLAPAPANAADVYGAIAYSGNGSWGRSWDYPTRAAAEATAVKSCGY  72
            +A+A VATA ATT+TLAP  A+AAD YGAIAYSG+GSWGR+  YPTRAAAEATAVK CGY
Sbjct  1    MAIASVATATATTLTLAPV-ADAADQYGAIAYSGDGSWGRASHYPTRAAAEATAVKLCGY  59

Query  73   SDCKVLTSFTACGAVAANDRAYQGGVGPTLAAAMKDALTKLGGGYIDTWACN  124
            SDC+VLT+FTACGAVAA+ + ++GGVGPTL+AAMKDAL+KLGGGYIDTWACN
Sbjct  60   SDCRVLTTFTACGAVAADGKTFEGGVGPTLSAAMKDALSKLGGGYIDTWACN  111


>gi|289761421|ref|ZP_06520799.1| conserved secreted protein [Mycobacterium tuberculosis GM 1503]
 gi|289708927|gb|EFD72943.1| conserved secreted protein [Mycobacterium tuberculosis GM 1503]
Length=106

 Score =  144 bits (363),  Expect = 5e-33, Method: Compositional matrix adjust.
 Identities = 74/81 (92%), Positives = 75/81 (93%), Gaps = 0/81 (0%)

Query  1   MTTMITLRRRFAVAVAGVATAAATTVTLAPAPANAADVYGAIAYSGNGSWGRSWDYPTRA  60
           MTTMITLRRRFAVAVAGVATAAATTVTLAPAPANAADVYGAIAYSGNGSWGRSWDYPTRA
Sbjct  1   MTTMITLRRRFAVAVAGVATAAATTVTLAPAPANAADVYGAIAYSGNGSWGRSWDYPTRA  60

Query  61  AAEATAVKSCGYSDCKVLTSF  81
           AAEATAVKSCGYS  +    F
Sbjct  61  AAEATAVKSCGYSRLQGAHQF  81


>gi|183981448|ref|YP_001849739.1| hypothetical protein MMAR_1426 [Mycobacterium marinum M]
 gi|183174774|gb|ACC39884.1| conserved hypothetical secreted protein [Mycobacterium marinum 
M]
Length=136

 Score =  103 bits (256),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 64/134 (48%), Positives = 77/134 (58%), Gaps = 13/134 (9%)

Query  4    MITLRRRFA-VAVAGVATAAATTVTLAPAPANAAD------------VYGAIAYSGNGSW  50
            M  LRRR A + V   A      + L+PA A+  D             YGAIAY  NG  
Sbjct  2    MTNLRRRAALIVVTLAAALGLGLLLLSPAGAHLYDDSITGRIVAPITYYGAIAYGPNGVN  61

Query  51   GRSWDYPTRAAAEATAVKSCGYSDCKVLTSFTACGAVAANDRAYQGGVGPTLAAAMKDAL  110
            GRSW+  TRA AE++A+K CG   CKVL+SF  CGAVA +  A  GGVG T   A  DA 
Sbjct  62   GRSWNNRTRAQAESSALKLCGVEGCKVLSSFVRCGAVAFDGSARHGGVGRTRQMAEDDAR  121

Query  111  TKLGGGYIDTWACN  124
             +LGGG+I+TWACN
Sbjct  122  FRLGGGWIETWACN  135


>gi|183982546|ref|YP_001850837.1| hypothetical protein MMAR_2533 [Mycobacterium marinum M]
 gi|183175872|gb|ACC40982.1| conserved hypothetical secreted protein [Mycobacterium marinum 
M]
Length=142

 Score =  101 bits (251),  Expect = 4e-20, Method: Compositional matrix adjust.
 Identities = 61/142 (43%), Positives = 82/142 (58%), Gaps = 22/142 (15%)

Query  5    ITLRRRFAVAVAGV-ATAAATTVTLAPAPANAADV---------------------YGAI  42
            +T RRR A+A A V ATA    + LA   +  A++                     YGAI
Sbjct  1    MTRRRRIALATATVGATAGLMFIGLALTGSIGANMDRAVMSEMGMLPEGPVPLIVHYGAI  60

Query  43   AYSGNGSWGRSWDYPTRAAAEATAVKSCGYSDCKVLTSFTACGAVAANDRAYQGGVGPTL  102
            AY+ NG++G++  + +R  AE  A+K CG   CKVL +F  CGAVA N+  YQGG G TL
Sbjct  61   AYAPNGAFGKARRFTSRFGAEQAALKQCGLDSCKVLINFNRCGAVAYNNLKYQGGSGWTL  120

Query  103  AAAMKDALTKLGGGYIDTWACN  124
            +AA +DA+ +LGGG+I  WACN
Sbjct  121  SAAQQDAIDRLGGGWIVNWACN  142


>gi|294994825|ref|ZP_06800516.1| hypothetical protein Mtub2_10022 [Mycobacterium tuberculosis 
210]
Length=48

 Score = 97.4 bits (241),  Expect = 6e-19, Method: Compositional matrix adjust.
 Identities = 47/48 (98%), Positives = 48/48 (100%), Gaps = 0/48 (0%)

Query  77   VLTSFTACGAVAANDRAYQGGVGPTLAAAMKDALTKLGGGYIDTWACN  124
            +LTSFTACGAVAANDRAYQGGVGPTLAAAMKDALTKLGGGYIDTWACN
Sbjct  1    MLTSFTACGAVAANDRAYQGGVGPTLAAAMKDALTKLGGGYIDTWACN  48


>gi|240173458|ref|ZP_04752116.1| hypothetical protein MkanA1_29366 [Mycobacterium kansasii ATCC 
12478]
Length=125

 Score = 96.3 bits (238),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 64/124 (52%), Positives = 80/124 (65%), Gaps = 4/124 (3%)

Query  4    MITLRRRFAVAVAGVATAAATTVTLAPAPANAADVYGAIAYSGNGS-WGRSWDYPTRAAA  62
            +   +RR AV+V       A  +TLAPA A A    GAIAYS +G  +GR+   P+RAAA
Sbjct  3    LTAFQRRAAVSVTNFVAVTAMILTLAPA-AEADGYVGAIAYSPSGKVFGRTKHAPSRAAA  61

Query  63   EATAVKSCGYSDCKVLTSFTACGAVAANDRA-YQGGVGPTLAAAMKDALTKLG-GGYIDT  120
            E+ A+ +CGYSDCKVL +FT CGA+A N R  + GG GPTL AA +DA   LG  G+I T
Sbjct  62   ESAALGACGYSDCKVLVTFTDCGAIAENSRGDHAGGYGPTLLAAEQDAAKNLGTSGWIGT  121

Query  121  WACN  124
            W CN
Sbjct  122  WYCN  125


>gi|240173178|ref|ZP_04751836.1| hypothetical protein MkanA1_27946 [Mycobacterium kansasii ATCC 
12478]
Length=145

 Score = 94.0 bits (232),  Expect = 6e-18, Method: Compositional matrix adjust.
 Identities = 56/143 (40%), Positives = 70/143 (49%), Gaps = 22/143 (15%)

Query  4    MITLRRRFAVAVAGV-ATAAATTVTLAPAPANAADV---------------------YGA  41
            M+T RRR  +  A + AT     + L   P   A +                     YGA
Sbjct  1    MMTTRRRITLVAATIGATVGLMVLALPLIPPLDAHIDSAVLSEMGMLPEVPVPPRIHYGA  60

Query  42   IAYSGNGSWGRSWDYPTRAAAEATAVKSCGYSDCKVLTSFTACGAVAANDRAYQGGVGPT  101
            IAY+  G WG+S +Y T A AE  A+  CG   CKVL +F  CGAVA +   Y GG G T
Sbjct  61   IAYAPTGEWGKSRNYLTLAKAEEVALDQCGLDTCKVLINFKRCGAVAYDGSTYHGGSGLT  120

Query  102  LAAAMKDALTKLGGGYIDTWACN  124
            L+ AM DA+ +LG G I  W CN
Sbjct  121  LSDAMADAINRLGAGRIVNWLCN  143


>gi|296165794|ref|ZP_06848300.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295898848|gb|EFG78348.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=141

 Score = 90.5 bits (223),  Expect = 7e-17, Method: Compositional matrix adjust.
 Identities = 55/140 (40%), Positives = 71/140 (51%), Gaps = 19/140 (13%)

Query  4    MITLRRRFAVAVAGVATAAATTV------------TLAP-------APANAADVYGAIAY  44
            MI  R R  +AVA V   A   +            TL P        P      YGA+AY
Sbjct  2    MIKRRYRIGLAVATVGATAGLMIAALPFMPGVGANTLMPETAVMPEGPVPPVIRYGAMAY  61

Query  45   SGNGSWGRSWDYPTRAAAEATAVKSCGYSDCKVLTSFTACGAVAANDRAYQGGVGPTLAA  104
            + +G+WGR+  Y TR  A   A+  CG  DCK++ S+  CGAVA +   Y GG G T + 
Sbjct  62   APSGAWGRTRGYGTRERAIQVALDQCGVKDCKLIVSYQRCGAVAYDGTTYLGGKGVTRSL  121

Query  105  AMKDALTKLGGGYIDTWACN  124
            A +DA+ +LGGG I  WACN
Sbjct  122  AEEDAINRLGGGRIVNWACN  141


>gi|15608950|ref|NP_216329.1| hypothetical protein Rv1813c [Mycobacterium tuberculosis H37Rv]
 gi|15841283|ref|NP_336320.1| hypothetical protein MT1861 [Mycobacterium tuberculosis CDC1551]
 gi|31793002|ref|NP_855495.1| hypothetical protein Mb1843c [Mycobacterium bovis AF2122/97]
 82 more sequence titles
 Length=143

 Score = 89.0 bits (219),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 45/86 (53%), Positives = 56/86 (66%), Gaps = 0/86 (0%)

Query  39   YGAIAYSGNGSWGRSWDYPTRAAAEATAVKSCGYSDCKVLTSFTACGAVAANDRAYQGGV  98
            YGAIAY+ +G+ G++W   T A AE  A++ CG   CKV++ FT CGAVA N   YQGG 
Sbjct  58   YGAIAYAPSGASGKAWHQRTPARAEQVALEKCGDKTCKVVSRFTRCGAVAYNGSKYQGGT  117

Query  99   GPTLAAAMKDALTKLGGGYIDTWACN  124
            G T  AA  DA+ +L GG I  WACN
Sbjct  118  GLTRRAAEDDAVNRLEGGRIVNWACN  143


>gi|183984691|ref|YP_001852982.1| hypothetical protein MMAR_4723 [Mycobacterium marinum M]
 gi|183178017|gb|ACC43127.1| conserved hypothetical secreted protein [Mycobacterium marinum 
M]
Length=155

 Score = 83.2 bits (204),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 40/86 (47%), Positives = 58/86 (68%), Gaps = 0/86 (0%)

Query  39   YGAIAYSGNGSWGRSWDYPTRAAAEATAVKSCGYSDCKVLTSFTACGAVAANDRAYQGGV  98
            YGAIA + NG+ G++W +  RA AE  A+ +CG+  C VL+ FT CGA+A + + + GG+
Sbjct  70   YGAIAVADNGAVGKTWGHRKRAQAEIHALTACGHPSCNVLSVFTRCGAIAHDGQNFHGGL  129

Query  99   GPTLAAAMKDALTKLGGGYIDTWACN  124
            G +  AA  DA  +LGGG++ T ACN
Sbjct  130  GRSHQAAGHDAKARLGGGWVLTSACN  155


>gi|240170411|ref|ZP_04749070.1| hypothetical protein MkanA1_13955 [Mycobacterium kansasii ATCC 
12478]
Length=125

 Score = 82.0 bits (201),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 51/125 (41%), Positives = 70/125 (56%), Gaps = 15/125 (12%)

Query  15   VAGVATAAATTVT-LAPAPANAAD--------------VYGAIAYSGNGSWGRSWDYPTR  59
            ++G+A AAA TVT + PA A+                  YGAIAY  +GS G++W + ++
Sbjct  1    MSGLAVAAAMTVTQIHPAGAHIHRGEMTHVSNMPPFPVYYGAIAYGHDGSNGKAWRHLSK  60

Query  60   AAAEATAVKSCGYSDCKVLTSFTACGAVAANDRAYQGGVGPTLAAAMKDALTKLGGGYID  119
            A A+  A++ CG   C V++ FT CGAVA +   Y GG G   +AA   A+  LGGG I 
Sbjct  61   AQAKHRALELCGIDTCTVVSVFTRCGAVAHDGAKYHGGYGYNRSAAEAHAMANLGGGRIV  120

Query  120  TWACN  124
             WACN
Sbjct  121  DWACN  125


>gi|296140994|ref|YP_003648237.1| hypothetical protein Tpau_3313 [Tsukamurella paurometabola DSM 
20162]
 gi|296029128|gb|ADG79898.1| conserved putative secreted protein [Tsukamurella paurometabola 
DSM 20162]
Length=126

 Score = 82.0 bits (201),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 57/125 (46%), Positives = 71/125 (57%), Gaps = 12/125 (9%)

Query  5    ITLRRRFA---VAVAGVATAAATTVTLAPAPANAAD--VYGAIAYSGNGSWGRSWDYPTR  59
            I+  +R A   +AV G+AT  +T   +AP  +NA     YGAIA   NG+WGR+ DY  R
Sbjct  3    ISRSKRIAAGGLAVIGIATGLST---VAPVASNAEPGVFYGAIAVGSNGAWGRALDYGNR  59

Query  60   AAAEATAVKSCGYSDCKVLTSF-TACGAVAANDRAYQGGVGPTLAAAMKDALTKLGGGYI  118
            A AE  A+  C   +C++L SF   CGAVA    +Y G VG TL  A   AL    GGYI
Sbjct  60   ATAERVALSYCD-GNCRILASFVNGCGAVAKTRTSYWGNVGDTLGVAQNRALRN--GGYI  116

Query  119  DTWAC  123
             TWAC
Sbjct  117  YTWAC  121


>gi|326385281|ref|ZP_08206943.1| hypothetical protein SCNU_20142 [Gordonia neofelifaecis NRRL 
B-59395]
 gi|326195990|gb|EGD53202.1| hypothetical protein SCNU_20142 [Gordonia neofelifaecis NRRL 
B-59395]
Length=134

 Score = 70.1 bits (170),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 55/124 (45%), Positives = 72/124 (59%), Gaps = 5/124 (4%)

Query  5    ITLRRRFAVA---VAGVATAAATTVTLAPAPANAADVYGAIAYS-GNGSWGRSWDYPTRA  60
            I++R+R A A    AGV  A      +APAPA+AA+ YGAIA S   G+ GR+ DYP  +
Sbjct  6    ISMRKRLATAALVTAGVGAALTVPSVVAPAPAHAANYYGAIALSPSTGATGRALDYPDYS  65

Query  61   AAEATAVKSCGYSDCKVLTSF-TACGAVAANDRAYQGGVGPTLAAAMKDALTKLGGGYID  119
            +A   A+  CGYSDC+V+     ACGA+A +   +    G  L  A  +AL   GGGYI 
Sbjct  66   SASNAALSWCGYSDCQVVVQMRNACGAIAKSSSYWGYAWGADLYTAESNALYYSGGGYIH  125

Query  120  TWAC  123
             WAC
Sbjct  126  DWAC  129


>gi|262201902|ref|YP_003273110.1| hypothetical protein Gbro_1963 [Gordonia bronchialis DSM 43247]
 gi|262085249|gb|ACY21217.1| hypothetical protein Gbro_1963 [Gordonia bronchialis DSM 43247]
Length=131

 Score = 69.3 bits (168),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 50/126 (40%), Positives = 72/126 (58%), Gaps = 7/126 (5%)

Query  5    ITLRRRF---AVAVAGVATAAATTVTLAPAPANA-ADVYGAIAYSGNGSW-GRSWDYPTR  59
            ++LR+R    A+ +AGV  A        PAPA+A    YGA+A S +  + GR+ DY + 
Sbjct  1    MSLRKRLSILALTLAGVVGALILPSVSEPAPAHAYGYYYGALALSTSERYVGRALDYDSY  60

Query  60   AAAEATAVKSCGYSDCKVLTSF-TACGAVAANDRAYQGGVGPTLAAAMKDALTKLGGG-Y  117
            A A   A+++CGY+DCKV+T F   CGA+A +   +  G G +L +A  +AL   G G  
Sbjct  61   AEASQAALRACGYADCKVVTRFANGCGAIAESPSYWGFGNGSSLYSAQSEALYYSGSGAE  120

Query  118  IDTWAC  123
            I  WAC
Sbjct  121  IVYWAC  126


>gi|119489310|ref|ZP_01622117.1| hypothetical protein L8106_07641 [Lyngbya sp. PCC 8106]
 gi|119454784|gb|EAW35929.1| hypothetical protein L8106_07641 [Lyngbya sp. PCC 8106]
Length=123

 Score = 66.6 bits (161),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 45/107 (43%), Positives = 61/107 (58%), Gaps = 6/107 (5%)

Query  23   ATTVTLAP-APANAADVYGAIAYSGNGS-WGRSWDYPTRAAAEATAVKSCGYSDCKVLTS  80
            AT + ++P A A  +D YGAIA + +G  WG ++DYP+R  AE  A++ CG S+C+V   
Sbjct  13   ATEILVSPIASAQPSDSYGAIAITPDGQVWGYAYDYPSREQAEQRALEECGESNCQVQVW  72

Query  81   F-TACGAVAANDRAYQG-GVGPTLAAAMKDALTKLGGG--YIDTWAC  123
            F  ACGAVA N+    G     T   A   A+   G G   I+TWAC
Sbjct  73   FKNACGAVAKNEEGKLGWAWADTRKQAEASAVAACGTGTCRIETWAC  119


>gi|209525998|ref|ZP_03274531.1| conserved hypothetical protein [Arthrospira maxima CS-328]
 gi|209493524|gb|EDZ93846.1| conserved hypothetical protein [Arthrospira maxima CS-328]
Length=126

 Score = 53.1 bits (126),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 42/128 (33%), Positives = 57/128 (45%), Gaps = 13/128 (10%)

Query  1    MTTMITLRRRFAVAVAGVATAAATTVTLAPAPANAADVYGAIAYSGNGS--WGRSWDYPT  58
            M   ++L     +A+ G+ T A          A   D YGAIA S      WG S DYPT
Sbjct  1    MIKCLSLTGLILIALEGITTGAIV--------AQNRDHYGAIATSTTNPAIWGYSHDYPT  52

Query  59   RAAAEATAVKSCGYSDCKVLTSF-TACGAVAANDRAYQGGVGPTLAAAMKDALTKLGGG-  116
             A A+  A++ CG +DC++   F   CGA+A N            A A   ++   G G 
Sbjct  53   LAQAQRYALEYCGQADCQIRVWFKNGCGAIATNGSNIGSAWAVNRAEAEARSIVACGQGD  112

Query  117  -YIDTWAC  123
              I+ WAC
Sbjct  113  CKIEVWAC  120


>gi|284051993|ref|ZP_06382203.1| hypothetical protein AplaP_11031 [Arthrospira platensis str. 
Paraca]
 gi|291568823|dbj|BAI91095.1| hypothetical protein [Arthrospira platensis NIES-39]
Length=126

 Score = 52.8 bits (125),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 42/128 (33%), Positives = 56/128 (44%), Gaps = 13/128 (10%)

Query  1    MTTMITLRRRFAVAVAGVATAAATTVTLAPAPANAADVYGAIAYSGNG--SWGRSWDYPT  58
            M   ++L     +A+ G+ T A          A   D YGAIA S      WG S DYPT
Sbjct  1    MIKCLSLTGLILIALEGITTGAIL--------AQNRDNYGAIATSTTNPAQWGYSHDYPT  52

Query  59   RAAAEATAVKSCGYSDCKVLTSF-TACGAVAANDRAYQGGVGPTLAAAMKDALTKLGGG-  116
             A A+  A++ CG +DC++   F   CGA+A N            A A   ++   G G 
Sbjct  53   LAQAQRYALEYCGQADCQIRVWFKNGCGAIATNGSNIGSAWSVNRAEAEARSIVACGQGD  112

Query  117  -YIDTWAC  123
              I  WAC
Sbjct  113  CKIQVWAC  120


>gi|54025836|ref|YP_120078.1| hypothetical protein nfa38660 [Nocardia farcinica IFM 10152]
 gi|54017344|dbj|BAD58714.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=112

 Score = 49.3 bits (116),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 31/86 (37%), Positives = 53/86 (62%), Gaps = 2/86 (2%)

Query  39   YGAIAYSGNGSWGRSWDYPTRAAAEATAVKSCGYSDCKVLTSFT-ACGAVAANDRAYQGG  97
            YGAIA S +G++G + +Y + + AE  AV +CG + C+VL S++  CG +A+++  +   
Sbjct  22   YGAIATSRSGAYGIANNYGSFSDAEQAAVDACG-AGCRVLVSWSNGCGVLASSNTQWSAA  80

Query  98   VGPTLAAAMKDALTKLGGGYIDTWAC  123
               +  AA   AL++L GG++  W C
Sbjct  81   ARSSYTAARSAALSRLSGGWVVDWRC  106


>gi|170079327|ref|YP_001735965.1| serine/threonine-protein kinase [Synechococcus sp. PCC 7002]
 gi|169886996|gb|ACB00710.1| serine/threonine-protein kinase [Synechococcus sp. PCC 7002]
Length=538

 Score = 48.9 bits (115),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 32/78 (42%), Positives = 42/78 (54%), Gaps = 6/78 (7%)

Query  39   YGAIAYS-GNGSWGRSWDYPTRAAAEATAVKSCGY----SDCKVLTSF-TACGAVAANDR  92
            +GAIA+S   G +G   D PT+A AE  AV+ C +     DC+ L  F  ACGA+A    
Sbjct  441  FGAIAFSEATGEYGYVIDVPTQAEAEQAAVEDCEFFAASGDCQALVWFRNACGAIAMGPE  500

Query  93   AYQGGVGPTLAAAMKDAL  110
            AY  G G  + +A   AL
Sbjct  501  AYGSGWGADIESAEAAAL  518


>gi|158336921|ref|YP_001518096.1| hypothetical protein AM1_3792 [Acaryochloris marina MBIC11017]
 gi|158307162|gb|ABW28779.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
Length=133

 Score = 48.5 bits (114),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 37/91 (41%), Positives = 48/91 (53%), Gaps = 7/91 (7%)

Query  4   MITLRRRFAVAVAGVATAAATTVTLAPAPANAADVYGAIAYS-GNGSWGRSWDYPTRAAA  62
           MI  +    + V   +    + V + PA AN  + YGAIAYS   GS G S+DY T  AA
Sbjct  1   MIHSKLAQVLMVTAFSMPTVSLVAVQPASANGNN-YGAIAYSTATGSHGYSYDYSTAQAA  59

Query  63  EATAVKSC----GYSDCKVLTSF-TACGAVA  88
           +  A++ C    G  DCK L  F  ACGA+A
Sbjct  60  QNAALRYCENYSGTGDCKSLVVFQNACGALA  90


>gi|3366597|gb|AAC28395.1| putative open reading frame [Mycobacterium tuberculosis]
Length=124

 Score = 47.0 bits (110),  Expect = 9e-04, Method: Compositional matrix adjust.
 Identities = 21/44 (48%), Positives = 30/44 (69%), Gaps = 0/44 (0%)

Query  39   YGAIAYSGNGSWGRSWDYPTRAAAEATAVKSCGYSDCKVLTSFT  82
            YGAIAY+ +G+ G++W   T A AE  A++ CG   CKV++ FT
Sbjct  71   YGAIAYAPSGASGKAWHQRTPARAEQVALEKCGDKTCKVVSRFT  114


>gi|326381446|ref|ZP_08203140.1| hypothetical protein SCNU_00805 [Gordonia neofelifaecis NRRL 
B-59395]
 gi|326199693|gb|EGD56873.1| hypothetical protein SCNU_00805 [Gordonia neofelifaecis NRRL 
B-59395]
Length=128

 Score = 45.8 bits (107),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 45/123 (37%), Positives = 57/123 (47%), Gaps = 4/123 (3%)

Query  5    ITLRRRFAVAVAGVATAAATTVTLAPAPANAADVYGAIAYSGN-GSWGRSWDYPTRAAAE  63
            + L  + AVA A +AT   TT  + P  A A   YGAIA S   G      +Y   A+A+
Sbjct  1    MKLPLKLAVAGAVLATGMTTTAVVVPEAAAATPYYGAIAISQRTGRAAVVVNYHDGASAQ  60

Query  64   ATAVKSCGYSDCK-VLTSFTACGAVAANDRAYQGG--VGPTLAAAMKDALTKLGGGYIDT  120
              A + CG  DC+ V+  +  CGA A N R  + G    PTL  A   A    GGG    
Sbjct  61   RAAARKCGAGDCRWVVRMYKNCGAAAQNPRTRRWGWAYAPTLNGAKARARNAAGGGRSIV  120

Query  121  WAC  123
            W C
Sbjct  121  WGC  123


>gi|338975179|ref|ZP_08630534.1| hypothetical protein CSIRO_3644 [Bradyrhizobiaceae bacterium 
SG-6C]
 gi|338231778|gb|EGP06913.1| hypothetical protein CSIRO_3644 [Bradyrhizobiaceae bacterium 
SG-6C]
Length=128

 Score = 45.4 bits (106),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 42/131 (33%), Positives = 68/131 (52%), Gaps = 19/131 (14%)

Query  3    TMITLRRRFAVAVAGVATAAATTVTLAPAPANAADVYGAIAYSGNGSWGRSWDYPTRAAA  62
            T+  LR  F VA+    +A AT   +   PA+AA   GA+A    G++G+++DYP   +A
Sbjct  5    TVARLRAFFLVALV---SAFATHFAV---PADAA---GALAIGKCGAYGQAFDYPAEQSA  55

Query  63   EATAVKSCGYSDCKVLTSFTACGAVAANDR----AYQGGVGPTLAAAMKDALTK---LGG  115
               A+K C   +C  +T   AC A++ +      A+   V P +++A+ +A+ K    GG
Sbjct  56   RVAALKQCK-GECSAVTMKRACVALSLDMTKPCGAHGYAVAPRISSALNEAMKKCYAFGG  114

Query  116  G--YIDTWACN  124
                I  WAC+
Sbjct  115  KECVIRAWACD  125


>gi|54024135|ref|YP_118377.1| hypothetical protein nfa21670 [Nocardia farcinica IFM 10152]
 gi|54015643|dbj|BAD57013.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=138

 Score = 45.4 bits (106),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 37/106 (35%), Positives = 53/106 (50%), Gaps = 8/106 (7%)

Query  15   VAGVATAAATTVTLAPAPANAADVYGAIAYS---GNGSWGRSWDYPTRAAAEATAVKSCG  71
            V G+   +A TV  A     A D YG++A     G    G   +YP +  A+  A++ CG
Sbjct  8    VLGLIAGSAITVLGAGTALAAEDYYGSLALGLEPGAIIVGSGVNYPDQEGADVRALQECG  67

Query  72   YSDCKVLTSF-TACGAVAA--NDRAYQGGVGPTLAAAMKDALTKLG  114
              +C ++  F  ACGAVA   N+ A+ GG   T   A + AL +LG
Sbjct  68   VDNCSIVVQFRNACGAVAVRGNEVAWAGGY--TRVEAEQSALAELG  111


>gi|146340297|ref|YP_001205345.1| hypothetical protein BRADO3320 [Bradyrhizobium sp. ORS 278]
 gi|146193103|emb|CAL77114.1| hypothetical protein; putative Peptidase C14, Caspase domain 
[Bradyrhizobium sp. ORS 278]
Length=473

 Score = 45.4 bits (106),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 29/79 (37%), Positives = 43/79 (55%), Gaps = 3/79 (3%)

Query  39   YGAIAYS-GNGSWGRSWDYPTRAAAEATAVKSCGYSDCKVLTSF--TACGAVAANDRAYQ  95
            +G+I Y   N  WG SW++ +R AA   A  +CG + C V  SF  + CGA A +D+++ 
Sbjct  376  WGSIVYGVDNNKWGMSWNHASRRAAVTDARSNCGSAKCPVELSFYGSHCGAFAISDKSWS  435

Query  96   GGVGPTLAAAMKDALTKLG  114
                 T+ AA   AL + G
Sbjct  436  LVQRDTVKAARDAALDECG  454


>gi|27379202|ref|NP_770731.1| hypothetical protein bll4091 [Bradyrhizobium japonicum USDA 110]
 gi|27352353|dbj|BAC49356.1| bll4091 [Bradyrhizobium japonicum USDA 110]
Length=592

 Score = 45.1 bits (105),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 33/98 (34%), Positives = 53/98 (55%), Gaps = 7/98 (7%)

Query  1    MTTMIT-LRRRFAVAVAGVATAAATTVTLAPAPANAADVYGAIAYSGNGS-WGRSWDYPT  58
            +T  IT L++R ++A  G AT     + L     +    +G+I Y  +GS WG SW++ +
Sbjct  459  LTRSITKLQQRISMAPTGEATEG---LLLRMRKMDDLKPWGSIVYGPDGSKWGMSWNHAS  515

Query  59   RAAAEATAVKSCGYSDCKVLTSF--TACGAVAANDRAY  94
            R AA A A  +C  + C +  SF    CGA A +D+++
Sbjct  516  RRAAVADARGNCAGAKCPIELSFYGKGCGAFAISDKSW  553


>gi|296164287|ref|ZP_06846873.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295900349|gb|EFG79769.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=61

 Score = 43.9 bits (102),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 30/86 (35%), Positives = 36/86 (42%), Gaps = 36/86 (41%)

Query  39   YGAIAYSGNGSWGRSWDYPTRAAAEATAVKSCGYSDCKVLTSFTACGAVAANDRAYQGGV  98
            YGAIAY+ +G+WGRSW YP +AAA        GY+                         
Sbjct  12   YGAIAYAPSGAWGRSWRYPNQAAAN-------GYTH------------------------  40

Query  99   GPTLAAAMKDALTKLGGGYIDTWACN  124
                     DAL +LGGG I  W CN
Sbjct  41   -----QIADDALNRLGGGKIVNWVCN  61


>gi|90423150|ref|YP_531520.1| hypothetical protein RPC_1639 [Rhodopseudomonas palustris BisB18]
 gi|90105164|gb|ABD87201.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
Length=128

 Score = 43.5 bits (101),  Expect = 0.012, Method: Compositional matrix adjust.
 Identities = 40/116 (35%), Positives = 59/116 (51%), Gaps = 15/116 (12%)

Query  18   VATAAATTVTLAPAPANAADVYGAIAYSGNGSWGRSWDYPTRAAAEATAVKSCGYSDCKV  77
            VA   A  + + PAPA      GA A    G++G+++DYP  AAA A A K C   DC  
Sbjct  16   VALLIAQLMLVTPAPAA-----GAFAVGKCGAYGQAFDYPVEAAAIAAARKQC-KGDCTT  69

Query  78   LTSFTACGAVAANDR----AYQGGVGPTLAAAMKDALTK---LGGG--YIDTWACN  124
            LT   AC A++ + +    A+   V P +++++ +A  K    GG    I  WAC+
Sbjct  70   LTMRRACAALSIDLKNPCGAHGYAVKPKISSSLNEATRKCYEFGGKECVIRAWACD  125


>gi|209884627|ref|YP_002288484.1| hypothetical protein OCAR_5487 [Oligotropha carboxidovorans OM5]
 gi|337741710|ref|YP_004633438.1| hypothetical protein OCA5_c25020 [Oligotropha carboxidovorans 
OM5]
 gi|209872823|gb|ACI92619.1| conserved hypothetical protein [Oligotropha carboxidovorans OM5]
 gi|336095794|gb|AEI03620.1| hypothetical protein OCA4_c25010 [Oligotropha carboxidovorans 
OM4]
 gi|336099374|gb|AEI07197.1| hypothetical protein OCA5_c25020 [Oligotropha carboxidovorans 
OM5]
Length=126

 Score = 42.7 bits (99),  Expect = 0.020, Method: Compositional matrix adjust.
 Identities = 43/133 (33%), Positives = 66/133 (50%), Gaps = 19/133 (14%)

Query  1    MTTMITLRRRFAVAVAGVATAAATTVTLAPAPANAADVYGAIAYSGNGSWGRSWDYPTRA  60
            M + +TLR       AG+  AA     + PA + AA   GA+A    G++G+++D+  + 
Sbjct  1    MRSTLTLR------FAGLFLAALCFSGVLPASSYAA---GALAVGKCGAYGQAFDHARQE  51

Query  61   AAEATAVKSCGYSDCKVLTSFTACGAVAANDR----AYQGGVGPTLAAAMKDALTKL---  113
            AA A+A K C   DC V+T   AC A   + +    A+   V P +++A+  A  K    
Sbjct  52   AAIASARKQCK-GDCTVVTMRRACAAFVVDMKNPCGAFGYAVEPRISSALNAASKKCYAY  110

Query  114  GGG--YIDTWACN  124
            GG    I  WAC+
Sbjct  111  GGQECVIRAWACD  123


>gi|299131688|ref|ZP_07024883.1| conserved hypothetical protein [Afipia sp. 1NLS2]
 gi|298591825|gb|EFI52025.1| conserved hypothetical protein [Afipia sp. 1NLS2]
Length=126

 Score = 40.4 bits (93),  Expect = 0.098, Method: Compositional matrix adjust.
 Identities = 40/119 (34%), Positives = 61/119 (52%), Gaps = 13/119 (10%)

Query  15   VAGVATAAATTVTLAPAPANAADVYGAIAYSGNGSWGRSWDYPTRAAAEATAVKSCGYSD  74
            +AG+  AA     +  AP+ AA   GA+A    G++G+++ Y  + AA A A K C   D
Sbjct  9    LAGLFFAAILICGVFAAPSYAA---GALAVGKCGAYGQAFGYKHQNAAIAAARKQCK-GD  64

Query  75   CKVLTSFTACGAVAANDR----AYQGGVGPTLAAAMKDALTKL---GGG--YIDTWACN  124
            C V+T   AC A+A + +    A+   V P +++A+  A  K    GG    I  WAC+
Sbjct  65   CTVITMRRACAALAIDMKNPCGAFGYAVEPRISSALNAASKKCYAYGGKECVIRAWACD  123


>gi|158336328|ref|YP_001517502.1| serine/threonine protein kinase [Acaryochloris marina MBIC11017]
 gi|158306569|gb|ABW28186.1| serine/threonine protein kinase [Acaryochloris marina MBIC11017]
Length=509

 Score = 39.7 bits (91),  Expect = 0.14, Method: Composition-based stats.
 Identities = 30/95 (32%), Positives = 47/95 (50%), Gaps = 12/95 (12%)

Query  21   AAATTVTLAPAPANAADVYGAIAYS-GNGSWGRSWDYPTRAAAEATAVKSCGY----SDC  75
            + + T   +P P      + AIAYS   G++G    YP++AAAE  A++ C       DC
Sbjct  390  SPSVTPEASPPPTTQ---FAAIAYSIPTGTYGYGLRYPSQAAAEQRALQECNQRVPAQDC  446

Query  76   KVLTSF-TACGAVAANDRAYQGGVGPTLAAAMKDA  109
            + L  F  ACG++    RA  G  G   +  +++A
Sbjct  447  QALFWFKNACGSLV---RATSGAYGWAWSETIQEA  478


>gi|338974076|ref|ZP_08629438.1| hypothetical protein CSIRO_2527 [Bradyrhizobiaceae bacterium 
SG-6C]
 gi|338232803|gb|EGP07931.1| hypothetical protein CSIRO_2527 [Bradyrhizobiaceae bacterium 
SG-6C]
Length=190

 Score = 39.3 bits (90),  Expect = 0.17, Method: Compositional matrix adjust.
 Identities = 25/66 (38%), Positives = 38/66 (58%), Gaps = 5/66 (7%)

Query  27   TLAPA-PANAADVYGAIAYSGNGSWGRSWDYPTRAAAEATAVKSC---GYSDCKVLTSFT  82
            +L P  PA+ ++ + AI ++  G+WG  W   +R  AEA A+  C   G   CK+ +S T
Sbjct  69   SLKPKTPASPSEQWAAIGFAARGAWGAVWQKTSRDEAEARALTLCVNNGGRGCKI-SSTT  127

Query  83   ACGAVA  88
             CGA+A
Sbjct  128  QCGAMA  133


>gi|296393827|ref|YP_003658711.1| hypothetical protein Srot_1416 [Segniliparus rotundus DSM 44985]
 gi|296180974|gb|ADG97880.1| conserved hypothetical protein [Segniliparus rotundus DSM 44985]
Length=122

 Score = 39.3 bits (90),  Expect = 0.22, Method: Compositional matrix adjust.
 Identities = 30/79 (38%), Positives = 45/79 (57%), Gaps = 3/79 (3%)

Query  26   VTLAPAPANAADVYGAIAYSGNGSWGRSWDYPTRAAAEATAVKSCGYSDCKVLTSFTACG  85
            +T+ P  A A+  +GA+AY G G+ G S +YP  ++A+  A  SCG + C     F  CG
Sbjct  15   LTVCPESA-ASGSWGAVAYDGQGNAGSSRNYPDPSSAKGAAEHSCG-ARCGA-KPFRHCG  71

Query  86   AVAANDRAYQGGVGPTLAA  104
            AVA   ++ +G  G  +AA
Sbjct  72   AVAFTRQSNRGRHGYGVAA  90


>gi|146339862|ref|YP_001204910.1| putative signal peptide [Bradyrhizobium sp. ORS 278]
 gi|146192668|emb|CAL76673.1| conserved hypothetical protein; putative signal peptide [Bradyrhizobium 
sp. ORS 278]
Length=115

 Score = 38.9 bits (89),  Expect = 0.24, Method: Compositional matrix adjust.
 Identities = 38/119 (32%), Positives = 57/119 (48%), Gaps = 17/119 (14%)

Query  15   VAGVATAAATTVTLAPAPANAADVYGAIAYSGNGSWGRSWDYPTRAAAEATAVKSCGYSD  74
            + G A  A T ++    PA+AA   GA A     ++G+++DYP    A+A A+K C   +
Sbjct  2    IVGAARVATTVIS----PAHAA---GAFAIGQCAAYGQAFDYPAEHLAKAAALKQCK-GE  53

Query  75   CKVLTSFTACGAVAA---NDRAYQG-GVGPTLAAAMKDA---LTKLGGG--YIDTWACN  124
            C  +T   AC A A    N     G  V P ++A++ +A     K GG    I  W C+
Sbjct  54   CTAVTMKKACAAFAVDLTNPCGPHGYAVRPKISASLNEATRECYKYGGKECVIRAWVCD  112


>gi|241205439|ref|YP_002976535.1| hypothetical protein Rleg_2733 [Rhizobium leguminosarum bv. trifolii 
WSM1325]
 gi|240859329|gb|ACS56996.1| hypothetical protein Rleg_2733 [Rhizobium leguminosarum bv. trifolii 
WSM1325]
Length=120

 Score = 38.9 bits (89),  Expect = 0.24, Method: Compositional matrix adjust.
 Identities = 39/112 (35%), Positives = 55/112 (50%), Gaps = 9/112 (8%)

Query  22   AATTVTLAPAPANAADVYGAIAYSGNGS-WGRSWDYPTRAAAEATAVKSCGYS--DCKVL  78
            A+  V  + A A  AD YGAIAYS + S  G S+ +  R  AE  A ++C  S  DC++ 
Sbjct  6    ASFAVLTSLAGAALADTYGAIAYSPSTSAIGWSYAHANRGDAETVARRNCDSSANDCRIA  65

Query  79   TSF-TACGAVAANDRAYQG-GVGPTLAAAMKDAL----TKLGGGYIDTWACN  124
              F   CGAVA   R+  G G G     A + A+     + G  ++  W C+
Sbjct  66   IWFRNGCGAVAVGHRSGWGSGWGYDGREAQRQAIRSCRKQTGSCHVIRWQCS  117


>gi|84499865|ref|ZP_00998131.1| 30S ribosomal protein S12 [Oceanicola batsensis HTCC2597]
 gi|84391799|gb|EAQ04067.1| 30S ribosomal protein S12 [Oceanicola batsensis HTCC2597]
Length=129

 Score = 38.9 bits (89),  Expect = 0.25, Method: Compositional matrix adjust.
 Identities = 24/65 (37%), Positives = 37/65 (57%), Gaps = 5/65 (7%)

Query  18  VATAAATTVTLAPAPAN-AADVYGAIAYS-GNGSWGRSWDYPTRAAAEATAVKSC---GY  72
           +  A  + + L  AP + +A+ YGAIAYS  +  +GR+W+Y +R  AE  A+  C   G 
Sbjct  2   IRVALISVLALVAAPVSVSAETYGAIAYSFQSDKYGRAWNYGSRQEAEKAAIGFCKAAGG  61

Query  73  SDCKV  77
             CK+
Sbjct  62  KRCKI  66


>gi|54025524|ref|YP_119766.1| hypothetical protein nfa35540 [Nocardia farcinica IFM 10152]
 gi|54017032|dbj|BAD58402.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=151

 Score = 38.5 bits (88),  Expect = 0.33, Method: Compositional matrix adjust.
 Identities = 33/84 (40%), Positives = 44/84 (53%), Gaps = 13/84 (15%)

Query  39   YGAIAYSGNGSWGR---SWDYPTRAAAEATAVKSCGYSDCK-VLTSFTACGAVAANDRAY  94
            YG +AYS   S GR   +  +P+  AA+A A++ CG  DC  VL    ACGA+A   R  
Sbjct  43   YGTLAYS--PSTGRAVAAVGHPSPVAADAAAIRECGVYDCDLVLRLVDACGAIA---RGA  97

Query  95   QGGVG----PTLAAAMKDALTKLG  114
             G  G    P+ A A + A+  LG
Sbjct  98   DGRFGWAAAPSRAEAEQAAVASLG  121


>gi|148256612|ref|YP_001241197.1| hypothetical protein BBta_5310 [Bradyrhizobium sp. BTAi1]
 gi|146408785|gb|ABQ37291.1| putative exported protein of unknown function [Bradyrhizobium 
sp. BTAi1]
Length=116

 Score = 38.5 bits (88),  Expect = 0.36, Method: Compositional matrix adjust.
 Identities = 35/103 (34%), Positives = 51/103 (50%), Gaps = 13/103 (12%)

Query  31   APANAADVYGAIAYSGNGSWGRSWDYPTRAAAEATAVKSCGYSDCKVLTSFTACGAVAA-  89
            +PA+AA   GA A     ++G+++DYP    A+A A+K C   +C  +T   AC A A  
Sbjct  15   SPAHAA---GAFAIGRCAAFGQAFDYPAEHLAKAAALKQCK-GECTAVTMKKACAAFAVD  70

Query  90   --NDRAYQG-GVGPTLAAAMKDALT---KLGGG--YIDTWACN  124
              N     G  V P ++A++ DA     K GG    I  W C+
Sbjct  71   LTNPCGPHGYAVRPKISASLNDATRECYKYGGKECVIRAWVCD  113


>gi|86750611|ref|YP_487107.1| peptidase C14, caspase catalytic subunit p20 [Rhodopseudomonas 
palustris HaA2]
 gi|86573639|gb|ABD08196.1| Peptidase C14, caspase catalytic subunit p20 [Rhodopseudomonas 
palustris HaA2]
Length=445

 Score = 37.7 bits (86),  Expect = 0.51, Method: Compositional matrix adjust.
 Identities = 22/53 (42%), Positives = 29/53 (55%), Gaps = 3/53 (5%)

Query  39   YGAIAYS-GNGSWGRSWDYPTRAAAEATAVKSCGYSDCKVLTSF--TACGAVA  88
            +G+I Y   N  WG SW++ +R AA + A   C  + CKV  SF    CGA A
Sbjct  348  WGSIVYDPDNEKWGMSWNHASRKAAVSDAGAKCSGAPCKVELSFYGQRCGAFA  400


>gi|269120983|ref|YP_003309160.1| hypothetical protein Sterm_2376 [Sebaldella termitidis ATCC 33386]
 gi|268614861|gb|ACZ09229.1| hypothetical protein Sterm_2376 [Sebaldella termitidis ATCC 33386]
Length=220

 Score = 37.4 bits (85),  Expect = 0.80, Method: Compositional matrix adjust.
 Identities = 25/77 (33%), Positives = 40/77 (52%), Gaps = 3/77 (3%)

Query  39   YGAIAYS-GNGSWGRSWDYPTRAAAEATAVKSCGYSDCKVL--TSFTACGAVAANDRAYQ  95
            +G+++Y+   G WG+SW++ TR  A A + KSCG  +C  L   S  A  A++       
Sbjct  121  WGSLSYNIKTGKWGKSWNHYTRREAVAASEKSCGSPECASLGFQSTYAVMAMSPGKELIV  180

Query  96   GGVGPTLAAAMKDALTK  112
            G     +  A KDA+ +
Sbjct  181  GLSNKNMKDAGKDAIKR  197


>gi|262201100|ref|YP_003272308.1| hypothetical protein Gbro_1107 [Gordonia bronchialis DSM 43247]
 gi|262084447|gb|ACY20415.1| conserved hypothetical protein [Gordonia bronchialis DSM 43247]
Length=126

 Score = 37.0 bits (84),  Expect = 0.90, Method: Compositional matrix adjust.
 Identities = 30/90 (34%), Positives = 44/90 (49%), Gaps = 5/90 (5%)

Query  38   VYGAIAYSGNGSWGRSWDYPTRAAAEATAVKSCGYSDCKVLTSFTACGAVA-ANDRAYQG  96
             +G IA+  +G    + DYP++ +A   A   CG S C     + +CGA+A  NDR +  
Sbjct  33   NWGVIAFDNSGRTSYAVDYPSQRSAINAAKARCG-SHCGYFAFYNSCGAIAYTNDRRHWH  91

Query  97   GVG--PTLAAAMKDALTKLG-GGYIDTWAC  123
                  T  AA   A ++L   GY+  WAC
Sbjct  92   WASGYRTPQAAQNAARSELPYRGYVARWAC  121


>gi|119868707|ref|YP_938659.1| hypothetical protein Mkms_2674 [Mycobacterium sp. KMS]
 gi|119694796|gb|ABL91869.1| hypothetical protein Mkms_2674 [Mycobacterium sp. KMS]
Length=125

 Score = 36.6 bits (83),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 38/110 (35%), Positives = 51/110 (47%), Gaps = 6/110 (5%)

Query  4    MITLRRRFAVAVAGVATAAATTVTLAPAPANAADVYGAIAYSGN-GSWGRSWDYPTRAAA  62
            M+ LRR    ++           T   AP   A  +GAIA S + G  G +  Y +   A
Sbjct  1    MVALRRLLVTSLVAGCLGGGAAFT---APTAGALGWGAIAVSPDTGKVGYTKGYNSAIEA  57

Query  63   EATAVKSCGYSDCKVLTSFT-ACGAVA-ANDRAYQGGVGPTLAAAMKDAL  110
            E  A+  C   DC+ + +FT  CGAVA A D  +  GVG   A A + AL
Sbjct  58   ERAAIGLCSARDCRAVVNFTKGCGAVAQAPDAWWAPGVGRDSAGAQRMAL  107


>gi|126435238|ref|YP_001070929.1| hypothetical protein Mjls_2658 [Mycobacterium sp. JLS]
 gi|126235038|gb|ABN98438.1| hypothetical protein Mjls_2658 [Mycobacterium sp. JLS]
Length=133

 Score = 36.6 bits (83),  Expect = 1.4, Method: Compositional matrix adjust.
 Identities = 38/110 (35%), Positives = 51/110 (47%), Gaps = 6/110 (5%)

Query  4    MITLRRRFAVAVAGVATAAATTVTLAPAPANAADVYGAIAYSGN-GSWGRSWDYPTRAAA  62
            M+ LRR    ++           T   AP   A  +GAIA S + G  G +  Y +   A
Sbjct  9    MVALRRLLVTSLVAGCLGGGAAFT---APTAGALGWGAIAVSPDTGKVGYTKGYNSAIEA  65

Query  63   EATAVKSCGYSDCKVLTSFT-ACGAVA-ANDRAYQGGVGPTLAAAMKDAL  110
            E  A+  C   DC+ + +FT  CGAVA A D  +  GVG   A A + AL
Sbjct  66   ERAAIGLCSARDCRAVVNFTKGCGAVAQAPDAWWAPGVGRDSAGAQRMAL  115


>gi|339502098|ref|YP_004689518.1| hypothetical protein RLO149_c005270 [Roseobacter litoralis Och 
149]
 gi|338756091|gb|AEI92555.1| hypothetical protein RLO149_c005270 [Roseobacter litoralis Och 
149]
Length=209

 Score = 36.2 bits (82),  Expect = 1.7, Method: Compositional matrix adjust.
 Identities = 21/45 (47%), Positives = 24/45 (54%), Gaps = 0/45 (0%)

Query  39   YGAIAYSGNGSWGRSWDYPTRAAAEATAVKSCGYSDCKVLTSFTA  83
            YGA A S  GSWG SW +  R+ A ATA+  C  S   VL    A
Sbjct  142  YGAFAISRVGSWGYSWSFDERSEALATALLQCEASTKGVLADLNA  186


>gi|91976267|ref|YP_568926.1| hypothetical protein RPD_1789 [Rhodopseudomonas palustris BisB5]
 gi|91682723|gb|ABE39025.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
Length=125

 Score = 35.8 bits (81),  Expect = 2.4, Method: Compositional matrix adjust.
 Identities = 34/99 (35%), Positives = 51/99 (52%), Gaps = 10/99 (10%)

Query  35   AADVYGAIAYSGNGSWGRSWDYPTRAAAEATAVKSCGYSDCKVLTSFTACGAVAANDRAY  94
            +A+  GA A    G++G+++DYP  AAA A A K C   DC  +T   AC A+A +    
Sbjct  25   SAEAAGAFAVGKCGAYGKAFDYPAEAAAIAAARKQC-RGDCTTITMRRACAALAIDLLNP  83

Query  95   QG----GVGPTLAAAMKDALTKL---GGG--YIDTWACN  124
             G     V P +++++ +A  K    GG    I  WAC+
Sbjct  84   CGPHGYAVEPKISSSLNEATRKCYEYGGKECVIRAWACD  122



Lambda     K      H
   0.318    0.127    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 130872486112


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40