BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1282c Length=291 Score E Sequences producing significant alignments: (Bits) Value gi|15608422|ref|NP_215798.1| oligopeptide-transport integral mem... 572 2e-161 gi|339294264|gb|AEJ46375.1| oligopeptide-transport integral memb... 551 5e-155 gi|118619201|ref|YP_907533.1| oligopeptide-transport integral me... 523 2e-146 gi|240173020|ref|ZP_04751678.1| oligopeptide-transport integral ... 507 9e-142 gi|296170189|ref|ZP_06851783.1| oligopeptide ABC superfamily ATP... 506 2e-141 gi|254821263|ref|ZP_05226264.1| hypothetical protein MintA_15097... 502 3e-140 gi|342858072|ref|ZP_08714728.1| ABC transporter permease [Mycoba... 501 5e-140 gi|41408587|ref|NP_961423.1| hypothetical protein MAP2489 [Mycob... 499 1e-139 gi|336458533|gb|EGO37503.1| ABC-type dipeptide/oligopeptide/nick... 499 2e-139 gi|118463250|ref|YP_880674.1| ABC transporter permease [Mycobact... 486 2e-135 gi|15827556|ref|NP_301819.1| binding-protein dependent transport... 477 7e-133 gi|333989916|ref|YP_004522530.1| peptide ABC transporter transme... 476 2e-132 gi|120405384|ref|YP_955213.1| binding-protein-dependent transpor... 449 3e-124 gi|118473585|ref|YP_889247.1| ABC transporter permease [Mycobact... 444 1e-122 gi|108800893|ref|YP_641090.1| binding-protein-dependent transpor... 436 3e-120 gi|145222848|ref|YP_001133526.1| binding-protein-dependent trans... 393 1e-107 gi|226364861|ref|YP_002782643.1| ABC transporter permease protei... 380 1e-103 gi|111022317|ref|YP_705289.1| peptide ABC transporter permease [... 373 2e-101 gi|54022132|ref|YP_116374.1| putative ABC transporter permease [... 346 2e-93 gi|29829588|ref|NP_824222.1| peptide ABC transporter permease [S... 320 2e-85 gi|317506569|ref|ZP_07964362.1| inner membrane transporter [Segn... 305 6e-81 gi|256394727|ref|YP_003116291.1| binding-protein-dependent trans... 305 6e-81 gi|227497853|ref|ZP_03928038.1| peptide ABC superfamily ATP bind... 303 2e-80 gi|296393468|ref|YP_003658352.1| binding-protein-dependent trans... 300 2e-79 gi|318061432|ref|ZP_07980153.1| peptide ABC transporter permease... 299 4e-79 gi|340360822|ref|ZP_08683287.1| oligopeptide ABC superfamily ATP... 298 6e-79 gi|302525740|ref|ZP_07278082.1| nickel ABC transporter, permease... 298 7e-79 gi|302520634|ref|ZP_07272976.1| nickel ABC transporter, permease... 298 8e-79 gi|311894069|dbj|BAJ26477.1| putative peptide ABC transporter pe... 295 4e-78 gi|326772212|ref|ZP_08231497.1| peptide ABC transporter, permeas... 295 4e-78 gi|343523852|ref|ZP_08760813.1| ABC transporter, permease protei... 295 5e-78 gi|325067463|ref|ZP_08126136.1| binding-protein-dependent transp... 293 1e-77 gi|320531724|ref|ZP_08032660.1| putative oligopeptide ABC transp... 293 2e-77 gi|271963487|ref|YP_003337683.1| oligopeptide ABC transporter pe... 291 1e-76 gi|297198904|ref|ZP_06916301.1| nickel ABC transporter, permease... 286 2e-75 gi|271968342|ref|YP_003342538.1| binding-protein-dependent trans... 285 4e-75 gi|256397416|ref|YP_003118980.1| binding-protein-dependent trans... 282 3e-74 gi|227494778|ref|ZP_03925094.1| oligopeptide ABC superfamily ATP... 281 7e-74 gi|297559513|ref|YP_003678487.1| binding-protein-dependent trans... 276 3e-72 gi|269127484|ref|YP_003300854.1| binding-protein-dependent trans... 272 6e-71 gi|333918766|ref|YP_004492347.1| binding-protein-dependent trans... 265 4e-69 gi|282855187|ref|ZP_06264519.1| putative oligopeptide ABC transp... 263 2e-68 gi|315103988|gb|EFT75964.1| putative oligopeptide ABC transporte... 263 3e-68 gi|315093695|gb|EFT65671.1| ABC transporter, permease protein [P... 262 5e-68 gi|283783689|ref|YP_003374443.1| ABC transporter, permease prote... 257 1e-66 gi|72162691|ref|YP_290348.1| peptide ABC transporter permease [T... 256 2e-66 gi|298252445|ref|ZP_06976240.1| ABC-type dipeptide/oligopeptide/... 256 3e-66 gi|310287155|ref|YP_003938413.1| peptide/nickel ABC transporter ... 254 9e-66 gi|297571990|ref|YP_003697764.1| binding-protein-dependent trans... 253 3e-65 gi|262200630|ref|YP_003271838.1| binding-protein-dependent trans... 249 3e-64 >gi|15608422|ref|NP_215798.1| oligopeptide-transport integral membrane protein ABC transporter OppC [Mycobacterium tuberculosis H37Rv] gi|15840729|ref|NP_335766.1| peptide ABC transporter, permease protein [Mycobacterium tuberculosis CDC1551] gi|31792474|ref|NP_854967.1| oligopeptide-transport integral membrane protein ABC transporter OppC [Mycobacterium bovis AF2122/97] 80 more sequence titles Length=291 Score = 572 bits (1474), Expect = 2e-161, Method: Compositional matrix adjust. Identities = 291/291 (100%), Positives = 291/291 (100%), Gaps = 0/291 (0%) Query 1 MTEFASRRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGT 60 MTEFASRRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGT Sbjct 1 MTEFASRRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGT 60 Query 61 KHWLGTNALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWV 120 KHWLGTNALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWV Sbjct 61 KHWLGTNALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWV 120 Query 121 VDLLLVVPSFILIAIVTPRTKNSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRA 180 VDLLLVVPSFILIAIVTPRTKNSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRA Sbjct 121 VDLLLVVPSFILIAIVTPRTKNSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRA 180 Query 181 ARYMGVSSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLI 240 ARYMGVSSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLI Sbjct 181 ARYMGVSSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLI 240 Query 241 ADGTASATAFPWVFLFPASILVLILVCANLTGDGLRDALDPASRSLRRGVR 291 ADGTASATAFPWVFLFPASILVLILVCANLTGDGLRDALDPASRSLRRGVR Sbjct 241 ADGTASATAFPWVFLFPASILVLILVCANLTGDGLRDALDPASRSLRRGVR 291 >gi|339294264|gb|AEJ46375.1| oligopeptide-transport integral membrane protein ABC transporter OppC [Mycobacterium tuberculosis CCDC5079] gi|339297904|gb|AEJ50014.1| oligopeptide-transport integral membrane protein ABC transporter OppC [Mycobacterium tuberculosis CCDC5180] Length=281 Score = 551 bits (1419), Expect = 5e-155, Method: Compositional matrix adjust. Identities = 280/281 (99%), Positives = 281/281 (100%), Gaps = 0/281 (0%) Query 11 VVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTKHWLGTNALG 70 +VRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTKHWLGTNALG Sbjct 1 MVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTKHWLGTNALG 60 Query 71 QDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVVDLLLVVPSF 130 QDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVVDLLLVVPSF Sbjct 61 QDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVVDLLLVVPSF 120 Query 131 ILIAIVTPRTKNSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAARYMGVSSRR 190 ILIAIVTPRTKNSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAARYMGVSSRR Sbjct 121 ILIAIVTPRTKNSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAARYMGVSSRR 180 Query 191 IIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIADGTASATAF 250 IIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIADGTASATAF Sbjct 181 IIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIADGTASATAF 240 Query 251 PWVFLFPASILVLILVCANLTGDGLRDALDPASRSLRRGVR 291 PWVFLFPASILVLILVCANLTGDGLRDALDPASRSLRRGVR Sbjct 241 PWVFLFPASILVLILVCANLTGDGLRDALDPASRSLRRGVR 281 >gi|118619201|ref|YP_907533.1| oligopeptide-transport integral membrane protein ABC transporter OppC [Mycobacterium ulcerans Agy99] gi|183984108|ref|YP_001852399.1| oligopeptide-transport integral membrane protein ABC transporter OppC [Mycobacterium marinum M] gi|118571311|gb|ABL06062.1| oligopeptide-transport integral membrane protein ABC transporter OppC [Mycobacterium ulcerans Agy99] gi|183177434|gb|ACC42544.1| oligopeptide-transport integral membrane protein ABC transporter OppC [Mycobacterium marinum M] Length=297 Score = 523 bits (1346), Expect = 2e-146, Method: Compositional matrix adjust. Identities = 260/289 (90%), Positives = 274/289 (95%), Gaps = 0/289 (0%) Query 3 EFASRRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTKH 62 EF SRRTLV+RRFLRNRAAVASLA L++LFV YALP +LPYSY+DLDF+ALLQPP T+H Sbjct 9 EFTSRRTLVLRRFLRNRAAVASLAVLVVLFVGCYALPSVLPYSYEDLDFDALLQPPSTRH 68 Query 63 WLGTNALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVVD 122 WLGTNALGQDLLAQTLRGMQKSMLIGV VAVISTGIAATVGA+SGYFGGWRDR LMW+VD Sbjct 69 WLGTNALGQDLLAQTLRGMQKSMLIGVFVAVISTGIAATVGAVSGYFGGWRDRALMWLVD 128 Query 123 LLLVVPSFILIAIVTPRTKNSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAAR 182 LLLVVPSFILIAIVTPRTKNS N+MFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAAR Sbjct 129 LLLVVPSFILIAIVTPRTKNSTNMMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAAR 188 Query 183 YMGVSSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIAD 242 YMGVSSRRII GHV+PNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIAD Sbjct 189 YMGVSSRRIITGHVIPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIAD 248 Query 243 GTASATAFPWVFLFPASILVLILVCANLTGDGLRDALDPASRSLRRGVR 291 GT SAT FPWVFLFPA +LVLILVCANLTGDGLRDALDPAS++LR G R Sbjct 249 GTQSATTFPWVFLFPAGVLVLILVCANLTGDGLRDALDPASKTLRSGDR 297 >gi|240173020|ref|ZP_04751678.1| oligopeptide-transport integral membrane protein ABC transporter OppC [Mycobacterium kansasii ATCC 12478] Length=299 Score = 507 bits (1305), Expect = 9e-142, Method: Compositional matrix adjust. Identities = 260/289 (90%), Positives = 272/289 (95%), Gaps = 0/289 (0%) Query 3 EFASRRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTKH 62 EF SRR LV+RRFLRNR+AV SLA L+LLFV Y LP LLPYSYDDLDF+ALLQPP T+H Sbjct 11 EFTSRRALVLRRFLRNRSAVVSLAVLVLLFVGCYTLPALLPYSYDDLDFDALLQPPNTRH 70 Query 63 WLGTNALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVVD 122 WLGTNALGQDLLAQ LRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDR LMWVVD Sbjct 71 WLGTNALGQDLLAQILRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRALMWVVD 130 Query 123 LLLVVPSFILIAIVTPRTKNSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAAR 182 LLLVVPSFILIAIVTPRTKNSANIMFLVLLLAGFGWM+SSRMVRGMTMSLREREFIRAAR Sbjct 131 LLLVVPSFILIAIVTPRTKNSANIMFLVLLLAGFGWMVSSRMVRGMTMSLREREFIRAAR 190 Query 183 YMGVSSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIAD 242 +MGVSSRRII GHV+PNVASILIIDAALNVA+AILAETGLSFLGFGIQPPDVSLGTLIAD Sbjct 191 FMGVSSRRIITGHVIPNVASILIIDAALNVASAILAETGLSFLGFGIQPPDVSLGTLIAD 250 Query 243 GTASATAFPWVFLFPASILVLILVCANLTGDGLRDALDPASRSLRRGVR 291 GT SAT +PWVFLFPA +LVLILVCANLTGDGLRDALDP SR+LRRG R Sbjct 251 GTQSATTYPWVFLFPAGVLVLILVCANLTGDGLRDALDPGSRTLRRGER 299 >gi|296170189|ref|ZP_06851783.1| oligopeptide ABC superfamily ATP binding cassette transporter, permease protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895141|gb|EFG74858.1| oligopeptide ABC superfamily ATP binding cassette transporter, permease protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=308 Score = 506 bits (1303), Expect = 2e-141, Method: Compositional matrix adjust. Identities = 253/290 (88%), Positives = 269/290 (93%), Gaps = 0/290 (0%) Query 2 TEFASRRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTK 61 +EF SRRTLV+RRF+RNR AVASL L+LLFV YALP LPYSYDDLDF+ALLQPP + Sbjct 19 SEFTSRRTLVLRRFVRNRLAVASLTLLVLLFVGCYALPAALPYSYDDLDFDALLQPPNAR 78 Query 62 HWLGTNALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVV 121 HWLGTNALGQDLLAQ LRGMQKSMLIGVCVAVISTGIAATVG+I+GYFGGWRDR LMW+V Sbjct 79 HWLGTNALGQDLLAQILRGMQKSMLIGVCVAVISTGIAATVGSIAGYFGGWRDRALMWLV 138 Query 122 DLLLVVPSFILIAIVTPRTKNSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAA 181 DLLLVVPSFILIAIVTPRTK+SANI+ LVLLLAGFGWMISSRMVRGMTMSLREREFIRAA Sbjct 139 DLLLVVPSFILIAIVTPRTKSSANILMLVLLLAGFGWMISSRMVRGMTMSLREREFIRAA 198 Query 182 RYMGVSSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIA 241 RYMGVSSRRII+GHVVPNVASILIIDAALNVA+AILAETGLSFLGFGIQPPDVSLGTLIA Sbjct 199 RYMGVSSRRIILGHVVPNVASILIIDAALNVASAILAETGLSFLGFGIQPPDVSLGTLIA 258 Query 242 DGTASATAFPWVFLFPASILVLILVCANLTGDGLRDALDPASRSLRRGVR 291 +GT SAT FPWVFLFPA +LVLILVCAN+TGDGLRDALDP S LR G R Sbjct 259 NGTQSATTFPWVFLFPAGVLVLILVCANVTGDGLRDALDPGSGMLRAGAR 308 >gi|254821263|ref|ZP_05226264.1| hypothetical protein MintA_15097 [Mycobacterium intracellulare ATCC 13950] Length=291 Score = 502 bits (1292), Expect = 3e-140, Method: Compositional matrix adjust. Identities = 251/291 (87%), Positives = 268/291 (93%), Gaps = 0/291 (0%) Query 1 MTEFASRRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGT 60 M +F SRRTLV+RRF RNR AVASL L+LLFV Y+LP +LPYSY+DLDF ALLQPP Sbjct 1 MADFTSRRTLVLRRFARNRFAVASLILLVLLFVGCYSLPAVLPYSYEDLDFTALLQPPSA 60 Query 61 KHWLGTNALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWV 120 +HWLGTNALGQDLLAQ LRGMQKSMLIGVCVAVISTGIAATVG++SGYFGGWRDR LMW+ Sbjct 61 RHWLGTNALGQDLLAQILRGMQKSMLIGVCVAVISTGIAATVGSVSGYFGGWRDRVLMWL 120 Query 121 VDLLLVVPSFILIAIVTPRTKNSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRA 180 VDLLLVVPSFILIAIVTPRTK+SANI+ LVLLLAGFGWM+SSRMVRGMTMSLREREFIRA Sbjct 121 VDLLLVVPSFILIAIVTPRTKDSANIVMLVLLLAGFGWMVSSRMVRGMTMSLREREFIRA 180 Query 181 ARYMGVSSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLI 240 ARYMGVSSRRIIVGHVVPNVASILIIDAALNVA+AILAETGLSFLGFGIQPPDVSLGTLI Sbjct 181 ARYMGVSSRRIIVGHVVPNVASILIIDAALNVASAILAETGLSFLGFGIQPPDVSLGTLI 240 Query 241 ADGTASATAFPWVFLFPASILVLILVCANLTGDGLRDALDPASRSLRRGVR 291 A+GT SAT FPWVFLFPA +LVLILVCANLTGDGLRDALDP S +R G R Sbjct 241 ANGTLSATTFPWVFLFPAGVLVLILVCANLTGDGLRDALDPGSTPVRGGAR 291 >gi|342858072|ref|ZP_08714728.1| ABC transporter permease [Mycobacterium colombiense CECT 3035] gi|342135405|gb|EGT88571.1| ABC transporter permease [Mycobacterium colombiense CECT 3035] Length=308 Score = 501 bits (1290), Expect = 5e-140, Method: Compositional matrix adjust. Identities = 252/291 (87%), Positives = 266/291 (92%), Gaps = 0/291 (0%) Query 1 MTEFASRRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGT 60 + +F SRRTLV+RRF RNR AVASL L+LLFV YALP +LPYSYDDLDF ALLQPP Sbjct 18 VADFTSRRTLVLRRFARNRFAVASLTVLVLLFVGCYALPAVLPYSYDDLDFTALLQPPNG 77 Query 61 KHWLGTNALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWV 120 +HWLGTNALGQDLLAQ LRGMQKSMLIGVCVAVISTGIAATVG+I+GYFGGWRDR LMWV Sbjct 78 RHWLGTNALGQDLLAQILRGMQKSMLIGVCVAVISTGIAATVGSIAGYFGGWRDRALMWV 137 Query 121 VDLLLVVPSFILIAIVTPRTKNSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRA 180 VDLLLVVPSFILIAIVTPR KNSAN++ LVLLLAGFGWM+SSRMVRGMTMSLREREFIRA Sbjct 138 VDLLLVVPSFILIAIVTPRIKNSANVLMLVLLLAGFGWMVSSRMVRGMTMSLREREFIRA 197 Query 181 ARYMGVSSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLI 240 ARYMGVSSRRIIVGHVVPNVASILIIDAALNVA+AILAETGLSFLGFGIQPPDVSLGTLI Sbjct 198 ARYMGVSSRRIIVGHVVPNVASILIIDAALNVASAILAETGLSFLGFGIQPPDVSLGTLI 257 Query 241 ADGTASATAFPWVFLFPASILVLILVCANLTGDGLRDALDPASRSLRRGVR 291 A+GT SAT FPWVFLFPA +LVLILVCANLTGDGLRDALDP S L G R Sbjct 258 ANGTQSATTFPWVFLFPAGVLVLILVCANLTGDGLRDALDPGSAVLGGGGR 308 >gi|41408587|ref|NP_961423.1| hypothetical protein MAP2489 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396945|gb|AAS04806.1| OppC [Mycobacterium avium subsp. paratuberculosis K-10] Length=291 Score = 499 bits (1286), Expect = 1e-139, Method: Compositional matrix adjust. Identities = 252/291 (87%), Positives = 266/291 (92%), Gaps = 0/291 (0%) Query 1 MTEFASRRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGT 60 M FASRRTLV+RRF RNR AVASL L+LLFV Y LP +LPYSY DLDF+ALLQPP Sbjct 1 MAGFASRRTLVLRRFGRNRLAVASLTLLVLLFVGCYTLPAVLPYSYQDLDFDALLQPPNA 60 Query 61 KHWLGTNALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWV 120 +HWLGTNALGQDLLAQ LRGMQKSMLIGVCVAVISTGIAATVG+I+GYFGGWRDR LMW+ Sbjct 61 RHWLGTNALGQDLLAQILRGMQKSMLIGVCVAVISTGIAATVGSIAGYFGGWRDRVLMWL 120 Query 121 VDLLLVVPSFILIAIVTPRTKNSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRA 180 VDLLLVVPSFILIAIVTPRTKNSANI+ LVLLLAGFGWM+SSRMVRGMTMSLREREFIRA Sbjct 121 VDLLLVVPSFILIAIVTPRTKNSANILMLVLLLAGFGWMVSSRMVRGMTMSLREREFIRA 180 Query 181 ARYMGVSSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLI 240 ARYMGVSSRRIIVGHVVPNVASILIIDAALNVA+AILAETGLSFLGFG+QPPDVSLGTLI Sbjct 181 ARYMGVSSRRIIVGHVVPNVASILIIDAALNVASAILAETGLSFLGFGVQPPDVSLGTLI 240 Query 241 ADGTASATAFPWVFLFPASILVLILVCANLTGDGLRDALDPASRSLRRGVR 291 A+GT SAT FPWVFLFPA +LVLILVCANLTGDGLRDALDP S R G R Sbjct 241 ANGTQSATTFPWVFLFPAGVLVLILVCANLTGDGLRDALDPGSGPARGGRR 291 >gi|336458533|gb|EGO37503.1| ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Mycobacterium avium subsp. paratuberculosis S397] Length=308 Score = 499 bits (1284), Expect = 2e-139, Method: Compositional matrix adjust. Identities = 251/288 (88%), Positives = 265/288 (93%), Gaps = 0/288 (0%) Query 4 FASRRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTKHW 63 FASRRTLV+RRF RNR AVASL L+LLFV Y LP +LPYSY DLDF+ALLQPP +HW Sbjct 21 FASRRTLVLRRFGRNRLAVASLTLLVLLFVGCYTLPAVLPYSYQDLDFDALLQPPNARHW 80 Query 64 LGTNALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVVDL 123 LGTNALGQDLLAQ LRGMQKSMLIGVCVAVISTGIAATVG+I+GYFGGWRDR LMW+VDL Sbjct 81 LGTNALGQDLLAQILRGMQKSMLIGVCVAVISTGIAATVGSIAGYFGGWRDRVLMWLVDL 140 Query 124 LLVVPSFILIAIVTPRTKNSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAARY 183 LLVVPSFILIAIVTPRTKNSANI+ LVLLLAGFGWM+SSRMVRGMTMSLREREFIRAARY Sbjct 141 LLVVPSFILIAIVTPRTKNSANILMLVLLLAGFGWMVSSRMVRGMTMSLREREFIRAARY 200 Query 184 MGVSSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIADG 243 MGVSSRRIIVGHVVPNVASILIIDAALNVA+AILAETGLSFLGFG+QPPDVSLGTLIA+G Sbjct 201 MGVSSRRIIVGHVVPNVASILIIDAALNVASAILAETGLSFLGFGVQPPDVSLGTLIANG 260 Query 244 TASATAFPWVFLFPASILVLILVCANLTGDGLRDALDPASRSLRRGVR 291 T SAT FPWVFLFPA +LVLILVCANLTGDGLRDALDP S R G R Sbjct 261 TQSATTFPWVFLFPAGVLVLILVCANLTGDGLRDALDPGSGPARGGRR 308 >gi|118463250|ref|YP_880674.1| ABC transporter permease [Mycobacterium avium 104] gi|254774309|ref|ZP_05215825.1| ABC transporter, permease protein OppC [Mycobacterium avium subsp. avium ATCC 25291] gi|118164537|gb|ABK65434.1| ABC transporter, permease protein OppC [Mycobacterium avium 104] Length=308 Score = 486 bits (1251), Expect = 2e-135, Method: Compositional matrix adjust. Identities = 250/288 (87%), Positives = 264/288 (92%), Gaps = 0/288 (0%) Query 4 FASRRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTKHW 63 FASRRTLV+RRF RNR AV SL L+LLFV Y LP +LPYSY DLDF+ALLQPP +HW Sbjct 21 FASRRTLVLRRFGRNRLAVTSLTLLVLLFVGCYTLPAVLPYSYQDLDFDALLQPPNARHW 80 Query 64 LGTNALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVVDL 123 LGTNALGQDLLAQ LRGMQKSMLIGVCVAVISTGIAATVG+I+GYFGGWRDR LMW+VDL Sbjct 81 LGTNALGQDLLAQILRGMQKSMLIGVCVAVISTGIAATVGSIAGYFGGWRDRVLMWLVDL 140 Query 124 LLVVPSFILIAIVTPRTKNSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAARY 183 LLVVPSFILIAIVTPRTKNSANI+ LVLLLAGFGWM+SSRMVRGMTMSLREREFIRAARY Sbjct 141 LLVVPSFILIAIVTPRTKNSANILMLVLLLAGFGWMVSSRMVRGMTMSLREREFIRAARY 200 Query 184 MGVSSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIADG 243 MGVSSRRIIVGHVVPNVASILIIDAALNVA+AILAETGLSFLGFG+QPPDVSLGTLIA+G Sbjct 201 MGVSSRRIIVGHVVPNVASILIIDAALNVASAILAETGLSFLGFGVQPPDVSLGTLIANG 260 Query 244 TASATAFPWVFLFPASILVLILVCANLTGDGLRDALDPASRSLRRGVR 291 T SAT FPWVFLFPA +LVLILVCANLTGDGLRDALDP S R G R Sbjct 261 TQSATTFPWVFLFPAGVLVLILVCANLTGDGLRDALDPGSGPARGGRR 308 >gi|15827556|ref|NP_301819.1| binding-protein dependent transport protein [Mycobacterium leprae TN] gi|221230033|ref|YP_002503449.1| putative binding-protein dependent transport protein [Mycobacterium leprae Br4923] gi|13093106|emb|CAC31504.1| probable binding-protein dependent transport protein [Mycobacterium leprae] gi|219933140|emb|CAR71218.1| probable binding-protein dependent transport protein [Mycobacterium leprae Br4923] Length=299 Score = 477 bits (1228), Expect = 7e-133, Method: Compositional matrix adjust. Identities = 237/287 (83%), Positives = 260/287 (91%), Gaps = 0/287 (0%) Query 2 TEFASRRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTK 61 T FASR+TLV+RRF NR A SL L+LLFV+ Y LP LLPYSYDDLDFNALLQPP T+ Sbjct 13 TNFASRKTLVLRRFAHNRTASVSLMLLVLLFVACYLLPSLLPYSYDDLDFNALLQPPNTR 72 Query 62 HWLGTNALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVV 121 HWLGTNALGQDLLAQTLRGMQKSMLIGVCVA+IST IAATVG+I+GYFG WRDR LMWVV Sbjct 73 HWLGTNALGQDLLAQTLRGMQKSMLIGVCVALISTSIAATVGSIAGYFGRWRDRVLMWVV 132 Query 122 DLLLVVPSFILIAIVTPRTKNSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAA 181 DLLLVVPSF+LIAI++P+TK+S NIM LVLLLAGFGWM+SSRMVRGMTMSLR+ EFIRA Sbjct 133 DLLLVVPSFVLIAIMSPQTKSSDNIMLLVLLLAGFGWMVSSRMVRGMTMSLRKSEFIRAG 192 Query 182 RYMGVSSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIA 241 +YMGVSSRR+IVGHVVPNVASILIIDA LNV +AILAETGLSFLGFGI+PPDVSLGTLIA Sbjct 193 KYMGVSSRRMIVGHVVPNVASILIIDATLNVGSAILAETGLSFLGFGIKPPDVSLGTLIA 252 Query 242 DGTASATAFPWVFLFPASILVLILVCANLTGDGLRDALDPASRSLRR 288 +GT SAT FPWVFLFPA +LV+ILVCANLTGDGLRDA DP S+ LRR Sbjct 253 NGTQSATTFPWVFLFPAGVLVVILVCANLTGDGLRDAFDPVSKHLRR 299 >gi|333989916|ref|YP_004522530.1| peptide ABC transporter transmembrane protein [Mycobacterium sp. JDM601] gi|333485884|gb|AEF35276.1| oligopeptide-transport integral membrane protein ABC transporter OppC [Mycobacterium sp. JDM601] Length=294 Score = 476 bits (1224), Expect = 2e-132, Method: Compositional matrix adjust. Identities = 236/284 (84%), Positives = 256/284 (91%), Gaps = 0/284 (0%) Query 4 FASRRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTKHW 63 FASRRTLV+RRFLR+R AV +LA L ++FV Y LP LLPYSY DLD++ALL PPG KHW Sbjct 8 FASRRTLVLRRFLRSRTAVGALALLAVMFVGCYTLPSLLPYSYTDLDYDALLVPPGAKHW 67 Query 64 LGTNALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVVDL 123 LGTNALGQDLLAQ LRGMQKSMLIGVCVA+IST IAATVGAI+GYFGGWRDR LMW+VDL Sbjct 68 LGTNALGQDLLAQILRGMQKSMLIGVCVALISTVIAATVGAIAGYFGGWRDRMLMWLVDL 127 Query 124 LLVVPSFILIAIVTPRTKNSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAARY 183 LLVVP+FILIAI+TPRTKNS NI LVLLLAGF WMIS+RMVRG+TMSLREREFIRAARY Sbjct 128 LLVVPAFILIAIITPRTKNSGNIFMLVLLLAGFSWMISARMVRGLTMSLREREFIRAARY 187 Query 184 MGVSSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIADG 243 MGVSSRRII+ H+VPNVASILIID ALNVA AILAETGLS+LGFGIQPPDVSLGTLIADG Sbjct 188 MGVSSRRIIIDHIVPNVASILIIDTALNVAVAILAETGLSYLGFGIQPPDVSLGTLIADG 247 Query 244 TASATAFPWVFLFPASILVLILVCANLTGDGLRDALDPASRSLR 287 TASA FPWVFLFPA +L+ ILVCANL GDGLRDALDP + SLR Sbjct 248 TASAITFPWVFLFPAGVLITILVCANLAGDGLRDALDPDAASLR 291 >gi|120405384|ref|YP_955213.1| binding-protein-dependent transport systems inner membrane component [Mycobacterium vanbaalenii PYR-1] gi|119958202|gb|ABM15207.1| binding-protein-dependent transport systems inner membrane component [Mycobacterium vanbaalenii PYR-1] Length=299 Score = 449 bits (1154), Expect = 3e-124, Method: Compositional matrix adjust. Identities = 221/286 (78%), Positives = 244/286 (86%), Gaps = 0/286 (0%) Query 3 EFASRRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTKH 62 EF SRRTLV RRFLRNRAAV SL L LF+ YALPPLLPYS+ DLD+ AL QPP T H Sbjct 8 EFVSRRTLVWRRFLRNRAAVLSLFVLAALFIGCYALPPLLPYSHTDLDYYALQQPPSTTH 67 Query 63 WLGTNALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVVD 122 W GTNALGQDLLAQTLRGMQKSMLIGVCVA +ST IAATVGA++GYFG WR LMW+VD Sbjct 68 WFGTNALGQDLLAQTLRGMQKSMLIGVCVAFLSTAIAATVGAVAGYFGAWRSAALMWIVD 127 Query 123 LLLVVPSFILIAIVTPRTKNSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAAR 182 LLLVVPSF+LIAIVTPRT+ S I++L+LLL+ F WMIS+R+VRGMTMSLREREF+ AAR Sbjct 128 LLLVVPSFLLIAIVTPRTRESGTILWLILLLSAFSWMISARIVRGMTMSLREREFVTAAR 187 Query 183 YMGVSSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIAD 242 YMGVS+RRIIV H++PNVASILIID ALNV A+LAET LSFLGFG+QPPDVSLGTLIAD Sbjct 188 YMGVSNRRIIVRHILPNVASILIIDTALNVGLAVLAETSLSFLGFGVQPPDVSLGTLIAD 247 Query 243 GTASATAFPWVFLFPASILVLILVCANLTGDGLRDALDPASRSLRR 288 GT S T FPWVFLFPA +LVLI+ CANL GDGLRDALDP R RR Sbjct 248 GTRSVTTFPWVFLFPAGVLVLIVFCANLVGDGLRDALDPGVRPARR 293 >gi|118473585|ref|YP_889247.1| ABC transporter permease [Mycobacterium smegmatis str. MC2 155] gi|118174872|gb|ABK75768.1| ABC transporter, permease protein OppC [Mycobacterium smegmatis str. MC2 155] Length=310 Score = 444 bits (1141), Expect = 1e-122, Method: Compositional matrix adjust. Identities = 218/284 (77%), Positives = 246/284 (87%), Gaps = 0/284 (0%) Query 3 EFASRRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTKH 62 EFA+RRTLV RRF+RN+ AV SLA L+L+FV YALPPLLPYSY DLD+ AL QPP +H Sbjct 17 EFATRRTLVFRRFVRNKPAVVSLAVLVLMFVGCYALPPLLPYSYTDLDYYALQQPPSPEH 76 Query 63 WLGTNALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVVD 122 W GT ALGQD+LAQ LRGMQKSMLIGVCVA IST IAATVG+I+GYFGGWRDRTLMW+VD Sbjct 77 WFGTTALGQDILAQVLRGMQKSMLIGVCVAFISTIIAATVGSIAGYFGGWRDRTLMWIVD 136 Query 123 LLLVVPSFILIAIVTPRTKNSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAAR 182 +LLVVPSFILIAIVTPR ++ + +L++LL+ F WMISSR+VRGMTMSLR REF+ AAR Sbjct 137 VLLVVPSFILIAIVTPRLNDADRVFWLIVLLSLFSWMISSRIVRGMTMSLRSREFVVAAR 196 Query 183 YMGVSSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIAD 242 YMGV S RIIV H++PNVAS+LIID ALNV AILAETGLSFLGFGIQPPDVSLGTLIAD Sbjct 197 YMGVRSGRIIVRHILPNVASLLIIDTALNVGTAILAETGLSFLGFGIQPPDVSLGTLIAD 256 Query 243 GTASATAFPWVFLFPASILVLILVCANLTGDGLRDALDPASRSL 286 GT SAT FPWVFLFPA +LVLI++C+NL GDGLRDALDP S L Sbjct 257 GTGSATTFPWVFLFPAGVLVLIILCSNLVGDGLRDALDPGSGGL 300 >gi|108800893|ref|YP_641090.1| binding-protein-dependent transport systems inner membrane component [Mycobacterium sp. MCS] gi|119870033|ref|YP_939985.1| binding-protein-dependent transport systems inner membrane component [Mycobacterium sp. KMS] gi|126436519|ref|YP_001072210.1| binding-protein-dependent transport systems inner membrane component [Mycobacterium sp. JLS] gi|108771312|gb|ABG10034.1| binding-protein-dependent transport systems inner membrane component [Mycobacterium sp. MCS] gi|119696122|gb|ABL93195.1| binding-protein-dependent transport systems inner membrane component [Mycobacterium sp. KMS] gi|126236319|gb|ABN99719.1| binding-protein-dependent transport systems inner membrane component [Mycobacterium sp. JLS] Length=307 Score = 436 bits (1120), Expect = 3e-120, Method: Compositional matrix adjust. Identities = 224/288 (78%), Positives = 248/288 (87%), Gaps = 0/288 (0%) Query 2 TEFASRRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTK 61 + FASRRTLV RRFLRN+ AV +LA L+L+F Y LPPLLPYSY DLD+ AL QPP T+ Sbjct 17 SRFASRRTLVTRRFLRNKPAVGALALLVLMFAGCYLLPPLLPYSYTDLDYYALQQPPTTE 76 Query 62 HWLGTNALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVV 121 HW GTNALGQDLLAQTLRGMQKSMLIGV VA IST IAATVG+I+GYFGGWRDRTLMW+V Sbjct 77 HWFGTNALGQDLLAQTLRGMQKSMLIGVAVAFISTIIAATVGSIAGYFGGWRDRTLMWLV 136 Query 122 DLLLVVPSFILIAIVTPRTKNSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAA 181 DLLLVVPSFILIAIVTPRTK S I++L+LLLA F WMISSR+VRG+TMSLR+REF+ AA Sbjct 137 DLLLVVPSFILIAIVTPRTKESGTILWLILLLAAFSWMISSRIVRGLTMSLRDREFVVAA 196 Query 182 RYMGVSSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIA 241 RYMGV RIIV H+VPNVASILIID ALNV A+LAETGLSFLGFG+Q PDVSLGTLIA Sbjct 197 RYMGVPHWRIIVRHIVPNVASILIIDTALNVGLAVLAETGLSFLGFGVQRPDVSLGTLIA 256 Query 242 DGTASATAFPWVFLFPASILVLILVCANLTGDGLRDALDPASRSLRRG 289 DGT S T FPWVFLFPA +LVLI++CANL GDGLRDALDP R R+G Sbjct 257 DGTGSVTTFPWVFLFPAGVLVLIILCANLIGDGLRDALDPGIRPARKG 304 >gi|145222848|ref|YP_001133526.1| binding-protein-dependent transport systems inner membrane component [Mycobacterium gilvum PYR-GCK] gi|315443315|ref|YP_004076194.1| ABC-type dipeptide/oligopeptide/nickel transport system, permease [Mycobacterium sp. Spyr1] gi|145215334|gb|ABP44738.1| binding-protein-dependent transport systems inner membrane component [Mycobacterium gilvum PYR-GCK] gi|315261618|gb|ADT98359.1| ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Mycobacterium sp. Spyr1] Length=299 Score = 393 bits (1010), Expect = 1e-107, Method: Compositional matrix adjust. Identities = 210/279 (76%), Positives = 235/279 (85%), Gaps = 0/279 (0%) Query 3 EFASRRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTKH 62 F SRRTLV RRFLRNR AV SL L L +S +ALPPLLPYS+ DLD+ AL QPP T H Sbjct 7 RFVSRRTLVWRRFLRNRPAVVSLVILAALAISCWALPPLLPYSHTDLDYYALQQPPTTTH 66 Query 63 WLGTNALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVVD 122 W GTNALGQD+LAQTLRGMQKS+LIGVCVA +ST IAAT GAI+GYFG WR LMW+VD Sbjct 67 WFGTNALGQDILAQTLRGMQKSLLIGVCVAFLSTLIAATAGAIAGYFGAWRSSALMWLVD 126 Query 123 LLLVVPSFILIAIVTPRTKNSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAAR 182 LLLVVPSF+LIAIVTPRT+ S +++L+LLLA F WMIS+R+VRG+TMSLREREF+ AAR Sbjct 127 LLLVVPSFLLIAIVTPRTRESGTLIWLILLLAAFSWMISARIVRGLTMSLREREFVTAAR 186 Query 183 YMGVSSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIAD 242 YMGV + RIIV H++PNVASILIID ALNV A+LAET LSFLGFG+QPPDVSLGTLIAD Sbjct 187 YMGVRNWRIIVRHILPNVASILIIDTALNVGLAVLAETSLSFLGFGVQPPDVSLGTLIAD 246 Query 243 GTASATAFPWVFLFPASILVLILVCANLTGDGLRDALDP 281 GT S T FPWVFLFPA +LVLI CANL GDGLRDALDP Sbjct 247 GTRSVTTFPWVFLFPAGVLVLIAFCANLVGDGLRDALDP 285 >gi|226364861|ref|YP_002782643.1| ABC transporter permease protein [Rhodococcus opacus B4] gi|226243350|dbj|BAH53698.1| putative ABC transporter permease protein [Rhodococcus opacus B4] Length=306 Score = 380 bits (977), Expect = 1e-103, Method: Compositional matrix adjust. Identities = 189/288 (66%), Positives = 238/288 (83%), Gaps = 3/288 (1%) Query 7 RRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTKHWLGT 66 RRTL+ RRFLRN+ A+A + LLLLFV+++ P LLPY Y LD+ ALLQPP +H GT Sbjct 18 RRTLLFRRFLRNKPAIAGVGVLLLLFVASFVGPYLLPYDYQQLDYTALLQPPSAEHPFGT 77 Query 67 NALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVVDLLLV 126 N +GQD+LAQTLRG+QKS++IG+CVA+ ST IAA VGA++GY GGW DR +MW+VDLLLV Sbjct 78 NQIGQDVLAQTLRGLQKSLIIGICVALFSTAIAALVGALAGYVGGWPDRVIMWLVDLLLV 137 Query 127 VPSFILIAIVTPRTKNSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAARYMGV 186 VPSFI+IA+ TPR K+S++I+ L+LLLA FGWMI++RMVRGMT+SLREREF++AARYMG Sbjct 138 VPSFIIIAVFTPRLKSSSSIVLLILLLAVFGWMITARMVRGMTLSLREREFVQAARYMGA 197 Query 187 SSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIADGTAS 246 + +II H+VPN+ASILIIDA LNV AAILAETGLSFLGFG+Q PD+SLG+LIADGT S Sbjct 198 PTHKIITSHIVPNIASILIIDATLNVGAAILAETGLSFLGFGVQKPDISLGSLIADGTES 257 Query 247 ATAFPWVFLFPASILVLILVCANLTGDGLRDALDPA---SRSLRRGVR 291 A +PW+FLF +LV+ ++ ANL GDGLRDA+DP +RS +RG + Sbjct 258 ALTYPWLFLFAGGLLVITVLSANLVGDGLRDAVDPNAQRARSRKRGKK 305 >gi|111022317|ref|YP_705289.1| peptide ABC transporter permease [Rhodococcus jostii RHA1] gi|110821847|gb|ABG97131.1| ABC oligopeptide transporter, permease component [Rhodococcus jostii RHA1] Length=308 Score = 373 bits (958), Expect = 2e-101, Method: Compositional matrix adjust. Identities = 187/285 (66%), Positives = 234/285 (83%), Gaps = 3/285 (1%) Query 7 RRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTKHWLGT 66 RRTL+ RRFLRN+ A+A + L+LLFV ++ P LLPY Y LD+ ALLQPP +H GT Sbjct 18 RRTLLWRRFLRNKPAIAGVCVLVLLFVGSFVGPYLLPYDYQQLDYTALLQPPSAEHPFGT 77 Query 67 NALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVVDLLLV 126 N +GQD+LAQTLRG+QKS++IG+CVA+ ST IAA VGA++GY GGW DR +MW+VDLLLV Sbjct 78 NQIGQDVLAQTLRGLQKSLIIGICVAIFSTAIAALVGALAGYVGGWPDRVIMWLVDLLLV 137 Query 127 VPSFILIAIVTPRTKNSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAARYMGV 186 VPSFI+IA+ TPR K+S++I L+LLLA FGWMI++RMVRGMT+SLRERE ++AARYMG Sbjct 138 VPSFIIIAVFTPRLKSSSSIALLILLLAVFGWMITARMVRGMTLSLRERESVQAARYMGA 197 Query 187 SSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIADGTAS 246 + +II H+VPN+ASILIIDA LNV AAILAETGLSFLGFG+Q PD+SLG+LIADGT S Sbjct 198 PTHKIITSHIVPNIASILIIDATLNVGAAILAETGLSFLGFGVQKPDISLGSLIADGTES 257 Query 247 ATAFPWVFLFPASILVLILVCANLTGDGLRDALDPAS---RSLRR 288 A +PW+FLF +LV+ ++ ANL GDGLRDA+DP+S RS +R Sbjct 258 ALTYPWLFLFAGGLLVITVLSANLVGDGLRDAVDPSSTRARSRKR 302 >gi|54022132|ref|YP_116374.1| putative ABC transporter permease [Nocardia farcinica IFM 10152] gi|54013640|dbj|BAD55010.1| putative ABC transporter permease [Nocardia farcinica IFM 10152] Length=305 Score = 346 bits (888), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 172/285 (61%), Positives = 216/285 (76%), Gaps = 0/285 (0%) Query 7 RRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTKHWLGT 66 RR LV RRFLRN+ AV + LLLL ++++ LP L + Y D D AL QPP +H GT Sbjct 18 RRALVWRRFLRNKPAVVAAVVLLLLVLASFVLPHFLAFDYLDQDRTALRQPPSPRHPFGT 77 Query 67 NALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVVDLLLV 126 + +G D+LAQTLRG QKS++IG CVA+ ST IAA G+++G GGW DR +MW+VDLLLV Sbjct 78 DPIGHDVLAQTLRGAQKSLIIGFCVAIFSTAIAAIAGSVAGLLGGWTDRAIMWLVDLLLV 137 Query 127 VPSFILIAIVTPRTKNSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAARYMGV 186 VPS I+I + PR K I+ LV+LL+ FGWMIS+R+VRG+TMSLREREF+RAARYMG Sbjct 138 VPSTIVIMLFAPRVKGGGGIVLLVVLLSAFGWMISARIVRGLTMSLREREFVRAARYMGA 197 Query 187 SSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIADGTAS 246 +R +I H++PN+ASILIID L V AAI+AETGLSFLGFG+QPPDVSLGTLI DGTAS Sbjct 198 PTRTVIATHIMPNIASILIIDTTLTVGAAIMAETGLSFLGFGVQPPDVSLGTLIRDGTAS 257 Query 247 ATAFPWVFLFPASILVLILVCANLTGDGLRDALDPASRSLRRGVR 291 A +PW+FLF L+ +++CANL GDGLRDA DP ++ R+ R Sbjct 258 ALTYPWLFLFSGGFLITVVLCANLIGDGLRDAFDPGAKGARKRKR 302 >gi|29829588|ref|NP_824222.1| peptide ABC transporter permease [Streptomyces avermitilis MA-4680] gi|29606696|dbj|BAC70757.1| putative peptide ABC transporter permease protein [Streptomyces avermitilis MA-4680] Length=302 Score = 320 bits (819), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 166/283 (59%), Positives = 215/283 (76%), Gaps = 2/283 (0%) Query 7 RRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTKHWLGT 66 R T+V+RRF+RNR A+A L+LLF+ A+ P + P+SY +D+ AL P HW GT Sbjct 19 RGTVVLRRFVRNRGALAGSVVLVLLFLLAFVGPYVTPWSYSHIDYTALRSGPSADHWWGT 78 Query 67 NALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVVDLLLV 126 N +GQD+ AQT+RG+QKS+LIG+ VAV STG+AA VGA +GYFGGW DR LM+ VDLLLV Sbjct 79 NRIGQDVFAQTVRGLQKSLLIGLLVAVFSTGLAAFVGACAGYFGGWTDRALMFFVDLLLV 138 Query 127 VPSFILIAIVTPRTKNSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAARYMGV 186 PSF++IA V+PR + ++ L LLA FGWMI++R+VR MT+SL+EREF+RAAR+MGV Sbjct 139 FPSFLIIAAVSPRMPSGGWVV-LAGLLAVFGWMITARVVRSMTLSLKEREFVRAARFMGV 197 Query 187 SSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIADGTAS 246 RII HV+PNVAS LIIDA + V A+++ET LS+ GFG+Q PDVSLGTLIA GT + Sbjct 198 GPFRIIWRHVLPNVASFLIIDATIAVGGAVMSETALSYFGFGVQTPDVSLGTLIASGTGA 257 Query 247 ATAFPWVFLFPASILVLILVCANLTGDGLRDALDPASRSLRRG 289 A +PW+F + A +LV+ ++ NL GDGLRDALDP SRS R+G Sbjct 258 AVTYPWMFFYAAGLLVVFVLAVNLVGDGLRDALDPTSRS-RKG 299 >gi|317506569|ref|ZP_07964362.1| inner membrane transporter [Segniliparus rugosus ATCC BAA-974] gi|316255131|gb|EFV14408.1| inner membrane transporter [Segniliparus rugosus ATCC BAA-974] Length=294 Score = 305 bits (780), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 155/279 (56%), Positives = 210/279 (76%), Gaps = 1/279 (0%) Query 6 SRRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTKHWLG 65 +R LV RF NR AVA L L LL++ A+ +PP L + Y +D+ L+ PG +HW G Sbjct 12 TRARLVASRFAANRLAVAGLGVLALLYLVAFLVPPFLSWDYQVIDYGHALEAPGARHWFG 71 Query 66 TNALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVVDLLL 125 TN++GQD+LAQTLRG+QKS+ IG+ VAV+++ IAA VG+++GYFGGW +R + W VDLLL Sbjct 72 TNSIGQDVLAQTLRGLQKSLTIGLLVAVLASVIAAVVGSVAGYFGGWAERAISWGVDLLL 131 Query 126 VVPSFILIAIVTPRTKNSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAARYMG 185 V+PSF++IAI +P + +FLVLLLA F WM+S+R+VR +T+SL++REF+ AA+YMG Sbjct 132 VLPSFLIIAIASPLFLGR-SWLFLVLLLALFSWMLSARVVRALTISLKQREFVIAAQYMG 190 Query 186 VSSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIADGTA 245 S ++I H++PNVAS LIID L V AAIL ETGLSF GFG+QPPD+SLGTLIA+G+ Sbjct 191 ASPAKVIFSHILPNVASFLIIDTTLTVGAAILTETGLSFFGFGVQPPDISLGTLIAEGSF 250 Query 246 SATAFPWVFLFPASILVLILVCANLTGDGLRDALDPASR 284 +A FPW+F+F LV+ ++ AN GDGLRDA DP ++ Sbjct 251 AALPFPWLFVFAGGALVVTVLAANFAGDGLRDAFDPGAQ 289 >gi|256394727|ref|YP_003116291.1| binding-protein-dependent transporters inner membrane component [Catenulispora acidiphila DSM 44928] gi|256360953|gb|ACU74450.1| binding-protein-dependent transport systems inner membrane component [Catenulispora acidiphila DSM 44928] Length=319 Score = 305 bits (780), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 152/276 (56%), Positives = 200/276 (73%), Gaps = 3/276 (1%) Query 6 SRRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTKHWLG 65 +R +V+RRFLR + AV L L+L+F A+ P L ++Y D D+ L P HW G Sbjct 25 TRGRIVLRRFLRRKLAVFGLVVLVLMFALAFVGPYLNSWNYKDQDYENFLTGPSASHWFG 84 Query 66 TNALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVVDLLL 125 T +G D+ AQT+RG+QKS++IG+ AV+STG+A VGA +GYFGGW DR LMW VDLLL Sbjct 85 TTQIGSDVYAQTMRGLQKSLIIGLLAAVLSTGLAGIVGATAGYFGGWTDRVLMWFVDLLL 144 Query 126 VVPSFILIAIVTPRTKNSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAARYMG 185 V+PSF+++AI +P ++F V+LLA F WM+++RMVRG+ SLREREF+ AA MG Sbjct 145 VLPSFLILAITSPLFHGRTWLLF-VILLAAFNWMVTARMVRGLARSLREREFVTAAEVMG 203 Query 186 VSSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIADGTA 245 V RII H++PN+AS+LIIDA LNV I+AET LS+ GFG+QPPDVSLGT+IADGT Sbjct 204 VHPLRIITRHLLPNMASLLIIDATLNVGGTIIAETSLSYFGFGVQPPDVSLGTIIADGTD 263 Query 246 SATAFPWVFLFPASILVLILVCA-NLTGDGLRDALD 280 SA FPW+F +PA +L+++ V A GDGLRDA+D Sbjct 264 SALNFPWLF-YPAGVLLILTVMAVAFVGDGLRDAMD 298 >gi|227497853|ref|ZP_03928038.1| peptide ABC superfamily ATP binding cassette transporter, permease protein [Actinomyces urogenitalis DSM 15434] gi|226832737|gb|EEH65120.1| peptide ABC superfamily ATP binding cassette transporter, permease protein [Actinomyces urogenitalis DSM 15434] Length=328 Score = 303 bits (776), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 139/281 (50%), Positives = 211/281 (76%), Gaps = 1/281 (0%) Query 6 SRRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTKHWLG 65 +R + +RRFLRN++AVA +L+ + A + ++Y D+D +A L PP ++HW G Sbjct 44 TRGQITLRRFLRNKSAVAGAIGFILVALFAIFGSYIGKWAYIDVDTSAFLSPPSSEHWFG 103 Query 66 TNALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVVDLLL 125 T G+D+ A + G +KSM+IGVCVA++ T IAA +G+ + YFGGW ++ +W DLLL Sbjct 104 TTQGGRDVFAMVVEGTRKSMMIGVCVALLQTSIAALIGSSAAYFGGWWEKVALWFTDLLL 163 Query 126 VVPSFILIAIVTPRTKNS-ANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAARYM 184 VVPSF++IAI++ R + +I ++LLAGFGWM+++R+VR +T+S+++ +++ AAR+M Sbjct 164 VVPSFLIIAILSQRAGAAKGSIALFIILLAGFGWMLTARVVRSLTLSVKDLDYVNAARFM 223 Query 185 GVSSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIADGT 244 V S RII+ H++PN+AS+LI+DA +NVA A+++ET LS+ GFG+Q P+ SLGTLIA+G Sbjct 224 NVPSSRIILRHIIPNIASLLIVDATVNVAYAVISETTLSYFGFGVQAPNTSLGTLIAEGQ 283 Query 245 ASATAFPWVFLFPASILVLILVCANLTGDGLRDALDPASRS 285 SAT +PW+FL PA++LV++LVC N GDGLRDA+DP+S+S Sbjct 284 RSATTYPWIFLAPAAVLVIMLVCVNFMGDGLRDAIDPSSKS 324 >gi|296393468|ref|YP_003658352.1| binding-protein-dependent transporter inner membrane component [Segniliparus rotundus DSM 44985] gi|296180615|gb|ADG97521.1| binding-protein-dependent transport systems inner membrane component [Segniliparus rotundus DSM 44985] Length=299 Score = 300 bits (768), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 152/280 (55%), Positives = 212/280 (76%), Gaps = 1/280 (0%) Query 6 SRRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTKHWLG 65 +R L+ RFL NR AVA L L+LL+++A+ +PP L + Y +D+ L+PPG +HW G Sbjct 17 TRAALIRGRFLSNRLAVAGLGVLVLLYLAAFLIPPFLAWDYQVIDYGHALEPPGARHWFG 76 Query 66 TNALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVVDLLL 125 TN++GQD+LAQTLRG+QKS+ IG+ VAVI+ IAA VG+++GY GGW +R + W VDLLL Sbjct 77 TNSIGQDVLAQTLRGLQKSLTIGLLVAVIAAVIAAFVGSVAGYLGGWAERAISWGVDLLL 136 Query 126 VVPSFILIAIVTPRTKNSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAARYMG 185 V+P F++IA+ +P + +FLVLLLA F WM+S+R+VR +T+SL++REF+ AA+YMG Sbjct 137 VLPGFLIIAVASPLFLGH-SWLFLVLLLAMFSWMLSARVVRALTISLKQREFVIAAQYMG 195 Query 186 VSSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIADGTA 245 S +++ H++PNVAS LIID L V +AI++ETGLSF GFG+QPPD+SLGTLIA+G+ Sbjct 196 ASPAKVVFSHILPNVASFLIIDTTLTVGSAIMSETGLSFFGFGVQPPDISLGTLIAEGSF 255 Query 246 SATAFPWVFLFPASILVLILVCANLTGDGLRDALDPASRS 285 +A FPW+F F LVL ++ AN GDGLRDA DP +++ Sbjct 256 AALPFPWLFAFAGGALVLTVLAANFAGDGLRDAFDPGAQA 295 >gi|318061432|ref|ZP_07980153.1| peptide ABC transporter permease protein [Streptomyces sp. SA3_actG] gi|318078263|ref|ZP_07985595.1| peptide ABC transporter permease protein [Streptomyces sp. SA3_actF] Length=301 Score = 299 bits (765), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 164/278 (59%), Positives = 212/278 (77%), Gaps = 1/278 (0%) Query 6 SRRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTKHWLG 65 +R LV+RRFL RAA+A LA + LL V +A P L +SY D+D+ AL +PP ++HW G Sbjct 17 TRARLVLRRFLARRAALAGLAVVALLLVLGFAGPYLTHWSYTDIDYTALREPPSSRHWFG 76 Query 66 TNALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVVDLLL 125 TN +GQD+ AQT+RG+QKS+L+G+ V V+ST +AA VGA +GYFGGW DR LM++VDLLL Sbjct 77 TNRIGQDVYAQTVRGLQKSLLVGLLVGVVSTAVAALVGACAGYFGGWADRVLMFLVDLLL 136 Query 126 VVPSFILIAIVTPRTKNSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAARYMG 185 V+PSF+++AI+ PR + + + F V LLA F WM++SR+VR MT SLREREF+RAAR +G Sbjct 137 VLPSFLVLAILAPRLRGTGWLGF-VGLLALFAWMVTSRVVRAMTRSLREREFVRAARSLG 195 Query 186 VSSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIADGTA 245 V RII HV+PNVAS L+IDA L V A+++ET LS+ GFGIQ PDVSLGTLIAD T Sbjct 196 VGPARIITRHVLPNVASFLVIDATLAVGGAVMSETALSYFGFGIQAPDVSLGTLIADYTG 255 Query 246 SATAFPWVFLFPASILVLILVCANLTGDGLRDALDPAS 283 SA +PW+F FPA +LV+ ++ NL GDGLRDA DP S Sbjct 256 SAVTYPWMFFFPAGLLVVFVLAVNLVGDGLRDAFDPTS 293 >gi|340360822|ref|ZP_08683287.1| oligopeptide ABC superfamily ATP binding cassette transporter, permease protein [Actinomyces sp. oral taxon 448 str. F0400] gi|339883014|gb|EGQ72894.1| oligopeptide ABC superfamily ATP binding cassette transporter, permease protein [Actinomyces sp. oral taxon 448 str. F0400] Length=316 Score = 298 bits (763), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 140/281 (50%), Positives = 205/281 (73%), Gaps = 1/281 (0%) Query 6 SRRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTKHWLG 65 SRR L+ RRF+RN +AV + LL+ + A L + + +D LQPP +HW G Sbjct 32 SRRQLIARRFVRNPSAVIGIVGFLLVVLFALVGNRLGRWEFTQVDSGGFLQPPSAEHWFG 91 Query 66 TNALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVVDLLL 125 T G+D+ A T+ G +KS++IGVCVA++ T IAA +G+ + YFGGW +R +W+ DLLL Sbjct 92 TTQGGRDVFAMTVEGTRKSLVIGVCVALLQTAIAAVIGSTAAYFGGWWERVALWLTDLLL 151 Query 126 VVPSFILIAIVTPRT-KNSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAARYM 184 VVPSF++IAI++ R N +I ++LLAGFGWM+++R+VR +T+S++ +++ AAR+M Sbjct 152 VVPSFLIIAILSQRAGANRGSIALFIVLLAGFGWMLTARVVRSLTLSVKTLDYVAAARFM 211 Query 185 GVSSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIADGT 244 V S IIV H++PN+AS+LI+DA + +A A+++ET LS+ GFG+QPP+ SLGTLIA+G Sbjct 212 NVRSIVIIVRHILPNIASLLIVDATVGLALAVMSETTLSYFGFGVQPPNTSLGTLIAEGQ 271 Query 245 ASATAFPWVFLFPASILVLILVCANLTGDGLRDALDPASRS 285 +AT PW+FL P+ +LV++LVC N GDGLRDALDP+S+S Sbjct 272 TAATTSPWIFLAPSGVLVIMLVCVNFMGDGLRDALDPSSKS 312 >gi|302525740|ref|ZP_07278082.1| nickel ABC transporter, permease subunit NikC [Streptomyces sp. AA4] gi|302434635|gb|EFL06451.1| nickel ABC transporter, permease subunit NikC [Streptomyces sp. AA4] Length=335 Score = 298 bits (763), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 150/277 (55%), Positives = 201/277 (73%), Gaps = 1/277 (0%) Query 5 ASRRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTKHWL 64 +SR LV RRF RN+ A+A L +LL +V A+ P+ YD+LD + L PP HW Sbjct 30 SSRGKLVARRFFRNKLALAGLVVILLFYVLAFTYSWYSPWGYDELDPASTLMPPDGTHWF 89 Query 65 GTNALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVVDLL 124 GTN +G D+ AQT+RG+QKS+ IG+ A+ STG+A+ VG+ +GYFGGW DR MWVVDLL Sbjct 90 GTNQIGGDMFAQTMRGLQKSLTIGLLAALFSTGVASIVGSAAGYFGGWTDRVSMWVVDLL 149 Query 125 LVVPSFILIAIVTPRTKNSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAARYM 184 L++P F++I+I++P + + LV L+A F WMI++R+VRGMT++LREREF++AA++M Sbjct 150 LILPPFLIISILSPAFRGK-TWLILVGLIALFQWMITARIVRGMTLTLREREFVKAAKFM 208 Query 185 GVSSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIADGT 244 G S RII H+VPN+AS+LIIDA +NV AI+ ET LSF GFG+Q PDVSLGTLI+ G+ Sbjct 209 GQSPWRIIFKHIVPNMASLLIIDATINVGVAIIMETSLSFFGFGVQAPDVSLGTLISAGS 268 Query 245 ASATAFPWVFLFPASILVLILVCANLTGDGLRDALDP 281 + FPW+F PA LV ++ N GDGLRDALDP Sbjct 269 DAVRTFPWLFYIPAGFLVFTVLAVNFVGDGLRDALDP 305 >gi|302520634|ref|ZP_07272976.1| nickel ABC transporter, permease subunit NikC [Streptomyces sp. SPB78] gi|302429529|gb|EFL01345.1| nickel ABC transporter, permease subunit NikC [Streptomyces sp. SPB78] Length=301 Score = 298 bits (762), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 164/278 (59%), Positives = 211/278 (76%), Gaps = 1/278 (0%) Query 6 SRRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTKHWLG 65 +R LV+RRFL RAA+A LA + LL V +A P L +SY D+D+ AL +PP +HW G Sbjct 17 TRARLVLRRFLARRAALAGLAVVALLLVLGFAGPYLTHWSYTDIDYTALREPPSARHWFG 76 Query 66 TNALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVVDLLL 125 TN +GQD+ AQT+RG+QKS+L+G+ V V+ST +AA VGA +GYFGGW DR LM++VDLLL Sbjct 77 TNRIGQDVYAQTVRGLQKSLLVGLLVGVVSTAVAALVGACAGYFGGWADRVLMFLVDLLL 136 Query 126 VVPSFILIAIVTPRTKNSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAARYMG 185 V+PSF+++AI+ PR + + + F V LLA F WM++SR+VR MT SLREREF+RAAR +G Sbjct 137 VLPSFLVLAILAPRLRGTGWLGF-VGLLALFAWMVTSRVVRAMTRSLREREFVRAARSLG 195 Query 186 VSSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIADGTA 245 V RII HV+PNVAS L+IDA L V A+++ET LS+ GFGIQ PDVSLGTLIAD T Sbjct 196 VGPARIITRHVLPNVASFLVIDATLAVGGAVMSETALSYFGFGIQAPDVSLGTLIADYTG 255 Query 246 SATAFPWVFLFPASILVLILVCANLTGDGLRDALDPAS 283 SA +PW+F FPA +LV+ ++ NL GDGLRDA DP S Sbjct 256 SAVTYPWMFFFPAGLLVVFVLAINLVGDGLRDAFDPTS 293 >gi|311894069|dbj|BAJ26477.1| putative peptide ABC transporter permease protein [Kitasatospora setae KM-6054] Length=337 Score = 295 bits (756), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 142/245 (58%), Positives = 186/245 (76%), Gaps = 1/245 (0%) Query 39 PPLLPYSYDDLDFNALLQPPGTKHWLGTNALGQDLLAQTLRGMQKSMLIGVCVAVISTGI 98 P L P+ Y D+ AL QPP HW GTN LGQD+ AQT+RG+QKS+ IG+ VAV+STG+ Sbjct 61 PWLTPWDYAAPDYTALRQPPSATHWFGTNGLGQDVFAQTVRGLQKSLAIGLLVAVLSTGL 120 Query 99 AATVGAISGYFGGWRDRTLMWVVDLLLVVPSFILIAIVTPRTKNSANIMFLVLLLAGFGW 158 A+ VGA +GYFGGW DR L ++VDL+L+ P+F++IA+++PR + S I F VLLLAGF W Sbjct 121 ASLVGACAGYFGGWTDRLLTFLVDLMLIFPAFLVIAVLSPRLRGSGWIAF-VLLLAGFNW 179 Query 159 MISSRMVRGMTMSLREREFIRAARYMGVSSRRIIVGHVVPNVASILIIDAALNVAAAILA 218 M+++R+VR +T SLREREF+ AARYMGV R I HV+PNV+S LI+DA + V A+++ Sbjct 180 MVTARVVRSLTRSLREREFVAAARYMGVGPFRTIWRHVLPNVSSFLIVDATVAVGGAVMS 239 Query 219 ETGLSFLGFGIQPPDVSLGTLIADGTASATAFPWVFLFPASILVLILVCANLTGDGLRDA 278 E LS+ GFG++PPDVSLGTL+A G A A FPW+F F A +LVL ++ NL GDGLRDA Sbjct 240 EAALSYFGFGVRPPDVSLGTLLAAGAAEAPVFPWLFYFAAGLLVLFVLAVNLVGDGLRDA 299 Query 279 LDPAS 283 LDP + Sbjct 300 LDPTA 304 >gi|326772212|ref|ZP_08231497.1| peptide ABC transporter, permease protein [Actinomyces viscosus C505] gi|326638345|gb|EGE39246.1| peptide ABC transporter, permease protein [Actinomyces viscosus C505] Length=300 Score = 295 bits (756), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 138/281 (50%), Positives = 204/281 (73%), Gaps = 1/281 (0%) Query 6 SRRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTKHWLG 65 +RR ++ RRF RN+ AV LL+ + A +++ D+D +A LQ P HW G Sbjct 16 TRRQIITRRFWRNKGAVVGAIGFLLMVLFALLGDAATHWTFTDVDSSAFLQAPSADHWFG 75 Query 66 TNALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVVDLLL 125 T G+D+ A + G +KSM+IGV VA++ TGIAA +G+ + YFGGW ++ +W DLLL Sbjct 76 TTQGGRDVYAMVVEGTRKSMMIGVFVALLQTGIAAVIGSSAAYFGGWWEKIALWATDLLL 135 Query 126 VVPSFILIAIVTPRTKNS-ANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAARYM 184 VVPSF++IAI++ R + +I ++LLAGFGWM+++R+VR +T+S++ E++ AAR+M Sbjct 136 VVPSFLIIAILSQRAGAAKGSIALFIILLAGFGWMLTARVVRSLTLSVKNLEYVNAARFM 195 Query 185 GVSSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIADGT 244 V S II H++PN+AS+LI+DA +NVA A+++ET LS+ GFG+Q P+ SLGTLIA+G Sbjct 196 NVPSPVIIARHILPNIASLLIVDATINVAYAVISETTLSYFGFGVQSPNTSLGTLIAEGQ 255 Query 245 ASATAFPWVFLFPASILVLILVCANLTGDGLRDALDPASRS 285 SAT +PW+FL PA++LVL+L+C N+ GDGLRDA+DP+S+S Sbjct 256 RSATTYPWIFLAPAAVLVLMLLCVNVMGDGLRDAIDPSSKS 296 >gi|343523852|ref|ZP_08760813.1| ABC transporter, permease protein [Actinomyces sp. oral taxon 175 str. F0384] gi|343400069|gb|EGV12590.1| ABC transporter, permease protein [Actinomyces sp. oral taxon 175 str. F0384] Length=328 Score = 295 bits (755), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 138/281 (50%), Positives = 204/281 (73%), Gaps = 1/281 (0%) Query 6 SRRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTKHWLG 65 +RR ++ RRF RN+ AV LL+ + A +++ D+D +A LQ P HW G Sbjct 44 TRRQIITRRFWRNKGAVVGAIGFLLMVLFALLGDAATHWTFTDVDSSAFLQAPSADHWFG 103 Query 66 TNALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVVDLLL 125 T G+D+ A + G +KSM+IGV VA++ TGIAA +G+ + YFGGW ++ +W DLLL Sbjct 104 TTQGGRDVYAMVVEGTRKSMMIGVFVALLQTGIAAVIGSSAAYFGGWWEKIALWATDLLL 163 Query 126 VVPSFILIAIVTPRTKNS-ANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAARYM 184 VVPSF++IAI++ R + +I ++LLAGFGWM+++R+VR +T+S++ E++ AAR+M Sbjct 164 VVPSFLIIAILSQRAGAAKGSIALFIILLAGFGWMLTARVVRSLTLSVKNLEYVNAARFM 223 Query 185 GVSSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIADGT 244 V S II H++PN+AS+LI+DA +NVA A+++ET LS+ GFG+Q P+ SLGTLIA+G Sbjct 224 NVPSPVIIARHILPNIASLLIVDATINVAYAVISETTLSYFGFGVQSPNTSLGTLIAEGQ 283 Query 245 ASATAFPWVFLFPASILVLILVCANLTGDGLRDALDPASRS 285 SAT +PW+FL PA++LVL+L+C N+ GDGLRDA+DP+S+S Sbjct 284 RSATTYPWIFLAPAAVLVLMLLCVNVMGDGLRDAIDPSSKS 324 >gi|325067463|ref|ZP_08126136.1| binding-protein-dependent transport systems inner membrane component [Actinomyces oris K20] Length=337 Score = 293 bits (751), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 137/281 (49%), Positives = 204/281 (73%), Gaps = 1/281 (0%) Query 6 SRRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTKHWLG 65 +RR ++ RRF RN+ AV LL+ + A +++ D+D ++ LQ P HW G Sbjct 53 TRRQIITRRFWRNKGAVVGAIGFLLMVLFALLGDTATHWTFTDVDSSSFLQAPSADHWFG 112 Query 66 TNALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVVDLLL 125 T G+D+ A + G +KSM+IGV VA++ TGIAA +G+ + YFGGW ++ +W DLLL Sbjct 113 TTQGGRDVYAMVVEGTRKSMMIGVFVALLQTGIAAVIGSSAAYFGGWWEKIALWATDLLL 172 Query 126 VVPSFILIAIVTPRTKNS-ANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAARYM 184 VVPSF++IAI++ R + +I ++LLAGFGWM+++R+VR +T+S++ E++ AAR+M Sbjct 173 VVPSFLIIAILSQRAGAAKGSIALFIILLAGFGWMLTARVVRSLTLSVKNLEYVNAARFM 232 Query 185 GVSSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIADGT 244 V S II H++PN+AS+LI+DA +NVA A+++ET LS+ GFG+Q P+ SLGTLIA+G Sbjct 233 NVPSPVIIARHILPNIASLLIVDATINVAYAVISETTLSYFGFGVQSPNTSLGTLIAEGQ 292 Query 245 ASATAFPWVFLFPASILVLILVCANLTGDGLRDALDPASRS 285 SAT +PW+FL PA++LVL+L+C N+ GDGLRDA+DP+S+S Sbjct 293 RSATTYPWIFLAPAAVLVLMLLCVNVMGDGLRDAIDPSSKS 333 >gi|320531724|ref|ZP_08032660.1| putative oligopeptide ABC transporter, permease protein OppC [Actinomyces sp. oral taxon 171 str. F0337] gi|320136063|gb|EFW28075.1| putative oligopeptide ABC transporter, permease protein OppC [Actinomyces sp. oral taxon 171 str. F0337] Length=328 Score = 293 bits (750), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 136/281 (49%), Positives = 203/281 (73%), Gaps = 1/281 (0%) Query 6 SRRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTKHWLG 65 +RR ++ RRF RN+ AV LL+ + A +++ D+D A LQ P HW G Sbjct 44 TRRQIITRRFWRNKGAVVGAVGFLLMVLFALFGGAATHWTFTDVDSAAFLQAPSADHWFG 103 Query 66 TNALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVVDLLL 125 T G+D+ A + G +KSM+IGV VA++ TG+AA +G+ + YFGGW ++ +W DLLL Sbjct 104 TTQGGRDVYAMVVEGTRKSMMIGVFVALLQTGVAAVIGSSAAYFGGWWEKIALWATDLLL 163 Query 126 VVPSFILIAIVTPRTKNS-ANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAARYM 184 VVPSF++IAI++ R + +I+ ++LLAGFGWM+++R+VR +T+S++ E++ AAR+M Sbjct 164 VVPSFLIIAILSQRAGAAKGSIVLFIILLAGFGWMLTARVVRSLTLSVKNLEYVNAARFM 223 Query 185 GVSSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIADGT 244 V S II H++PN+AS+LI+DA +NVA A+++ET LS+ GFG+Q P+ SLGTLIA+G Sbjct 224 NVPSPVIIARHILPNIASLLIVDATINVAYAVISETTLSYFGFGVQSPNTSLGTLIAEGQ 283 Query 245 ASATAFPWVFLFPASILVLILVCANLTGDGLRDALDPASRS 285 SAT +PW+FL PA++L L+L+C N+ GDGLRDA+DP+S+S Sbjct 284 RSATTYPWIFLAPAAVLFLMLLCVNVMGDGLRDAIDPSSKS 324 >gi|271963487|ref|YP_003337683.1| oligopeptide ABC transporter permease [Streptosporangium roseum DSM 43021] gi|270506662|gb|ACZ84940.1| oligopeptide ABC transporter, permease protein [Streptosporangium roseum DSM 43021] Length=279 Score = 291 bits (744), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 166/279 (60%), Positives = 207/279 (75%), Gaps = 1/279 (0%) Query 7 RRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTKHWLGT 66 R +V+ R RN A L ALLLL + AY P + + D DF A L+PP +HW GT Sbjct 2 RSKVVLARLARNAQARYGLFALLLLLLLAYVGPFAGAHDWTDKDFLAFLEPPSAEHWWGT 61 Query 67 NALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVVDLLLV 126 +GQD+ A TLRGMQKS++IG VA+ STG+AA VGA +GYFGGW DR LMW DLLLV Sbjct 62 TQIGQDVYAVTLRGMQKSIIIGFLVALFSTGVAALVGAAAGYFGGWVDRALMWGADLLLV 121 Query 127 VPSFILIAIVTPRTKNSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAARYMGV 186 +PSF++IAI++P K + + F+VLL A F WMI+SR+VR MT+SLRERE+I AARYMG+ Sbjct 122 LPSFLIIAILSPNLKGGSWLWFVVLL-AAFSWMITSRVVRSMTLSLREREYILAARYMGI 180 Query 187 SSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIADGTAS 246 RII+ HVVPN++S+LIIDA LNV+AAI+ E LSF GFG+QPPDVSLGTLIA G+ Sbjct 181 PGWRIILRHVVPNLSSLLIIDATLNVSAAIIGEASLSFFGFGVQPPDVSLGTLIAAGSGQ 240 Query 247 ATAFPWVFLFPASILVLILVCANLTGDGLRDALDPASRS 285 T +PW+FLFPA +LVL+++ NL GDGLRDALDP S Sbjct 241 VTGYPWLFLFPAGLLVLLVLSVNLVGDGLRDALDPGSNQ 279 >gi|297198904|ref|ZP_06916301.1| nickel ABC transporter, permease subunit NikC [Streptomyces sviceus ATCC 29083] gi|197711176|gb|EDY55210.1| nickel ABC transporter, permease subunit NikC [Streptomyces sviceus ATCC 29083] Length=319 Score = 286 bits (733), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 155/279 (56%), Positives = 202/279 (73%), Gaps = 2/279 (0%) Query 14 RFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTKHWLGTNALGQDL 73 RF RNR A+ L L LLF+ AY P +SY DLDFNA QPP HW GT+ G DL Sbjct 34 RFARNRTALFGLLMLALLFLMAYVAPLFYKWSYTDLDFNAFQQPPSASHWFGTDQTGSDL 93 Query 74 LAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVVDLLLVVPSFILI 133 A T RGMQKS++IG+ VI T +AA VGA +GYFGGW DR LMWVVDLLLV+P+F++I Sbjct 94 FALTARGMQKSLVIGLLTGVICTVVAAAVGASAGYFGGWTDRGLMWVVDLLLVMPNFLII 153 Query 134 AIVTPRTKNSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAARYMGVSSRRIIV 193 A+++P + + ++F+VLL A F WMI+ R+VR MT++L++REF++AA+YMGV + II Sbjct 154 AVLSPLFQGTTWLVFVVLL-AAFSWMITGRVVRSMTLTLKDREFVKAAKYMGVPAPVIIF 212 Query 194 GHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIADGTASATAFPWV 253 H++P++AS+LIID + V AI+ ET LS+ GFG+Q PDVSLGT+IA GT +A +FPW+ Sbjct 213 RHILPSMASMLIIDGTIQVGTAIIGETSLSYFGFGVQAPDVSLGTVIATGTPAAPSFPWL 272 Query 254 FLFPASILVLILVCANLTGDGLRDALDP-ASRSLRRGVR 291 F FPA LVLI + GDGLRDALDP +SR+ R R Sbjct 273 FYFPAGCLVLICLSIAFIGDGLRDALDPNSSRAKARKNR 311 >gi|271968342|ref|YP_003342538.1| binding-protein-dependent transporter inner membrane component [Streptosporangium roseum DSM 43021] gi|270511517|gb|ACZ89795.1| binding-protein-dependent transport systems inner membrane component [Streptosporangium roseum DSM 43021] Length=303 Score = 285 bits (730), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 150/279 (54%), Positives = 199/279 (72%), Gaps = 1/279 (0%) Query 6 SRRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTKHWLG 65 SR +V RF R+ A L+L+F+ A+A P L +SY D DF A LQPP +HW G Sbjct 22 SRLRVVAGRFSRSVQGRIGFALLVLMFLLAFAGPYLGRWSYTDKDFMAFLQPPSAEHWWG 81 Query 66 TNALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVVDLLL 125 T G D+ A TLRGMQKS+++G+ AVI T +AA VGA +GYF GW DR+L W+ DLLL Sbjct 82 TLQTGADVYAVTLRGMQKSLIVGLLAAVIGTTLAAVVGAFAGYFMGWADRSLTWLTDLLL 141 Query 126 VVPSFILIAIVTPRTKNSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAARYMG 185 V+P+F+++AI++P VL+LA F WM++S++VR MT+SL+EREFI+AAR+MG Sbjct 142 VLPAFLILAIMSPLFAE-GQWPLFVLVLALFLWMVTSKIVRSMTISLKEREFIQAARFMG 200 Query 186 VSSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIADGTA 245 VS RII HV+PN++S+L +DA LNV+AAIL ET LS+ GFGIQPPDVSLG+LIADG Sbjct 201 VSPVRIIFRHVIPNMSSLLAVDATLNVSAAILTETSLSYFGFGIQPPDVSLGSLIADGAK 260 Query 246 SATAFPWVFLFPASILVLILVCANLTGDGLRDALDPASR 284 +A PW F F A +L++ ++ NL GD LRDA DP ++ Sbjct 261 TAVYAPWTFWFCAGLLIVTVLAVNLVGDSLRDAFDPTAK 299 >gi|256397416|ref|YP_003118980.1| binding-protein-dependent transporters inner membrane component [Catenulispora acidiphila DSM 44928] gi|256363642|gb|ACU77139.1| binding-protein-dependent transport systems inner membrane component [Catenulispora acidiphila DSM 44928] Length=308 Score = 282 bits (722), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 146/280 (53%), Positives = 199/280 (72%), Gaps = 2/280 (0%) Query 5 ASRRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTKHWL 64 + R LV RRF RN A+ L L+LLF A+ P L +S D+D P H+ Sbjct 24 SGRTALVWRRFRRNTFAMVGLVGLVLLFAFAFLGPLLTHWSPGDIDLINTQSGPTGDHFF 83 Query 65 GTNALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVVDLL 124 GT+ +G D+ AQT+ GMQKS++IG+ VA++STG A +G + YFGGW ++ + W+ DL Sbjct 84 GTDDVGHDMFAQTVSGMQKSLIIGLLVALLSTGSAGLLGTAAAYFGGWWEKAISWLTDLF 143 Query 125 LVVPSFILIAIVTPRTKNSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAARYM 184 LVVPS +++ I++P + A+ + LV ++A F WMI+SR+VRGMT+++REREF+RAARYM Sbjct 144 LVVPSLLMLIILSPYFQG-ASWLVLVPMIAVFSWMITSRVVRGMTLTIREREFVRAARYM 202 Query 185 GVSSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIADGT 244 GV S II H++PN++SILI+D LNV AAI+ E+ LSFLGFGIQ P+VSLGT+I DG Sbjct 203 GVPSWTIIRRHILPNISSILIVDYTLNVGAAIVTESFLSFLGFGIQSPNVSLGTVINDGA 262 Query 245 ASATAFPW-VFLFPASILVLILVCANLTGDGLRDALDPAS 283 A+ W +F+FPAS+LVLI++C N GDGLRDALDP S Sbjct 263 QFASTDQWYLFVFPASVLVLIILCVNFIGDGLRDALDPNS 302 >gi|227494778|ref|ZP_03925094.1| oligopeptide ABC superfamily ATP binding cassette transporter, membrane protein [Actinomyces coleocanis DSM 15436] gi|226831778|gb|EEH64161.1| oligopeptide ABC superfamily ATP binding cassette transporter, membrane protein [Actinomyces coleocanis DSM 15436] Length=311 Score = 281 bits (720), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 133/281 (48%), Positives = 202/281 (72%), Gaps = 1/281 (0%) Query 6 SRRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTKHWLG 65 +R LV RRF R+ A + + ++ + A P L P+ Y ++D + L+PP +HW G Sbjct 27 NRSALVRRRFFRSNTARLGVIGMSIIVLIAIFGPMLSPWGYTEVDNTSFLKPPSAQHWFG 86 Query 66 TNALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVVDLLL 125 T G+D+ A T++G+++S++IG CV++I T +AA +G+ + YFG D+T++WV+DLLL Sbjct 87 TTQGGRDVFALTVQGLRQSLVIGFCVSLIQTTLAAVIGSTAAYFGKVIDKTILWVIDLLL 146 Query 126 VVPSFILIAIVTPRTKNS-ANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAARYM 184 V+PSF+LIA+++ RT ++ +I +LLLA FGWM+S+R+VR +TMS++ E++ AARYM Sbjct 147 VIPSFLLIAVISQRTGDAKGSIAIFILLLAAFGWMLSARVVRSLTMSVKNLEYVTAARYM 206 Query 185 GVSSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIADGT 244 V S II H++PNVAS LIIDAAL +A++ ET LS+ GFG+Q P+ SLG LI++G Sbjct 207 SVPSWVIITRHIIPNVASYLIIDAALGFVSAVMGETVLSYFGFGVQAPNTSLGVLISEGQ 266 Query 245 ASATAFPWVFLFPASILVLILVCANLTGDGLRDALDPASRS 285 + T+ PW+F+ PA++L L L+ NL GDGLRDA+DP+S+S Sbjct 267 SLTTSSPWIFMAPATLLTLSLIFVNLIGDGLRDAIDPSSKS 307 >gi|297559513|ref|YP_003678487.1| binding-protein-dependent transporters inner membrane component [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843961|gb|ADH65981.1| binding-protein-dependent transport systems inner membrane component [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length=303 Score = 276 bits (705), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 138/282 (49%), Positives = 196/282 (70%), Gaps = 0/282 (0%) Query 6 SRRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTKHWLG 65 +R VVR+ + R + L+LL V A+ P + + DF A L+ P +HW+G Sbjct 21 NRFKDVVRQLMGTRRVIVGFVMLVLLAVFAFVGPHISGWEVGQRDFGATLEAPSAEHWMG 80 Query 66 TNALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVVDLLL 125 TN GQD+ Q G+QKS+LIG+ VAV ST +AA VGA +GYFGG DR LMWV DL L Sbjct 81 TNRTGQDIFTQATAGLQKSLLIGLLVAVASTCMAALVGAFAGYFGGVTDRALMWVADLAL 140 Query 126 VVPSFILIAIVTPRTKNSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAARYMG 185 V+P+F+++AI++ LV+LLA F WM++S+MVRG+++SLRERE+I AAR+MG Sbjct 141 VLPNFVILAILSRHFVGQGGWFVLVILLAAFSWMVTSKMVRGLSISLREREYIHAARFMG 200 Query 186 VSSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIADGTA 245 V +II+ H++PN++S+LI DA + V+ AI+ ET LS+ G G+Q PD+SLG +IA+G++ Sbjct 201 VPPYKIILRHILPNMSSLLIADATITVSTAIIGETALSYFGLGVQSPDISLGMVIAEGSS 260 Query 246 SATAFPWVFLFPASILVLILVCANLTGDGLRDALDPASRSLR 287 +T PW+F FP +LVL+++ N+ GDGLRDALDP S+S R Sbjct 261 FSTTAPWMFAFPTVLLVLMVLAVNMIGDGLRDALDPQSKSRR 302 >gi|269127484|ref|YP_003300854.1| binding-protein-dependent transport systems inner membrane component [Thermomonospora curvata DSM 43183] gi|268312442|gb|ACY98816.1| binding-protein-dependent transport systems inner membrane component [Thermomonospora curvata DSM 43183] Length=290 Score = 272 bits (695), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 147/278 (53%), Positives = 199/278 (72%), Gaps = 2/278 (0%) Query 6 SRRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTKHWLG 65 SR L RR L +R AV L L L + A+A P L + + D DF A+ +PP +HW G Sbjct 10 SRTALWARRVLADRRAVLGLTLLGALVLLAFAGPALSRWEWTDTDFTAIREPPSAEHWFG 69 Query 66 TNALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVVDLLL 125 T G+D+ A TLRGM++S+LIG C A ++T +AA VG +GY GGW DRTLMW DLLL Sbjct 70 TTDSGRDVYALTLRGMRRSLLIGFCAAALTTALAALVGITAGYAGGWIDRTLMWGTDLLL 129 Query 126 VVPSFILIAIVTPRTKNSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAARYMG 185 VVP+F+++A+++P A LV +LA W I++RMVR MT+SL+ REF+ AARYMG Sbjct 130 VVPAFLVVAMLSP--ALGATWPLLVAVLAAVMWTITARMVRHMTISLKRREFVLAARYMG 187 Query 186 VSSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIADGTA 245 V R ++ H++P++AS+LIID LNV AI+AE+ L++ GFG++PPDVSLGTLIADG+ Sbjct 188 VGPVRTVLRHILPHLASLLIIDGTLNVGVAIVAESALAYFGFGVRPPDVSLGTLIADGSG 247 Query 246 SATAFPWVFLFPASILVLILVCANLTGDGLRDALDPAS 283 + TAFPW+F F A++LVL ++ NL G+GLRDALDPA+ Sbjct 248 AVTAFPWLFGFAAALLVLTVLAVNLVGEGLRDALDPAA 285 >gi|333918766|ref|YP_004492347.1| binding-protein-dependent transport systems inner membrane component [Amycolicicoccus subflavus DQS3-9A1] gi|333480987|gb|AEF39547.1| Binding-protein-dependent transport systems inner membrane component [Amycolicicoccus subflavus DQS3-9A1] Length=273 Score = 265 bits (678), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 130/268 (49%), Positives = 191/268 (72%), Gaps = 1/268 (0%) Query 16 LRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTKHWLGTNALGQDLLA 75 +++ +A A LL + A+ P L P+ + + A+LQPP +HWLGT+ LG+DLLA Sbjct 1 MKHPLTLAGSAILLTIAGIAFLGPWLYPHDHITQNHAAVLQPPSWEHWLGTSRLGEDLLA 60 Query 76 QTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVVDLLLVVPSFILIAI 135 QT+RG+QKS+LIG+ VAV+ST +AA VG ++GY+GG DR LMW VD+LL++P+F+++A+ Sbjct 61 QTMRGLQKSLLIGLAVAVLSTAVAAIVGTLAGYYGGRVDRGLMWCVDMLLILPTFLVVAV 120 Query 136 VTPRTKNSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAARYMGVSSRRIIVGH 195 ++P + + + LV+++A F W ++SR+VR MSLRER F+RAA YMG R+I H Sbjct 121 MSPVLRGQ-SWLLLVVVIAMFQWTLASRIVRARAMSLRERGFVRAAEYMGARGPRVIRTH 179 Query 196 VVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIADGTASATAFPWVFL 255 ++PN+A +LIID +NV A++AE GLS+ GFG++PPDVSLGTLI G+ SA +PWVFL Sbjct 180 LIPNMAPLLIIDCTINVGVAVIAEAGLSYFGFGVRPPDVSLGTLIGIGSNSAITYPWVFL 239 Query 256 FPASILVLILVCANLTGDGLRDALDPAS 283 P + L+ ++ L G+GLR +D S Sbjct 240 VPVAFLITTVMAVGLIGEGLRRTIDRES 267 >gi|282855187|ref|ZP_06264519.1| putative oligopeptide ABC transporter, permease protein OppC [Propionibacterium acnes J139] gi|282581775|gb|EFB87160.1| putative oligopeptide ABC transporter, permease protein OppC [Propionibacterium acnes J139] gi|314924163|gb|EFS87994.1| putative oligopeptide ABC transporter, permease protein OppC [Propionibacterium acnes HL001PA1] gi|314965073|gb|EFT09172.1| putative oligopeptide ABC transporter, permease protein OppC [Propionibacterium acnes HL082PA2] gi|314982273|gb|EFT26366.1| putative oligopeptide ABC transporter, permease protein OppC [Propionibacterium acnes HL110PA3] gi|315090460|gb|EFT62436.1| putative oligopeptide ABC transporter, permease protein OppC [Propionibacterium acnes HL110PA4] gi|327326690|gb|EGE68476.1| oligopeptide ABC transporter, permease protein OppC [Propionibacterium acnes HL103PA1] Length=333 Score = 263 bits (672), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 132/281 (47%), Positives = 192/281 (69%), Gaps = 1/281 (0%) Query 6 SRRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTKHWLG 65 SR L++RRF R + + L L+ + A P + + Y +D NA L PP HW G Sbjct 49 SRGHLILRRFWRPVGSKVGVIGLALVVLLAAIGPYIANWDYWVVDDNAFLSPPDQYHWFG 108 Query 66 TNALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVVDLLL 125 T+ G DL A T+ G++KS++IG CVA+I +AA +G+ + YFG ++ + W +DLLL Sbjct 109 TSQGGFDLFAMTVEGLRKSLIIGFCVALIVETLAALIGSAAAYFGKVAEKAIPWFIDLLL 168 Query 126 VVPSFILIAIVTPRTK-NSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAARYM 184 V+PSF++IAI++ T S + + L++LL+ F WM+S+R+VR MT+S+ +++ AAR+M Sbjct 169 VIPSFLIIAILSQHTSGKSTSTLLLIVLLSAFSWMLSARVVRAMTLSVVNLDYVTAARFM 228 Query 185 GVSSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIADGT 244 V IIV HV+PN+AS LIID AL V AAI++ET LSF GFG+Q P+ SLGTL+ DG Sbjct 229 SVPPFTIIVKHVIPNIASYLIIDLALGVVAAIMSETVLSFFGFGVQKPETSLGTLLGDGM 288 Query 245 ASATAFPWVFLFPASILVLILVCANLTGDGLRDALDPASRS 285 + T PW+F+FPA +LV++L+ N GDGLRDA+DP+S+S Sbjct 289 TAVTTSPWLFMFPAGVLVILLLSVNFIGDGLRDAVDPSSKS 329 >gi|315103988|gb|EFT75964.1| putative oligopeptide ABC transporter, permease protein OppC [Propionibacterium acnes HL050PA2] Length=335 Score = 263 bits (672), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 132/281 (47%), Positives = 192/281 (69%), Gaps = 1/281 (0%) Query 6 SRRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTKHWLG 65 SR L++RRF R + + L L+ + A P + + Y +D NA L PP HW G Sbjct 51 SRGHLILRRFWRPVGSKVGVIGLALVVLLAAIGPYIANWDYWVVDDNAFLSPPDQYHWFG 110 Query 66 TNALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVVDLLL 125 T+ G DL A T+ G++KS++IG CVA+I +AA +G+ + YFG ++ + W +DLLL Sbjct 111 TSQGGFDLFAMTVEGLRKSLIIGFCVALIVETLAALIGSAAAYFGKVAEKAIPWFIDLLL 170 Query 126 VVPSFILIAIVTPRTK-NSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAARYM 184 V+PSF++IAI++ T S + + L++LL+ F WM+S+R+VR MT+S+ +++ AAR+M Sbjct 171 VIPSFLIIAILSQHTSGKSTSTLLLIVLLSAFSWMLSARVVRAMTLSVVNLDYVTAARFM 230 Query 185 GVSSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIADGT 244 V IIV HV+PN+AS LIID AL V AAI++ET LSF GFG+Q P+ SLGTL+ DG Sbjct 231 SVPPFTIIVKHVIPNIASYLIIDLALGVVAAIMSETVLSFFGFGVQKPETSLGTLLGDGM 290 Query 245 ASATAFPWVFLFPASILVLILVCANLTGDGLRDALDPASRS 285 + T PW+F+FPA +LV++L+ N GDGLRDA+DP+S+S Sbjct 291 TAVTTSPWLFMFPAGVLVILLLSVNFIGDGLRDAVDPSSKS 331 >gi|315093695|gb|EFT65671.1| ABC transporter, permease protein [Propionibacterium acnes HL060PA1] Length=333 Score = 262 bits (669), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 131/281 (47%), Positives = 191/281 (68%), Gaps = 1/281 (0%) Query 6 SRRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTKHWLG 65 SR L++RRF R + + L+ + A P + + Y +D NA L PP HW G Sbjct 49 SRGHLILRRFWRPVGSKVGVIGFALVVLLAAIGPYIANWDYWVVDDNAFLSPPDQYHWFG 108 Query 66 TNALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVVDLLL 125 T+ G DL A T+ G++KS++IG CVA+I +AA +G+ + YFG ++ + W +DLLL Sbjct 109 TSQGGFDLFAMTVEGLRKSLIIGFCVALIVETLAALIGSAAAYFGKVAEKAIPWFIDLLL 168 Query 126 VVPSFILIAIVTPRTK-NSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAARYM 184 V+PSF++IAI++ T S + + L++LL+ F WM+S+R+VR MT+S+ +++ AAR+M Sbjct 169 VIPSFLIIAILSQHTSGKSTSTLLLIVLLSAFSWMLSARVVRAMTLSVVNLDYVTAARFM 228 Query 185 GVSSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIADGT 244 V IIV HV+PN+AS LIID AL V AAI++ET LSF GFG+Q P+ SLGTL+ DG Sbjct 229 SVPPFTIIVKHVIPNIASYLIIDLALGVVAAIMSETVLSFFGFGVQKPETSLGTLLGDGM 288 Query 245 ASATAFPWVFLFPASILVLILVCANLTGDGLRDALDPASRS 285 + T PW+F+FPA +LV++L+ N GDGLRDA+DP+S+S Sbjct 289 TAVTTSPWLFMFPAGVLVILLLSVNFIGDGLRDAVDPSSKS 329 >gi|283783689|ref|YP_003374443.1| ABC transporter, permease protein [Gardnerella vaginalis 409-05] gi|297242580|ref|ZP_06926519.1| ABC-type dipeptide/oligopeptide/nickel transporter, permease component [Gardnerella vaginalis AMD] gi|283441317|gb|ADB13783.1| ABC transporter, permease protein [Gardnerella vaginalis 409-05] gi|296889389|gb|EFH28122.1| ABC-type dipeptide/oligopeptide/nickel transporter, permease component [Gardnerella vaginalis AMD] Length=315 Score = 257 bits (657), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 130/282 (47%), Positives = 186/282 (66%), Gaps = 0/282 (0%) Query 7 RRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTKHWLGT 66 + TL RRF R +AV L L++L + A + +SYD+ DF++L PP +HWLGT Sbjct 32 KMTLYTRRFFRRPSAVVGLVMLVILILFALFGSKISKWSYDEPDFSSLATPPSAEHWLGT 91 Query 67 NALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVVDLLLV 126 G D+ A +RG+ +S+ IG+ ++ T IAA VG YF GW ++ MW++D+LL+ Sbjct 92 TPGGSDMYAMVVRGLGRSLSIGIVSSITITVIAALVGTAISYFEGWFEQVGMWLLDMLLI 151 Query 127 VPSFILIAIVTPRTKNSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAARYMGV 186 VPSF+LIA++ + ++ ++L L FGW+ +R +R +T+SLRERE++RAA++ GV Sbjct 152 VPSFLLIALIISASSGGSDWLWLAFGLTAFGWIGYARTLRTLTLSLREREYVRAAKFEGV 211 Query 187 SSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIADGTAS 246 SS RIIV H+VPN+ S+LII+ L V AI ET LSFLG GI+ PD SLGTL+ G + Sbjct 212 SSFRIIVRHLVPNLGSVLIINTVLGVIGAINGETALSFLGLGIKAPDTSLGTLLNAGQSV 271 Query 247 ATAFPWVFLFPASILVLILVCANLTGDGLRDALDPASRSLRR 288 PWV L P+++LVL+ L GDGLRDA+DP SRS+ + Sbjct 272 VQTSPWVLLVPSAVLVLLTFSVQLIGDGLRDAIDPYSRSVGK 313 >gi|72162691|ref|YP_290348.1| peptide ABC transporter permease [Thermobifida fusca YX] gi|71916423|gb|AAZ56325.1| putative peptide ABC transporter permease protein [Thermobifida fusca YX] Length=296 Score = 256 bits (655), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 125/237 (53%), Positives = 172/237 (73%), Gaps = 1/237 (0%) Query 43 PYSYDDLDFNALLQPPGTKHWLGTNALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATV 102 P+ + + D+ + LQPP +HW GT+ G+DL TL G++KS+LIG+ VAV++T +AA V Sbjct 52 PWGFTERDYTSFLQPPSARHWFGTDGSGRDLYVITLVGLRKSLLIGLLVAVLTTALAAVV 111 Query 103 GAISGYFGGWRDRTLMWVVDLLLVVPSFILIAIVTPRTKNSANIMFLVLLLAGFGWMISS 162 GAI+GYF G DR L W+ DL LVVP +++A++ P + L+LLLA FGWM+++ Sbjct 112 GAITGYFPGLPDRLLTWLTDLALVVPPLLVLAVLFPIVDKGGWVA-LILLLAAFGWMVTA 170 Query 163 RMVRGMTMSLREREFIRAARYMGVSSRRIIVGHVVPNVASILIIDAALNVAAAILAETGL 222 RMVR T SLR E+IRAARY+G S II+ H++PN++ +L+ D +NV+AAILAETGL Sbjct 171 RMVRAATRSLRHHEYIRAARYLGASPTTIIIRHLLPNLSGLLVADVTVNVSAAILAETGL 230 Query 223 SFLGFGIQPPDVSLGTLIADGTASATAFPWVFLFPASILVLILVCANLTGDGLRDAL 279 S++G G+QPPDVSLGTLIA GT AT PW+F F +LVL++ +L G+GLRDAL Sbjct 231 SYVGLGVQPPDVSLGTLIAHGTRYATTHPWMFGFCTGLLVLLVTAVHLLGEGLRDAL 287 >gi|298252445|ref|ZP_06976240.1| ABC-type dipeptide/oligopeptide/nickel transporter, permease component [Gardnerella vaginalis 5-1] gi|297533335|gb|EFH72218.1| ABC-type dipeptide/oligopeptide/nickel transporter, permease component [Gardnerella vaginalis 5-1] Length=315 Score = 256 bits (654), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 129/282 (46%), Positives = 185/282 (66%), Gaps = 0/282 (0%) Query 7 RRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTKHWLGT 66 + TL RRF R +AV L L++L + A + +SYD+ DF++L PP +HWLGT Sbjct 32 KMTLYTRRFFRRPSAVVGLVMLIILILFALFGSKISKWSYDEPDFSSLATPPSAEHWLGT 91 Query 67 NALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVVDLLLV 126 G D+ A +RG+ +S+ IG+ ++ T IAA VG YF GW ++ MW++D+LL+ Sbjct 92 TPGGSDMYAMVVRGLGRSLSIGIVSSITITVIAALVGTAISYFEGWFEQVGMWLLDMLLI 151 Query 127 VPSFILIAIVTPRTKNSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAARYMGV 186 VPSF+LIA++ + ++ ++L L FGW+ +R +R +T+SLRERE++RAA++ GV Sbjct 152 VPSFLLIALIISASSGGSDWLWLAFGLTAFGWIGYARTLRTLTLSLREREYVRAAKFEGV 211 Query 187 SSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIADGTAS 246 SS RIIV H+VPN+ S+LII+ L V I ET LSFLG GI+ PD SLGTL+ G + Sbjct 212 SSFRIIVRHLVPNLGSVLIINTVLGVIGTINGETALSFLGLGIKAPDTSLGTLLNAGQSV 271 Query 247 ATAFPWVFLFPASILVLILVCANLTGDGLRDALDPASRSLRR 288 PWV L P+++LVL+ L GDGLRDA+DP SRS+ + Sbjct 272 VQTSPWVLLVPSAVLVLLTFSVQLIGDGLRDAIDPYSRSVGK 313 >gi|310287155|ref|YP_003938413.1| peptide/nickel ABC transporter permease [Bifidobacterium bifidum S17] gi|311064018|ref|YP_003970743.1| oligopeptide transport system permease protein oppC [Bifidobacterium bifidum PRL2010] gi|313139854|ref|ZP_07802047.1| oligopeptide transport system permease protein oppC [Bifidobacterium bifidum NCIMB 41171] gi|309251091|gb|ADO52839.1| peptide/nickel transport system, permease protein [Bifidobacterium bifidum S17] gi|310866337|gb|ADP35706.1| oppC Oligopeptide transport system permease protein [Bifidobacterium bifidum PRL2010] gi|313132364|gb|EFR49981.1| oligopeptide transport system permease protein oppC [Bifidobacterium bifidum NCIMB 41171] Length=314 Score = 254 bits (650), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 126/276 (46%), Positives = 187/276 (68%), Gaps = 0/276 (0%) Query 10 LVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTKHWLGTNAL 69 L+ RRF R R+AV L LL+L A + ++YDD DF AL P HWLGT++ Sbjct 33 LIARRFFRQRSAVVGLIILLVLVFFALFGANIGKWAYDDPDFLALSAGPSASHWLGTDSG 92 Query 70 GQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVVDLLLVVPS 129 G DL A +RG+ KS++IG+ +V + IA+ +G +FGGW +R MW++D+LLVVPS Sbjct 93 GSDLYAMVVRGLGKSLMIGIITSVATMAIASLLGTAISFFGGWVERVGMWLLDMLLVVPS 152 Query 130 FILIAIVTPRTKNSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAARYMGVSSR 189 F+LIA++ + ++L++ L FGW+ +R++R +T+SLRER++++AAR+MGV S Sbjct 153 FLLIAMIVRTANATTGWIWLIIGLTAFGWVGYARIIRTLTLSLRERDYVKAARFMGVGSF 212 Query 190 RIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIADGTASATA 249 +IIV H++PN+AS++II+ L V A+ +ET LS+LG G++ PDVSLG+++ G S Sbjct 213 KIIVRHLMPNLASMIIINTVLGVVGAVNSETALSYLGLGVKAPDVSLGSILQSGAVSMQT 272 Query 250 FPWVFLFPASILVLILVCANLTGDGLRDALDPASRS 285 PW+ +FP+ LVL+ L GDGLRDALDP SR+ Sbjct 273 APWLLVFPSIALVLLTFSMQLIGDGLRDALDPNSRA 308 >gi|297571990|ref|YP_003697764.1| binding-protein-dependent transporters inner membrane component [Arcanobacterium haemolyticum DSM 20595] gi|296932337|gb|ADH93145.1| binding-protein-dependent transport systems inner membrane component [Arcanobacterium haemolyticum DSM 20595] Length=321 Score = 253 bits (646), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 129/281 (46%), Positives = 186/281 (67%), Gaps = 1/281 (0%) Query 6 SRRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTKHWLG 65 +R LV RRF+RN AV + L+ + + A+ + P+ Y D A LQ P HW G Sbjct 37 TRGQLVRRRFVRNWTAVLGVFMLVGIVLFAFFGSYISPWDYLTRDRTAPLQAPSATHWFG 96 Query 66 TNALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVVDLLL 125 T+ G+DL A T+ G++ S++IG VA I TG AA G+ YFG W D+ W++DL+L Sbjct 97 TDNRGRDLFALTIEGLRTSLMIGFAVAFIQTGWAALFGSSIAYFGKWIDKAGSWLIDLML 156 Query 126 VVPSFILIAIVTPR-TKNSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAARYM 184 V+PSF+LIA++ R S +++ L+ LLA FGWM+++R+VR MTMS++ +++ AA+YM Sbjct 157 VIPSFLLIAVINQRLGGQSGSVIVLIFLLALFGWMLTARVVRSMTMSVKNLDYVNAAQYM 216 Query 185 GVSSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIADGT 244 V +I H++PN++S+LIID L +A A+LAET LS+ G GI+ P +SLG LI +G Sbjct 217 SVPPFVVITRHIIPNISSLLIIDFTLGIAGAVLAETTLSYFGLGIKDPQISLGRLIGEGQ 276 Query 245 ASATAFPWVFLFPASILVLILVCANLTGDGLRDALDPASRS 285 ASA W+F+ PA +LV +LV N GDGLRDA+DP S+S Sbjct 277 ASALTHSWLFVPPALVLVFMLVSVNFIGDGLRDAIDPTSKS 317 >gi|262200630|ref|YP_003271838.1| binding-protein-dependent transporter inner membrane component [Gordonia bronchialis DSM 43247] gi|262083977|gb|ACY19945.1| binding-protein-dependent transport systems inner membrane component [Gordonia bronchialis DSM 43247] Length=326 Score = 249 bits (636), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 127/279 (46%), Positives = 184/279 (66%), Gaps = 2/279 (0%) Query 5 ASRRTLVVRRFLRNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDFNALLQPPGTKHWL 64 + R ++ +RF RNR A+ A +LL + + YSY D DF A+ PP +HW Sbjct 44 SGRTKILAKRFARNRPALVGSAIFVLLVLFSLFGGMFTEYSYTDTDFAAIGYPPSPEHWF 103 Query 65 GTNALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTLMWVVDLL 124 GTN G DL AQ + G+Q+S+ I V V+V + IAA +G +S YFGG R ++ + +L Sbjct 104 GTNDAGNDLYAQVVHGLQRSLTIAVAVSVGTAVIAALLGGLSAYFGGTTQRVILGTIYIL 163 Query 125 LVVPSFILIAIVTPRTKNSANIMFLVLLLAGFGWMISSRMVRGMTMSLREREFIRAARYM 184 LVVPSF+++A+V+ K + +L+++L FGWM+ +R++ M +S++ER+++ AARY+ Sbjct 164 LVVPSFLILALVS--NKTGGDWRWLIVVLVAFGWMMLARVIHSMALSIKERDYVTAARYL 221 Query 185 GVSSRRIIVGHVVPNVASILIIDAALNVAAAILAETGLSFLGFGIQPPDVSLGTLIADGT 244 GV + IIV H++PN+AS+L+I+ AL V A +L ETGLSFLGFG++ PDVSLG L+ GT Sbjct 222 GVPAIVIIVRHILPNMASLLVINLALGVVATVLTETGLSFLGFGVKIPDVSLGALLQAGT 281 Query 245 ASATAFPWVFLFPASILVLILVCANLTGDGLRDALDPAS 283 S A PW+F FPA L L+ + L DGLRDA DP S Sbjct 282 GSLEASPWLFWFPAGALALLTISMALVADGLRDAFDPTS 320 Lambda K H 0.328 0.140 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 477082076112 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40