BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1274
Length=185
Score E
Sequences producing significant alignments: (Bits) Value
gi|15840721|ref|NP_335758.1| hypothetical protein MT1312 [Mycoba... 379 1e-103
gi|15608414|ref|NP_215790.1| lipoprotein LprB [Mycobacterium tub... 377 5e-103
gi|31792466|ref|NP_854959.1| putative lipoprotein LPRB [Mycobact... 374 3e-102
gi|323720230|gb|EGB29329.1| lipoprotein lprB [Mycobacterium tube... 363 6e-99
gi|339294256|gb|AEJ46367.1| lipoprotein LprB [Mycobacterium tube... 355 1e-96
gi|240173135|ref|ZP_04751793.1| lipoprotein LprB [Mycobacterium ... 338 3e-91
gi|342858081|ref|ZP_08714737.1| LprB [Mycobacterium colombiense ... 323 9e-87
gi|254820143|ref|ZP_05225144.1| LprB [Mycobacterium intracellula... 322 1e-86
gi|41408596|ref|NP_961432.1| LprB [Mycobacterium avium subsp. pa... 320 4e-86
gi|118619209|ref|YP_907541.1| lipoprotein LprB [Mycobacterium ul... 315 1e-84
gi|15827549|ref|NP_301812.1| lipoprotein [Mycobacterium leprae T... 307 6e-82
gi|118464412|ref|YP_880665.1| LprB protein [Mycobacterium avium ... 305 2e-81
gi|333989878|ref|YP_004522492.1| hypothetical protein JDM601_123... 280 8e-74
gi|296170178|ref|ZP_06851773.1| LprB protein [Mycobacterium para... 260 8e-68
gi|118469410|ref|YP_889258.1| LprB protein [Mycobacterium smegma... 248 3e-64
gi|108800903|ref|YP_641100.1| putative lipoprotein LprB [Mycobac... 241 3e-62
gi|120405392|ref|YP_955221.1| putative lipoprotein LprB [Mycobac... 236 1e-60
gi|145222840|ref|YP_001133518.1| putative lipoprotein LprB [Myco... 229 2e-58
gi|315443307|ref|YP_004076186.1| hypothetical protein Mspyr1_168... 229 2e-58
gi|169628507|ref|YP_001702156.1| putative lipoprotein LprB [Myco... 184 7e-45
gi|262203744|ref|YP_003274952.1| RNA-binding S4 domain-containin... 145 2e-33
gi|226305248|ref|YP_002765206.1| hypothetical protein RER_17590 ... 126 1e-27
gi|289569284|ref|ZP_06449511.1| predicted protein [Mycobacterium... 126 1e-27
gi|229490542|ref|ZP_04384380.1| LprB protein [Rhodococcus erythr... 126 2e-27
gi|325675381|ref|ZP_08155065.1| lipoprotein LprB [Rhodococcus eq... 123 1e-26
gi|312140982|ref|YP_004008318.1| lipoprotein [Rhodococcus equi 1... 121 4e-26
gi|343926059|ref|ZP_08765571.1| putative RNA-binding protein [Go... 121 5e-26
gi|226361023|ref|YP_002778801.1| hypothetical protein ROP_16090 ... 119 2e-25
gi|111018923|ref|YP_701895.1| lipoprotein LprB [Rhodococcus jost... 119 2e-25
gi|317509028|ref|ZP_07966659.1| hypothetical protein HMPREF9336_... 115 3e-24
gi|262203743|ref|YP_003274951.1| hypothetical protein Gbro_3882 ... 105 4e-21
gi|326384267|ref|ZP_08205949.1| RNA-binding S4 domain-containing... 95.5 3e-18
gi|296395083|ref|YP_003659967.1| hypothetical protein Srot_2702 ... 95.1 4e-18
gi|111018591|ref|YP_701563.1| lipoprotein [Rhodococcus jostii RH... 95.1 4e-18
gi|54027054|ref|YP_121296.1| hypothetical protein nfa50800 [Noca... 93.6 1e-17
gi|333918121|ref|YP_004491702.1| hypothetical protein AS9A_0445 ... 93.2 2e-17
gi|226360710|ref|YP_002778488.1| hypothetical protein ROP_12960 ... 91.7 4e-17
gi|118468258|ref|YP_885782.1| LprB protein [Mycobacterium smegma... 58.2 6e-07
gi|120402288|ref|YP_952117.1| hypothetical protein Mvan_1277 [My... 55.8 3e-06
gi|169628509|ref|YP_001702158.1| hypothetical protein MAB_1418 [... 55.8 3e-06
gi|108797955|ref|YP_638152.1| hypothetical protein Mmcs_0982 [My... 54.7 6e-06
gi|169630935|ref|YP_001704584.1| putative lipoprotein LprB [Myco... 53.5 1e-05
gi|145225656|ref|YP_001136334.1| hypothetical protein Mflv_5080 ... 52.8 2e-05
gi|226360711|ref|YP_002778489.1| hypothetical protein ROP_12970 ... 43.1 0.017
gi|119867051|ref|YP_937003.1| hypothetical protein Mkms_0999 [My... 42.4 0.032
gi|108797954|ref|YP_638151.1| hypothetical protein Mmcs_0981 [My... 42.4 0.034
gi|118468055|ref|YP_885781.1| lipoprotein [Mycobacterium smegmat... 40.0 0.17
gi|228999604|ref|ZP_04159181.1| LPXTG-site transpeptidase [Bacil... 39.3 0.30
gi|228993567|ref|ZP_04153475.1| LPXTG-site transpeptidase [Bacil... 38.5 0.43
gi|120402287|ref|YP_952116.1| hypothetical protein Mvan_1276 [My... 37.4 0.99
>gi|15840721|ref|NP_335758.1| hypothetical protein MT1312 [Mycobacterium tuberculosis CDC1551]
gi|254231531|ref|ZP_04924858.1| lipoprotein lprB [Mycobacterium tuberculosis C]
gi|254364171|ref|ZP_04980217.1| lipoprotein lprB [Mycobacterium tuberculosis str. Haarlem]
23 more sequence titles
Length=190
Score = 379 bits (972), Expect = 1e-103, Method: Compositional matrix adjust.
Identities = 185/185 (100%), Positives = 185/185 (100%), Gaps = 0/185 (0%)
Query 1 VRRKVRRLTLAVSALVALFPAVAGCSDSGDNKPGATIPSTPANAEGRHGPFFPQCGGVSD 60
VRRKVRRLTLAVSALVALFPAVAGCSDSGDNKPGATIPSTPANAEGRHGPFFPQCGGVSD
Sbjct 6 VRRKVRRLTLAVSALVALFPAVAGCSDSGDNKPGATIPSTPANAEGRHGPFFPQCGGVSD 65
Query 61 QTVTELTRVTGLVNTAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVE 120
QTVTELTRVTGLVNTAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVE
Sbjct 66 QTVTELTRVTGLVNTAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVE 125
Query 121 DINIDGHSGFIAIGNEPSLGDSLCEVGIQFSDDFIEWSVSFSQKPFPLPCDIAKELTRQS 180
DINIDGHSGFIAIGNEPSLGDSLCEVGIQFSDDFIEWSVSFSQKPFPLPCDIAKELTRQS
Sbjct 126 DINIDGHSGFIAIGNEPSLGDSLCEVGIQFSDDFIEWSVSFSQKPFPLPCDIAKELTRQS 185
Query 181 IANSK 185
IANSK
Sbjct 186 IANSK 190
>gi|15608414|ref|NP_215790.1| lipoprotein LprB [Mycobacterium tuberculosis H37Rv]
gi|148661061|ref|YP_001282584.1| putative lipoprotein LprB [Mycobacterium tuberculosis H37Ra]
gi|148822491|ref|YP_001287245.1| lipoprotein lprB [Mycobacterium tuberculosis F11]
29 more sequence titles
Length=185
Score = 377 bits (968), Expect = 5e-103, Method: Compositional matrix adjust.
Identities = 184/185 (99%), Positives = 185/185 (100%), Gaps = 0/185 (0%)
Query 1 VRRKVRRLTLAVSALVALFPAVAGCSDSGDNKPGATIPSTPANAEGRHGPFFPQCGGVSD 60
+RRKVRRLTLAVSALVALFPAVAGCSDSGDNKPGATIPSTPANAEGRHGPFFPQCGGVSD
Sbjct 1 MRRKVRRLTLAVSALVALFPAVAGCSDSGDNKPGATIPSTPANAEGRHGPFFPQCGGVSD 60
Query 61 QTVTELTRVTGLVNTAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVE 120
QTVTELTRVTGLVNTAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVE
Sbjct 61 QTVTELTRVTGLVNTAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVE 120
Query 121 DINIDGHSGFIAIGNEPSLGDSLCEVGIQFSDDFIEWSVSFSQKPFPLPCDIAKELTRQS 180
DINIDGHSGFIAIGNEPSLGDSLCEVGIQFSDDFIEWSVSFSQKPFPLPCDIAKELTRQS
Sbjct 121 DINIDGHSGFIAIGNEPSLGDSLCEVGIQFSDDFIEWSVSFSQKPFPLPCDIAKELTRQS 180
Query 181 IANSK 185
IANSK
Sbjct 181 IANSK 185
>gi|31792466|ref|NP_854959.1| putative lipoprotein LPRB [Mycobacterium bovis AF2122/97]
gi|121637202|ref|YP_977425.1| putative lipoprotein lprB [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224989677|ref|YP_002644364.1| putative lipoprotein [Mycobacterium bovis BCG str. Tokyo 172]
19 more sequence titles
Length=185
Score = 374 bits (960), Expect = 3e-102, Method: Compositional matrix adjust.
Identities = 183/185 (99%), Positives = 184/185 (99%), Gaps = 0/185 (0%)
Query 1 VRRKVRRLTLAVSALVALFPAVAGCSDSGDNKPGATIPSTPANAEGRHGPFFPQCGGVSD 60
+RRKVRRLTLAVSALVALFPAVAGCSDSGDNKPGATIPSTPANAEGRHGPFFPQCGGVSD
Sbjct 1 MRRKVRRLTLAVSALVALFPAVAGCSDSGDNKPGATIPSTPANAEGRHGPFFPQCGGVSD 60
Query 61 QTVTELTRVTGLVNTAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVE 120
QTVTELTRVTGLVNTAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVE
Sbjct 61 QTVTELTRVTGLVNTAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVE 120
Query 121 DINIDGHSGFIAIGNEPSLGDSLCEVGIQFSDDFIEWSVSFSQKPFPLPCDIAKELTRQS 180
DINIDGHSGFIAIGNEPSLGDSLCEVGIQFSDDFIEWSVSFSQKPFP PCDIAKELTRQS
Sbjct 121 DINIDGHSGFIAIGNEPSLGDSLCEVGIQFSDDFIEWSVSFSQKPFPPPCDIAKELTRQS 180
Query 181 IANSK 185
IANSK
Sbjct 181 IANSK 185
>gi|323720230|gb|EGB29329.1| lipoprotein lprB [Mycobacterium tuberculosis CDC1551A]
Length=178
Score = 363 bits (932), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 177/178 (99%), Positives = 178/178 (100%), Gaps = 0/178 (0%)
Query 8 LTLAVSALVALFPAVAGCSDSGDNKPGATIPSTPANAEGRHGPFFPQCGGVSDQTVTELT 67
+TLAVSALVALFPAVAGCSDSGDNKPGATIPSTPANAEGRHGPFFPQCGGVSDQTVTELT
Sbjct 1 MTLAVSALVALFPAVAGCSDSGDNKPGATIPSTPANAEGRHGPFFPQCGGVSDQTVTELT 60
Query 68 RVTGLVNTAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVEDINIDGH 127
RVTGLVNTAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVEDINIDGH
Sbjct 61 RVTGLVNTAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVEDINIDGH 120
Query 128 SGFIAIGNEPSLGDSLCEVGIQFSDDFIEWSVSFSQKPFPLPCDIAKELTRQSIANSK 185
SGFIAIGNEPSLGDSLCEVGIQFSDDFIEWSVSFSQKPFPLPCDIAKELTRQSIANSK
Sbjct 121 SGFIAIGNEPSLGDSLCEVGIQFSDDFIEWSVSFSQKPFPLPCDIAKELTRQSIANSK 178
>gi|339294256|gb|AEJ46367.1| lipoprotein LprB [Mycobacterium tuberculosis CCDC5079]
gi|339297896|gb|AEJ50006.1| lipoprotein LprB [Mycobacterium tuberculosis CCDC5180]
Length=174
Score = 355 bits (912), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 173/174 (99%), Positives = 174/174 (100%), Gaps = 0/174 (0%)
Query 12 VSALVALFPAVAGCSDSGDNKPGATIPSTPANAEGRHGPFFPQCGGVSDQTVTELTRVTG 71
+SALVALFPAVAGCSDSGDNKPGATIPSTPANAEGRHGPFFPQCGGVSDQTVTELTRVTG
Sbjct 1 MSALVALFPAVAGCSDSGDNKPGATIPSTPANAEGRHGPFFPQCGGVSDQTVTELTRVTG 60
Query 72 LVNTAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVEDINIDGHSGFI 131
LVNTAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVEDINIDGHSGFI
Sbjct 61 LVNTAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVEDINIDGHSGFI 120
Query 132 AIGNEPSLGDSLCEVGIQFSDDFIEWSVSFSQKPFPLPCDIAKELTRQSIANSK 185
AIGNEPSLGDSLCEVGIQFSDDFIEWSVSFSQKPFPLPCDIAKELTRQSIANSK
Sbjct 121 AIGNEPSLGDSLCEVGIQFSDDFIEWSVSFSQKPFPLPCDIAKELTRQSIANSK 174
>gi|240173135|ref|ZP_04751793.1| lipoprotein LprB [Mycobacterium kansasii ATCC 12478]
Length=185
Score = 338 bits (866), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 161/185 (88%), Positives = 172/185 (93%), Gaps = 0/185 (0%)
Query 1 VRRKVRRLTLAVSALVALFPAVAGCSDSGDNKPGATIPSTPANAEGRHGPFFPQCGGVSD 60
+RR V L LA SALVAL PA+AGCS+SG N+PGATI STP NA G+HGPFFPQCGGVSD
Sbjct 1 MRRNVTTLVLAASALVALTPAIAGCSNSGANQPGATISSTPGNAAGKHGPFFPQCGGVSD 60
Query 61 QTVTELTRVTGLVNTAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVE 120
QTVTELTRV GL+NTAKNSVGCQWLAGGGI+GPHFSFSWYRGSPIGRERKTEELSRASVE
Sbjct 61 QTVTELTRVGGLINTAKNSVGCQWLAGGGIMGPHFSFSWYRGSPIGRERKTEELSRASVE 120
Query 121 DINIDGHSGFIAIGNEPSLGDSLCEVGIQFSDDFIEWSVSFSQKPFPLPCDIAKELTRQS 180
DINI+GHSGFIAIGNEPSLGDSLCEVGIQF DDFIEWSVSF+QKPFP PCD+AKELTRQS
Sbjct 121 DININGHSGFIAIGNEPSLGDSLCEVGIQFQDDFIEWSVSFNQKPFPPPCDVAKELTRQS 180
Query 181 IANSK 185
IAN+K
Sbjct 181 IANAK 185
>gi|342858081|ref|ZP_08714737.1| LprB [Mycobacterium colombiense CECT 3035]
gi|342135414|gb|EGT88580.1| LprB [Mycobacterium colombiense CECT 3035]
Length=185
Score = 323 bits (827), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 152/185 (83%), Positives = 162/185 (88%), Gaps = 0/185 (0%)
Query 1 VRRKVRRLTLAVSALVALFPAVAGCSDSGDNKPGATIPSTPANAEGRHGPFFPQCGGVSD 60
+RR R L L SAL L PA AGCSDSG NKPGAT STP N +G HG FPQCGG+SD
Sbjct 1 MRRDTRALALVASALTILIPAAAGCSDSGGNKPGATASSTPQNGQGNHGAMFPQCGGISD 60
Query 61 QTVTELTRVTGLVNTAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVE 120
QTV ELT+VTGL+NTA+NSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASV+
Sbjct 61 QTVAELTKVTGLINTARNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVD 120
Query 121 DINIDGHSGFIAIGNEPSLGDSLCEVGIQFSDDFIEWSVSFSQKPFPLPCDIAKELTRQS 180
DINIDGH GFIA+GNEP+LGDSLCEVGIQF DDFIEWS+SFSQKPFP PCDIAKEL RQS
Sbjct 121 DINIDGHGGFIAVGNEPNLGDSLCEVGIQFQDDFIEWSISFSQKPFPPPCDIAKELARQS 180
Query 181 IANSK 185
IANSK
Sbjct 181 IANSK 185
>gi|254820143|ref|ZP_05225144.1| LprB [Mycobacterium intracellulare ATCC 13950]
Length=185
Score = 322 bits (826), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 152/185 (83%), Positives = 162/185 (88%), Gaps = 0/185 (0%)
Query 1 VRRKVRRLTLAVSALVALFPAVAGCSDSGDNKPGATIPSTPANAEGRHGPFFPQCGGVSD 60
+RR R L L SAL L PAVA CSDSG NKPGAT STP +G HGP FPQCGG+SD
Sbjct 1 MRRSARALALVASALTILIPAVAACSDSGGNKPGATASSTPQKGQGNHGPMFPQCGGISD 60
Query 61 QTVTELTRVTGLVNTAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVE 120
QTV ELTRVTGL+NTA+NSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASV+
Sbjct 61 QTVAELTRVTGLINTARNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVD 120
Query 121 DINIDGHSGFIAIGNEPSLGDSLCEVGIQFSDDFIEWSVSFSQKPFPLPCDIAKELTRQS 180
DINI+GH GFIA+GNEP+LGDSLCEVGIQF DDFIEWS+SFSQKPFP PCDIAKEL RQS
Sbjct 121 DININGHGGFIAVGNEPNLGDSLCEVGIQFQDDFIEWSISFSQKPFPPPCDIAKELARQS 180
Query 181 IANSK 185
IANSK
Sbjct 181 IANSK 185
>gi|41408596|ref|NP_961432.1| LprB [Mycobacterium avium subsp. paratuberculosis K-10]
gi|254774300|ref|ZP_05215816.1| LprB [Mycobacterium avium subsp. avium ATCC 25291]
gi|41396954|gb|AAS04815.1| LprB [Mycobacterium avium subsp. paratuberculosis K-10]
gi|336458549|gb|EGO37517.1| Protein of unknown function (DUF3558) [Mycobacterium avium subsp.
paratuberculosis S397]
Length=185
Score = 320 bits (821), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 150/185 (82%), Positives = 163/185 (89%), Gaps = 0/185 (0%)
Query 1 VRRKVRRLTLAVSALVALFPAVAGCSDSGDNKPGATIPSTPANAEGRHGPFFPQCGGVSD 60
+RR R L L SAL L PA A CSDSG +KPGAT S P N +G HGP FPQCGG+SD
Sbjct 1 MRRNTRALALVASALTILIPATAACSDSGGSKPGATTSSAPQNGQGNHGPMFPQCGGISD 60
Query 61 QTVTELTRVTGLVNTAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVE 120
QTV ELT+V+GL+NTA+NSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASV+
Sbjct 61 QTVAELTKVSGLINTARNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVD 120
Query 121 DINIDGHSGFIAIGNEPSLGDSLCEVGIQFSDDFIEWSVSFSQKPFPLPCDIAKELTRQS 180
DINI+GHSGFIA+GNEP+LGDSLCEVGIQFSDDFIEWS+SFSQKPFP PCDIAKEL RQS
Sbjct 121 DININGHSGFIAVGNEPNLGDSLCEVGIQFSDDFIEWSISFSQKPFPPPCDIAKELARQS 180
Query 181 IANSK 185
IANSK
Sbjct 181 IANSK 185
>gi|118619209|ref|YP_907541.1| lipoprotein LprB [Mycobacterium ulcerans Agy99]
gi|183984117|ref|YP_001852408.1| lipoprotein LprB [Mycobacterium marinum M]
gi|118571319|gb|ABL06070.1| lipoprotein LprB [Mycobacterium ulcerans Agy99]
gi|183177443|gb|ACC42553.1| lipoprotein LprB [Mycobacterium marinum M]
Length=185
Score = 315 bits (808), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 156/185 (85%), Positives = 173/185 (94%), Gaps = 0/185 (0%)
Query 1 VRRKVRRLTLAVSALVALFPAVAGCSDSGDNKPGATIPSTPANAEGRHGPFFPQCGGVSD 60
+RR + L LA +AL+AL PAVAGCS+SGDN PGAT STP ++EGRHGPFFPQCGGVSD
Sbjct 1 MRRNLTTLALAAAALMALSPAVAGCSNSGDNNPGATASSTPGSSEGRHGPFFPQCGGVSD 60
Query 61 QTVTELTRVTGLVNTAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVE 120
QTVT+LTR++GL+NTA+NSVGCQWLAGGGI+GPHFSFSWYRGSPIGRERKTEELSRASVE
Sbjct 61 QTVTQLTRISGLINTAQNSVGCQWLAGGGIMGPHFSFSWYRGSPIGRERKTEELSRASVE 120
Query 121 DINIDGHSGFIAIGNEPSLGDSLCEVGIQFSDDFIEWSVSFSQKPFPLPCDIAKELTRQS 180
DINIDGHSGFIAIGNEP+LGDSLCEVGIQF DDFIEWSVSF+QKPFP PCD+A+ELTRQS
Sbjct 121 DINIDGHSGFIAIGNEPTLGDSLCEVGIQFQDDFIEWSVSFNQKPFPPPCDVARELTRQS 180
Query 181 IANSK 185
IANSK
Sbjct 181 IANSK 185
>gi|15827549|ref|NP_301812.1| lipoprotein [Mycobacterium leprae TN]
gi|221230026|ref|YP_002503442.1| putative lipoprotein [Mycobacterium leprae Br4923]
gi|18202771|sp|Q9CC87.1|LPRB_MYCLE RecName: Full=Putative lipoprotein lprB; Flags: Precursor
gi|13093099|emb|CAC31496.1| possible lipoprotein [Mycobacterium leprae]
gi|219933133|emb|CAR71210.1| possible lipoprotein [Mycobacterium leprae Br4923]
Length=188
Score = 307 bits (786), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 147/188 (79%), Positives = 162/188 (87%), Gaps = 3/188 (1%)
Query 1 VRRKVRRLTLAVSALVALF---PAVAGCSDSGDNKPGATIPSTPANAEGRHGPFFPQCGG 57
+R VR L LA L+ L P VAGCS++G NK TI STP N EG HGP FP+CGG
Sbjct 1 MRCDVRALALAARGLIELMIVIPMVAGCSNAGSNKSVGTISSTPGNTEGHHGPMFPRCGG 60
Query 58 VSDQTVTELTRVTGLVNTAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRA 117
+SDQT+++LT+VTGL NTA+NSVGCQWLAGGGI+GPHFSFSWYRGSPIGRERKTEELSRA
Sbjct 61 ISDQTMSQLTKVTGLTNTARNSVGCQWLAGGGIVGPHFSFSWYRGSPIGRERKTEELSRA 120
Query 118 SVEDINIDGHSGFIAIGNEPSLGDSLCEVGIQFSDDFIEWSVSFSQKPFPLPCDIAKELT 177
SV+DINI+GHSGFIA+GNEPSLGDSLCEVGIQF DDFIEWSVSFSQKPFP PC IAKELT
Sbjct 121 SVDDININGHSGFIAVGNEPSLGDSLCEVGIQFQDDFIEWSVSFSQKPFPSPCGIAKELT 180
Query 178 RQSIANSK 185
RQSIANSK
Sbjct 181 RQSIANSK 188
>gi|118464412|ref|YP_880665.1| LprB protein [Mycobacterium avium 104]
gi|118165699|gb|ABK66596.1| LprB protein [Mycobacterium avium 104]
Length=171
Score = 305 bits (782), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 142/171 (84%), Positives = 155/171 (91%), Gaps = 0/171 (0%)
Query 15 LVALFPAVAGCSDSGDNKPGATIPSTPANAEGRHGPFFPQCGGVSDQTVTELTRVTGLVN 74
+ L PA A CSDSG +KPGAT S P N +G HGP FPQCGG+SDQTV ELT+V+GL+N
Sbjct 1 MTILIPATAACSDSGGSKPGATTSSAPQNGQGNHGPMFPQCGGISDQTVAELTKVSGLIN 60
Query 75 TAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVEDINIDGHSGFIAIG 134
TA+NSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASV+DINI+GHSGFIA+G
Sbjct 61 TARNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVDDININGHSGFIAVG 120
Query 135 NEPSLGDSLCEVGIQFSDDFIEWSVSFSQKPFPLPCDIAKELTRQSIANSK 185
NEP+LGDSLCEVGIQFSDDFIEWS+SFSQKPFP PCDIAKEL RQSIANSK
Sbjct 121 NEPNLGDSLCEVGIQFSDDFIEWSISFSQKPFPPPCDIAKELARQSIANSK 171
>gi|333989878|ref|YP_004522492.1| hypothetical protein JDM601_1238 [Mycobacterium sp. JDM601]
gi|333485846|gb|AEF35238.1| lipoprotein LprB [Mycobacterium sp. JDM601]
Length=185
Score = 280 bits (715), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 132/185 (72%), Positives = 153/185 (83%), Gaps = 0/185 (0%)
Query 1 VRRKVRRLTLAVSALVALFPAVAGCSDSGDNKPGATIPSTPANAEGRHGPFFPQCGGVSD 60
+ R +LT+ A+ A+ P VAGCSDSG + + S + + HGP FPQCGGVSD
Sbjct 1 MHRVRLKLTVPALAVAAVIPMVAGCSDSGSTEASSGESSASNSDQSTHGPLFPQCGGVSD 60
Query 61 QTVTELTRVTGLVNTAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVE 120
+TVT LTRV+GLVNTA+NS GCQWLA GGI+GPHFSFSWYRGSPIGRERKTEE+SR SVE
Sbjct 61 ETVTNLTRVSGLVNTAQNSAGCQWLARGGIMGPHFSFSWYRGSPIGRERKTEEVSRTSVE 120
Query 121 DINIDGHSGFIAIGNEPSLGDSLCEVGIQFSDDFIEWSVSFSQKPFPLPCDIAKELTRQS 180
DINIDGHSGFIAIG P++GD+LCE+GIQF DDFIEWSVSF+QKPFP PCD+AKELTRQS
Sbjct 121 DINIDGHSGFIAIGTAPTMGDNLCEIGIQFKDDFIEWSVSFAQKPFPDPCDVAKELTRQS 180
Query 181 IANSK 185
IAN+K
Sbjct 181 IANAK 185
>gi|296170178|ref|ZP_06851773.1| LprB protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295895170|gb|EFG74886.1| LprB protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=135
Score = 260 bits (664), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 122/135 (91%), Positives = 129/135 (96%), Gaps = 0/135 (0%)
Query 51 FFPQCGGVSDQTVTELTRVTGLVNTAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERK 110
FPQCGGVSDQTV ELT+ TGL+NTA+NSVGCQWLAGGGILGPHFSFSWYRGSPIGRERK
Sbjct 1 MFPQCGGVSDQTVAELTKATGLINTARNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERK 60
Query 111 TEELSRASVEDINIDGHSGFIAIGNEPSLGDSLCEVGIQFSDDFIEWSVSFSQKPFPLPC 170
TEELSRASV+DINI+GHSGFIAIGNEP+LGDSLCEVGIQF DDFIEWS+SFSQKPFP PC
Sbjct 61 TEELSRASVDDININGHSGFIAIGNEPNLGDSLCEVGIQFQDDFIEWSISFSQKPFPPPC 120
Query 171 DIAKELTRQSIANSK 185
DIAKEL RQSIANSK
Sbjct 121 DIAKELARQSIANSK 135
>gi|118469410|ref|YP_889258.1| LprB protein [Mycobacterium smegmatis str. MC2 155]
gi|118170697|gb|ABK71593.1| LprB protein [Mycobacterium smegmatis str. MC2 155]
Length=177
Score = 248 bits (633), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 123/178 (70%), Positives = 140/178 (79%), Gaps = 3/178 (1%)
Query 10 LAVSALVALFPAVAGCSDSGDNKPGATIPSTPANAEGRHGPFFPQCGGVSDQTVTELTRV 69
+AV A A+ P A CS P +P+ HGPFFPQCGG+SDQTV+ELT+V
Sbjct 1 MAVLA-AAMVPVFAACSTDEPASPEVPQSESPSAGAPTHGPFFPQCGGISDQTVSELTQV 59
Query 70 TGLVNTAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVEDINIDGHSG 129
GLVNTA NS GCQWL GG ILGPHFSF+W+RGSPIGRERKTEELSRASVEDINI+GH G
Sbjct 60 PGLVNTATNSSGCQWLQGGSILGPHFSFTWFRGSPIGRERKTEELSRASVEDINIEGHGG 119
Query 130 FIAIGNEP-SLGD-SLCEVGIQFSDDFIEWSVSFSQKPFPLPCDIAKELTRQSIANSK 185
FIA+G +P GD +LCE+GIQF DDFIEWSVS+SQKPFP PC++AKELTRQSI NSK
Sbjct 120 FIAVGEDPLKPGDVTLCEIGIQFDDDFIEWSVSYSQKPFPDPCEVAKELTRQSIVNSK 177
>gi|108800903|ref|YP_641100.1| putative lipoprotein LprB [Mycobacterium sp. MCS]
gi|119870043|ref|YP_939995.1| putative lipoprotein LprB [Mycobacterium sp. KMS]
gi|126436528|ref|YP_001072219.1| putative lipoprotein LprB [Mycobacterium sp. JLS]
gi|108771322|gb|ABG10044.1| putative lipoprotein LprB [Mycobacterium sp. MCS]
gi|119696132|gb|ABL93205.1| putative lipoprotein LprB [Mycobacterium sp. KMS]
gi|126236328|gb|ABN99728.1| putative lipoprotein LprB [Mycobacterium sp. JLS]
Length=195
Score = 241 bits (616), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 113/160 (71%), Positives = 135/160 (85%), Gaps = 0/160 (0%)
Query 26 SDSGDNKPGATIPSTPANAEGRHGPFFPQCGGVSDQTVTELTRVTGLVNTAKNSVGCQWL 85
SDS PG + ST A + +HGPFFPQCGG+SDQT+++LT V GLVNTA SVGCQWL
Sbjct 36 SDSEPAAPGESPQSTQAQQDIKHGPFFPQCGGISDQTMSQLTEVPGLVNTATTSVGCQWL 95
Query 86 AGGGILGPHFSFSWYRGSPIGRERKTEELSRASVEDINIDGHSGFIAIGNEPSLGDSLCE 145
AGG I+GPHFSF+ +RGSPIGRERKTEELSR SVEDINI+GH GFIA G++ +LG +LCE
Sbjct 96 AGGSIVGPHFSFTHFRGSPIGRERKTEELSRTSVEDINIEGHDGFIATGDDLALGTNLCE 155
Query 146 VGIQFSDDFIEWSVSFSQKPFPLPCDIAKELTRQSIANSK 185
+GIQF +DFIEWSVSF++KPFP PC++AKELTRQSI NS+
Sbjct 156 IGIQFDNDFIEWSVSFAEKPFPDPCEVAKELTRQSIVNSR 195
>gi|120405392|ref|YP_955221.1| putative lipoprotein LprB [Mycobacterium vanbaalenii PYR-1]
gi|119958210|gb|ABM15215.1| putative lipoprotein LprB [Mycobacterium vanbaalenii PYR-1]
Length=193
Score = 236 bits (603), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 120/187 (65%), Positives = 145/187 (78%), Gaps = 8/187 (4%)
Query 2 RRKVRRLTLAVSALVALFPAVAGCSDSGDNKPGATIPSTPANAEG-RHGPFFPQCGGVSD 60
RR V+ L +A +A++ P + CSDS G +PST A + HGPFFP+CGG+SD
Sbjct 12 RRPVKALAVAAAAMI---PVLGACSDS--EPTGPVVPSTEAPQQSVSHGPFFPECGGISD 66
Query 61 QTVTELTRVTGLVNTAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVE 120
+T+ +LT V GLVNTAK SVGCQWL+GG ILGPHFSFSW+RGSPIGRERKT ELSR SVE
Sbjct 67 ETIAQLTEVPGLVNTAKTSVGCQWLSGGSILGPHFSFSWFRGSPIGRERKTMELSRTSVE 126
Query 121 DINIDGHSGFIAIGN--EPSLGDSLCEVGIQFSDDFIEWSVSFSQKPFPLPCDIAKELTR 178
DINI+GH GFI I +P +G +LCEVGIQF+DDFIEWS+S++Q PFP C++AKELTR
Sbjct 127 DINIEGHDGFIGINEDPDPKIGVNLCEVGIQFNDDFIEWSISYAQPPFPDACEVAKELTR 186
Query 179 QSIANSK 185
QSI NSK
Sbjct 187 QSIVNSK 193
>gi|145222840|ref|YP_001133518.1| putative lipoprotein LprB [Mycobacterium gilvum PYR-GCK]
gi|145215326|gb|ABP44730.1| putative lipoprotein LprB [Mycobacterium gilvum PYR-GCK]
Length=193
Score = 229 bits (583), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 112/169 (67%), Positives = 127/169 (76%), Gaps = 3/169 (1%)
Query 19 FPAVAGCSDSGDNKPGATIPSTPANAEGRHGPFFPQCGGVSDQTVTELTRVTGLVNTAKN 78
P +A CSDS P P HGPFFPQCGG+SD+ V LT V GLVNTAK
Sbjct 26 MPVLAACSDSEPQGPSVPTSEEPQQNVA-HGPFFPQCGGLSDEEVGRLTEVPGLVNTAKT 84
Query 79 SVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVEDINIDGHSGFIAIGN--E 136
SVGCQWL+GG ILGPHFSFSW+RGSPIGRERKT ELSR SVED++I+GH GFI I +
Sbjct 85 SVGCQWLSGGSILGPHFSFSWFRGSPIGRERKTMELSRTSVEDLSIEGHDGFIGINEDPD 144
Query 137 PSLGDSLCEVGIQFSDDFIEWSVSFSQKPFPLPCDIAKELTRQSIANSK 185
P +G +LCEVGIQF DDFIEWSVS++Q P+P CD+AKELTRQSI NSK
Sbjct 145 PKIGINLCEVGIQFGDDFIEWSVSYAQPPYPNACDVAKELTRQSIVNSK 193
>gi|315443307|ref|YP_004076186.1| hypothetical protein Mspyr1_16850 [Mycobacterium sp. Spyr1]
gi|315261610|gb|ADT98351.1| hypothetical protein Mspyr1_16850 [Mycobacterium sp. Spyr1]
Length=179
Score = 229 bits (583), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 112/169 (67%), Positives = 127/169 (76%), Gaps = 3/169 (1%)
Query 19 FPAVAGCSDSGDNKPGATIPSTPANAEGRHGPFFPQCGGVSDQTVTELTRVTGLVNTAKN 78
P +A CSDS P P HGPFFPQCGG+SD+ V LT V GLVNTAK
Sbjct 12 MPVLAACSDSEPQGPSVPTSEEPQQNVA-HGPFFPQCGGLSDEEVGRLTEVPGLVNTAKT 70
Query 79 SVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVEDINIDGHSGFIAIGN--E 136
SVGCQWL+GG ILGPHFSFSW+RGSPIGRERKT ELSR SVED++I+GH GFI I +
Sbjct 71 SVGCQWLSGGSILGPHFSFSWFRGSPIGRERKTMELSRTSVEDLSIEGHDGFIGINEDPD 130
Query 137 PSLGDSLCEVGIQFSDDFIEWSVSFSQKPFPLPCDIAKELTRQSIANSK 185
P +G +LCEVGIQF DDFIEWSVS++Q P+P CD+AKELTRQSI NSK
Sbjct 131 PKIGINLCEVGIQFGDDFIEWSVSYAQPPYPNACDVAKELTRQSIVNSK 179
>gi|169628507|ref|YP_001702156.1| putative lipoprotein LprB [Mycobacterium abscessus ATCC 19977]
gi|169240474|emb|CAM61502.1| Putative lipoprotein LprB precursor [Mycobacterium abscessus]
Length=195
Score = 184 bits (466), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 96/179 (54%), Positives = 118/179 (66%), Gaps = 8/179 (4%)
Query 14 ALVALFPAVAGCS--DSGDNKPG----ATIPSTPANAEGRHGPFFPQCGGVSDQTVTELT 67
ALV + + GCS D D G AT P ++G GP F +CGGVSDQ + ++T
Sbjct 17 ALVMVALVLTGCSGGDKSDQPNGTASNATAPQQ-TKSKGVDGPMFTECGGVSDQAMMQMT 75
Query 68 RVTGLVNTAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVEDINIDGH 127
+V GLV TAKNSVGC WL GG I+GPHFSF+WYRGSPIGRER TEE +R SVEDI I G+
Sbjct 76 KVVGLVGTAKNSVGCVWLRGGSIVGPHFSFNWYRGSPIGRERATEERTRPSVEDIEIAGY 135
Query 128 SGFIAIGNEPSLGDSLCEVGIQFSDDFIEWSVSFS-QKPFPLPCDIAKELTRQSIANSK 185
GFIA P +LCE+G+ F +DFIEWS++F P CD+AK+LT SI +K
Sbjct 136 KGFIATNGYPGTVTTLCEIGMDFGNDFIEWSINFEPGSGAPDSCDVAKQLTETSIKAAK 194
>gi|262203744|ref|YP_003274952.1| RNA-binding S4 domain-containing protein [Gordonia bronchialis
DSM 43247]
gi|262087091|gb|ACY23059.1| RNA-binding S4 domain protein [Gordonia bronchialis DSM 43247]
Length=293
Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/187 (48%), Positives = 112/187 (60%), Gaps = 14/187 (7%)
Query 2 RRKVRRLT--LAVSALVALFPAVAGCSDSGDNKPGATIPSTPANAEGR--HGPFFPQCGG 57
RR++ +L ++ + AL VAGCS S D P TP A GR GPFF +CGG
Sbjct 110 RRQLDQLRGGFLIALIAALMLIVAGCS-SDDTPSDPAKPPTP-QAPGRAGDGPFFGECGG 167
Query 58 VSDQTVTELTRVTGLVNTAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRA 117
++ + V+ +TR+ L NT KN C+W + G GP SF+WYRGSPIGRER TE+LSRA
Sbjct 168 LTTEEVSSITRLGVLTNTIKNPSVCEWDSTGTRTGPVASFNWYRGSPIGRERATEQLSRA 227
Query 118 SVEDINIDGHSGFIAIGNEPSLGDSLCEVGIQFSDDFIEWSVSF-SQKPFPLP--CDIAK 174
S DI I GH GFIA ++CEVGI+F DF EWSVS S P + CD +
Sbjct 228 STTDIEIKGHRGFIA-----HDATAICEVGIEFGADFFEWSVSAGSNSPLTIEQVCDATR 282
Query 175 ELTRQSI 181
EL+R SI
Sbjct 283 ELSRLSI 289
>gi|226305248|ref|YP_002765206.1| hypothetical protein RER_17590 [Rhodococcus erythropolis PR4]
gi|226184363|dbj|BAH32467.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length=182
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/186 (40%), Positives = 100/186 (54%), Gaps = 10/186 (5%)
Query 3 RKVRRLTLAVSALVALFPAVAGCS--DSGDNKPGATIPSTPANAEGRHGPFFPQCGGVSD 60
R + + +V A+ AV GCS D ++PG S A A GP F +CG V+D
Sbjct 4 RTLTSIGTSVLVSAAVLSAVVGCSSDDGAVDQPGDGAGSQ-ALAPTDPGPMFAECGSVTD 62
Query 61 QTVTELTRVTGLVNTAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVE 120
+ V + T +N VGCQW G GP SFSWYRGSPIGRER +L +
Sbjct 63 EEVVNAFNLGAFATTTRNGVGCQWEVAGSS-GPSVSFSWYRGSPIGRERAGSDLLGRPAD 121
Query 121 DINIDGHSGFIAIGNEPSLGDSLCEVGIQFSDDFIEWSVSFS-QKPFPLPCDIAKELTRQ 179
DI I GH GFIA S SLCE+GI F DF+ WS+++ P PC +A++L +
Sbjct 122 DITIGGHQGFIA-----STAGSLCELGIAFGGDFVHWSITYGLLPPTADPCTVARDLMEK 176
Query 180 SIANSK 185
+++ ++
Sbjct 177 TVSRAQ 182
>gi|289569284|ref|ZP_06449511.1| predicted protein [Mycobacterium tuberculosis T17]
gi|289543038|gb|EFD46686.1| predicted protein [Mycobacterium tuberculosis T17]
Length=100
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/61 (100%), Positives = 61/61 (100%), Gaps = 0/61 (0%)
Query 1 VRRKVRRLTLAVSALVALFPAVAGCSDSGDNKPGATIPSTPANAEGRHGPFFPQCGGVSD 60
VRRKVRRLTLAVSALVALFPAVAGCSDSGDNKPGATIPSTPANAEGRHGPFFPQCGGVSD
Sbjct 6 VRRKVRRLTLAVSALVALFPAVAGCSDSGDNKPGATIPSTPANAEGRHGPFFPQCGGVSD 65
Query 61 Q 61
Q
Sbjct 66 Q 66
>gi|229490542|ref|ZP_04384380.1| LprB protein [Rhodococcus erythropolis SK121]
gi|229322362|gb|EEN88145.1| LprB protein [Rhodococcus erythropolis SK121]
Length=182
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/187 (41%), Positives = 102/187 (55%), Gaps = 12/187 (6%)
Query 3 RKVRRLTLAVSALVALFPAVAGCSDSGD---NKPGATIPSTPANAEGRHGPFFPQCGGVS 59
R + + +V A+ AV GCS SGD ++PG S A A GP F +CG V+
Sbjct 4 RTLTSIGTSVLVSAAVLSAVVGCS-SGDGSVDQPGDGAGSQ-ALAPTDPGPMFAECGSVT 61
Query 60 DQTVTELTRVTGLVNTAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASV 119
D+ V + T +N VGCQW G GP SFSWYRGSPIGRER +L
Sbjct 62 DEEVVNAFNLGAFATTTRNGVGCQWEVAGSN-GPSVSFSWYRGSPIGRERAGSDLLGRPA 120
Query 120 EDINIDGHSGFIAIGNEPSLGDSLCEVGIQFSDDFIEWSVSFS-QKPFPLPCDIAKELTR 178
+DI I GH GFIA S SLCE+GI F DF+ WS+++ P PC +A++L
Sbjct 121 DDITIGGHQGFIA-----STAGSLCELGIAFGGDFVHWSITYGLLPPTADPCTVARDLME 175
Query 179 QSIANSK 185
++++ ++
Sbjct 176 KTVSRAQ 182
>gi|325675381|ref|ZP_08155065.1| lipoprotein LprB [Rhodococcus equi ATCC 33707]
gi|325553352|gb|EGD23030.1| lipoprotein LprB [Rhodococcus equi ATCC 33707]
Length=197
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/168 (43%), Positives = 92/168 (55%), Gaps = 16/168 (9%)
Query 23 AGCS--DSGDNKPGATIPSTPANAEGRHGPFFPQCGGVSDQTVTELTRVTGLVNTAKNSV 80
AGCS DS D +T + A G GPFF +CG V+D+ V E V G +N+V
Sbjct 41 AGCSPGDSADESR-----ATESGAAG-SGPFFGECGSVTDEEVAEAVGVPGFAGVVRNTV 94
Query 81 GCQWLAG--GGILGPHFSFSWYRGSPIGRERKTEELSRASVEDINIDGHSGFIAIGNEPS 138
GC+W PHF+FSWYRGSPIGRER E+ DI I GH GF E S
Sbjct 95 GCEWQTSPDQDRNAPHFAFSWYRGSPIGRERAGSEMIGRPAVDIEIGGHPGF-----ESS 149
Query 139 LGDSLCEVGIQFSDDFIEWSVSFSQ-KPFPLPCDIAKELTRQSIANSK 185
L LCE+G+QF DDF+ WS+S+ + P PC A+ L ++A +
Sbjct 150 LSSRLCELGVQFGDDFVHWSISYGKTDPTDDPCVAARRLAELTVARGQ 197
>gi|312140982|ref|YP_004008318.1| lipoprotein [Rhodococcus equi 103S]
gi|311890321|emb|CBH49639.1| putative lipoprotein [Rhodococcus equi 103S]
Length=182
Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/168 (43%), Positives = 92/168 (55%), Gaps = 16/168 (9%)
Query 23 AGCS--DSGDNKPGATIPSTPANAEGRHGPFFPQCGGVSDQTVTELTRVTGLVNTAKNSV 80
AGCS DS D +T + A G GPFF +CG V+D+ V E V G +N+V
Sbjct 26 AGCSPGDSADESR-----ATESGAAG-SGPFFGECGSVTDEEVAEAVGVPGFAGVVRNTV 79
Query 81 GCQWLAG--GGILGPHFSFSWYRGSPIGRERKTEELSRASVEDINIDGHSGFIAIGNEPS 138
GC+W PHF+FSWYRGSPIGRER E+ D+ I GH GF E S
Sbjct 80 GCEWQTSPDQDRNAPHFAFSWYRGSPIGRERAGSEMIGRPAVDVEIGGHPGF-----ESS 134
Query 139 LGDSLCEVGIQFSDDFIEWSVSFSQ-KPFPLPCDIAKELTRQSIANSK 185
L LCE+G+QF DDF+ WS+S+ + P PC A+ L ++A +
Sbjct 135 LSSRLCELGVQFGDDFVHWSISYGKTDPTDDPCVAARRLAELTVARGQ 182
>gi|343926059|ref|ZP_08765571.1| putative RNA-binding protein [Gordonia alkanivorans NBRC 16433]
gi|343763985|dbj|GAA12497.1| putative RNA-binding protein [Gordonia alkanivorans NBRC 16433]
Length=335
Score = 121 bits (303), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 69/162 (43%), Positives = 89/162 (55%), Gaps = 10/162 (6%)
Query 24 GCSDSGDNKPGATIPSTP-ANAEGRHGPFFPQCGGVSDQTVTELTRVTGLVNTAKNSVGC 82
GCSD + P P+TP A A+ GPFF +CGGV+ + VT +T GL T N+ C
Sbjct 176 GCSDDEPSDPNR--PNTPEAPAQAGSGPFFGKCGGVTLEEVTRITGFGGLTETVNNTSVC 233
Query 83 QWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVEDINIDGHSGFIAIGNEPSLGDS 142
+W G G SF+WYRGSPIGRE +LSR + IDGH GFI +
Sbjct 234 EWDTTGSRTGAVASFNWYRGSPIGREEANVKLSRDVTNKLEIDGHQGFIGY----TQSGQ 289
Query 143 LCEVGIQFSDDFIEWSV---SFSQKPFPLPCDIAKELTRQSI 181
+CEVG+ F DF EWS+ + +P CD A+EL + SI
Sbjct 290 ICEVGMGFGADFFEWSIRGDAVEARPIEQICDAARELAKLSI 331
>gi|226361023|ref|YP_002778801.1| hypothetical protein ROP_16090 [Rhodococcus opacus B4]
gi|226239508|dbj|BAH49856.1| hypothetical protein [Rhodococcus opacus B4]
Length=174
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/138 (45%), Positives = 82/138 (60%), Gaps = 7/138 (5%)
Query 49 GPFFPQCGGVSDQTVTELTRVTGLVNTAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGRE 108
GPFF QCG V+D V + + +NSVGC+W G I GP +FSWYRGSPIGRE
Sbjct 43 GPFFGQCGSVTDDEVAKAFGMPPFTGVTRNSVGCEWETAG-IGGPSVTFSWYRGSPIGRE 101
Query 109 RKTEELSRASVEDINIDGHSGFIAIGNEPSLGDSLCEVGIQFSDDFIEWSVSFSQ-KPFP 167
R EL DI+I GH GFIA S LCE+G++F DF+ WSV ++ +P
Sbjct 102 RAGSELIGRPATDIDIQGHPGFIA-----SSEGILCELGVEFGGDFVHWSVMYADAQPAA 156
Query 168 LPCDIAKELTRQSIANSK 185
PC +A++L S++ +K
Sbjct 157 DPCKVARDLAELSVSRAK 174
>gi|111018923|ref|YP_701895.1| lipoprotein LprB [Rhodococcus jostii RHA1]
gi|110818453|gb|ABG93737.1| possible lipoprotein LprB [Rhodococcus jostii RHA1]
Length=174
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/138 (45%), Positives = 82/138 (60%), Gaps = 7/138 (5%)
Query 49 GPFFPQCGGVSDQTVTELTRVTGLVNTAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGRE 108
GPFF QCG V+D V + + +NSVGC+W G I GP +FSWYRGSPIGRE
Sbjct 43 GPFFGQCGSVTDDEVAKAFGMPPFTGVTRNSVGCEWETAG-IGGPSVTFSWYRGSPIGRE 101
Query 109 RKTEELSRASVEDINIDGHSGFIAIGNEPSLGDSLCEVGIQFSDDFIEWSVSFSQ-KPFP 167
R EL DI+I GH GFIA S LCE+G++F DF+ WSV ++ +P
Sbjct 102 RAGSELIGRPATDIDIQGHPGFIA-----SSEGILCELGVEFGGDFVHWSVMYADAQPAA 156
Query 168 LPCDIAKELTRQSIANSK 185
PC +A++L S++ +K
Sbjct 157 DPCTVARDLAELSVSRAK 174
>gi|317509028|ref|ZP_07966659.1| hypothetical protein HMPREF9336_03031 [Segniliparus rugosus ATCC
BAA-974]
gi|316252683|gb|EFV12122.1| hypothetical protein HMPREF9336_03031 [Segniliparus rugosus ATCC
BAA-974]
Length=203
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/181 (39%), Positives = 96/181 (54%), Gaps = 8/181 (4%)
Query 6 RRLTLAVSALVALFPAVAGCSDSGDNKPGATIPSTPANAEGRHGPFFPQCGGVSDQTVTE 65
RR +AL A V+GCS+ G KP P+ PA +GP F +C G++ Q V +
Sbjct 29 RRSWRVFAALCASVFLVSGCSEDGAKKPAD--PNAPAGQAKPNGPMFAECAGLTPQEVAQ 86
Query 66 LTRVTGLVNTAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVEDINID 125
+NSV CQW GG SF+WYRGSPIGRE E +R V+DI+I
Sbjct 87 KLGGANARVQFRNSVTCQWAIGGT---KQASFTWYRGSPIGREESWEGKTRDGVKDISIR 143
Query 126 GHSGFIAIGNEPSLGDSLCEVGIQFSDDFIEWSVSF-SQKPFPLPCDIAKELTRQSIANS 184
+ GF+ + + G +LCE+G+ F +DFIEWSV + P C+ ++L SI +
Sbjct 144 NYPGFLIY--QATQGQALCELGVDFGNDFIEWSVELGALAPGQDRCEGTRQLAEMSIDRA 201
Query 185 K 185
K
Sbjct 202 K 202
>gi|262203743|ref|YP_003274951.1| hypothetical protein Gbro_3882 [Gordonia bronchialis DSM 43247]
gi|262087090|gb|ACY23058.1| hypothetical protein Gbro_3882 [Gordonia bronchialis DSM 43247]
Length=187
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/169 (41%), Positives = 91/169 (54%), Gaps = 17/169 (10%)
Query 22 VAGCSDSGDN--KPGATI-PSTPANAEGRHGPFFPQCGGVSDQTVTELTRVTGLVNTAKN 78
+ C+ + D+ PGA PS+P A GPFF CGGVS V +T + T +N
Sbjct 23 LGACTSNSDDTADPGAPAGPSSPGRAG--DGPFFGSCGGVSTDEVVAVTGFGPMAVTVEN 80
Query 79 SVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVEDINIDGHSGFIAIGNEPS 138
+ C W + G SF+WYRGSPI RER T +L++ +V DI I+GH GFIA + P
Sbjct 81 TSSCVWGSDERGTGAVASFNWYRGSPIERERATVQLTKDTVVDIEINGHRGFIA--SSP- 137
Query 139 LGDSLCEVGIQFSDDFIEWSVSFSQK------PFPLPCDIAKELTRQSI 181
++CEVGI F DF EWSV ++ C K+L+R SI
Sbjct 138 ---TICEVGIAFGADFFEWSVRAGRRQAEGGPTIDQICSATKQLSRYSI 183
>gi|326384267|ref|ZP_08205949.1| RNA-binding S4 domain-containing protein [Gordonia neofelifaecis
NRRL B-59395]
gi|326197132|gb|EGD54324.1| RNA-binding S4 domain-containing protein [Gordonia neofelifaecis
NRRL B-59395]
Length=290
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/166 (38%), Positives = 87/166 (53%), Gaps = 20/166 (12%)
Query 24 GCS-DSGDNKPGATIPSTPANAEGRHGPFFPQCGGVSDQTVTELTRVTGLVNTAKNSVGC 82
GCS + G ++ GAT TP + GP F +CGG++ V ++ + GL N+ C
Sbjct 133 GCSSNGGGDEAGAT--ETP---KAGSGPQFARCGGLTVDDVVSMSGMPGLKLAIDNTSTC 187
Query 83 QWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVEDINIDGHSGFIAIGNEPSLGDS 142
+W A G SF+WYRGSPIGRER TE+LSR S +D +DG GFIA +
Sbjct 188 EWRADAQRNG-SVSFNWYRGSPIGRERGTEQLSRDSTQDYEVDGQPGFIA------HTEG 240
Query 143 LCEVGIQFSDDFIEWSVSFSQKPFPLP-------CDIAKELTRQSI 181
+CE I + DFIE S++ P P C AK +T + +
Sbjct 241 ICETAIAWDADFIEISLASPSSPATGPTINQDQLCGAAKRITEKVV 286
>gi|296395083|ref|YP_003659967.1| hypothetical protein Srot_2702 [Segniliparus rotundus DSM 44985]
gi|296182230|gb|ADG99136.1| hypothetical protein Srot_2702 [Segniliparus rotundus DSM 44985]
Length=207
Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/166 (35%), Positives = 84/166 (51%), Gaps = 12/166 (7%)
Query 22 VAGCSDSGDNKP-GATIPSTPANAEGRHGPFFPQCGGVSDQTVTELTRVTGLVNTAKNSV 80
+AGC+ G P G + PA +GP F +C G++ Q V + +NSV
Sbjct 51 LAGCAGGGAKTPAGGDRQAGPAKP---NGPMFAECAGLTPQEVAQKLGAASARVQFRNSV 107
Query 81 GCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVEDINIDGHSGFIAIGNEPSLG 140
CQW G + SF+WYRGSPIGRE E +R V+ I I G+ GF+ +
Sbjct 108 TCQWTVAGSM---QASFTWYRGSPIGREESWEGKTRDDVQRITIRGYPGFLIHQQD---- 160
Query 141 DSLCEVGIQFSDDFIEWSVSFSQK-PFPLPCDIAKELTRQSIANSK 185
+LCE+G F +DFIEWSV ++ C+ ++L +I +K
Sbjct 161 QNLCELGADFGNDFIEWSVELGRRGSGQNDCEGTRQLAELTIDRAK 206
>gi|111018591|ref|YP_701563.1| lipoprotein [Rhodococcus jostii RHA1]
gi|110818121|gb|ABG93405.1| possible lipoprotein [Rhodococcus jostii RHA1]
Length=180
Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/182 (34%), Positives = 84/182 (47%), Gaps = 13/182 (7%)
Query 7 RLTLAVSALVALFPAVAGCS--DSGDNKPGATIPSTPANAEGRHGPFFPQCGGVSDQTVT 64
RLT+ S LVA +AGC D + P + +T A+ G F +CG ++D V
Sbjct 9 RLTVRASCLVAAAVVLAGCGAGDGSETDPAVSTQTTAVAAQ--PGAFVGECGSLTDAEVY 66
Query 65 ELTRVTGLVNTAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVEDINI 124
E +T L ++N + C+W A GG + F+WYRGSPI RER + V D+ I
Sbjct 67 ERAGITALTPVSRNGIKCRWEADGG--ERYVMFTWYRGSPIDRERSVAKGIGHEVHDLEI 124
Query 125 DGHSGFIAIGNEPSLGDSLCEVGIQFSDDFIEWSVSFSQKPFPL-PCDIAKELTRQSIAN 183
GH GF S CEV + DF+ W V + P PC L R ++
Sbjct 125 AGHRGF------SSQNVGFCEVALGTGSDFVHWLVRYGTATAPSDPCAAPTALGRLTLEK 178
Query 184 SK 185
K
Sbjct 179 VK 180
>gi|54027054|ref|YP_121296.1| hypothetical protein nfa50800 [Nocardia farcinica IFM 10152]
gi|54018562|dbj|BAD59932.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=177
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/181 (35%), Positives = 95/181 (53%), Gaps = 10/181 (5%)
Query 7 RLTLAVSALVALFPAVAGCSDSGDNKPGATIPSTPANAEGRHGPFFPQCGGVSDQTVTEL 66
R+ A+ +AL ++ C GD+ G+ P P GPF +CG V+D V ++
Sbjct 5 RIPSALITGLALVLTLSACGSGGDS--GSDTPLRPPPKVASLGPFVGECGHVTDDEVRDI 62
Query 67 TRVTGLVNTAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERK-TEELSRASVEDINID 125
+ L KNSVGC + + GI P +F+ YRGSPI RE+ + RA + I +
Sbjct 63 AGLGTLSQVFKNSVGCNYQS-AGIGSPSVTFASYRGSPIEREKAWVSNVGRAP-DAIEVG 120
Query 126 GHSGFIAIGNEPSLGDSLCEVGIQFSDDFIEWSVSFS-QKPFPLPCDIAKELTRQSIANS 184
G GF A+ +PS ++C++ +Q DDF EWS+S+ P PCD ++L ++A
Sbjct 121 GRPGFAAL--DPS--GAVCDLAVQLDDDFFEWSMSYGFFGPLDNPCDKTRKLAELTVARL 176
Query 185 K 185
K
Sbjct 177 K 177
>gi|333918121|ref|YP_004491702.1| hypothetical protein AS9A_0445 [Amycolicicoccus subflavus DQS3-9A1]
gi|333480342|gb|AEF38902.1| hypothetical protein AS9A_0445 [Amycolicicoccus subflavus DQS3-9A1]
Length=183
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/186 (34%), Positives = 94/186 (51%), Gaps = 9/186 (4%)
Query 3 RKVRRLTLAVSALVALFPAVAGCSD--SGDNKPGATIPSTPANAEGRHGPFFPQCGGVSD 60
R +RR+ ++A AL + CSD +++P + P + G FF +CGGVS
Sbjct 4 RGLRRVGAGLAA--ALCVLLTACSDGPETESEPHQNEQNEPGQVDA-AGLFFGECGGVSA 60
Query 61 QTVTELTRVTGLVNTAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVE 120
+ + T ++ + +NSVGC+W G SFSWYRGSPIGRER ELS V
Sbjct 61 DELMQTTGISNVRLIERNSVGCRW-EDPNFFGARASFSWYRGSPIGRERALVELSGRDVF 119
Query 121 DINIDGHSGFIAIGNEPSLGDSLCEVGIQFSDDFIEWSVSFSQKPFPLP-CDIAKELTRQ 179
D+++ G +G + G +CEV I+ DF WSV F Q P C+ + L
Sbjct 120 DVSMQGPNG--ELHGFAGRGVGICEVSIESESDFFVWSVVFDQLSPPRDMCERVEALAEM 177
Query 180 SIANSK 185
++ ++
Sbjct 178 TVTRAE 183
>gi|226360710|ref|YP_002778488.1| hypothetical protein ROP_12960 [Rhodococcus opacus B4]
gi|226239195|dbj|BAH49543.1| hypothetical protein [Rhodococcus opacus B4]
Length=179
Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/183 (34%), Positives = 84/183 (46%), Gaps = 16/183 (8%)
Query 7 RLTLAVSALVALFPAVAGCSDSG--DNKPGA-TIPSTPANAEGRHGPFFPQCGGVSDQTV 63
R + + L+A +AGC G D P A T S PA G F +CG ++D V
Sbjct 9 RPAVRATCLLAATVVLAGCGSGGGSDTDPAAATTTSVPAQP----GAFVGECGSLTDAEV 64
Query 64 TELTRVTGLVNTAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVEDIN 123
E + GL ++N + C+W A GG + F+WYRGSPI RER + V D+
Sbjct 65 YERAGIAGLTPVSRNGIKCRWEADGGER--YVMFTWYRGSPIDRERSVAKGIGHEVHDLE 122
Query 124 IDGHSGFIAIGNEPSLGDSLCEVGIQFSDDFIEWSVSFSQKPFPL-PCDIAKELTRQSIA 182
I GH GF S CEV + DF+ W V + P PC+ L R ++
Sbjct 123 IAGHRGF------SSQNVGFCEVALGTGSDFVHWLVRYGTGSAPSDPCEAPTALGRLTLE 176
Query 183 NSK 185
+K
Sbjct 177 KAK 179
>gi|118468258|ref|YP_885782.1| LprB protein [Mycobacterium smegmatis str. MC2 155]
gi|118169545|gb|ABK70441.1| LprB protein [Mycobacterium smegmatis str. MC2 155]
Length=173
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/186 (27%), Positives = 81/186 (44%), Gaps = 24/186 (12%)
Query 1 VRRKVRRLTLAVSALVALFPAVAGCSDSGDNKPGATIPSTPANAEGRHGPFFPQCGGVSD 60
+RR+VR ++A VA FP + + D P +P A G G C GV+D
Sbjct 1 MRRQVR-----LAAAVAAFPVLIAACGTHDPAPA---EQSPTAAPGFRGV---DCNGVTD 49
Query 61 QTVTELTRVTGLVNTAKNSVGCQW----LAGGGILGPHFSFSWYRGSPIGRERKTEELSR 116
+ + + GC W + G G S WYRGS + ER E+ +
Sbjct 50 ADIDKAVGSGMFEKAVVSDTGCFWQENTMLGTFGAGMGISTWWYRGSDMDTERTLEQNAG 109
Query 117 ASVEDINIDGHSGFIAIGNEPSLGDSLCEVGIQFSDDFIEWSVSFSQKPFPLP--CDIAK 174
++ ++++DG+ GF A ++C + + D I WS+ + P LP C + +
Sbjct 110 RTLTELSLDGNKGFKAADT------NVCSIYVAKGGDVITWSIQ-TMNPAALPDLCTVIE 162
Query 175 ELTRQS 180
+L + S
Sbjct 163 QLAQLS 168
>gi|120402288|ref|YP_952117.1| hypothetical protein Mvan_1277 [Mycobacterium vanbaalenii PYR-1]
gi|119955106|gb|ABM12111.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=178
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/154 (28%), Positives = 69/154 (45%), Gaps = 14/154 (9%)
Query 34 GATIPSTPANAEGRHGPFFP--QCGGVSDQTVTELTRVTGLVNTAKNSVGCQW----LAG 87
GA P++ +A+ GP F C G++D VTE + GC W + G
Sbjct 27 GADGPASGPDAQ-SAGPGFESVDCNGITDADVTEAAGSDLFTPAVVSDAGCFWQEDSMIG 85
Query 88 GGILGPHFSFSWYRGSPIGRERKTEELSRASVEDINIDGHSGFIAIGNEPSLGDSLCEVG 147
G S WYRGS + ER E+ + ++ ++ +DG+ GF A D+ C +
Sbjct 86 DFGAGMGISTWWYRGSDMDTERALEQRAGRTLTELTLDGNKGFKA------YDDTACSIY 139
Query 148 IQFSDDFIEWSV-SFSQKPFPLPCDIAKELTRQS 180
+ D I WS+ + + P C + ++L + S
Sbjct 140 VAKGGDVITWSIQTMNSATMPDLCSVIEQLAQLS 173
>gi|169628509|ref|YP_001702158.1| hypothetical protein MAB_1418 [Mycobacterium abscessus ATCC 19977]
gi|169240476|emb|CAM61504.1| Hypothetical protein MAB_1418 [Mycobacterium abscessus]
Length=172
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/139 (34%), Positives = 67/139 (49%), Gaps = 13/139 (9%)
Query 47 RHGPFFPQCGGVSDQTVTELTRVTGLVNTAKNSVGCQWLAGG--GILGPHFSFSWYRGSP 104
R GP + +CG ++ V + L AK GC W G +L P+ + SWYRGSP
Sbjct 36 RVGPAYSECGSLTTPDVAAVLHRADLKLVAKTPAGCTWTPNGYWSVL-PNVTLSWYRGSP 94
Query 105 IGRERKTEELSRASVEDINIDGHSGFIAIGNEPSLGDSLCEVGIQFSDD-FIEWSVSF-- 161
IGRER+ EE +R V D + G +GFI S +C +++ DD F E +V+
Sbjct 95 IGREREGEERTREEVRDFSAAGKNGFI------SSTYGMCVTALEYGDDQFFELAVTLLG 148
Query 162 -SQKPFPLPCDIAKELTRQ 179
C A +L+ Q
Sbjct 149 AGHGTSSAACHCAMKLSSQ 167
>gi|108797955|ref|YP_638152.1| hypothetical protein Mmcs_0982 [Mycobacterium sp. MCS]
gi|119867052|ref|YP_937004.1| hypothetical protein Mkms_1000 [Mycobacterium sp. KMS]
gi|126433618|ref|YP_001069309.1| hypothetical protein Mjls_1010 [Mycobacterium sp. JLS]
gi|108768374|gb|ABG07096.1| hypothetical protein Mmcs_0982 [Mycobacterium sp. MCS]
gi|119693141|gb|ABL90214.1| conserved hypothetical protein [Mycobacterium sp. KMS]
gi|126233418|gb|ABN96818.1| hypothetical protein Mjls_1010 [Mycobacterium sp. JLS]
Length=172
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/132 (29%), Positives = 59/132 (45%), Gaps = 13/132 (9%)
Query 55 CGGVSDQTVTELTRVTGLVNTAKNSVGCQW----LAGGGILGPHFSFSWYRGSPIGRERK 110
C GV+D+ +T+ T + GC W + G G S WYRGS + ER+
Sbjct 43 CNGVTDEEITKAAESTVFKKVVDSDAGCFWQEDTMLGTFGAGMGISTWWYRGSDMDVERE 102
Query 111 TEELSRASVEDINIDGHSGFIAIGNEPSLGDSLCEVGIQFSDDFIEWSVSFSQKPFPLP- 169
E+ + + ++++DG+ GF A C + + D I WS+ + P LP
Sbjct 103 LEQQAGRKITELSVDGNKGFKAADTNA------CSIYVAKGGDVITWSIQ-TMNPDMLPD 155
Query 170 -CDIAKELTRQS 180
C I + L + S
Sbjct 156 LCSITERLAQLS 167
>gi|169630935|ref|YP_001704584.1| putative lipoprotein LprB [Mycobacterium abscessus ATCC 19977]
gi|169242902|emb|CAM63930.1| Putative lipoprotein LprB precursor [Mycobacterium abscessus]
Length=184
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/161 (29%), Positives = 63/161 (40%), Gaps = 14/161 (8%)
Query 10 LAVSALVALFPAVAGCSD-------SGDNKPGATIPSTPANAEGRHGPF-FPQCGGVSDQ 61
L VSALV + GCS P A + + P G F CGG++D
Sbjct 6 LPVSALVIAAAVLVGCSSRPSSDGDGDGGSPDAQVTTVPEVNNGPGKGFKLGDCGGMTDA 65
Query 62 TVTELTRVTGLVNTAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVED 121
V V GL + +GC+W G G S WYRGS +E +VE
Sbjct 66 EVNAAVGVPGLKRDVDSLLGCRWSTGPGTGDTSISLYWYRGSSAQKEASVARNLGHTVEA 125
Query 122 INIDGHSGFIAIGNEPSLGDSLCEVGIQFSDDFIEWSVSFS 162
+ + G+ + N LCE+ DF+ WS+ S
Sbjct 126 VTTKSYPGY-RVSNV-----GLCELSAGSGPDFLHWSLQSS 160
>gi|145225656|ref|YP_001136334.1| hypothetical protein Mflv_5080 [Mycobacterium gilvum PYR-GCK]
gi|315446008|ref|YP_004078887.1| hypothetical protein Mspyr1_44980 [Mycobacterium sp. Spyr1]
gi|145218142|gb|ABP47546.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
gi|315264311|gb|ADU01053.1| hypothetical protein Mspyr1_44980 [Mycobacterium sp. Spyr1]
Length=176
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/150 (28%), Positives = 63/150 (42%), Gaps = 13/150 (8%)
Query 38 PSTPANAEGRHGPFF--PQCGGVSDQTVTELTRVTGLVNTAKNSVGCQWLAGGGI----L 91
P TP ++ G F C GV+D V + VGC W I
Sbjct 28 PVTPPSSPAAPGDGFESADCNGVTDADVARAAGPGMFAPAVVSDVGCFWQEDTMIEDVGA 87
Query 92 GPHFSFSWYRGSPIGRERKTEELSRASVEDINIDGHSGFIAIGNEPSLGDSLCEVGIQFS 151
G + WYRGS + ER E+L+ ++ + +ID + GF A DS C + +
Sbjct 88 GMGITTWWYRGSDMDTERDLEQLAGRTLTEWSIDDNEGFKA------FDDSACSIYVAKG 141
Query 152 DDFIEWSV-SFSQKPFPLPCDIAKELTRQS 180
D I WS+ + + P C + ++L + S
Sbjct 142 GDVITWSIQTMNSATMPDLCPVVEQLAQLS 171
>gi|226360711|ref|YP_002778489.1| hypothetical protein ROP_12970 [Rhodococcus opacus B4]
gi|226239196|dbj|BAH49544.1| hypothetical protein [Rhodococcus opacus B4]
Length=175
Score = 43.1 bits (100), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 48/185 (26%), Positives = 76/185 (42%), Gaps = 19/185 (10%)
Query 6 RRLTLAVSALVALFPAVAGCSDSGDNKPGATIPSTPANAEGRHGPFFP----QCGGVSDQ 61
RRL AV++++ L AGC G + G +P A+A+ P F +C V +
Sbjct 5 RRLAAAVASVMVL----AGC---GSSVTGTALPEGAASADDGGSPQFDKLLRECDAVPND 57
Query 62 TVTELTRVTGLVNTAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVED 121
+ E G+ +V C W +F W+ + + RER + VE
Sbjct 58 KIAETLHGAGIDQYFYGAV-CMWTVSSAAGSIDVTFGWFENNSLQRERAVADQLGYQVET 116
Query 122 INIDGHSGFIAIGNEPSLGD-SLCEVGIQFSDDFIEWSVSFSQKPFPLPCDIAKELTRQS 180
+I G S F A P GD + C + +S I W V + PCD A+ L +
Sbjct 117 TSIAGTSAFGA--RRP--GDAATCGITAAYS-GVITWWVQ-QRSGTGDPCDGARTLAELT 170
Query 181 IANSK 185
+ ++
Sbjct 171 LQRNQ 175
>gi|119867051|ref|YP_937003.1| hypothetical protein Mkms_0999 [Mycobacterium sp. KMS]
gi|119693140|gb|ABL90213.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=181
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 32/136 (24%), Positives = 57/136 (42%), Gaps = 4/136 (2%)
Query 48 HGPFFPQCGGVSDQTVTELTRVTGLVNTAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGR 107
+G +CG + D TV+E +V +V CQ++ G + +FSW+ + R
Sbjct 48 YGYVDNRCGLLEDSTVSETLDADEVVRPYSGAV-CQYVLMRGEVMVDVTFSWFDTGNLER 106
Query 108 ERKTEELSRASVEDINIDGHSGFIAIGNEPSLGDSLCEVGIQFSDDFIEWSVSFSQKPFP 167
ER A V D I+ H F+A + + C + W V + +
Sbjct 107 ERTLAAERGAQVSDTVIERHPAFLARRSTTGVA---CSATAAAGSGVLSWWVQYRGQKSG 163
Query 168 LPCDIAKELTRQSIAN 183
PC A++L ++++
Sbjct 164 DPCVDAEKLLSATLSS 179
>gi|108797954|ref|YP_638151.1| hypothetical protein Mmcs_0981 [Mycobacterium sp. MCS]
gi|126433617|ref|YP_001069308.1| hypothetical protein Mjls_1009 [Mycobacterium sp. JLS]
gi|108768373|gb|ABG07095.1| hypothetical protein Mmcs_0981 [Mycobacterium sp. MCS]
gi|126233417|gb|ABN96817.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=164
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/136 (24%), Positives = 57/136 (42%), Gaps = 4/136 (2%)
Query 48 HGPFFPQCGGVSDQTVTELTRVTGLVNTAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGR 107
+G +CG + D TV+E +V +V CQ++ G + +FSW+ + R
Sbjct 31 YGYVDNRCGLLEDSTVSETLDADEVVRPYSGAV-CQYVLMRGEVMVDVTFSWFDTGNLER 89
Query 108 ERKTEELSRASVEDINIDGHSGFIAIGNEPSLGDSLCEVGIQFSDDFIEWSVSFSQKPFP 167
ER A V D I+ H F+A + + C + W V + +
Sbjct 90 ERTLAAERGAQVSDTVIERHPAFLARRSTTGVA---CSATAAAGSGVLSWWVQYRGQKSG 146
Query 168 LPCDIAKELTRQSIAN 183
PC A++L ++++
Sbjct 147 DPCVDAEKLLSATLSS 162
>gi|118468055|ref|YP_885781.1| lipoprotein [Mycobacterium smegmatis str. MC2 155]
gi|118169342|gb|ABK70238.1| lipoprotein, putative [Mycobacterium smegmatis str. MC2 155]
Length=193
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/161 (23%), Positives = 64/161 (40%), Gaps = 20/161 (12%)
Query 39 STPANAEGRHGPFFPQCGGVSDQTVTELTRVTGLVNTAKNSVGCQWL------------- 85
S PA+ +G +CG + D TV E+ +V +V CQ++
Sbjct 35 SDPADPNRSYGYVDDRCGLLVDSTVQEILGADNVVRPYSGAV-CQYVLSRKTQPEPGPDE 93
Query 86 ---AGGGILGPHFSFSWYRGSPIGRERKTEELSRASVEDINIDGHSGFIAIGNEPSLGDS 142
+G G FSW+ + RER+ E A++ D I+ F+A + + +
Sbjct 94 GQESGAGPAMIDVVFSWFETGTLQREREVAEQREATITDTVIERQQAFLARRD---VTGA 150
Query 143 LCEVGIQFSDDFIEWSVSFSQKPFPLPCDIAKELTRQSIAN 183
C + W V F K PC A++L +++ +
Sbjct 151 ACSATAAAGSGVLSWWVQFRGKQDGDPCKDAEKLLSRTLQS 191
>gi|228999604|ref|ZP_04159181.1| LPXTG-site transpeptidase [Bacillus mycoides Rock3-17]
gi|229007151|ref|ZP_04164774.1| LPXTG-site transpeptidase [Bacillus mycoides Rock1-4]
gi|228754099|gb|EEM03521.1| LPXTG-site transpeptidase [Bacillus mycoides Rock1-4]
gi|228760130|gb|EEM09099.1| LPXTG-site transpeptidase [Bacillus mycoides Rock3-17]
Length=220
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/51 (32%), Positives = 28/51 (55%), Gaps = 2/51 (3%)
Query 78 NSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVEDINIDGHS 128
N +G ++ G ++G ++ F WY+G ++ TEE+ E I + GHS
Sbjct 19 NRIGLAFMIVGILMGTYYFFEWYKGKSSAQDLTTEEIKH--FEKIELKGHS 67
>gi|228993567|ref|ZP_04153475.1| LPXTG-site transpeptidase [Bacillus pseudomycoides DSM 12442]
gi|228766158|gb|EEM14804.1| LPXTG-site transpeptidase [Bacillus pseudomycoides DSM 12442]
Length=220
Score = 38.5 bits (88), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/51 (32%), Positives = 28/51 (55%), Gaps = 2/51 (3%)
Query 78 NSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVEDINIDGHS 128
N +G ++ G ++G ++ F WY+G ++ TEE+ E I + GHS
Sbjct 19 NRIGFAFMIVGILMGTYYFFEWYKGKSSAQDLTTEEIKH--FEKIELKGHS 67
>gi|120402287|ref|YP_952116.1| hypothetical protein Mvan_1276 [Mycobacterium vanbaalenii PYR-1]
gi|119955105|gb|ABM12110.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=183
Score = 37.4 bits (85), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 25/88 (29%), Positives = 39/88 (45%), Gaps = 4/88 (4%)
Query 48 HGPFFPQCGGVSDQTVTELTRVTGLVNTAKNSVGCQWLAG---GGILGPHFSFSWYRGSP 104
+G +CG + D TV + + +V CQ++ GG +FSW+
Sbjct 47 YGYVDNRCGLLDDSTVQAMLGADQITRPYSGAV-CQYILARRSGGAPTVDVTFSWFDTGS 105
Query 105 IGRERKTEELSRASVEDINIDGHSGFIA 132
+ RER ASV DI ++ H+ F A
Sbjct 106 LQRERDLATARGASVTDIVVERHAAFSA 133
Lambda K H
0.317 0.135 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 174138591420
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40